[Go-diff] GO update 09/16/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Tue Sep 16 21:30:46 PDT 2008


OBODIFF of gene_ontology_write.obo version 1.215 by 1.216

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043936
* Populated new object GO:0043936 (macro)
  * Changed name of GO:0043936 from "<new term>" to "cellular component maintenance"
  * Set definition of GO:0043936 to "The organization process by which a cellular component is preserved in a stable functional or structural state."
  * Added definition dbxref GOC:dph to GO:0043936
  * Added definition dbxref GOC:jl to GO:0043936
  * Added definition dbxref GOC:mah to GO:0043936
  * Copied GO:0043936 to GO:0016043 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043936
* Copied GO:0032984 to GO:0022411 with type OBO_REL:is_a
* Changed definition of GO:0034331 from "The maintenance of junctions between cells or between a cell and its substrate." to "The organization process by which a cell junction is preserved in a stable functional or structural state. A cell junction is a specialized region of connection between two cells or between a cell and the extracellular matrix."
* Copied GO:0034331 to GO:0043936 with type OBO_REL:is_a
* Changed name of GO:0034332 from "adherens junction assembly and maintenance" to "adherens junction organization"
* Changed definition of GO:0034332 from "The assembly and maintenance of an adherens junction." to "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments."
* Added definition dbxref GOC:dph to GO:0034332
* Added definition dbxref GOC:jl to GO:0034332
* Added synonym "adherens junction assembly and maintenance" to GO:0034332
* Changed synonym scope of GO:0034332 from "Related" to "Exact"
* Added synonym "adherens junction organisation" to GO:0034332
* Changed synonym scope of GO:0034332 from "Related" to "Exact"
* Changed definition of GO:0034333 from "The aggregation, arrangement and bonding together of a set of components to form an adherens junction." to "The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments."
* Changed definition of GO:0034334 from "The maintenance of an adherens junction." to "The maintenance of an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments."
* Copied GO:0043933 to GO:0016043 with type OBO_REL:is_a
* Changed name of GO:0051128 from "regulation of cellular component organization and biogenesis" to "regulation of cellular component organization"
* Deleted synonym "regulation of cell organisation and biogenesis" from GO:0051128
* Deleted synonym "regulation of cell organization and biogenesis" from GO:0051128
* Deleted synonym "regulation of cellular component organisation and biogenesis" from GO:0051128
* Added synonym "regulation of cell organisation" to GO:0051128
* Changed synonym scope of GO:0051128 from "Related" to "Exact"
* Added synonym "regulation of cell organization" to GO:0051128
* Changed synonym scope of GO:0051128 from "Related" to "Exact"
* Added synonym "regulation of cellular component organisation" to GO:0051128
* Changed synonym scope of GO:0051128 from "Related" to "Exact"
* Added synonym "regulation of cellular component organization and biogenesis" to GO:0051128
* Changed synonym scope of GO:0051128 from "Related" to "Exact"
* Changed name of GO:0051129 from "negative regulation of cellular component organization and biogenesis" to "negative regulation of cellular component organization"
* Deleted synonym "down regulation of cell organization and biogenesis" from GO:0051129
* Deleted synonym "down-regulation of cell organization and biogenesis" from GO:0051129
* Deleted synonym "downregulation of cell organization and biogenesis" from GO:0051129
* Deleted synonym "negative regulation of cell organisation and biogenesis" from GO:0051129
* Added synonym "down regulation of cell organization" to GO:0051129
* Changed synonym scope of GO:0051129 from "Related" to "Exact"
* Added synonym "down-regulation of cell organization" to GO:0051129
* Changed synonym scope of GO:0051129 from "Related" to "Exact"
* Added synonym "downregulation of cell organization" to GO:0051129
* Changed synonym scope of GO:0051129 from "Related" to "Exact"
* Added synonym "negative regulation of cell organisation" to GO:0051129
* Changed synonym scope of GO:0051129 from "Related" to "Exact"
* Added synonym "negative regulation of cellular component organization and biogenesis" to GO:0051129
* Changed synonym scope of GO:0051129 from "Related" to "Exact"
* Changed name of GO:0051130 from "positive regulation of cellular component organization and biogenesis" to "positive regulation of cellular component organization"
* Deleted synonym "activation of cell organization and biogenesis" from GO:0051130
* Deleted synonym "positive regulation of cell organisation and biogenesis" from GO:0051130
* Deleted synonym "stimulation of cell organization and biogenesis" from GO:0051130
* Deleted synonym "up-regulation of cell organization and biogenesis" from GO:0051130
* Deleted synonym "upregulation of cell organization and biogenesis" from GO:0051130
* Added synonym "activation of cell organization" to GO:0051130
* Changed synonym scope of GO:0051130 from "Related" to "Narrow"
* Added synonym "positive regulation of cell organisation" to GO:0051130
* Changed synonym scope of GO:0051130 from "Related" to "Exact"
* Added synonym "positive regulation of cellular component organization and biogenesis" to GO:0051130
* Changed synonym scope of GO:0051130 from "Related" to "Exact"
* Added synonym "stimulation of cell organization" to GO:0051130
* Changed synonym scope of GO:0051130 from "Related" to "Narrow"
* Added synonym "up-regulation of cell organization" to GO:0051130
* Changed synonym scope of GO:0051130 from "Related" to "Exact"
* Added synonym "upregulation of cell organization" to GO:0051130
* Changed synonym scope of GO:0051130 from "Related" to "Exact"
* Copied GO:0065003 to GO:0022607 with type OBO_REL:is_a


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