[Go-diff] GO update 09/15/2008

Mon Sep 15 21:30:46 PDT 2008

OBODIFF of gene_ontology_write.obo version 1.213 by 1.215

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060306
* Created object of type obo:TERM with id GO:0060307
* Created object of type obo:TERM with id GO:0060308
* Created object of type obo:TERM with id GO:0060309
* Created object of type obo:TERM with id GO:0060310
* Created object of type obo:TERM with id GO:0060311
* Created object of type obo:TERM with id GO:0060312
* Created object of type obo:TERM with id GO:0060313
* Created object of type obo:TERM with id GO:0060314
* Created object of type obo:TERM with id GO:0060315
* Created object of type obo:TERM with id GO:0060316
* Populated new object GO:0060306 (macro)
  * Changed name of GO:0060306 from "<new term>" to "regulation of membrane repolarization"
  * Set definition of GO:0060306 to "Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential, usually from positive to negative."
  * Added definition dbxref GOC:dph to GO:0060306
  * Added definition dbxref GOC:tb to GO:0060306
  * Copied GO:0060306 to GO:0042391 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060306
* Populated new object GO:0060307 (macro)
  * Changed name of GO:0060307 from "<new term>" to "regulation of ventricular cardiomyocyte membrane repolarization"
  * Set definition of GO:0060307 to "Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential in a ventricular cardiomyocyte."
  * Added definition dbxref GOC:dph to GO:0060307
  * Added definition dbxref GOC:tb to GO:0060307
  * Added synonym "electrocardiogram T wave" to GO:0060307
  * Added general dbxref GOC:tb to synonym electrocardiogram T wave of GO:0060307
  * Added general dbxref GOC:dph to synonym electrocardiogram T wave of GO:0060307
  * Added synonym "regulation of ventricular cardiac muscle repolarization" to GO:0060307
  * Added general dbxref GOC:tb to synonym regulation of ventricular cardiac muscle repolarization of GO:0060307
  * Added general dbxref GOC:dph to synonym regulation of ventricular cardiac muscle repolarization of GO:0060307
  * Copied GO:0060307 to GO:0055117 with type OBO_REL:is_a
  * Copied GO:0060307 to GO:0060306 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060307
* Populated new object GO:0060308 (macro)
  * Changed name of GO:0060308 from "<new term>" to "GTP cyclohydrolase I regulator activity"
  * Set definition of GO:0060308 to "Modulates the activity of GTP cyclohydrolase I. GTP cyclohydrolase I activity catalyzes the reaction: GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate."
  * Added definition dbxref GOC:dph to GO:0060308
  * Added definition dbxref GOC:tb to GO:0060308
  * Copied GO:0060308 to GO:0030234 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0060308
* Populated new object GO:0060309 (macro)
  * Changed name of GO:0060309 from "<new term>" to "elastin catabolic process"
  * Set definition of GO:0060309 to "The chemical reactions and pathways resulting in the breakdown of elastin. Elastin is a glycoprotein which is randomly coiled and cross linked to form elastic fibres that are found in connective tissue."
  * Added definition dbxref GOC:dph to GO:0060309
  * Added definition dbxref GOC:tb to GO:0060309
  * Added synonym "elastin breakdown" to GO:0060309
  * Changed synonym scope of GO:0060309 from "Related" to "Exact"
  * Added synonym "elastin catabolism" to GO:0060309
  * Changed synonym scope of GO:0060309 from "Related" to "Exact"
  * Added synonym "elastin degradation" to GO:0060309
  * Changed synonym scope of GO:0060309 from "Related" to "Exact"
  * Copied GO:0060309 to GO:0051541 with type OBO_REL:is_a
  * Copied GO:0060309 to GO:0006516 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060309
* Populated new object GO:0060310 (macro)
  * Changed name of GO:0060310 from "<new term>" to "regulation of elastin catabolic process"
  * Set definition of GO:0060310 to "Any process that modulates the rate, frequency or extent of elastin catabolism, the chemical reactions and pathways resulting in the breakdown of elastin."
  * Added definition dbxref GOC:dph to GO:0060310
  * Added definition dbxref GOC:tb to GO:0060310
  * Added synonym "regulation of elastin breakdown" to GO:0060310
  * Added general dbxref GOC:tb to synonym regulation of elastin breakdown of GO:0060310
  * Added general dbxref GOC:dph to synonym regulation of elastin breakdown of GO:0060310
  * Added synonym "regulation of elastin catabolism" to GO:0060310
  * Added general dbxref GOC:tb to synonym regulation of elastin catabolism of GO:0060310
  * Added general dbxref GOC:dph to synonym regulation of elastin catabolism of GO:0060310
  * Changed synonym scope of GO:0060310 from "Related" to "Exact"
  * Added synonym "regulation of elastin degradation" to GO:0060310
  * Added general dbxref GOC:tb to synonym regulation of elastin degradation of GO:0060310
  * Added general dbxref GOC:dph to synonym regulation of elastin degradation of GO:0060310
  * Changed synonym scope of GO:0060310 from "Related" to "Exact"
  * Copied GO:0060310 to GO:0031329 with type OBO_REL:is_a
  * Copied GO:0060310 to GO:0060309 with type regulates
  * Copied GO:0060310 to GO:0060255 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060310
* Populated new object GO:0060311 (macro)
  * Changed name of GO:0060311 from "<new term>" to "negative regulation of elastin catabolic process"
  * Set definition of GO:0060311 to "Any process that decreases the rate, frequency or extent of elastin catabolism, the chemical reactions and pathways resulting in the breakdown of elastin."
  * Added definition dbxref GOC:dph to GO:0060311
  * Added definition dbxref GOC:tb to GO:0060311
  * Added synonym "down-regulation of elastin catabolic process" to GO:0060311
  * Changed synonym scope of GO:0060311 from "Related" to "Exact"
  * Added synonym "negative regulation of elastin breakdown" to GO:0060311
  * Changed synonym scope of GO:0060311 from "Related" to "Exact"
  * Added synonym "negative regulation of elastin catabolism" to GO:0060311
  * Changed synonym scope of GO:0060311 from "Related" to "Exact"
  * Added synonym "negative regulation of elastin degradation" to GO:0060311
  * Changed synonym scope of GO:0060311 from "Related" to "Exact"
  * Copied GO:0060311 to GO:0060309 with type negatively_regulates
  * Copied GO:0060311 to GO:0010605 with type OBO_REL:is_a
  * Copied GO:0060311 to GO:0031330 with type OBO_REL:is_a
  * Copied GO:0060311 to GO:0060310 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060311
* Populated new object GO:0060312 (macro)
  * Changed name of GO:0060312 from "<new term>" to "regulation of blood vessel remodeling"
  * Set definition of GO:0060312 to "Any process that modulates the rate, frequency or extent of blood vessel remodeling, the reorganization or renovation of existing blood vessels."
  * Added definition dbxref GOC:dph to GO:0060312
  * Added definition dbxref GOC:tb to GO:0060312
  * Copied GO:0060312 to GO:0034103 with type OBO_REL:is_a
  * Copied GO:0060312 to GO:0001974 with type regulates
  * Assigned namespace "biological_process" to GO:0060312
* Populated new object GO:0060313 (macro)
  * Changed name of GO:0060313 from "<new term>" to "negative regulation of blood vessel remodeling"
  * Set definition of GO:0060313 to "Any process that decreases the rate, frequency or extent of blood vessel remodeling, the reorganization or renovation of existing blood vessels."
  * Added definition dbxref GOC:dph to GO:0060313
  * Added definition dbxref GOC:tb to GO:0060313
  * Added synonym "down-regulation of blood vessel remodeling" to GO:0060313
  * Added general dbxref GOC:tb to synonym down-regulation of blood vessel remodeling of GO:0060313
  * Added general dbxref GOC:dph to synonym down-regulation of blood vessel remodeling of GO:0060313
  * Changed synonym scope of GO:0060313 from "Related" to "Exact"
  * Added synonym "inhibition of blood vessel remodeling" to GO:0060313
  * Added general dbxref GOC:tb to synonym inhibition of blood vessel remodeling of GO:0060313
  * Added general dbxref GOC:dph to synonym inhibition of blood vessel remodeling of GO:0060313
  * Changed synonym scope of GO:0060313 from "Related" to "Narrow"
  * Copied GO:0060313 to GO:0060312 with type OBO_REL:is_a
  * Copied GO:0060313 to GO:0001974 with type negatively_regulates
  * Copied GO:0060313 to GO:0034104 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060313
* Populated new object GO:0060314 (macro)
  * Changed name of GO:0060314 from "<new term>" to "regulation of ryanodine-sensitive calcium-release channel activity"
  * Set definition of GO:0060314 to "Any process that modulates the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts."
  * Added definition dbxref GOC:dph to GO:0060314
  * Added definition dbxref GOC:tb to GO:0060314
  * Copied GO:0060314 to GO:0032412 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060314
* Populated new object GO:0060315 (macro)
  * Changed name of GO:0060315 from "<new term>" to "negative regulation of ryanodine-sensitive calcium-release channel activity"
  * Set definition of GO:0060315 to "Any process that decreases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts."
  * Added definition dbxref GOC:dph to GO:0060315
  * Added definition dbxref GOC:tb to GO:0060315
  * Copied GO:0060315 to GO:0060314 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060315
* Populated new object GO:0060316 (macro)
  * Changed name of GO:0060316 from "<new term>" to "positive regulation of ryanodine-sensitive calcium-release channel activity"
  * Set definition of GO:0060316 to "Any process that increases the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts."
  * Added definition dbxref GOC:dph to GO:0060316
  * Added definition dbxref GOC:tb to GO:0060316
  * Copied GO:0060316 to GO:0060314 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060316
* Set definition of GO:0005219 to "Catalysis of the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts."
* Added definition dbxref GOC:dph to GO:0005219
* Added definition dbxref GOC:tb to GO:0005219
* Copied GO:0006516 to GO:0044265 with type OBO_REL:is_a