[Go-diff] GO update 04/03/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Apr 3 21:30:54 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.511 by 1.515

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060479
* Created object of type obo:TERM with id GO:0060480
* Created object of type obo:TERM with id GO:0060481
* Created object of type obo:TERM with id GO:0060482
* Created object of type obo:TERM with id GO:0060483
* Created object of type obo:TERM with id GO:0060484
* Created object of type obo:TERM with id GO:0060485
* Created object of type obo:TERM with id GO:0060486
* Created object of type obo:TERM with id GO:0060487
* Created object of type obo:TERM with id GO:0060488
* Created object of type obo:TERM with id GO:0060489
* Created object of type obo:TERM with id GO:0060490
* Populated new object GO:0060479 (macro)
  * Changed name of GO:0060479 from "<new term>" to "lung cell differentiation"
  * Set definition of GO:0060479 to "The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features of a mature cell found in the lung. Differentiation includes the processes involved in commitment of a cell to a specific fate."
  * Added definition dbxref GOC:dph to GO:0060479
  * Added definition dbxref GOC:mtg_lung to GO:0060479
  * Added synonym "pulmonary cell differentiation" to GO:0060479
  * Added general dbxref GOC:dph to synonym pulmonary cell differentiation of GO:0060479
  * Changed synonym scope of GO:0060479 from "Related" to "Exact"
  * Copied GO:0060479 to GO:0030154 with type OBO_REL:is_a
  * Copied GO:0060479 to GO:0030324 with type part_of
  * Assigned namespace "biological_process" to GO:0060479
* Populated new object GO:0060480 (macro)
  * Changed name of GO:0060480 from "<new term>" to "lung goblet cell differentation"
  * Set definition of GO:0060480 to "The process whereby a relatively unspecialized cell acquires specialized features of a lung goblet cell. A goblet cell is a cell of the epithelial lining that produces and secretes mucins."
  * Added definition dbxref GOC:dph to GO:0060480
  * Added definition dbxref GOC:mtg_lung to GO:0060480
  * Added synonym "pulmonary goblet cell differentiation" to GO:0060480
  * Changed synonym scope of GO:0060480 from "Related" to "Exact"
  * Copied GO:0060480 to GO:0060481 with type part_of
  * Copied GO:0060480 to GO:0060487 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060480
* Populated new object GO:0060481 (macro)
  * Changed name of GO:0060481 from "<new term>" to "lobar bronchus epithelium development"
  * Set definition of GO:0060481 to "The biological process whose specific outcome is the progression of a lobar bronchus epithelium from an initial condition to its mature state. This process begins with the formation of the lobar bronchus epithelium and ends with the mature structure. The lobar bronchus epithelium is the tissue made up of epithelial cells that lines the inside of the lobar bronchus."
  * Added definition dbxref GOC:dph to GO:0060481
  * Added definition dbxref GOC:mtg_lung to GO:0060481
  * Copied GO:0060481 to GO:0060482 with type part_of
  * Copied GO:0060481 to GO:0060428 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060481
* Populated new object GO:0060482 (macro)
  * Changed name of GO:0060482 from "<new term>" to "lobar bronchus development"
  * Set definition of GO:0060482 to "The biological process whose specific outcome is the progression of a lobar bronchus from an initial condition to its mature state. This process begins with the formation of the lobar bronchus and ends with the mature structure. The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi."
  * Added definition dbxref GOC:dph to GO:0060482
  * Added definition dbxref GOC:mtg_lung to GO:0060482
  * Copied GO:0060482 to GO:0030324 with type part_of
  * Copied GO:0060482 to GO:0048856 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060482
* Populated new object GO:0060483 (macro)
  * Changed name of GO:0060483 from "<new term>" to "lobar bronchus mesenchyme development"
  * Set definition of GO:0060483 to "The biological process whose specific outcome is the progression of a lobar bronchus mesenchyme from an initial condition to its mature state. This process begins with the formation of the lobar bronchus mesenchyme and ends with the mature structure. The lobar bronchus mesenchyme is the mass of tissue composed of mesenchymal cells in the lobar bronchus."
  * Added definition dbxref GOC:dph to GO:0060483
  * Added definition dbxref GOC:mtg_lung to GO:0060483
  * Copied GO:0060483 to GO:0060482 with type part_of
  * Copied GO:0060483 to GO:0060484 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060483
* Populated new object GO:0060484 (macro)
  * Changed name of GO:0060484 from "<new term>" to "lung-associated mesenchyme development"
  * Set definition of GO:0060484 to "The biological process whose specific outcome is the progression of a lung-associated mesenchyme from an initial condition to its mature state. This process begins with the formation of lung-associated mesenchyme and ends with the mature structure. Lung-associated mesenchyme is the tissue made up of loosely connected mesenchymal cells in the lung."
  * Added definition dbxref GOC:dph to GO:0060484
  * Added definition dbxref GOC:mtg_lung to GO:0060484
  * Added synonym "lung mesenchyme development" to GO:0060484
  * Added general dbxref GOC:dph to synonym lung mesenchyme development of GO:0060484
  * Changed synonym scope of GO:0060484 from "Related" to "Exact"
  * Added synonym "pulmonary mesenchyme development" to GO:0060484
  * Added general dbxref GOC:dph to synonym pulmonary mesenchyme development of GO:0060484
  * Changed synonym scope of GO:0060484 from "Related" to "Exact"
  * Copied GO:0060484 to GO:0030324 with type part_of
  * Copied GO:0060484 to GO:0060485 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060484
* Populated new object GO:0060485 (macro)
  * Changed name of GO:0060485 from "<new term>" to "mesenchyme development"
  * Set definition of GO:0060485 to "The process whose specific outcome is the progression of a mesenchymal tissue over time, from its formation to the mature structure. A mesenchymal tissue is made up of loosely packed stellate cells."
  * Added definition dbxref GOC:dph to GO:0060485
  * Added synonym "mesenchymal development" to GO:0060485
  * Added general dbxref GOC:dph to synonym mesenchymal development of GO:0060485
  * Changed synonym scope of GO:0060485 from "Related" to "Exact"
  * Copied GO:0060485 to GO:0009888 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060485
* Populated new object GO:0060486 (macro)
  * Changed name of GO:0060486 from "<new term>" to "Clara cell differentiation"
  * Set definition of GO:0060486 to "The process whereby a relatively unspecialized cell acquires specialized features of a Clara cell. A Clara cell is an unciliated epithelial cell found in the respiratory and terminal bronchioles."
  * Added definition dbxref GOC:dph to GO:0060486
  * Added definition dbxref GOC:mtg_lung to GO:0060486
  * Copied GO:0060486 to GO:0060487 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060486
* Populated new object GO:0060487 (macro)
  * Changed name of GO:0060487 from "<new term>" to "lung epithelial cell differentiation"
  * Set definition of GO:0060487 to "x."
  * Added definition dbxref GOC:dph to GO:0060487
  * Added synonym "pulmonary epithelial cell differentiation" to GO:0060487
  * Added general dbxref GOC:dph to synonym pulmonary epithelial cell differentiation of GO:0060487
  * Copied GO:0060487 to GO:0030855 with type OBO_REL:is_a
  * Copied GO:0060487 to GO:0060428 with type part_of
  * Copied GO:0060487 to GO:0060479 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060487
* Populated new object GO:0060488 (macro)
  * Changed name of GO:0060488 from "<new term>" to "orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis"
  * Set definition of GO:0060488 to "The process whereby a lung bud bifurcates perpendicular to the plane of the parental branch."
  * Added definition dbxref GOC:dph to GO:0060488
  * Added definition dbxref GOC:mtg_lung to GO:0060488
  * Added synonym "perpendicular dichotomous subdivision of terminal units involved in lung branching morphogenesis" to GO:0060488
  * Added general dbxref GOC:dph to synonym perpendicular dichotomous subdivision of terminal units involved in lung branching morphogenesis of GO:0060488
  * Changed synonym scope of GO:0060488 from "Related" to "Exact"
  * Copied GO:0060488 to GO:0060448 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060488
* Populated new object GO:0060489 (macro)
  * Changed name of GO:0060489 from "<new term>" to "planar dichotomous subdivision of terminal units involved in lung branching morphogenesis"
  * Set definition of GO:0060489 to "The process whereby a lung bud bifurcates parallel to the plane of its parent."
  * Added definition dbxref GOC:dph to GO:0060489
  * Added definition dbxref GOC:mtg_lung to GO:0060489
  * Copied GO:0060489 to GO:0060448 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060489
* Populated new object GO:0060490 (macro)
  * Changed name of GO:0060490 from "<new term>" to "lateral branching involved in lung morphogenesis"
  * Set definition of GO:0060490 to "The process whereby a branch forms along the side of the lung epithelial tube."
  * Added definition dbxref GOC:dph to GO:0060490
  * Added definition dbxref GOC:mtg_lung to GO:0060490
  * Copied GO:0060490 to GO:0060441 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060490
* Changed name of GO:0000161 from "MAPKKK cascade during osmolarity sensing" to "MAPKKK cascade involved in osmosensory signaling pathway"
* Added synonym "MAPKKK cascade during osmolarity sensing" to GO:0000161
* Changed synonym scope of GO:0000161 from "Related" to "Exact"
* Changed name of GO:0000167 from "activation of MAPKKK activity during osmolarity sensing" to "activation of MAPKKK activity involved in osmosensory signaling pathway"
* Added synonym "activation of MAPKKK activity during osmolarity sensing" to GO:0000167
* Changed synonym scope of GO:0000167 from "Related" to "Exact"
* Changed name of GO:0000168 from "activation of MAPKK activity during osmolarity sensing" to "activation of MAPKK activity involved in osmosensory signaling pathway"
* Added synonym "activation of MAPKK activity during osmolarity sensing" to GO:0000168
* Changed synonym scope of GO:0000168 from "Related" to "Exact"
* Changed name of GO:0000169 from "activation of MAPK activity during osmolarity sensing" to "activation of MAPK activity involved in osmosensory signaling pathway"
* Added synonym "activation of MAPK activity during osmolarity sensing" to GO:0000169
* Changed synonym scope of GO:0000169 from "Related" to "Exact"
* Changed name of GO:0000173 from "inactivation of MAPK activity during osmolarity sensing" to "inactivation of MAPK activity involved in osmosensory signaling pathway"
* Added synonym "inactivation of MAPK activity during osmolarity sensing" to GO:0000173
* Changed synonym scope of GO:0000173 from "Related" to "Exact"
* Changed name of GO:0000208 from "nuclear translocation of MAPK during osmolarity sensing" to "nuclear translocation of MAPK involved in osmosensory signaling pathway"
* Added synonym "nuclear translocation of MAPK during osmolarity sensing" to GO:0000208
* Changed synonym scope of GO:0000208 from "Related" to "Exact"
* Changed name of GO:0000720 from "pyrimidine dimer repair via nucleotide-excision repair" to "pyrimidine dimer repair by nucleotide-excision repair"
* Added synonym "endonucleolytic DNA catabolism" to GO:0000737
* Changed synonym scope of GO:0000737 from "Related" to "Exact"
* Added synonym "branching involved in blood vessel morphogenesis" to GO:0001569
* Added general dbxref GOC:dph to synonym branching involved in blood vessel morphogenesis of GO:0001569
* Changed synonym scope of GO:0001569 from "Related" to "Exact"
* Copied GO:0001837 to GO:0051239 with type OBO_REL:is_a
* Copied GO:0002087 to GO:0044065 with type OBO_REL:is_a
* Changed name of GO:0006309 from "DNA fragmentation during apoptosis" to "DNA fragmentation involved in apoptosis"
* Added synonym "endonucleolytic DNA catabolic process involved in apoptosis" to GO:0006309
* Changed synonym scope of GO:0006309 from "Related" to "Exact"
* Deleted GO:0006309 --OBO_REL:is_a--> GO:0006308
* Copied GO:0006309 to GO:0000737 with type OBO_REL:is_a
* Copied GO:0007088 to GO:0051783 with type OBO_REL:is_a
* Added general dbxref Wikipedia: Coagulation to GO:0007596
* Added synonym "behavior via locomotion" to GO:0007626
* Changed synonym scope of GO:0007626 from "Related" to "Exact"
* Copied GO:0010591 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0010849 to GO:0032412 with type OBO_REL:is_a
* Copied GO:0010864 to GO:0045860 with type OBO_REL:is_a
* Copied GO:0010866 to GO:0031326 with type OBO_REL:is_a
* Copied GO:0010867 to GO:0031328 with type OBO_REL:is_a
* Copied GO:0010868 to GO:0031324 with type OBO_REL:is_a
* Copied GO:0010880 to GO:0032386 with type OBO_REL:is_a
* Copied GO:0010888 to GO:0048519 with type OBO_REL:is_a
* Copied GO:0010893 to GO:0046889 with type OBO_REL:is_a
* Copied GO:0010894 to GO:0051055 with type OBO_REL:is_a
* Copied GO:0010899 to GO:0031329 with type OBO_REL:is_a
* Copied GO:0010900 to GO:0031330 with type OBO_REL:is_a
* Copied GO:0010904 to GO:0019219 with type OBO_REL:is_a
* Copied GO:0010905 to GO:0045934 with type OBO_REL:is_a
* Copied GO:0010905 to GO:0010677 with type OBO_REL:is_a
* Copied GO:0010908 to GO:0032268 with type OBO_REL:is_a
* Copied GO:0010908 to GO:0031326 with type OBO_REL:is_a
* Copied GO:0010908 to GO:0043255 with type OBO_REL:is_a
* Copied GO:0010909 to GO:0031328 with type OBO_REL:is_a
* Copied GO:0010909 to GO:0032270 with type OBO_REL:is_a
* Copied GO:0010912 to GO:0043085 with type OBO_REL:is_a
* Copied GO:0010913 to GO:0048583 with type OBO_REL:is_a
* Copied GO:0010941 to GO:0050793 with type OBO_REL:is_a
* Copied GO:0010942 to GO:0051094 with type OBO_REL:is_a
* Deleted GO:0016358 --part_of--> GO:0031175
* Copied GO:0016358 to GO:0031175 with type OBO_REL:is_a
* Added general dbxref GOC:mah to synonym spinal cord dorsal-ventral patterning of GO:0021513
* Added general dbxref GOC:mah to synonym forebrain dorsal-ventral pattern formation of GO:0021798
* Copied GO:0021822 to GO:0051960 with type OBO_REL:is_a
* Copied GO:0021914 to GO:0051960 with type part_of
* Deleted GO:0030030 --OBO_REL:is_a--> GO:0000902
* Copied GO:0030030 to GO:0016043 with type OBO_REL:is_a
* Copied GO:0030092 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0030855 to GO:0060429 with type part_of
* Changed name of GO:0031128 from "induction" to "developmental induction"
* Changed name of GO:0031175 from "neurite development" to "neuron projection development"
* Added synonym "neurite development" to GO:0031175
* Added general dbxref GOC:dph to synonym neurite development of GO:0031175
* Changed synonym scope of GO:0031175 from "Related" to "Exact"
* Changed name of GO:0031987 from "locomotion during locomotory behavior" to "locomotion involved in locomotory behavior"
* Copied GO:0032884 to GO:0044087 with type OBO_REL:is_a
* Added general dbxref Wikipedia: Secretion to GO:0032940
* Deleted GO:0035318 --OBO_REL:is_a--> GO:0030030
* Copied GO:0035318 to GO:0048858 with type OBO_REL:is_a
* Deleted GO:0035319 --OBO_REL:is_a--> GO:0030030
* Copied GO:0035319 to GO:0048858 with type OBO_REL:is_a
* Copied GO:0043254 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0044030 to GO:0051052 with type OBO_REL:is_a
* Copied GO:0044062 to GO:0051046 with type OBO_REL:is_a
* Copied GO:0044090 to GO:0044089 with type OBO_REL:is_a
* Added general dbxref Wikipedia: Depurination to GO:0045007
* Added general dbxref Wikipedia: Transcytosis to GO:0045056
* Added general dbxref Wikipedia: Thymocyte to GO:0045058
* Added general dbxref Wikipedia: Innate_immune_system to GO:0045087
* Added general dbxref Wikipedia: Leukocyte_extravasation to GO:0045123
* Added general dbxref Wikipedia: Immunoglobulin_class_switching to GO:0045190
* Added general dbxref Wikipedia: Immunologic_activation to GO:0045321
* Added general dbxref Wikipedia: Cellular_respiration to GO:0045333
* Added general dbxref Wikipedia: Bone_resorption to GO:0045453
* Added general dbxref Wikipedia: Basophil_activation to GO:0045575
* Added general dbxref Wikipedia: Respiratory_burst to GO:0045730
* Copied GO:0045839 to GO:0051784 with type OBO_REL:is_a
* Copied GO:0045840 to GO:0051785 with type OBO_REL:is_a
* Added general dbxref Wikipedia: Glucose_uptake to GO:0046323
* Added general dbxref Wikipedia: Eicosanoid to GO:0046456
* Added general dbxref Wikipedia: Prostanoid#Biosynthesis to GO:0046457
* Added general dbxref Wikipedia: Ether_lipid to GO:0046485
* Added general dbxref Wikipedia: Salivation to GO:0046541
* Added general dbxref Wikipedia: Folic_acid to GO:0046656
* Added general dbxref Wikipedia: Sperm_competition to GO:0046692
* Added general dbxref Wikipedia: Decidualization to GO:0046697
* Added general dbxref Wikipedia: Bone_remodeling to GO:0046849
* Added general dbxref Wikipedia: Habituation to GO:0046959
* Added general dbxref Wikipedia: Sensitization to GO:0046960
* Deleted general dbxref GOC:kad from synonym histidine:pyruvate aminotransferase activity of GO:0047312
* Added general dbxref EC:2.6.1.58 to synonym histidine:pyruvate aminotransferase activity of GO:0047312
* Added general dbxref Wikipedia: Eye_color to GO:0048069
* Added general dbxref Wikipedia: Hyperphosphorylation to GO:0048151
* Added general dbxref Wikipedia: Oogenesis to GO:0048477
* Added general dbxref Wikipedia: Organogenesis to GO:0048513
* Copied GO:0048762 to GO:0060485 with type part_of
* Changed name of GO:0048812 from "neurite morphogenesis" to "neuron projection morphogenesis"
* Added synonym "neurite morphogenesis" to GO:0048812
* Added general dbxref GOC:tb to synonym neurite morphogenesis of GO:0048812
* Added general dbxref GOC:dph to synonym neurite morphogenesis of GO:0048812
* Added general dbxref Wikipedia: Stem_cell_differentiation to GO:0048863
* Added general dbxref Wikipedia: Cognition to GO:0050890
* Added general dbxref Wikipedia: Transduction_(physiology) to GO:0050906
* Added general dbxref Wikipedia: Taste to GO:0050909
* Added general dbxref Wikipedia: Thermoception to GO:0050955
* Added general dbxref Wikipedia: Electroreception to GO:0050956
* Added general dbxref Wikipedia: Equilibrioception to GO:0050957
* Added general dbxref Wikipedia: Magnetoception to GO:0050958
* Added general dbxref Wikipedia: Echolocation to GO:0050959
* Added general dbxref Wikipedia: Touch to GO:0050975
* Added general dbxref Wikipedia: Nuclear_transport to GO:0051169
* Added general dbxref Wikipedia: Chondrogenesis to GO:0051216
* Added general dbxref Wikipedia: Cell_division to GO:0051301
* Added general dbxref Wikipedia: G1_phase to GO:0051318
* Added general dbxref Wikipedia: G2_phase to GO:0051319
* Added general dbxref Wikipedia: S_phase to GO:0051320
* Added general dbxref Wikipedia: Anaphase to GO:0051322
* Added general dbxref Wikipedia: Metaphase to GO:0051323
* Added general dbxref Wikipedia: Prophase to GO:0051324
* Added general dbxref Wikipedia: Interphase to GO:0051325
* Added general dbxref Wikipedia: Telophase to GO:0051326
* Added general dbxref Wikipedia: Microgametogenesis to GO:0055046
* Added general dbxref Wikipedia: Redox to GO:0055114
* Added general dbxref Wikipedia: Diapause to GO:0055115
* Added general dbxref Wikipedia: Reflex to GO:0060004
* Added general dbxref Wikipedia: Convergent_extension to GO:0060026
* Added general dbxref Wikipedia: Urination to GO:0060073
* Added general dbxref Wikipedia: Prepulse_inhibition to GO:0060134
* Added general dbxref Wikipedia: Limb_development to GO:0060173
* Added general dbxref Wikipedia: Estrous_cycle to GO:0060209
* Added general dbxref Wikipedia: Contact_inhibition to GO:0060242
* Added general dbxref Wikipedia: Transdifferentiation to GO:0060290
* Deleted GO:0060441 --OBO_REL:is_a--> GO:0001763
* Copied GO:0060441 to GO:0048754 with type OBO_REL:is_a
* Added general dbxref Wikipedia: Glycosylation to GO:0070085

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