[Go-diff] GO update 10/21/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.281 by 1.283

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070085
* Created object of type obo:TERM with id GO:0070086
* Populated new object GO:0070085 (macro)
  * Changed name of GO:0070085 from "<new term>" to "glycosylation"
  * Set definition of GO:0070085 to "The covalent attachment of a glycosyl residue to a substrate molecule."
  * Added definition dbxref GOC:mah to GO:0070085
  * Copied GO:0070085 to GO:0005975 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070085
* Populated new object GO:0070086 (macro)
  * Changed name of GO:0070086 from "<new term>" to "ubiquitin-dependent endocytosis"
  * Set definition of GO:0070086 to "Endocytosis of a protein that requires the substrate to be modified by uniquitination. Several plasma membrane proteins, including cell surface permeases and some receptors, are targeted for internalization by endocytosis, and are thereafter delivered to the vacuole or lysosome, where they are degraded."
  * Added definition dbxref GOC:jp to GO:0070086
  * Added definition dbxref GOC:mah to GO:0070086
  * Added definition dbxref PMID:9409540 to GO:0070086
  * Added synonym "ubiquitin-mediated endocytosis" to GO:0070086
  * Added general dbxref GOC:jp to synonym ubiquitin-mediated endocytosis of GO:0070086
  * Changed synonym scope of GO:0070086 from "Related" to "Exact"
  * Copied GO:0070086 to GO:0006897 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070086
* Changed definition of GO:0005975 from "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y." to "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule."
* Added definition dbxref GOC:mah to GO:0005975
* Changed definition of GO:0006897 from "A type of vesicle-mediated transport in which cells take up external materials by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle." to "A type of vesicle-mediated transport in which cells take up external materials or membrane constituents by the invagination of small region of the plasma membrane to form a new membrane-bounded vesicle."
* Deleted general dbxref XX:<new dbxref> from GO:0035104
* Copied GO:0043413 to GO:0070085 with type OBO_REL:is_a
* Added synonym "nerve terminal" to GO:0043679
* Changed synonym scope of GO:0043679 from "Related" to "Exact"
* Deleted synonym "H3K4 demethylation (me1 me2 and me3)" from GO:0070076
* Deleted synonym "H3K4 demethylation (me1 me2 and me3)" from GO:0070077
* Deleted synonym "H3K4 demethylation (me1 me2 and me3)" from GO:0070078
* Changed name of GO:0070079 from "histone H3-R3 demethylation" to "histone H4-R3 demethylation"
* Changed definition of GO:0070079 from "The modification of histone H3 by the removal of a methyl group from arginine at position 3 of the histone." to "The modification of histone H4 by the removal of a methyl group from arginine at position 3 of the histone."
* Deleted synonym "H3K4 demethylation (me1 me2 and me3)" from GO:0070079