[Go-diff] GO update 09/12/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Sep 12 21:30:47 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.211 by 1.213

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010700
* Created object of type obo:TERM with id GO:0010701
* Created object of type obo:TERM with id GO:0010702
* Created object of type obo:TERM with id GO:0010703
* Created object of type obo:TERM with id GO:0034982
* Created object of type obo:TERM with id GO:0034983
* Created object of type obo:TERM with id GO:0034984
* Created object of type obo:TERM with id GO:0034985
* Populated new object GO:0010700 (macro)
  * Changed name of GO:0010700 from "<new term>" to "negative regulation of norepinephrine secretion"
  * Set definition of GO:0010700 to "Any process that decreases the frequency, rate or extent of the regulated release of norepinephrine."
  * Added definition dbxref GOC:dph to GO:0010700
  * Added definition dbxref GOC:tb to GO:0010700
  * Copied GO:0010700 to GO:0048243 with type negatively_regulates
  * Copied GO:0010700 to GO:0014061 with type OBO_REL:is_a
  * Copied GO:0010700 to GO:0033604 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010700
* Populated new object GO:0010701 (macro)
  * Changed name of GO:0010701 from "<new term>" to "positive regulation of norepinephrine secretion"
  * Set definition of GO:0010701 to "Any process that increases the frequency, rate or extent of the regulated release of norepinephrine."
  * Added definition dbxref GOC:dph to GO:0010701
  * Added definition dbxref GOC:tb to GO:0010701
  * Copied GO:0010701 to GO:0014061 with type OBO_REL:is_a
  * Copied GO:0010701 to GO:0048243 with type positively_regulates
  * Copied GO:0010701 to GO:0033605 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010701
* Populated new object GO:0010702 (macro)
  * Changed name of GO:0010702 from "<new term>" to "regulation of histolysis"
  * Set definition of GO:0010702 to "Any process that modulates the rate, frequency or extent of the breakdown of tissues; usually, if not always, accompanied by cell death."
  * Added definition dbxref GOC:dph to GO:0010702
  * Added definition dbxref GOC:rl to GO:0010702
  * Added definition dbxref GOC:tb to GO:0010702
  * Copied GO:0010702 to GO:0050793 with type OBO_REL:is_a
  * Copied GO:0010702 to GO:0007559 with type regulates
  * Assigned namespace "biological_process" to GO:0010702
* Populated new object GO:0010703 (macro)
  * Changed name of GO:0010703 from "<new term>" to "negative regulation of histolysis"
  * Set definition of GO:0010703 to "Any process that decreases the rate, frequency or extent of the breakdown of tissues; usually, if not always, accompanied by cell death."
  * Added definition dbxref GOC:dph to GO:0010703
  * Added definition dbxref GOC:rl to GO:0010703
  * Added definition dbxref GOC:tb to GO:0010703
  * Added synonym "down regulation of histolysis" to GO:0010703
  * Added general dbxref GOC:tb to synonym down regulation of histolysis of GO:0010703
  * Added general dbxref GOC:rl to synonym down regulation of histolysis of GO:0010703
  * Added general dbxref GOC:dph to synonym down regulation of histolysis of GO:0010703
  * Changed synonym scope of GO:0010703 from "Related" to "Exact"
  * Added synonym "down-regulation of histolysis" to GO:0010703
  * Added general dbxref GOC:tb to synonym down-regulation of histolysis of GO:0010703
  * Added general dbxref GOC:rl to synonym down-regulation of histolysis of GO:0010703
  * Added general dbxref GOC:dph to synonym down-regulation of histolysis of GO:0010703
  * Changed synonym scope of GO:0010703 from "Related" to "Exact"
  * Added synonym "downregulation of histolysis" to GO:0010703
  * Added general dbxref GOC:tb to synonym downregulation of histolysis of GO:0010703
  * Added general dbxref GOC:rl to synonym downregulation of histolysis of GO:0010703
  * Added general dbxref GOC:dph to synonym downregulation of histolysis of GO:0010703
  * Changed synonym scope of GO:0010703 from "Related" to "Exact"
  * Added synonym "inhibition of histolysis" to GO:0010703
  * Added general dbxref GOC:tb to synonym inhibition of histolysis of GO:0010703
  * Added general dbxref GOC:rl to synonym inhibition of histolysis of GO:0010703
  * Added general dbxref GOC:dph to synonym inhibition of histolysis of GO:0010703
  * Changed synonym scope of GO:0010703 from "Related" to "Narrow"
  * Copied GO:0010703 to GO:0007559 with type negatively_regulates
  * Copied GO:0010703 to GO:0010702 with type OBO_REL:is_a
  * Copied GO:0010703 to GO:0051093 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010703
* Populated new object GO:0034982 (macro)
  * Changed name of GO:0034982 from "<new term>" to "mitochondrial protein processing"
  * Set definition of GO:0034982 to "The posttranslational modification of proteins in the mitochondrion, including proteolytic cleavage of proteins that occurs during import into the mitochondrion."
  * Added definition dbxref GOC:mah to GO:0034982
  * Added synonym "mitochondrial protein modification" to GO:0034982
  * Copied GO:0034982 to GO:0016485 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034982
* Populated new object GO:0034983 (macro)
  * Changed name of GO:0034983 from "<new term>" to "peptidyl-lysine deacetylation"
  * Set definition of GO:0034983 to "The removal of an acetyl group from an acetylated lysine residue in a peptide or protein."
  * Added definition dbxref GOC:mah to GO:0034983
  * Added synonym "protein lysine acetylation" to GO:0034983
  * Copied GO:0034983 to GO:0018205 with type OBO_REL:is_a
  * Copied GO:0034983 to GO:0006476 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034983
* Populated new object GO:0034984 (macro)
  * Changed name of GO:0034984 from "<new term>" to "cellular response to DNA damage stimulus"
  * Set definition of GO:0034984 to "A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism."
  * Added definition dbxref GOC:mah to GO:0034984
  * Added synonym "cellular DNA damage response" to GO:0034984
  * Changed synonym scope of GO:0034984 from "Related" to "Exact"
  * Copied GO:0034984 to GO:0033554 with type OBO_REL:is_a
  * Copied GO:0034984 to GO:0006974 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0034984
* Populated new object GO:0034985 (macro)
  * Changed name of GO:0034985 from "<new term>" to "Ecsit-NDUFAF1 complex"
  * Set definition of GO:0034985 to "Any large protein complex that contains Ecsit and NDUFAF1, is located in the mitochondrion, and is involved in the assembly of complex I of the oxidative phosphorylation system. In mammalian cells, three complexes of approximately 500, 600, and 850 kDa containing the 45 kDa isoform of Ecsit and NDUFAF1 have been observed."
  * Added definition dbxref PMID:17344420 to GO:0034985
  * Copied GO:0034985 to GO:0044429 with type OBO_REL:is_a
  * Copied GO:0034985 to GO:0005759 with type part_of
  * Copied GO:0034985 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0034985
* Deleted GO:0006281 --OBO_REL:is_a--> GO:0006974
* Copied GO:0006281 to GO:0034984 with type OBO_REL:is_a
* Copied GO:0006626 to GO:0007005 with type part_of
* Changed synonym scope of GO:0006627 from "Exact" to "Broad"
* Deleted GO:0006627 --OBO_REL:is_a--> GO:0016485
* Copied GO:0006627 to GO:0034982 with type OBO_REL:is_a
* Deleted GO:0006839 --part_of--> GO:0007005
* Deleted GO:0006975 --OBO_REL:is_a--> GO:0006974
* Copied GO:0006975 to GO:0034984 with type OBO_REL:is_a
* Deleted GO:0014046 --OBO_REL:is_a--> GO:0046879
* Deleted GO:0014059 --OBO_REL:is_a--> GO:0046883
* Deleted GO:0014060 --OBO_REL:is_a--> GO:0046883
* Deleted GO:0014061 --OBO_REL:is_a--> GO:0046883
* Deleted GO:0031297 --OBO_REL:is_a--> GO:0006974
* Copied GO:0031297 to GO:0034984 with type OBO_REL:is_a
* Deleted GO:0032811 --OBO_REL:is_a--> GO:0046888
* Deleted GO:0032812 --OBO_REL:is_a--> GO:0046887
* Deleted GO:0033602 --OBO_REL:is_a--> GO:0046888
* Deleted GO:0033603 --OBO_REL:is_a--> GO:0046887
* Deleted GO:0033604 --OBO_REL:is_a--> GO:0046929
* Copied GO:0033604 to GO:0051048 with type OBO_REL:is_a
* Deleted GO:0033605 --OBO_REL:is_a--> GO:0001956
* Copied GO:0033605 to GO:0051047 with type OBO_REL:is_a
* Deleted GO:0042770 --OBO_REL:is_a--> GO:0006974
* Deleted GO:0042770 --OBO_REL:is_a--> GO:0033554
* Copied GO:0042770 to GO:0034984 with type OBO_REL:is_a
* Changed name of GO:0042775 from "organelle ATP synthesis coupled electron transport" to "mitochondrial ATP synthesis coupled electron transport"
* Added synonym "organelle ATP synthesis coupled electron transport" to GO:0042775
* Changed synonym scope of GO:0042775 from "Related" to "Broad"
* Copied GO:0043156 to GO:0033554 with type OBO_REL:is_a
* Deleted GO:0043247 --OBO_REL:is_a--> GO:0006974
* Copied GO:0043247 to GO:0034984 with type OBO_REL:is_a
* Deleted GO:0048242 --OBO_REL:is_a--> GO:0046879
* Deleted GO:0048243 --OBO_REL:is_a--> GO:0046879
* Deleted GO:0050432 --OBO_REL:is_a--> GO:0007269
* Copied GO:0050432 to GO:0046903 with type OBO_REL:is_a
* Deleted GO:0050433 --OBO_REL:is_a--> GO:0046928
* Copied GO:0050433 to GO:0051046 with type OBO_REL:is_a

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