[Go-diff] GO update 04/23/2009
Remote CVS for Gene Ontology
gocvs at genome.stanford.edu
Thu Apr 23 21:30:55 PDT 2009
OBODIFF of gene_ontology_write.obo version 1.560 by 1.562
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0080095
* Created object of type obo:TERM with id GO:0080096
* Created object of type obo:TERM with id GO:0080097
* Created object of type obo:TERM with id GO:0080098
* Created object of type obo:TERM with id GO:0080099
* Created object of type obo:TERM with id GO:0080100
* Created object of type obo:TERM with id GO:0080101
* Created object of type obo:TERM with id GO:0080102
* Created object of type obo:TERM with id GO:0080103
* Created object of type obo:TERM with id GO:0080104
* Created object of type obo:TERM with id GO:0080105
* Created object of type obo:TERM with id GO:0080106
* Created object of type obo:TERM with id GO:0080107
* Created object of type obo:TERM with id GO:0080108
* Created object of type obo:TERM with id GO:0080109
* Created object of type obo:TERM with id GO:0080110
* Populated new object GO:0080095 (macro)
* Changed name of GO:0080095 from "<new term>" to "phosphatidylethanolamine-sterol O-acyltransferase activity"
* Set definition of GO:0080095 to "Catalysis of the reaction: a phosphatidylethanolamine + a sterol = a sterol ester + a lysophosphatidylethanolamine."
* Added definition dbxref PMID:16020547 to GO:0080095
* Copied GO:0080095 to GO:0008374 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080095
* Populated new object GO:0080096 (macro)
* Changed name of GO:0080096 from "<new term>" to "phosphatidate-sterol O-acyltransferase activity"
* Set definition of GO:0080096 to "Catalysis of the reaction: a phosphatidate + a sterol = a sterol
ester + a lysophosphatidate."
* Added definition dbxref PMID:16020547 to GO:0080096
* Copied GO:0080096 to GO:0008374 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080096
* Populated new object GO:0080097 (macro)
* Changed name of GO:0080097 from "<new term>" to "L-tryptophan:pyruvate aminotransferase activity"
* Added comment "This reaction falls within the larger set of reactions associated with EC 2.6.1.28 (See BRENDA: http://www.brenda-enzymes.org/php/result_flat.php4?ecno=2.6.1.28; note: 3-indole-2-oxopropanoate = indolepyruvate)."
* Set definition of GO:0080097 to "Catalysis of the reaction: L-tryptophan + pyruvate = indolepyruvate + L-alanine."
* Added definition dbxref PMID:18394996 to GO:0080097
* Copied GO:0080097 to GO:0070529 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080097
* Populated new object GO:0080098 (macro)
* Changed name of GO:0080098 from "<new term>" to "L-tyrosine:pyruvate aminotransferase activity"
* Added comment "This reaction falls within the larger set of reactions associated with EC 2.6.1.28 and several other EC numbers (See BRENDA: http://www.brenda-enzymes.org/php/result_flat.php4?ecno=2.6.1.44)."
* Set definition of GO:0080098 to "Catalysis of the reaction: L-tyrosine + pyruvate = 4-hydroxyphenylpyruvate + L-alanine."
* Added definition dbxref PMID:18394996 to GO:0080098
* Copied GO:0080098 to GO:0070547 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080098
* Populated new object GO:0080099 (macro)
* Changed name of GO:0080099 from "<new term>" to "L-methionine:2-oxoglutarate aminotransferase activity"
* Added comment "This reaction falls within the larger set of reactions associated with EC 2.6.1.5 (See BRENDA: http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.5)."
* Set definition of GO:0080099 to "Catalysis of the reaction: L-methionine + 2-oxoglutarate = 4-methylthio-2-oxobutyrate + L-glutamate."
* Added definition dbxref PMID:18394996 to GO:0080099
* Added synonym "L-methionine:alpha-ketoglutarate aminotransferase activity" to GO:0080099
* Changed synonym scope of GO:0080099 from "Related" to "Exact"
* Copied GO:0080099 to GO:0010326 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080099
* Populated new object GO:0080100 (macro)
* Changed name of GO:0080100 from "<new term>" to "L-glutamine:2-oxoglutarate aminotransferase activity"
* Set definition of GO:0080100 to "Catalysis of the reaction: L-glutamine + 2-oxoglutarate = 2-oxoglutaramate + L-glutamate. This reaction falls within the larger set of reactions associated with EC 2.6.1.50 (See BRENDA: http://www.brenda-enzymes.org/php/result_flat.php4?ecno=2.6.1.50)."
* Added definition dbxref PMID:18394996 to GO:0080100
* Added synonym "L-glutamine:alpha-ketoglutarate aminotransferase activity" to GO:0080100
* Changed synonym scope of GO:0080100 from "Related" to "Exact"
* Copied GO:0080100 to GO:0008483 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080100
* Populated new object GO:0080101 (macro)
* Changed name of GO:0080101 from "<new term>" to "phosphatidyl-N-dimethylethanolamine N-methyltransferase activity"
* Set definition of GO:0080101 to "Catalysis of the reaction: S-adenosyl-L-methionine + phosphatidyl-N-dimethylethanolamine = S-adenosyl-L-homocysteine + phosphatidylcholine."
* Added definition dbxref E.C.:2.1.1.71 to GO:0080101
* Added definition dbxref PMID:19366698 to GO:0080101
* Copied GO:0080101 to GO:0008170 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080101
* Populated new object GO:0080102 (macro)
* Changed name of GO:0080102 from "<new term>" to "3-methylthiopropyl glucosinolate S-oxygenase activity"
* Set definition of GO:0080102 to "Catalysis of the conversion of 3-methylthiopropyl glucosinolate to 3-methylsulfinylpropyl glucosinolate."
* Added definition dbxref PMID:18799661 to GO:0080102
* Copied GO:0080102 to GO:0016705 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080102
* Populated new object GO:0080103 (macro)
* Changed name of GO:0080103 from "<new term>" to "4-methylthiopropyl glucosinolate S-oxygenase activity"
* Set definition of GO:0080103 to "Catalysis of the conversion of 4-methylthiopropyl glucosinolate to 4-methylsulfinylpropyl glucosinolate."
* Added definition dbxref PMID:18799661 to GO:0080103
* Copied GO:0080103 to GO:0016705 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080103
* Populated new object GO:0080104 (macro)
* Changed name of GO:0080104 from "<new term>" to "5-methylthiopropyl glucosinolate S-oxygenase activity"
* Set definition of GO:0080104 to "Catalysis of the conversion of 5-methylthiopropyl glucosinolate to 5-methylsulfinylpropyl glucosinolate."
* Added definition dbxref PMID:18799661 to GO:0080104
* Copied GO:0080104 to GO:0016705 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080104
* Populated new object GO:0080105 (macro)
* Changed name of GO:0080105 from "<new term>" to "6-methylthiopropyl glucosinolate S-oxygenase activity"
* Set definition of GO:0080105 to "Catalysis of the conversion of 6-methylthiopropyl glucosinolate to 6-methylsulfinylpropyl glucosinolate."
* Added definition dbxref PMID:18799661 to GO:0080105
* Copied GO:0080105 to GO:0016705 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080105
* Populated new object GO:0080106 (macro)
* Changed name of GO:0080106 from "<new term>" to "7-methylthiopropyl glucosinolate S-oxygenase activity"
* Set definition of GO:0080106 to "Catalysis of the conversion of 7-methylthiopropyl glucosinolate to 7-methylsulfinylpropyl glucosinolate."
* Added definition dbxref PMID:18799661 to GO:0080106
* Copied GO:0080106 to GO:0016705 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080106
* Populated new object GO:0080107 (macro)
* Changed name of GO:0080107 from "<new term>" to "8-methylthiopropyl glucosinolate S-oxygenase activity"
* Set definition of GO:0080107 to "Catalysis of the conversion of 8-methylthiopropyl glucosinolate to 8-methylsulfinylpropyl glucosinolate."
* Added definition dbxref PMID:18799661 to GO:0080107
* Copied GO:0080107 to GO:0016705 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080107
* Populated new object GO:0080108 (macro)
* Changed name of GO:0080108 from "<new term>" to "S-alkylthiohydroximate lyase activity"
* Set definition of GO:0080108 to "Catalysis of the conversion of a S-alkylthiohydroximate to a thiohydroximate."
* Added definition dbxref PMID:14871316 to GO:0080108
* Added synonym "S-alkylthiohydroximate C-S lyase activity" to GO:0080108
* Changed synonym scope of GO:0080108 from "Related" to "Narrow"
* Copied GO:0080108 to GO:0016846 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080108
* Populated new object GO:0080109 (macro)
* Changed name of GO:0080109 from "<new term>" to "indole-3-acetonitrile nitrile hydratase activity"
* Set definition of GO:0080109 to "Catalysis of the reaction: indole-3-acetonitrile (IAN) + H2O = indole-3-acetamide (IAM)."
* Added definition dbxref E.C.:4.2.1.84 to GO:0080109
* Added definition dbxref MetaCyc:RXN-7567 to GO:0080109
* Added definition dbxref PMID:11607511 to GO:0080109
* Added definition dbxref PMID:12430025 to GO:0080109
* Copied GO:0080109 to GO:0018822 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080109
* Populated new object GO:0080110 (macro)
* Changed name of GO:0080110 from "<new term>" to "sporopollenin biosynthetic process"
* Set definition of GO:0080110 to "The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer."
* Added definition dbxref PMID:19218397 to GO:0080110
* Added synonym "sporopollenin biosynthesis" to GO:0080110
* Changed synonym scope of GO:0080110 from "Related" to "Exact"
* Copied GO:0080110 to GO:0019438 with type OBO_REL:is_a
* Copied GO:0080110 to GO:0010584 with type part_of
* Assigned namespace "biological_process" to GO:0080110
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