[Go-diff] GO update 04/24/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Apr 24 21:30:56 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.562 by 1.563

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070583
* Created object of type obo:TERM with id GO:0070584
* Created object of type obo:TERM with id GO:0070585
* Created object of type obo:TERM with id GO:0070586
* Created object of type obo:TERM with id GO:0070587
* Populated new object GO:0070583 (macro)
  * Changed name of GO:0070583 from "<new term>" to "spore membrane bending pathway"
  * Set definition of GO:0070583 to "The process by which a bending force is generated in the prospore membrane to form the characteristic curved shape of the prospore."
  * Added definition dbxref GOC:df to GO:0070583
  * Added definition dbxref PMID:18756268 to GO:0070583
  * Added synonym "ascospore-type prospore membrane bending" to GO:0070583
  * Added general dbxref GOC:mah to synonym ascospore-type prospore membrane bending of GO:0070583
  * Changed synonym scope of GO:0070583 from "Related" to "Exact"
  * Added synonym "forespore membrane bending" to GO:0070583
  * Added general dbxref GOC:mah to synonym forespore membrane bending of GO:0070583
  * Changed synonym scope of GO:0070583 from "Related" to "Exact"
  * Added synonym "FSM bending" to GO:0070583
  * Added general dbxref GOC:mah to synonym FSM bending of GO:0070583
  * Changed synonym scope of GO:0070583 from "Related" to "Exact"
  * Copied GO:0070583 to GO:0032120 with type part_of
  * Copied GO:0070583 to GO:0016044 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070583
* Populated new object GO:0070584 (macro)
  * Changed name of GO:0070584 from "<new term>" to "mitochondrion morphogenesis"
  * Added comment "This term was added by GO_REF:0000021."
  * Set definition of GO:0070584 to "The process by which the anatomical structures of a mitochondrion are generated and organized. Morphogenesis pertains to the creation of form."
  * Added definition dbxref GOC:mah to GO:0070584
  * Copied GO:0070584 to GO:0007005 with type OBO_REL:is_a
  * Copied GO:0070584 to GO:0000902 with type part_of
  * Copied GO:0070584 to GO:0032990 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070584
* Populated new object GO:0070585 (macro)
  * Changed name of GO:0070585 from "<new term>" to "protein localization in mitochondrion"
  * Set definition of GO:0070585 to "A process by which a protein is transported to, or maintained in, a location within the mitochondrion."
  * Added definition dbxref GOC:ecd to GO:0070585
  * Copied GO:0070585 to GO:0033365 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070585
* Populated new object GO:0070586 (macro)
  * Changed name of GO:0070586 from "<new term>" to "cell-cell adhesion involved in gastrulation"
  * Added comment "This term was added by GO_REF:0000021."
  * Set definition of GO:0070586 to "The attachment of one cell to another cell affecting
gastrulation."
  * Added definition dbxref GOC:dsf to GO:0070586
  * Added definition dbxref PMID:19091770 to GO:0070586
  * Copied GO:0070586 to GO:0007369 with type part_of
  * Copied GO:0070586 to GO:0016337 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070586
* Populated new object GO:0070587 (macro)
  * Changed name of GO:0070587 from "<new term>" to "regulation of cell-cell adhesion involved in gastrulation"
  * Set definition of GO:0070587 to "Any process that modulates the frequency, rate, or extent of attachment of a cell to another cell affecting gastrulation."
  * Added definition dbxref GOC:dsf to GO:0070587
  * Added definition dbxref PMID:19091770 to GO:0070587
  * Copied GO:0070587 to GO:0070586 with type regulates
  * Copied GO:0070587 to GO:0022407 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070587
* Changed definition of GO:0000042 from "The process of directing proteins towards the Golgi using signals contained within the protein." to "The process of directing proteins towards the Golgi; usually uses signals contained within the protein."
* Added definition dbxref GOC:mah to GO:0000042
* Copied GO:0000042 to GO:0034067 with type part_of
* Copied GO:0000335 to GO:0045910 with type OBO_REL:is_a
* Copied GO:0000336 to GO:0045911 with type OBO_REL:is_a
* Copied GO:0000337 to GO:0000018 with type OBO_REL:is_a
* Added synonym "histone chaperone" to GO:0006334
* Added general dbxref GOC:vw to synonym histone chaperone of GO:0006334
* Added synonym "protein targeting to nucleus" to GO:0006606
* Added general dbxref GOC:mah to synonym protein targeting to nucleus of GO:0006606
* Changed synonym scope of GO:0006606 from "Related" to "Exact"
* Changed definition of GO:0006612 from "The process of directing proteins towards a membrane using signals contained within the protein." to "The process of directing proteins towards a membrane, usually using signals contained within the protein."
* Changed definition of GO:0006623 from "The process of directing proteins towards the vacuole using signals contained within the protein." to "The process of directing proteins towards the vacuole, usually using signals contained within the protein."
* Changed definition of GO:0006625 from "The process of directing proteins towards the peroxisome using signals contained within the protein." to "The process of directing proteins towards the peroxisome, usually using signals contained within the protein."
* added secondary id GO:0043681 to GO:0006626
* Changed definition of GO:0006626 from "The process of directing proteins towards and into the mitochondrion, mediated by mitochondrial proteins that recognize signals contained within the imported protein." to "The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein."
* Added synonym "protein import into mitochondrion" to GO:0006626
* Changed synonym scope of GO:0006626 from "Related" to "Exact"
* Copied GO:0006626 to GO:0070585 with type part_of
* Copied GO:0006626 to GO:0017038 with type OBO_REL:is_a
* Changed definition of GO:0007005 from "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphology and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components." to "A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components."
* Deleted GO:0010528 --OBO_REL:is_a--> GO:0000018
* Copied GO:0010528 to GO:0050794 with type OBO_REL:is_a
* Deleted GO:0010529 --OBO_REL:is_a--> GO:0045910
* Copied GO:0010529 to GO:0048523 with type OBO_REL:is_a
* Deleted GO:0010530 --OBO_REL:is_a--> GO:0045911
* Copied GO:0010530 to GO:0048522 with type OBO_REL:is_a
* Deleted GO:0030150 --OBO_REL:is_a--> GO:0043681
* Copied GO:0030150 to GO:0006626 with type OBO_REL:is_a
* Added synonym "replisome progression complex" to GO:0031298
* Added general dbxref GOC:vw to synonym replisome progression complex of GO:0031298
* Changed synonym scope of GO:0031298 from "Related" to "Exact"
* Added synonym "TIMELESS-TIPIN complex" to GO:0031298
* Added general dbxref GOC:mah to synonym TIMELESS-TIPIN complex of GO:0031298
* Added general dbxref GOC:vw to synonym TIMELESS-TIPIN complex of GO:0031298
* Changed synonym scope of GO:0031298 from "Related" to "Narrow"
* Changed name of GO:0034080 from "DNA replication-independent nucleosome assembly at centromere" to "CenH3-containing nucleosome assembly at centromere"
* Changed definition of GO:0034080 from "The formation of nucleosomes containing the histone H3 variant CENP-A to form centromeric chromatin; occurs outside the context of DNA replication." to "The formation of nucleosomes containing the histone H3 variant CenH3 (also called CENP-A) to form centromeric chromatin; occurs outside the context of DNA replication."
* Added definition dbxref GOC:vw to GO:0034080
* Added definition dbxref PMID:19217403 to GO:0034080
* Added general dbxref GOC:mah to synonym centromeric DNA replication-independent nucleosome assembly of GO:0034080
* Added synonym "centromere specific nucleosome exchange" to GO:0034080
* Added general dbxref GOC:mah to synonym centromere specific nucleosome exchange of GO:0034080
* Added synonym "centromere-specific histone exchange" to GO:0034080
* Added general dbxref GOC:mah to synonym centromere-specific histone exchange of GO:0034080
* Added general dbxref GOC:vw to synonym centromere-specific histone exchange of GO:0034080
* Changed synonym scope of GO:0034080 from "Related" to "Exact"
* Added synonym "centromere-specific nucleosome assembly" to GO:0034080
* Added general dbxref GOC:vw to synonym centromere-specific nucleosome assembly of GO:0034080
* Changed synonym scope of GO:0034080 from "Related" to "Exact"
* Added synonym "DNA replication-independent nucleosome assembly at centromere" to GO:0034080
* Added general dbxref GOC:mah to synonym DNA replication-independent nucleosome assembly at centromere of GO:0034080
* Changed synonym scope of GO:0034080 from "Related" to "Exact"
* Copied GO:0034080 to GO:0043486 with type OBO_REL:is_a
* Copied GO:0034115 to GO:0070587 with type OBO_REL:is_a
* Copied GO:0034116 to GO:0070587 with type OBO_REL:is_a
* Copied GO:0035318 to GO:0070584 with type OBO_REL:is_a
* Copied GO:0035319 to GO:0070584 with type OBO_REL:is_a
* Added synonym "histone chaperone" to GO:0043486
* Added general dbxref GOC:vw to synonym histone chaperone of GO:0043486
* Deleted GO:0043681 --OBO_REL:is_a--> GO:0017038
* Deleted GO:0043681 --OBO_REL:is_a--> GO:0006626
* Deleted GO:0045039 --OBO_REL:is_a--> GO:0043681
* Deleted GO:0030150 --OBO_REL:is_a--> GO:0043681
* Deleted GO:0045041 --OBO_REL:is_a--> GO:0043681
* Deleted GO:0045040 --OBO_REL:is_a--> GO:0043681
* Destroyed object GO:0043681
* Changed definition of GO:0045036 from "The process of directing proteins towards the chloroplast using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved." to "The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved."
* Deleted GO:0045039 --OBO_REL:is_a--> GO:0043681
* Copied GO:0045039 to GO:0006626 with type OBO_REL:is_a
* Deleted GO:0045040 --OBO_REL:is_a--> GO:0043681
* Copied GO:0045040 to GO:0006626 with type OBO_REL:is_a
* Deleted GO:0045041 --OBO_REL:is_a--> GO:0043681
* Copied GO:0045041 to GO:0006626 with type OBO_REL:is_a
* Copied GO:0048812 to GO:0070584 with type OBO_REL:is_a
* Copied GO:0060271 to GO:0070584 with type OBO_REL:is_a

More information about the Go-diff mailing list