[Go-diff] GO update 04/10/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Apr 10 21:30:53 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.531 by 1.535

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060532
* Created object of type obo:TERM with id GO:0060533
* Created object of type obo:TERM with id GO:0060534
* Created object of type obo:TERM with id GO:0060535
* Created object of type obo:TERM with id GO:0060536
* Created object of type obo:TERM with id GO:0060537
* Created object of type obo:TERM with id GO:0060538
* Created object of type obo:TERM with id GO:0060539
* Created object of type obo:TERM with id GO:0060540
* Created object of type obo:TERM with id GO:0060541
* Populated new object GO:0060532 (macro)
  * Changed name of GO:0060532 from "<new term>" to "bronchus cartilage development"
  * Set definition of GO:0060532 to "The process whose specific outcome is the progression of lung cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate."
  * Added definition dbxref GOC:dph to GO:0060532
  * Added definition dbxref GOC:mtg_lung to GO:0060532
  * Added synonym "pulmonary cartilage development" to GO:0060532
  * Changed synonym scope of GO:0060532 from "Related" to "Exact"
  * Copied GO:0060532 to GO:0060433 with type part_of
  * Copied GO:0060532 to GO:0051216 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060532
* Populated new object GO:0060533 (macro)
  * Changed name of GO:0060533 from "<new term>" to "bronchus cartilage morphogenesis"
  * Set definition of GO:0060533 to "The process by which the bronchus cartilage is generated and organized. The bronchus cartilage is the connective tissue of the portion of the airway that connects to the lungs."
  * Added definition dbxref GOC:dph to GO:0060533
  * Copied GO:0060533 to GO:0060532 with type part_of
  * Copied GO:0060533 to GO:0060434 with type part_of
  * Copied GO:0060533 to GO:0060536 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060533
* Populated new object GO:0060534 (macro)
  * Changed name of GO:0060534 from "<new term>" to "trachea cartilage development"
  * Set definition of GO:0060534 to "The process whose specific outcome is the progression of the tracheal cartilage over time, from its formation to the mature structure. Cartilage is a connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate."
  * Added definition dbxref GOC:dph to GO:0060534
  * Copied GO:0060534 to GO:0051216 with type OBO_REL:is_a
  * Copied GO:0060534 to GO:0060438 with type part_of
  * Assigned namespace "biological_process" to GO:0060534
* Populated new object GO:0060535 (macro)
  * Changed name of GO:0060535 from "<new term>" to "trachea cartilage morphogenesis"
  * Set definition of GO:0060535 to "The process by which the anatomical structures of cartilage in the trachea are generated and organized."
  * Added definition dbxref GOC:dph to GO:0060535
  * Copied GO:0060535 to GO:0060439 with type part_of
  * Copied GO:0060535 to GO:0060536 with type OBO_REL:is_a
  * Copied GO:0060535 to GO:0060534 with type part_of
  * Assigned namespace "biological_process" to GO:0060535
* Populated new object GO:0060536 (macro)
  * Changed name of GO:0060536 from "<new term>" to "cartilage morphogenesis"
  * Set definition of GO:0060536 to "The process by which the anatomical structures of cartilage are generated and organized."
  * Added definition dbxref GOC:dph to GO:0060536
  * Copied GO:0060536 to GO:0048729 with type OBO_REL:is_a
  * Copied GO:0060536 to GO:0051216 with type part_of
  * Assigned namespace "biological_process" to GO:0060536
* Populated new object GO:0060537 (macro)
  * Changed name of GO:0060537 from "<new term>" to "muscle tissue development"
  * Set definition of GO:0060537 to "The progression of muscle tissue over time, from its initial formation to its mature state. Muscle tissue is a contractile tissue made up of actin and myosin fibers."
  * Added definition dbxref GOC:dph to GO:0060537
  * Copied GO:0060537 to GO:0007517 with type part_of
  * Copied GO:0060537 to GO:0009888 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060537
* Populated new object GO:0060538 (macro)
  * Changed name of GO:0060538 from "<new term>" to "skeletal muscle organ development"
  * Set definition of GO:0060538 to "The progression of a skeletal muscle organ over time from its initial formation to its mature state. A skeletal muscle organ includes the skeletal muscle tissue and its associated connective tissue."
  * Added definition dbxref GOC:dph to GO:0060538
  * Copied GO:0060538 to GO:0007517 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060538
* Populated new object GO:0060539 (macro)
  * Changed name of GO:0060539 from "<new term>" to "diaphragm development"
  * Set definition of GO:0060539 to "The progression of the diaphragm over time from its initial formation to the mature structure. The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs."
  * Added definition dbxref GOC:dph to GO:0060539
  * Copied GO:0060539 to GO:0060538 with type OBO_REL:is_a
  * Copied GO:0060539 to GO:0060541 with type part_of
  * Assigned namespace "biological_process" to GO:0060539
* Populated new object GO:0060540 (macro)
  * Changed name of GO:0060540 from "<new term>" to "diaphragm morphogensis"
  * Set definition of GO:0060540 to "The process by which the anatomical structures of the diaphragm are generated and organized. Morphogenesis pertains to the creation of form."
  * Added definition dbxref GOC:dph to GO:0060540
  * Copied GO:0060540 to GO:0060539 with type part_of
  * Copied GO:0060540 to GO:0048644 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060540
* Populated new object GO:0060541 (macro)
  * Changed name of GO:0060541 from "<new term>" to "respiratory system development"
  * Set definition of GO:0060541 to "The progression of the respiratory system over time from its formation to its mature structure. The respiratory system carries out respiratory gaseous exchange."
  * Added definition dbxref GOC:dph to GO:0060541
  * Copied GO:0060541 to GO:0048731 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060541
* Deleted GO:0001889 --OBO_REL:is_a--> GO:0009887
* Deleted GO:0007424 --OBO_REL:is_a--> GO:0048731
* Copied GO:0007424 to GO:0060541 with type OBO_REL:is_a
* Changed name of GO:0007517 from "muscle development" to "muscle organ development"
* Changed name of GO:0007519 from "skeletal muscle development" to "skeletal muscle tissue development"
* Copied GO:0007519 to GO:0060538 with type part_of
* Changed name of GO:0014706 from "striated muscle development" to "striated muscle tissue development"
* Added definition dbxref GOC:dph to GO:0014706
* Deleted GO:0014706 --OBO_REL:is_a--> GO:0007517
* Copied GO:0014706 to GO:0060537 with type OBO_REL:is_a
* Deleted GO:0016203 --part_of--> GO:0007519
* Copied GO:0016203 to GO:0060538 with type part_of
* Added general dbxref GOC:mah to synonym spinal cord dorsal-ventral patterning of GO:0021513
* Added general dbxref GOC:mah to synonym forebrain dorsal-ventral pattern formation of GO:0021798
* Deleted GO:0030317 --OBO_REL:is_a--> GO:0006928
* Copied GO:0030317 to GO:0048870 with type OBO_REL:is_a
* Copied GO:0030324 to GO:0060541 with type part_of
* Copied GO:0032874 to GO:0070304 with type OBO_REL:is_a
* Copied GO:0043584 to GO:0060541 with type part_of
* Copied GO:0043941 to GO:0045881 with type OBO_REL:is_a
* Copied GO:0043945 to GO:0045881 with type OBO_REL:is_a
* Copied GO:0046330 to GO:0070304 with type OBO_REL:is_a
* Copied GO:0046628 to GO:0048584 with type OBO_REL:is_a
* Deleted general dbxref GOC:kad from synonym histidine:pyruvate aminotransferase activity of GO:0047312
* Added general dbxref EC:2.6.1.58 to synonym histidine:pyruvate aminotransferase activity of GO:0047312
* Deleted GO:0048584 --OBO_REL:is_a--> GO:0046628
* Changed name of GO:0048630 from "skeletal muscle growth" to "skeletal muscle tissue growth"
* Changed name of GO:0048641 from "regulation of skeletal muscle development" to "regulation of skeletal muscle tissue development"
* Changed definition of GO:0048641 from "Any process that modulates the frequency, rate or extent of skeletal muscle development." to "Any process that modulates the frequency, rate or extent of skeletal muscle tissue development."
* Changed name of GO:0048642 from "negative regulation of skeletal muscle development" to "negative regulation of skeletal muscle tissue development"
* Changed definition of GO:0048642 from "Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle development." to "Any process that stops, prevents or reduces the frequency, rate or extent of skeletal muscle tissue development."
* Changed name of GO:0048643 from "positive regulation of skeletal muscle development" to "positive regulation of skeletal muscle tissue development"
* Changed definition of GO:0048643 from "Any process that activates, maintains or increases the rate of skeletal muscle development." to "Any process that activates, maintains or increases the rate of skeletal muscle tissue development."
* Changed name of GO:0048644 from "muscle morphogenesis" to "muscle organ morphogenesis"
* Copied GO:0048729 to GO:0009887 with type part_of
* Changed name of GO:0048738 from "cardiac muscle development" to "cardiac muscle tissue development"
* Changed name of GO:0048745 from "smooth muscle development" to "smooth muscle tissue development"
* Deleted GO:0048745 --OBO_REL:is_a--> GO:0007517
* Copied GO:0048745 to GO:0060537 with type OBO_REL:is_a
* Copied GO:0052330 to GO:0043903 with type OBO_REL:is_a
* Changed name of GO:0055017 from "cardiac muscle growth" to "cardiac muscle tissue growth"
* Changed name of GO:0055024 from "regulation of cardiac muscle development" to "regulation of cardiac muscle tissue development"
* Changed definition of GO:0055024 from "Any process that modulates the frequency, rate or extent of cardiac muscle development." to "Any process that modulates the frequency, rate or extent of cardiac muscle tissue development."
* Changed name of GO:0055025 from "positive regulation of cardiac muscle development" to "positive regulation of cardiac muscle tissue development"
* Changed definition of GO:0055025 from "Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle development." to "Any process that activates, maintains or increases the frequency, rate or extent of cardiac muscle tissue development."
* Changed name of GO:0055026 from "negative regulation of cardiac muscle development" to "negative regulation of cardiac muscle tissue development"
* Changed definition of GO:0055026 from "Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle development." to "Any process that stops, prevents or reduces the frequency, rate or extent of cardiac muscle tissue development."
* Copied GO:0060433 to GO:0060541 with type part_of
* Copied GO:0060438 to GO:0060541 with type part_of
* Copied GO:0060453 to GO:0051046 with type OBO_REL:is_a
* Copied GO:0060454 to GO:0051047 with type OBO_REL:is_a
* Copied GO:0060455 to GO:0051048 with type OBO_REL:is_a
* Copied GO:0060456 to GO:0051240 with type OBO_REL:is_a
* Copied GO:0060457 to GO:0051241 with type OBO_REL:is_a
* Copied GO:0060472 to GO:0050865 with type OBO_REL:is_a
* Copied GO:0060474 to GO:0051272 with type OBO_REL:is_a
* Deleted GO:0060482 --part_of--> GO:0030324
* Deleted GO:0060482 --OBO_REL:is_a--> GO:0048856
* Copied GO:0060482 to GO:0060433 with type OBO_REL:is_a
* Changed name of GO:0060501 from "positive reguation of epithelial cell proliferation involved in lung morhogenesis" to "positive regulation of epithelial cell proliferation involved in lung morphogenesis"
* Changed definition of GO:0060501 from "Any process that increases the rate or frquency of epithelial cell proliferation that results in the lung attaining its shape." to "Any process that increases the rate or frequency of epithelial cell proliferation that results in the lung attaining its shape."
* Copied GO:0060501 to GO:0051239 with type OBO_REL:is_a
* Copied GO:0060501 to GO:0022603 with type OBO_REL:is_a
* Changed definition of GO:0060504 from "Any process that increases the rate or frquency of epithelial cell proliferation that results in the lung bud increasing in size radially." to "Any process that increases the rate or frequency of epithelial cell proliferation that results in the lung bud increasing in size radially."
* Copied GO:0060504 to GO:0048638 with type OBO_REL:is_a
* Copied GO:0070235 to GO:0002682 with type OBO_REL:is_a
* Copied GO:0070235 to GO:0032844 with type OBO_REL:is_a
* Copied GO:0070239 to GO:0032844 with type OBO_REL:is_a
* Copied GO:0070239 to GO:0002682 with type OBO_REL:is_a
* Copied GO:0070247 to GO:0070228 with type OBO_REL:is_a
* Copied GO:0070248 to GO:0070229 with type OBO_REL:is_a
* Copied GO:0070249 to GO:0070230 with type OBO_REL:is_a
* Copied GO:0070256 to GO:0051241 with type OBO_REL:is_a
* Copied GO:0070256 to GO:0051048 with type OBO_REL:is_a
* Copied GO:0070257 to GO:0051047 with type OBO_REL:is_a
* Copied GO:0070257 to GO:0070255 with type OBO_REL:is_a
* Copied GO:0070257 to GO:0051240 with type OBO_REL:is_a
* Copied GO:0070302 to GO:0048583 with type OBO_REL:is_a
* Copied GO:0070303 to GO:0048585 with type OBO_REL:is_a
* Copied GO:0070304 to GO:0048584 with type OBO_REL:is_a
* Copied GO:0070316 to GO:0010564 with type OBO_REL:is_a
* Copied GO:0070366 to GO:0051239 with type OBO_REL:is_a
* Copied GO:0070367 to GO:0051241 with type OBO_REL:is_a
* Copied GO:0070368 to GO:0051240 with type OBO_REL:is_a
* Copied GO:0070453 to GO:0031326 with type OBO_REL:is_a
* Copied GO:0070454 to GO:0031327 with type OBO_REL:is_a
* Copied GO:0070455 to GO:0031328 with type OBO_REL:is_a
* Copied GO:0075223 to GO:0075310 with type OBO_REL:is_a
* Copied GO:0075224 to GO:0075311 with type OBO_REL:is_a
* Copied GO:0075225 to GO:0075312 with type OBO_REL:is_a

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