[Go-diff] GO update 04/08/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Wed Apr 8 21:30:53 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.526 by 1.530

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070558
* Created object of type obo:TERM with id GO:0070559
* Created object of type obo:TERM with id GO:0080049
* Created object of type obo:TERM with id GO:0080050
* Created object of type obo:TERM with id GO:0080051
* Created object of type obo:TERM with id GO:0080052
* Created object of type obo:TERM with id GO:0080053
* Created object of type obo:TERM with id GO:0080054
* Created object of type obo:TERM with id GO:0080055
* Populated new object GO:0070558 (macro)
  * Changed name of GO:0070558 from "<new term>" to "alphaM-beta2 integrin-CD63 complex"
  * Set definition of GO:0070558 to "A protein complex that consists of an alphaM-beta2 integrin complex bound to membrane protein CD63, a member of the tetraspan family."
  * Added definition dbxref PMID:8871662 to GO:0070558
  * Added synonym "ITGAM-ITGB2-CD63 complex" to GO:0070558
  * Added general dbxref CORUM:2153 to synonym ITGAM-ITGB2-CD63 complex of GO:0070558
  * Changed synonym scope of GO:0070558 from "Related" to "Narrow"
  * Copied GO:0070558 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0070558 to GO:0044459 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070558
* Populated new object GO:0070559 (macro)
  * Changed name of GO:0070559 from "<new term>" to "lysosomal multienzyme complex"
  * Set definition of GO:0070559 to "A protein complex found in the lysosome that contains beta-galactosidase, cathepsin A, alpha-neuraminidase and N-acetylgalactosamine-6-sulfate sulfatase, and is involved in glycosaminoglycan catabolism."
  * Added definition dbxref GOC:mah to GO:0070559
  * Added definition dbxref PMID:8910459 to GO:0070559
  * Added synonym "GALNS-lysosomal hydrolase 1.27 MDa complex" to GO:0070559
  * Added general dbxref CORUM:1379 to synonym GALNS-lysosomal hydrolase 1.27 MDa complex of GO:0070559
  * Changed synonym scope of GO:0070559 from "Related" to "Narrow"
  * Copied GO:0070559 to GO:0005764 with type part_of
  * Copied GO:0070559 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070559
* Populated new object GO:0080049 (macro)
  * Changed name of GO:0080049 from "<new term>" to "L-gulono-1,4-lactone dehydrogenase activity"
  * Set definition of GO:0080049 to "Catalysis of the reaction: L-gulono-1,4-lactone + 2 ferricytochrome c = L-ascorbate + 2 ferrocytochrome c."
  * Added definition dbxref PMID:18190525 to GO:0080049
  * Copied GO:0080049 to GO:0016632 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0080049
* Populated new object GO:0080050 (macro)
  * Changed name of GO:0080050 from "<new term>" to "regulation of seed development"
  * Set definition of GO:0080050 to "Any process that modulates the frequency, rate or extent of seed development."
  * Added definition dbxref PMID:19141706 to GO:0080050
  * Copied GO:0080050 to GO:0048580 with type OBO_REL:is_a
  * Copied GO:0080050 to GO:0048316 with type regulates
  * Assigned namespace "biological_process" to GO:0080050
* Populated new object GO:0080051 (macro)
  * Changed name of GO:0080051 from "<new term>" to "cutin transport"
  * Set definition of GO:0080051 to "The directed movement of cutin into, out of, within or between cells. Cutin, which consisits of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface."
  * Added definition dbxref PMID:17951461 to GO:0080051
  * Copied GO:0080051 to GO:0015909 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080051
* Populated new object GO:0080052 (macro)
  * Changed name of GO:0080052 from "<new term>" to "response to histidine"
  * Set definition of GO:0080052 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus."
  * Added definition dbxref PMID:15889294 to GO:0080052
  * Copied GO:0080052 to GO:0043200 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080052
* Populated new object GO:0080053 (macro)
  * Changed name of GO:0080053 from "<new term>" to "response to phenylalanine"
  * Set definition of GO:0080053 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus."
  * Added definition dbxref PMID:15889294 to GO:0080053
  * Copied GO:0080053 to GO:0043200 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080053
* Populated new object GO:0080054 (macro)
  * Changed name of GO:0080054 from "<new term>" to "low affinity nitrate transmembrane transporter activity"
  * Set definition of GO:0080054 to "Catalysis of the transfer of nitrate ions (NO3-) from one side of a membrane to the other. In low affinity transport the transporter is able to bind the solute only if it is present at very high concentrations."
  * Added definition dbxref PMID:19050168 to GO:0080054
  * Copied GO:0080054 to GO:0015112 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0080054
* Populated new object GO:0080055 (macro)
  * Changed name of GO:0080055 from "<new term>" to "low affinity nitrate transport"
  * Set definition of GO:0080055 to "The directed movement of nitrate into, out of, within or between cells. In low affinity transport the transporter is able to bind the solute only if it is present at very high concentrations."
  * Added definition dbxref PMID:19050168 to GO:0080055
  * Copied GO:0080055 to GO:0015706 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0080055
* Added synonym "PBAF complex" to GO:0016514
* Added general dbxref CORUM:565 to synonym PBAF complex of GO:0016514
* Changed synonym scope of GO:0016514 from "Related" to "Narrow"
* Added synonym "Polybromo- and BAF containing complex" to GO:0016514
* Added general dbxref CORUM:565 to synonym Polybromo- and BAF containing complex of GO:0016514
* Changed synonym scope of GO:0016514 from "Related" to "Narrow"
* Added synonym "SWI/SNF complex B" to GO:0016514
* Added general dbxref CORUM:565 to synonym SWI/SNF complex B of GO:0016514
* Changed synonym scope of GO:0016514 from "Related" to "Narrow"
* Added general dbxref GOC:mah to synonym spinal cord dorsal-ventral patterning of GO:0021513
* Added general dbxref GOC:mah to synonym forebrain dorsal-ventral pattern formation of GO:0021798
* Deleted GO:0030997 --OBO_REL:is_a--> GO:0032886
* Copied GO:0031383 to GO:0022604 with type OBO_REL:is_a
* Deleted GO:0031445 --OBO_REL:is_a--> GO:0001672
* Copied GO:0031445 to GO:0010847 with type OBO_REL:is_a
* Copied GO:0032231 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0032534 to GO:0060491 with type OBO_REL:is_a
* Copied GO:0032872 to GO:0070302 with type OBO_REL:is_a
* Copied GO:0032873 to GO:0070303 with type OBO_REL:is_a
* Copied GO:0032874 to GO:0048584 with type OBO_REL:is_a
* Copied GO:0032875 to GO:0010564 with type OBO_REL:is_a
* Deleted GO:0032887 --OBO_REL:is_a--> GO:0032886
* Copied GO:0032887 to GO:0070507 with type OBO_REL:is_a
* Copied GO:0032932 to GO:0010564 with type OBO_REL:is_a
* Copied GO:0032956 to GO:0051493 with type OBO_REL:is_a
* Copied GO:0032960 to GO:0010919 with type OBO_REL:is_a
* Copied GO:0032961 to GO:0010920 with type OBO_REL:is_a
* Copied GO:0033599 to GO:0050793 with type OBO_REL:is_a
* Copied GO:0033599 to GO:0051239 with type OBO_REL:is_a
* Copied GO:0035155 to GO:0051239 with type OBO_REL:is_a
* Copied GO:0035157 to GO:0051239 with type OBO_REL:is_a
* Deleted GO:0042244 --OBO_REL:is_a--> GO:0010927
* Copied GO:0042244 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0042268 to GO:0010941 with type OBO_REL:is_a
* Copied GO:0043941 to GO:0043938 with type OBO_REL:is_a
* Copied GO:0043945 to GO:0043938 with type OBO_REL:is_a
* Copied GO:0045898 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0045919 to GO:0010942 with type OBO_REL:is_a
* Copied GO:0046328 to GO:0070302 with type OBO_REL:is_a
* Copied GO:0046329 to GO:0070303 with type OBO_REL:is_a
* Copied GO:0046330 to GO:0048584 with type OBO_REL:is_a
* Deleted GO:0046605 --OBO_REL:is_a--> GO:0032886
* Copied GO:0046605 to GO:0070507 with type OBO_REL:is_a
* Copied GO:0046626 to GO:0048583 with type OBO_REL:is_a
* Copied GO:0046627 to GO:0048585 with type OBO_REL:is_a
* Deleted general dbxref GOC:kad from synonym histidine:pyruvate aminotransferase activity of GO:0047312
* Added general dbxref EC:2.6.1.58 to synonym histidine:pyruvate aminotransferase activity of GO:0047312
* Copied GO:0048584 to GO:0046628 with type OBO_REL:is_a
* Copied GO:0051893 to GO:0051128 with type OBO_REL:is_a
* Copied GO:0051893 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0051894 to GO:0051130 with type OBO_REL:is_a
* Copied GO:0051895 to GO:0051129 with type OBO_REL:is_a
* Copied GO:0051963 to GO:0044087 with type OBO_REL:is_a
* Removed GO:0051972 from category gosubset_prok
* Removed GO:0051974 from category gosubset_prok
* Deleted GO:0051988 --OBO_REL:is_a--> GO:0032886
* Copied GO:0051988 to GO:0070507 with type OBO_REL:is_a
* Copied GO:0055021 to GO:0060420 with type OBO_REL:is_a
* Copied GO:0060058 to GO:0022603 with type OBO_REL:is_a
* Deleted GO:0060236 --OBO_REL:is_a--> GO:0032886
* Copied GO:0060236 to GO:0070507 with type OBO_REL:is_a
* Copied GO:0060260 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0060297 to GO:0022603 with type OBO_REL:is_a
* Copied GO:0060297 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0060398 to GO:0048583 with type OBO_REL:is_a
* Copied GO:0060399 to GO:0048584 with type OBO_REL:is_a
* Copied GO:0060400 to GO:0048585 with type OBO_REL:is_a
* Copied GO:0060408 to GO:0050804 with type OBO_REL:is_a
* Copied GO:0060420 to GO:0051239 with type OBO_REL:is_a

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