[Go-diff] GO update 10/31/2008

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.290 by 1.292

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060348
* Created object of type obo:TERM with id GO:0060349
* Created object of type obo:TERM with id GO:0060350
* Created object of type obo:TERM with id GO:0060351
* Populated new object GO:0060348 (macro)
  * Changed name of GO:0060348 from "<new term>" to "bone development"
  * Set definition of GO:0060348 to "The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components."
  * Added definition dbxref GOC:dph to GO:0060348
  * Copied GO:0060348 to GO:0048856 with type OBO_REL:is_a
  * Copied GO:0060348 to GO:0001501 with type part_of
  * Assigned namespace "biological_process" to GO:0060348
* Populated new object GO:0060349 (macro)
  * Changed name of GO:0060349 from "<new term>" to "bone morphogenesis"
  * Set definition of GO:0060349 to "The process by which bones are generated and organized. Morphogenesis pertains to the creation of form."
  * Added definition dbxref GOC:dph to GO:0060349
  * Copied GO:0060349 to GO:0009653 with type OBO_REL:is_a
  * Copied GO:0060349 to GO:0060348 with type part_of
  * Assigned namespace "biological_process" to GO:0060349
* Populated new object GO:0060350 (macro)
  * Changed name of GO:0060350 from "<new term>" to "endochondral bone morphogenesis"
  * Set definition of GO:0060350 to "The process by which bones are generated and organized as a result of the conversion of initial cartilaginous anlage into bone."
  * Added definition dbxref GOC:dph to GO:0060350
  * Added definition dbxref PMID:11680679 to GO:0060350
  * Copied GO:0060350 to GO:0060349 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060350
* Populated new object GO:0060351 (macro)
  * Changed name of GO:0060351 from "<new term>" to "cartilage development involved in endochondral bone morphogenesis"
  * Set definition of GO:0060351 to "The process whose specific outcome is the progression of the cartilage that will provide a scaffold for mineralization of endochondal bones."
  * Added definition dbxref GOC:dph to GO:0060351
  * Copied GO:0060351 to GO:0060350 with type part_of
  * Copied GO:0060351 to GO:0051216 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060351
* Deleted GO:0000713 --part_of--> GO:0006311
* Copied GO:0000713 to GO:0007127 with type part_of
* Copied GO:0000713 to GO:0006310 with type part_of
* Deleted GO:0000714 --part_of--> GO:0006311
* Copied GO:0000714 to GO:0007127 with type part_of
* Deleted GO:0000732 --part_of--> GO:0045003
* Copied GO:0000732 to GO:0006310 with type part_of
* Deleted GO:0001503 --OBO_REL:is_a--> GO:0031214
* Copied GO:0001503 to GO:0060348 with type part_of
* Copied GO:0001503 to GO:0032502 with type OBO_REL:is_a
* Copied GO:0001649 to GO:0030282 with type part_of
* Copied GO:0001958 to GO:0060350 with type part_of
* Changed name of GO:0007131 from "meiotic recombination" to "reciprocal meiotic recombination"
* Changed name of GO:0010520 from "regulation of meiotic recombination" to "regulation of reciprocal meiotic recombination"
* Changed name of GO:0010705 from "meiotic DNA double-strand break processing involved in meiotic recombination" to "meiotic DNA double-strand break processing involved in reciprocal meiotic recombination"
* Changed name of GO:0010772 from "meiotic DNA recombinase assembly involved in meiotic recombination" to "meiotic DNA recombinase assembly involved in reciprocal meiotic recombination"
* Changed name of GO:0010773 from "meiotic DNA recombinase activity involved in meiotic gene conversion" to "meiotic DNA recombinase assembly involved in meiotic gene conversion"
* Changed name of GO:0010774 from "meiotic strand invasion involved in meiotic recombination" to "meiotic strand invasion involved in reciprocal meiotic recombination"
* Copied GO:0010775 to GO:0006311 with type part_of
* Changed name of GO:0010777 from "meiotic mismatch repair involved in meiotic recombination" to "meiotic mismatch repair involved in reciprocal meiotic recombination"
* Changed name of GO:0010778 from "meiotic DNA repair synthesis involved in meiotic recombination" to "meiotic DNA repair synthesis involved in reciprocal meiotic recombination"
* Changed name of GO:0010780 from "meiotic DNA double-strand break formation involved in meiotic recombination" to "meiotic DNA double-strand break formation involved in reciprocal meiotic recombination"
* Deleted GO:0030282 --OBO_REL:is_a--> GO:0001503
* Copied GO:0030282 to GO:0031214 with type OBO_REL:is_a
* Copied GO:0030282 to GO:0001503 with type part_of
* Deleted GO:0042148 --part_of--> GO:0045003
* Copied GO:0042148 to GO:0006310 with type part_of
* Changed name of GO:0043931 from "ossification involved in skeletal development" to "ossification involved in bone morphogenesis"
* Added synonym "ossification involved in skeletal development" to GO:0043931
* Added general dbxref GOC:dph to synonym ossification involved in skeletal development of GO:0043931
* Changed synonym scope of GO:0043931 from "Related" to "Exact"
* Copied GO:0043931 to GO:0060349 with type part_of
* Changed name of GO:0045128 from "negative regulation of meiotic recombination" to "negative regulation of reciprocal meiotic recombination"
* Copied GO:0046849 to GO:0060348 with type part_of
* Copied GO:0048539 to GO:0060348 with type part_of