[Go-diff] GO update 10/27/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.283 by 1.285

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010793
* Created object of type obo:TERM with id GO:0010794
* Created object of type obo:TERM with id GO:0010795
* Created object of type obo:TERM with id GO:0010796
* Created object of type obo:TERM with id GO:0010797
* Created object of type obo:TERM with id GO:0010798
* Created object of type obo:TERM with id GO:0010799
* Created object of type obo:TERM with id GO:0010800
* Created object of type obo:TERM with id GO:0010801
* Populated new object GO:0010793 (macro)
  * Changed name of GO:0010793 from "<new term>" to "regulation of mRNA export from nucleus"
  * Set definition of GO:0010793 to "Any process that modulates the frequency, rate or extent of the directed movement of mRNA from the nucleus to the cytoplasm."
  * Added definition dbxref GOC:dph to GO:0010793
  * Added definition dbxref GOC:tb to GO:0010793
  * Copied GO:0010793 to GO:0006406 with type regulates
  * Copied GO:0010793 to GO:0046831 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010793
* Populated new object GO:0010794 (macro)
  * Changed name of GO:0010794 from "<new term>" to "regulation of dolichol biosynthetic process"
  * Set definition of GO:0010794 to "Any process that modulates the frequency, rate or extent of dolichol biosynthesis. Dolichol biosynthesis consists of the chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units."
  * Added definition dbxref GOC:dph to GO:0010794
  * Added definition dbxref GOC:tb to GO:0010794
  * Copied GO:0010794 to GO:0019747 with type OBO_REL:is_a
  * Copied GO:0010794 to GO:0019408 with type regulates
  * Copied GO:0010794 to GO:0046890 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010794
* Populated new object GO:0010795 (macro)
  * Changed name of GO:0010795 from "<new term>" to "regulation of ubiquinone biosynthetic process"
  * Set definition of GO:0010795 to "Any process that modulates the frequency, rate or extent of ubiquinone biosynthesis. Ubiquinone biosynthesis consists of the chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme."
  * Added definition dbxref GOC:dph to GO:0010795
  * Added definition dbxref GOC:tb to GO:0010795
  * Copied GO:0010795 to GO:0006744 with type regulates
  * Copied GO:0010795 to GO:0051196 with type OBO_REL:is_a
  * Copied GO:0010795 to GO:0031326 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010795
* Populated new object GO:0010796 (macro)
  * Changed name of GO:0010796 from "<new term>" to "regulation of multivesicular body size"
  * Set definition of GO:0010796 to "Any process that modulates the volume of a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles."
  * Added definition dbxref GOC:dph to GO:0010796
  * Added definition dbxref GOC:jp to GO:0010796
  * Added definition dbxref GOC:tb to GO:0010796
  * Copied GO:0010796 to GO:0051036 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010796
* Populated new object GO:0010797 (macro)
  * Changed name of GO:0010797 from "<new term>" to "regulation of multivesicular body size involved in endosome transport"
  * Set definition of GO:0010797 to "Any process that modulates the volume of a multivesicular body as part of the directed movement of substances from endosomes to lysosomes or vacuoles."
  * Added definition dbxref GOC:dph to GO:0010797
  * Added definition dbxref GOC:tb to GO:0010797
  * Copied GO:0010797 to GO:0032509 with type part_of
  * Copied GO:0010797 to GO:0010796 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010797
* Populated new object GO:0010798 (macro)
  * Changed name of GO:0010798 from "<new term>" to "regulation of multivesicular body size involved in ubiquitin-dependent protein catabolism"
  * Set definition of GO:0010798 to "Any process that modulates the volume of a multivesicular body as part of the chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin."
  * Added definition dbxref GOC:dph to GO:0010798
  * Added definition dbxref GOC:tb to GO:0010798
  * Copied GO:0010798 to GO:0010796 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010798
* Populated new object GO:0010799 (macro)
  * Changed name of GO:0010799 from "<new term>" to "regulation of peptidyl-threonine phosphorylation"
  * Set definition of GO:0010799 to "Any process that modulates the frequency, rate or extent of peptidyl-threonine phosphorylation. Peptidyl-threonine phosphorylation is the posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine."
  * Added definition dbxref GOC:dph to GO:0010799
  * Added definition dbxref GOC:tb to GO:0010799
  * Copied GO:0010799 to GO:0001932 with type OBO_REL:is_a
  * Copied GO:0010799 to GO:0018107 with type regulates
  * Assigned namespace "biological_process" to GO:0010799
* Populated new object GO:0010800 (macro)
  * Changed name of GO:0010800 from "<new term>" to "positive regulation of peptidyl-threonine phosphorylation"
  * Set definition of GO:0010800 to "Any process that increases the frequency, rate or extent of peptidyl-threonine phosphorylation. Peptidyl-threonine phosphorylation is the posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine."
  * Added definition dbxref GOC:dph to GO:0010800
  * Added definition dbxref GOC:tb to GO:0010800
  * Copied GO:0010800 to GO:0018107 with type positively_regulates
  * Copied GO:0010800 to GO:0001934 with type OBO_REL:is_a
  * Copied GO:0010800 to GO:0010799 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010800
* Populated new object GO:0010801 (macro)
  * Changed name of GO:0010801 from "<new term>" to "negative regulation of peptidyl-threonine phosphorylation"
  * Set definition of GO:0010801 to "Any process that decreases the frequency, rate or extent of peptidyl-threonine phosphorylation. Peptidyl-threonine phosphorylation is the posttranslational phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine."
  * Added definition dbxref GOC:dph to GO:0010801
  * Added definition dbxref GOC:tb to GO:0010801
  * Copied GO:0010801 to GO:0018107 with type negatively_regulates
  * Copied GO:0010801 to GO:0010799 with type OBO_REL:is_a
  * Copied GO:0010801 to GO:0001933 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010801
* Copied GO:0008610 to GO:0006629 with type OBO_REL:is_a
* Changed name of GO:0043162 from "ubiquitin-dependent protein catabolic process via the multivesicular body pathway" to "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway"
* Changed definition of GO:0043162 from "The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with a ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation." to "The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation."