[Go-diff] GO update 09/26/2008

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Sep 26 21:30:46 PDT 2008 

OBODIFF of gene_ontology_write.obo version 1.234 by 1.237

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010724
* Created object of type obo:TERM with id GO:0010725
* Created object of type obo:TERM with id GO:0010726
* Created object of type obo:TERM with id GO:0010727
* Created object of type obo:TERM with id GO:0010728
* Created object of type obo:TERM with id GO:0010729
* Created object of type obo:TERM with id GO:0010730
* Created object of type obo:TERM with id GO:0010731
* Created object of type obo:TERM with id GO:0010732
* Created object of type obo:TERM with id GO:0010733
* Created object of type obo:TERM with id GO:0010734
* Created object of type obo:TERM with id GO:0060322
* Created object of type obo:TERM with id GO:0060323
* Created object of type obo:TERM with id GO:0060324
* Created object of type obo:TERM with id GO:0060325
* Populated new object GO:0010724 (macro)
  * Changed name of GO:0010724 from "<new term>" to "regulation of definitive erythrocyte differentiation"
  * Set definition of GO:0010724 to "Any process that modulates the rate, frequency, or extent of definitive erythrocyte differentiation. Definitive erythrocyte differentiation occurs as part of the process of definitive hemopoiesis."
  * Added definition dbxref GOC:add to GO:0010724
  * Added definition dbxref GOC:dph to GO:0010724
  * Added definition dbxref GOC:tb to GO:0010724
  * Added synonym "regulation of definitive erythropoiesis" to GO:0010724
  * Added general dbxref GOC:add to synonym regulation of definitive erythropoiesis of GO:0010724
  * Added general dbxref GOC:tb to synonym regulation of definitive erythropoiesis of GO:0010724
  * Added general dbxref GOC:dph to synonym regulation of definitive erythropoiesis of GO:0010724
  * Changed synonym scope of GO:0010724 from "Related" to "Exact"
  * Copied GO:0010724 to GO:0045646 with type OBO_REL:is_a
  * Copied GO:0010724 to GO:0060318 with type regulates
  * Assigned namespace "biological_process" to GO:0010724
* Populated new object GO:0010725 (macro)
  * Changed name of GO:0010725 from "<new term>" to "regulation of primitive erythrocyte differentiation"
  * Set definition of GO:0010725 to "Any process that modulates the rate, frequency, or extent of primitive erythrocyte differentiation. Primitive erythrocyte differentiation occurs as part of the process of primitive hemopoiesis."
  * Added definition dbxref GOC:add to GO:0010725
  * Added definition dbxref GOC:dph to GO:0010725
  * Added definition dbxref GOC:tb to GO:0010725
  * Added synonym "regulation of primitive erythropoeisis" to GO:0010725
  * Added general dbxref GOC:add to synonym regulation of primitive erythropoeisis of GO:0010725
  * Added general dbxref GOC:tb to synonym regulation of primitive erythropoeisis of GO:0010725
  * Added general dbxref GOC:dph to synonym regulation of primitive erythropoeisis of GO:0010725
  * Changed synonym scope of GO:0010725 from "Related" to "Exact"
  * Copied GO:0010725 to GO:0060319 with type regulates
  * Copied GO:0010725 to GO:0045646 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010725
* Populated new object GO:0010726 (macro)
  * Changed name of GO:0010726 from "<new term>" to "positive regulation of hydrogen peroxide metabolic process"
  * Set definition of GO:0010726 to "Any process that increases the frequency, rate or extent of the chemical reactions involving hydrogen peroxide."
  * Added definition dbxref GOC:dph to GO:0010726
  * Added definition dbxref GOC:hjd to GO:0010726
  * Added definition dbxref GOC:tb to GO:0010726
  * Added synonym "positive regulation of hydrogen peroxide metabolism" to GO:0010726
  * Added general dbxref GOC:tb to synonym positive regulation of hydrogen peroxide metabolism of GO:0010726
  * Added general dbxref GOC:hjd to synonym positive regulation of hydrogen peroxide metabolism of GO:0010726
  * Added general dbxref GOC:dph to synonym positive regulation of hydrogen peroxide metabolism of GO:0010726
  * Changed synonym scope of GO:0010726 from "Related" to "Exact"
  * Copied GO:0010726 to GO:0042743 with type positively_regulates
  * Copied GO:0010726 to GO:0010670 with type OBO_REL:is_a
  * Copied GO:0010726 to GO:0010310 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010726
* Populated new object GO:0010727 (macro)
  * Changed name of GO:0010727 from "<new term>" to "negative regulation of hydrogen peroxide metabolic process"
  * Set definition of GO:0010727 to "Any process that decreases the frequency, rate or extent of the chemical reactions involving hydrogen peroxide."
  * Added definition dbxref GOC:dph to GO:0010727
  * Added definition dbxref GOC:hjd to GO:0010727
  * Added definition dbxref GOC:tb to GO:0010727
  * Added synonym "negative regulation of hydrogen peroxide metabolism" to GO:0010727
  * Added general dbxref GOC:tb to synonym negative regulation of hydrogen peroxide metabolism of GO:0010727
  * Added general dbxref GOC:hjd to synonym negative regulation of hydrogen peroxide metabolism of GO:0010727
  * Added general dbxref GOC:dph to synonym negative regulation of hydrogen peroxide metabolism of GO:0010727
  * Changed synonym scope of GO:0010727 from "Related" to "Exact"
  * Copied GO:0010727 to GO:0010671 with type OBO_REL:is_a
  * Copied GO:0010727 to GO:0042743 with type negatively_regulates
  * Copied GO:0010727 to GO:0010310 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010727
* Populated new object GO:0010728 (macro)
  * Changed name of GO:0010728 from "<new term>" to "regulation of hydrogen peroxide biosynthetic process"
  * Set definition of GO:0010728 to "Any process that modulates the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA."
  * Added definition dbxref GOC:dph to GO:0010728
  * Added definition dbxref GOC:hjd to GO:0010728
  * Added definition dbxref GOC:tb to GO:0010728
  * Added synonym "regulation of hydrogen peroxide biosynthesis" to GO:0010728
  * Added general dbxref GOC:tb to synonym regulation of hydrogen peroxide biosynthesis of GO:0010728
  * Added general dbxref GOC:hjd to synonym regulation of hydrogen peroxide biosynthesis of GO:0010728
  * Added general dbxref GOC:dph to synonym regulation of hydrogen peroxide biosynthesis of GO:0010728
  * Changed synonym scope of GO:0010728 from "Related" to "Exact"
  * Copied GO:0010728 to GO:0010310 with type OBO_REL:is_a
  * Copied GO:0010728 to GO:0050665 with type regulates
  * Assigned namespace "biological_process" to GO:0010728
* Populated new object GO:0010729 (macro)
  * Changed name of GO:0010729 from "<new term>" to "positive regulation of hydrogen peroxide biosynthetic process"
  * Set definition of GO:0010729 to "Any process that increases the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA."
  * Added definition dbxref GOC:dph to GO:0010729
  * Added definition dbxref GOC:hjd to GO:0010729
  * Added definition dbxref GOC:tb to GO:0010729
  * Added synonym "positive regulation of hydrogen peroxide biosynthesis" to GO:0010729
  * Added general dbxref GOC:tb to synonym positive regulation of hydrogen peroxide biosynthesis of GO:0010729
  * Added general dbxref GOC:hjd to synonym positive regulation of hydrogen peroxide biosynthesis of GO:0010729
  * Added general dbxref GOC:dph to synonym positive regulation of hydrogen peroxide biosynthesis of GO:0010729
  * Changed synonym scope of GO:0010729 from "Related" to "Exact"
  * Copied GO:0010729 to GO:0050665 with type positively_regulates
  * Copied GO:0010729 to GO:0010728 with type OBO_REL:is_a
  * Copied GO:0010729 to GO:0010726 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010729
* Populated new object GO:0010730 (macro)
  * Changed name of GO:0010730 from "<new term>" to "negative regulation of hydrogen peroxide biosynthetic process"
  * Set definition of GO:0010730 to "Any process that decreases the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA."
  * Added definition dbxref GOC:dph to GO:0010730
  * Added definition dbxref GOC:hjd to GO:0010730
  * Added definition dbxref GOC:tb to GO:0010730
  * Added synonym "negative regulation of hydrogen peroxide biosynthesis" to GO:0010730
  * Added general dbxref GOC:tb to synonym negative regulation of hydrogen peroxide biosynthesis of GO:0010730
  * Added general dbxref GOC:hjd to synonym negative regulation of hydrogen peroxide biosynthesis of GO:0010730
  * Added general dbxref GOC:dph to synonym negative regulation of hydrogen peroxide biosynthesis of GO:0010730
  * Changed synonym scope of GO:0010730 from "Related" to "Exact"
  * Copied GO:0010730 to GO:0010728 with type OBO_REL:is_a
  * Copied GO:0010730 to GO:0010727 with type OBO_REL:is_a
  * Copied GO:0010730 to GO:0050665 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0010730
* Populated new object GO:0010731 (macro)
  * Changed name of GO:0010731 from "<new term>" to "protein amino acid glutathionylation"
  * Set definition of GO:0010731 to "The protein modification process by which a glutathione molecule is added to a protein amino acid through a disulfide linkage."
  * Added definition dbxref GOC:dph to GO:0010731
  * Added definition dbxref GOC:rl to GO:0010731
  * Added definition dbxref GOC:tb to GO:0010731
  * Copied GO:0010731 to GO:0006464 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010731
* Populated new object GO:0010732 (macro)
  * Changed name of GO:0010732 from "<new term>" to "regulation of protein amino acid glutathionylation"
  * Set definition of GO:0010732 to "Any process that modulates the rate, frequency, or extent of protein amino acid glutathionylation. Protein amino acid glutathionylation is the protein modification process by which a glutathione molecule is added to a protein amino acid through a disulfide linkage."
  * Added definition dbxref GOC:dph to GO:0010732
  * Added definition dbxref GOC:rl to GO:0010732
  * Added definition dbxref GOC:tb to GO:0010732
  * Copied GO:0010732 to GO:0010731 with type regulates
  * Copied GO:0010732 to GO:0031399 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010732
* Populated new object GO:0010733 (macro)
  * Changed name of GO:0010733 from "<new term>" to "positive regulation of protein amino acid glutathionylation"
  * Set definition of GO:0010733 to "Any process that increases the rate, frequency, or extent of protein amino acid glutathionylation. Protein amino acid glutathionylation is the protein modification process by which a glutathione molecule is added to a protein amino acid through a disulfide linkage."
  * Added definition dbxref GOC:dph to GO:0010733
  * Added definition dbxref GOC:rl to GO:0010733
  * Added definition dbxref GOC:tb to GO:0010733
  * Copied GO:0010733 to GO:0010732 with type OBO_REL:is_a
  * Copied GO:0010733 to GO:0031401 with type OBO_REL:is_a
  * Copied GO:0010733 to GO:0010731 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010733
* Populated new object GO:0010734 (macro)
  * Changed name of GO:0010734 from "<new term>" to "negative regulation of protein amino acid glutathionylation"
  * Set definition of GO:0010734 to "Any process that decreases the rate, frequency, or extent of protein amino acid glutathionylation. Protein amino acid glutathionylation is the protein modification process by which a glutathione molecule is added to a protein amino acid through a disulfide linkage."
  * Added definition dbxref GOC:dph to GO:0010734
  * Added definition dbxref GOC:rl to GO:0010734
  * Added definition dbxref GOC:tb to GO:0010734
  * Copied GO:0010734 to GO:0010731 with type negatively_regulates
  * Copied GO:0010734 to GO:0010732 with type OBO_REL:is_a
  * Copied GO:0010734 to GO:0031400 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010734
* Populated new object GO:0060322 (macro)
  * Changed name of GO:0060322 from "<new term>" to "head development"
  * Set definition of GO:0060322 to "The biological process whose specific outcome is the progression of a head from an initial condition to its mature state. The head is the anterior-most division of the body."
  * Added definition dbxref GOC:dph to GO:0060322
  * Copied GO:0060322 to GO:0048856 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060322
* Populated new object GO:0060323 (macro)
  * Changed name of GO:0060323 from "<new term>" to "head morphogenesis"
  * Set definition of GO:0060323 to "The process by which the anatomical structures of the head are generated and organized. The head is the anterior-most division of the body."
  * Added definition dbxref GOC:dph to GO:0060323
  * Copied GO:0060323 to GO:0010171 with type part_of
  * Copied GO:0060323 to GO:0060322 with type part_of
  * Copied GO:0060323 to GO:0009653 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060323
* Populated new object GO:0060324 (macro)
  * Changed name of GO:0060324 from "<new term>" to "face development"
  * Set definition of GO:0060324 to "The biological process whose specific outcome is the progression of a face from an initial condition to its mature state. The face is the ventral division of the head."
  * Added definition dbxref GOC:dph to GO:0060324
  * Copied GO:0060324 to GO:0060322 with type part_of
  * Copied GO:0060324 to GO:0048856 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060324
* Populated new object GO:0060325 (macro)
  * Changed name of GO:0060325 from "<new term>" to "face morphogenesis"
  * Set definition of GO:0060325 to "The process by which the anatomical structures of the face are generated and organized. The face is the ventral division of the head."
  * Added definition dbxref GOC:dph to GO:0060325
  * Copied GO:0060325 to GO:0009653 with type OBO_REL:is_a
  * Copied GO:0060325 to GO:0060323 with type part_of
  * Copied GO:0060325 to GO:0060324 with type part_of
  * Assigned namespace "biological_process" to GO:0060325
* Changed definition of GO:0003678 from "Catalysis of the unwinding of a DNA duplex." to "Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA helix."
* Changed definition of GO:0003724 from "Catalysis of the unwinding of an RNA helix." to "Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a RNA helix."
* Added definition dbxref GOC:mah to GO:0003724
* Changed definition of GO:0004386 from "Catalysis of the unwinding of a DNA or RNA duplex." to "Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA or RNA helix."
* Added definition dbxref GOC:mah to GO:0004386
* Deleted GO:0004386 --OBO_REL:is_a--> GO:0003824
* Copied GO:0004386 to GO:0017111 with type OBO_REL:is_a
* Added synonym "DNA organisation" to GO:0006323
* Changed synonym scope of GO:0006323 from "Related" to "Exact"
* Added synonym "DNA organization" to GO:0006323
* Changed synonym scope of GO:0006323 from "Related" to "Exact"
* Deleted GO:0007044 --OBO_REL:is_a--> GO:0007028
* Changed name of GO:0009663 from "plasmodesma organization and biogenesis" to "plasmodesma organization"
* Added synonym "plasmodesma organization and biogenesis" to GO:0009663
* Copied GO:0010310 to GO:0080010 with type OBO_REL:is_a
* Copied GO:0016043 to GO:0048532 with type OBO_REL:is_a
* Changed name of GO:0030719 from "P granule organization and biogenesis" to "P granule organization"
* Added synonym "P granule organization and biogenesis" to GO:0030719
* Changed definition of GO:0033677 from "Catalysis of the unwinding of a DNA/RNA duplex, i.e. a double helix in which a strand of DNA pairs with a complementary strand of RNA." to "Catalysis of the reaction: NTP + H2O = NDP + phosphate to drive the unwinding of a DNA/RNA duplex, i.e. a double helix in which a strand of DNA pairs with a complementary strand of RNA."
* Changed name of GO:0045230 from "capsule organization and biogenesis" to "capsule organization"
* Added synonym "capsule organization and biogenesis" to GO:0045230
* Changed name of GO:0048532 from "organization of an anatomical structure" to "anatomical structure organization"
* Changed definition of GO:0048532 from "The process that gives rise to the structural organization of an organ or tissue. This process pertains to the physical shaping of a rudimentary structure." to "The process that gives rise to the structural organization of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome."
* Deleted synonym "anatomical structure organization" from GO:0048532
* Added synonym "organization of an anatomical structure" to GO:0048532
* Changed synonym scope of GO:0048532 from "Related" to "Exact"
* Copied GO:0060313 to GO:0051093 with type OBO_REL:is_a
* Deleted definition dbxref GOC:adiehl from GO:0060318
* Added definition dbxref GOC:add to GO:0060318
* Changed definition of GO:0070035 from "Catalysis of the reaction: purine NTP + H2O = purine NTP + phosphate to drive the unwinding of a DNA or RNA helix." to "Catalysis of the reaction: purine NTP + H2O = purine NDP + phosphate to drive the unwinding of a DNA or RNA helix."
* Deleted GO:0070035 --OBO_REL:is_a--> GO:0042623

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