[Go-diff] GO update 04/21/2009

Tue Apr 21 21:30:54 PDT 2009

OBODIFF of gene_ontology_write.obo version 1.551 by 1.553

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0044092
* Created object of type obo:TERM with id GO:0044093
* Created object of type obo:TERM with id GO:0070576
* Created object of type obo:TERM with id GO:0070577
* Populated new object GO:0044092 (macro)
  * Changed name of GO:0044092 from "<new term>" to "negative regulation of molecular function"
  * Set definition of GO:0044092 to "Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding."
  * Added definition dbxref GO:jl to GO:0044092
  * Copied GO:0044092 to GO:0065009 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0044092
* Populated new object GO:0044093 (macro)
  * Changed name of GO:0044093 from "<new term>" to "positive regulation of molecular function"
  * Set definition of GO:0044093 to "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding."
  * Added definition dbxref GO:jl to GO:0044093
  * Copied GO:0044093 to GO:0065009 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0044093
* Populated new object GO:0070576 (macro)
  * Changed name of GO:0070576 from "<new term>" to "vitamin D 24-hydroxylase activity"
  * Set definition of GO:0070576 to "Catalysis of the hydroxylation of C-24 of any form of vitamin D."
  * Added definition dbxref GOC:mah to GO:0070576
  * Added definition dbxref PMID:15546903 to GO:0070576
  * Added synonym "calciferol 24-hydroxylase activity" to GO:0070576
  * Added general dbxref GOC:rl to synonym calciferol 24-hydroxylase activity of GO:0070576
  * Changed synonym scope of GO:0070576 from "Related" to "Narrow"
  * Added synonym "cholecalciferol 24-hydroxylase activity" to GO:0070576
  * Added general dbxref GOC:rl to synonym cholecalciferol 24-hydroxylase activity of GO:0070576
  * Changed synonym scope of GO:0070576 from "Related" to "Narrow"
  * Added synonym "ergocalciferol 24-hydroxylase activity" to GO:0070576
  * Added general dbxref GOC:rl to synonym ergocalciferol 24-hydroxylase activity of GO:0070576
  * Changed synonym scope of GO:0070576 from "Related" to "Narrow"
  * Added synonym "vitamin D2 24-hydroxylase activity" to GO:0070576
  * Added general dbxref GOC:rl to synonym vitamin D2 24-hydroxylase activity of GO:0070576
  * Changed synonym scope of GO:0070576 from "Related" to "Narrow"
  * Added synonym "vitamin D3 24-hydroxylase activity" to GO:0070576
  * Added general dbxref GOC:rl to synonym vitamin D3 24-hydroxylase activity of GO:0070576
  * Changed synonym scope of GO:0070576 from "Related" to "Narrow"
  * Copied GO:0070576 to GO:0016491 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070576
* Populated new object GO:0070577 (macro)
  * Changed name of GO:0070577 from "<new term>" to "histone acetyl-lysine binding"
  * Set definition of GO:0070577 to "Interacting selectively with an acetylated lysine residue within a histone."
  * Added definition dbxref GOC:mah to GO:0070577
  * Added definition dbxref GOC:rl to GO:0070577
  * Added definition dbxref PMID:17582821 to GO:0070577
  * Added synonym "acetylated histone residue binding" to GO:0070577
  * Added general dbxref GOC:rl to synonym acetylated histone residue binding of GO:0070577
  * Changed synonym scope of GO:0070577 from "Related" to "Broad"
  * Copied GO:0070577 to GO:0042393 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070577
* Changed definition of GO:0008403 from "Catalysis of the hydroxylation of C-24 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 24(R),25-dihydroxycalciferol." to "Catalysis of the hydroxylation of C-24 of 25-hydroxycholecalciferol (25-hydroxyvitamin D3) to form 24(R),25-dihydroxycholecalciferol."
* Changed name of GO:0030342 from "1-alpha,25-dihydroxyvitamin D3 (1,25-(OH)2D3) 24-hydroxylase activity" to "1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity"
* Changed definition of GO:0030342 from "Catalysis of the hydroxylation of C-1 of 25-hydroxycalciferol (25-hydroxyvitamin D3) to form 1-alpha,25-dihydroxycalciferol." to "Catalysis of the hydroxylation of C-24 of 1-alpha,25-hydroxycholecalciferol (25-hydroxyvitamin D3; calcitriol)."
* Deleted definition dbxref Biochemical Pathways (ISBN:0471331309) from GO:0030342
* Added definition dbxref PMID:8506296 to GO:0030342
* Added synonym "1,25-(OH)2D3 24-hydroxylase activity" to GO:0030342
* Added general dbxref PMID:8506296 to synonym 1,25-(OH)2D3 24-hydroxylase activity of GO:0030342
* Changed synonym scope of GO:0030342 from "Related" to "Exact"
* Added synonym "calcitriol 24-hydroxylase activity" to GO:0030342
* Added general dbxref GOC:mah to synonym calcitriol 24-hydroxylase activity of GO:0030342
* Added general dbxref ChEBI:17823 to synonym calcitriol 24-hydroxylase activity of GO:0030342
* Changed synonym scope of GO:0030342 from "Related" to "Exact"
* Changed definition of GO:0030343 from "Catalysis of the hydroxylation of C-25 of calciferol (vitamin D3) to form 25-hydroxycalciferol." to "Catalysis of the hydroxylation of C-25 of cholecalciferol (vitamin D3) to form 25-hydroxycholecalciferol."
* Deleted GO:0030581 --OBO_REL:is_a--> GO:0006886
* Copied GO:0032410 to GO:0044092 with type OBO_REL:is_a
* Copied GO:0032411 to GO:0044093 with type OBO_REL:is_a
* Copied GO:0043085 to GO:0044093 with type OBO_REL:is_a
* Copied GO:0043086 to GO:0044092 with type OBO_REL:is_a
* Copied GO:0043921 to GO:0046782 with type OBO_REL:is_a
* Deleted GO:0043922 --OBO_REL:is_a--> GO:0016481
* Copied GO:0043922 to GO:0032897 with type OBO_REL:is_a
* Deleted GO:0043923 --OBO_REL:is_a--> GO:0045941
* Copied GO:0043923 to GO:0050434 with type OBO_REL:is_a
* Copied GO:0045857 to GO:0044092 with type OBO_REL:is_a
* Copied GO:0045858 to GO:0044093 with type OBO_REL:is_a
* Copied GO:0046775 to GO:0052553 with type OBO_REL:is_a
* Copied GO:0051099 to GO:0044093 with type OBO_REL:is_a
* Copied GO:0051100 to GO:0044092 with type OBO_REL:is_a
* Copied GO:0051708 to GO:0006886 with type OBO_REL:is_a
* Copied GO:0052043 to GO:0051851 with type OBO_REL:is_a
* Deleted GO:0052064 --OBO_REL:is_a--> GO:0052509
* Copied GO:0052144 to GO:0052244 with type OBO_REL:is_a
* Copied GO:0052147 to GO:0052247 with type OBO_REL:is_a
* Copied GO:0052161 to GO:0044068 with type OBO_REL:is_a
* Copied GO:0052166 to GO:0052509 with type OBO_REL:is_a
* Copied GO:0052170 to GO:0052037 with type OBO_REL:is_a
* Copied GO:0052204 to GO:0044092 with type OBO_REL:is_a
* Copied GO:0052205 to GO:0065009 with type OBO_REL:is_a
* Copied GO:0052215 to GO:0009453 with type OBO_REL:is_a
* Copied GO:0052218 to GO:0052128 with type OBO_REL:is_a
* Copied GO:0052219 to GO:0052129 with type OBO_REL:is_a
* Copied GO:0052221 to GO:0050918 with type OBO_REL:is_a
* Copied GO:0052223 to GO:0050919 with type OBO_REL:is_a
* Copied GO:0052263 to GO:0052558 with type OBO_REL:is_a
* Copied GO:0052305 to GO:0045089 with type OBO_REL:is_a
* Copied GO:0052305 to GO:0052510 with type OBO_REL:is_a
* Copied GO:0052309 to GO:0052261 with type OBO_REL:is_a
* Copied GO:0052311 to GO:0052310 with type OBO_REL:is_a
* Copied GO:0052348 to GO:0052510 with type OBO_REL:is_a
* Copied GO:0052369 to GO:0052509 with type OBO_REL:is_a
* Copied GO:0052382 to GO:0052251 with type OBO_REL:is_a
* Deleted GO:0052532 --OBO_REL:is_a--> GO:0045089
* Deleted GO:0052532 --OBO_REL:is_a--> GO:0052510
* Deleted GO:0052535 --OBO_REL:is_a--> GO:0052510
* Deleted GO:0052535 --OBO_REL:is_a--> GO:0045089
* Changed definition of GO:0065009 from "Any process that modulates the frequency, rate or extent of molecular functions. Molecular functions are elemental biological activities occurring at the molecular level, such as catalysis or binding." to "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding."
* Changed name of GO:0070575 from "peptide mating pheromone maturation" to "peptide mating pheromone maturation involved in pheromone-induced unidirectional conjugation"
* Changed definition of GO:0070575 from "The formation of a mature peptide mating pheromone by proteolysis and/or modification of a peptide precursor." to "The formation of a mature peptide mating pheromone by proteolysis and/or modification of a peptide precursor, occurring in the context of pheromone-induced unidirectional conjugation."
* Deleted synonym "mating-type peptide pheromone maturation" from GO:0070575
* Deleted synonym "peptide mating pheromone formation" from GO:0070575
* Deleted synonym "peptide mating pheromone processing" from GO:0070575
* Added synonym "mating-type peptide pheromone maturation involved in pheromone-induced unidirectional conjugation" to GO:0070575
* Added general dbxref GOC:vw to synonym mating-type peptide pheromone maturation involved in pheromone-induced unidirectional conjugation of GO:0070575
* Changed synonym scope of GO:0070575 from "Related" to "Exact"
* Added synonym "peptide mating pheromone formation involved in pheromone-induced unidirectional conjugation" to GO:0070575
* Added general dbxref GOC:mah to synonym peptide mating pheromone formation involved in pheromone-induced unidirectional conjugation of GO:0070575
* Changed synonym scope of GO:0070575 from "Related" to "Exact"
* Added synonym "peptide mating pheromone processing involved in pheromone-induced unidirectional conjugation" to GO:0070575
* Added general dbxref GOC:mah to synonym peptide mating pheromone processing involved in pheromone-induced unidirectional conjugation of GO:0070575
* Changed synonym scope of GO:0070575 from "Related" to "Exact"