From gocvs at genome.stanford.edu Mon Aug 3 21:30:11 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 3 Aug 2009 21:30:11 -0700 Subject: [Go-diff] GO update 08/03/2009 Message-ID: <200908040430.n744UBaa023074@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.725 by 1.726 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0090022 * Created object of type obo:TERM with id GO:0090023 * Created object of type obo:TERM with id GO:0090024 * Created object of type obo:TERM with id GO:0090025 * Created object of type obo:TERM with id GO:0090026 * Created object of type obo:TERM with id GO:0090027 * Created object of type obo:TERM with id GO:0090028 * Created object of type obo:TERM with id GO:0090029 * Created object of type obo:TERM with id GO:0090030 * Created object of type obo:TERM with id GO:0090031 * Created object of type obo:TERM with id GO:0090032 * Created object of type obo:TERM with id GO:0090033 * Created object of type obo:TERM with id GO:0090034 * Created object of type obo:TERM with id GO:0090035 * Created object of type obo:TERM with id GO:0090036 * Created object of type obo:TERM with id GO:0090037 * Created object of type obo:TERM with id GO:0090038 * Created object of type obo:TERM with id GO:0090039 * Created object of type obo:TERM with id GO:0090040 * Created object of type obo:TERM with id GO:0090041 * Created object of type obo:TERM with id GO:0090042 * Created object of type obo:TERM with id GO:0090043 * Created object of type obo:TERM with id GO:0090044 * Created object of type obo:TERM with id GO:0090045 * [Changed name of GO:0090022 from "null" to "regulation of neutrophil chemotaxis", Set definition of GO:0090022 to "Any process that modulates the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.", Added definition dbxref GOC:dph to GO:0090022, Added definition dbxref GOC:tb to GO:0090022, Created link GO:0090022 -regulates-> GO:0030593, Created link GO:0090022 -OBO_REL:is_a-> GO:0002688, Assigned namespace "biological_process" to GO:0090022] * Changed name of GO:0090022 from "null" to "regulation of neutrophil chemotaxis" * Set definition of GO:0090022 to "Any process that modulates the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding." * Added definition dbxref GOC:dph to GO:0090022 * Added definition dbxref GOC:tb to GO:0090022 * Created link GO:0090022 -regulates-> GO:0030593 * Created link GO:0090022 -OBO_REL:is_a-> GO:0002688 * Assigned namespace "biological_process" to GO:0090022 * [Changed name of GO:0090023 from "null" to "positive regulation of neutrophil chemotaxis", Set definition of GO:0090023 to "Any process that increases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.", Added definition dbxref GOC:dph to GO:0090023, Added definition dbxref GOC:tb to GO:0090023, Created link GO:0090023 -OBO_REL:is_a-> GO:0090022, Created link GO:0090023 -positively_regulates-> GO:0030593, Assigned namespace "biological_process" to GO:0090023] * Changed name of GO:0090023 from "null" to "positive regulation of neutrophil chemotaxis" * Set definition of GO:0090023 to "Any process that increases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding." * Added definition dbxref GOC:dph to GO:0090023 * Added definition dbxref GOC:tb to GO:0090023 * Created link GO:0090023 -OBO_REL:is_a-> GO:0090022 * Created link GO:0090023 -positively_regulates-> GO:0030593 * Assigned namespace "biological_process" to GO:0090023 * [Changed name of GO:0090024 from "null" to "negative regulation of neutrophil chemotaxis", Set definition of GO:0090024 to "Any process that decreases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.", Added definition dbxref GOC:dph to GO:0090024, Added definition dbxref GOC:tb to GO:0090024, Created link GO:0090024 -negatively_regulates-> GO:0030593, Created link GO:0090024 -OBO_REL:is_a-> GO:0090022, Assigned namespace "biological_process" to GO:0090024] * Changed name of GO:0090024 from "null" to "negative regulation of neutrophil chemotaxis" * Set definition of GO:0090024 to "Any process that decreases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding." * Added definition dbxref GOC:dph to GO:0090024 * Added definition dbxref GOC:tb to GO:0090024 * Created link GO:0090024 -negatively_regulates-> GO:0030593 * Created link GO:0090024 -OBO_REL:is_a-> GO:0090022 * Assigned namespace "biological_process" to GO:0090024 * [Changed name of GO:0090025 from "null" to "regulation of monocyte chemotaxis", Set definition of GO:0090025 to "Any process that modulates the frequency, rate, or extent of monocyte chemotaxis.", Added definition dbxref GOC:dph to GO:0090025, Added definition dbxref GOC:tb to GO:0090025, Created link GO:0090025 -regulates-> GO:0002548, Created link GO:0090025 -OBO_REL:is_a-> GO:0002688, Assigned namespace "biological_process" to GO:0090025] * Changed name of GO:0090025 from "null" to "regulation of monocyte chemotaxis" * Set definition of GO:0090025 to "Any process that modulates the frequency, rate, or extent of monocyte chemotaxis." * Added definition dbxref GOC:dph to GO:0090025 * Added definition dbxref GOC:tb to GO:0090025 * Created link GO:0090025 -regulates-> GO:0002548 * Created link GO:0090025 -OBO_REL:is_a-> GO:0002688 * Assigned namespace "biological_process" to GO:0090025 * [Changed name of GO:0090026 from "null" to "positive regulation of monocyte chemotaxis", Set definition of GO:0090026 to "Any process that increases the frequency, rate, or extent of monocyte chemotaxis.", Added definition dbxref GOC:dph to GO:0090026, Added definition dbxref GOC:tb to GO:0090026, Created link GO:0090026 -positively_regulates-> GO:0002548, Created link GO:0090026 -OBO_REL:is_a-> GO:0090025, Assigned namespace "biological_process" to GO:0090026] * Changed name of GO:0090026 from "null" to "positive regulation of monocyte chemotaxis" * Set definition of GO:0090026 to "Any process that increases the frequency, rate, or extent of monocyte chemotaxis." * Added definition dbxref GOC:dph to GO:0090026 * Added definition dbxref GOC:tb to GO:0090026 * Created link GO:0090026 -positively_regulates-> GO:0002548 * Created link GO:0090026 -OBO_REL:is_a-> GO:0090025 * Assigned namespace "biological_process" to GO:0090026 * [Changed name of GO:0090027 from "null" to "negative regulation of monocyte chemotaxis", Set definition of GO:0090027 to "Any process that decreases the frequency, rate, or extent of monocyte chemotaxis.", Added definition dbxref GOC:dph to GO:0090027, Added definition dbxref GOC:tb to GO:0090027, Created link GO:0090027 -OBO_REL:is_a-> GO:0090025, Created link GO:0090027 -negatively_regulates-> GO:0002548, Assigned namespace "biological_process" to GO:0090027] * Changed name of GO:0090027 from "null" to "negative regulation of monocyte chemotaxis" * Set definition of GO:0090027 to "Any process that decreases the frequency, rate, or extent of monocyte chemotaxis." * Added definition dbxref GOC:dph to GO:0090027 * Added definition dbxref GOC:tb to GO:0090027 * Created link GO:0090027 -OBO_REL:is_a-> GO:0090025 * Created link GO:0090027 -negatively_regulates-> GO:0002548 * Assigned namespace "biological_process" to GO:0090027 * [Changed name of GO:0090028 from "null" to "positive regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion", Set definition of GO:0090028 to "Any process that increases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion.", Added definition dbxref GOC:dph to GO:0090028, Added definition dbxref GOC:tb to GO:0090028, Created link GO:0090028 -positively_regulates-> GO:0000750, Created link GO:0090028 -OBO_REL:is_a-> GO:0010969, Created link GO:0090028 -OBO_REL:is_a-> GO:0048584, Assigned namespace "biological_process" to GO:0090028] * Changed name of GO:0090028 from "null" to "positive regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion" * Set definition of GO:0090028 to "Any process that increases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion." * Added definition dbxref GOC:dph to GO:0090028 * Added definition dbxref GOC:tb to GO:0090028 * Created link GO:0090028 -positively_regulates-> GO:0000750 * Created link GO:0090028 -OBO_REL:is_a-> GO:0010969 * Created link GO:0090028 -OBO_REL:is_a-> GO:0048584 * Assigned namespace "biological_process" to GO:0090028 * [Changed name of GO:0090029 from "null" to "negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion", Set definition of GO:0090029 to "Any process that decreases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion", Added definition dbxref GOC:dph to GO:0090029, Added definition dbxref GOC:tb to GO:0090029, Created link GO:0090029 -OBO_REL:is_a-> GO:0048585, Created link GO:0090029 -negatively_regulates-> GO:0000750, Created link GO:0090029 -OBO_REL:is_a-> GO:0010969, Assigned namespace "biological_process" to GO:0090029] * Changed name of GO:0090029 from "null" to "negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion" * Set definition of GO:0090029 to "Any process that decreases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion" * Added definition dbxref GOC:dph to GO:0090029 * Added definition dbxref GOC:tb to GO:0090029 * Created link GO:0090029 -OBO_REL:is_a-> GO:0048585 * Created link GO:0090029 -negatively_regulates-> GO:0000750 * Created link GO:0090029 -OBO_REL:is_a-> GO:0010969 * Assigned namespace "biological_process" to GO:0090029 * [Changed name of GO:0090030 from "null" to "regulation of steroid hormone biosynthetic process", Set definition of GO:0090030 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.", Added definition dbxref GOC:dph to GO:0090030, Added definition dbxref GOC:tb to GO:0090030, Created link GO:0090030 -OBO_REL:is_a-> GO:0050810, Created link GO:0090030 -OBO_REL:is_a-> GO:0046885, Assigned namespace "biological_process" to GO:0090030] * Changed name of GO:0090030 from "null" to "regulation of steroid hormone biosynthetic process" * Set definition of GO:0090030 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones." * Added definition dbxref GOC:dph to GO:0090030 * Added definition dbxref GOC:tb to GO:0090030 * Created link GO:0090030 -OBO_REL:is_a-> GO:0050810 * Created link GO:0090030 -OBO_REL:is_a-> GO:0046885 * Assigned namespace "biological_process" to GO:0090030 * [Changed name of GO:0090031 from "null" to "positive regulation of steroid hormone biosynthetic process", Set definition of GO:0090031 to "Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.", Added definition dbxref GOC:dph to GO:0090031, Added definition dbxref GOC:tb to GO:0090031, Created link GO:0090031 -OBO_REL:is_a-> GO:0046886, Created link GO:0090031 -OBO_REL:is_a-> GO:0010893, Created link GO:0090031 -OBO_REL:is_a-> GO:0090030, Assigned namespace "biological_process" to GO:0090031] * Changed name of GO:0090031 from "null" to "positive regulation of steroid hormone biosynthetic process" * Set definition of GO:0090031 to "Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones." * Added definition dbxref GOC:dph to GO:0090031 * Added definition dbxref GOC:tb to GO:0090031 * Created link GO:0090031 -OBO_REL:is_a-> GO:0046886 * Created link GO:0090031 -OBO_REL:is_a-> GO:0010893 * Created link GO:0090031 -OBO_REL:is_a-> GO:0090030 * Assigned namespace "biological_process" to GO:0090031 * [Changed name of GO:0090032 from "null" to "negative regulation of steroid hormone biosynthetic process", Set definition of GO:0090032 to "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.", Added definition dbxref GOC:dph to GO:0090032, Added definition dbxref GOC:tb to GO:0090032, Created link GO:0090032 -OBO_REL:is_a-> GO:0090030, Created link GO:0090032 -OBO_REL:is_a-> GO:0010894, Created link GO:0090032 -OBO_REL:is_a-> GO:0032353, Assigned namespace "biological_process" to GO:0090032] * Changed name of GO:0090032 from "null" to "negative regulation of steroid hormone biosynthetic process" * Set definition of GO:0090032 to "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones." * Added definition dbxref GOC:dph to GO:0090032 * Added definition dbxref GOC:tb to GO:0090032 * Created link GO:0090032 -OBO_REL:is_a-> GO:0090030 * Created link GO:0090032 -OBO_REL:is_a-> GO:0010894 * Created link GO:0090032 -OBO_REL:is_a-> GO:0032353 * Assigned namespace "biological_process" to GO:0090032 * [Changed name of GO:0090033 from "null" to "positive regulation of filamentous growth", Set definition of GO:0090033 to "Any process that increases the frequency, rate or extent of the process by which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.", Added definition dbxref GOC:dph to GO:0090033, Added definition dbxref GOC:tb to GO:0090033, Created link GO:0090033 -OBO_REL:is_a-> GO:0010570, Created link GO:0090033 -positively_regulates-> GO:0030447, Assigned namespace "biological_process" to GO:0090033] * Changed name of GO:0090033 from "null" to "positive regulation of filamentous growth" * Set definition of GO:0090033 to "Any process that increases the frequency, rate or extent of the process by which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape." * Added definition dbxref GOC:dph to GO:0090033 * Added definition dbxref GOC:tb to GO:0090033 * Created link GO:0090033 -OBO_REL:is_a-> GO:0010570 * Created link GO:0090033 -positively_regulates-> GO:0030447 * Assigned namespace "biological_process" to GO:0090033 * [Changed name of GO:0090034 from "null" to "regulation of cellular chaperone-mediated protein complex assembly", Set definition of GO:0090034 to "Any process that modulates the frequency, rate, or extent of cellular chaperone-mediated protein complex assembly. Cellular chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell, mediated by chaperone molecules that do not form part of the finished complex.", Added definition dbxref GOC:dph to GO:0090034, Added definition dbxref GOC:tb to GO:0090034, Created link GO:0090034 -regulates-> GO:0034619, Created link GO:0090034 -OBO_REL:is_a-> GO:0043254, Created link GO:0090034 -OBO_REL:is_a-> GO:0050794, Assigned namespace "biological_process" to GO:0090034] * Changed name of GO:0090034 from "null" to "regulation of cellular chaperone-mediated protein complex assembly" * Set definition of GO:0090034 to "Any process that modulates the frequency, rate, or extent of cellular chaperone-mediated protein complex assembly. Cellular chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell, mediated by chaperone molecules that do not form part of the finished complex." * Added definition dbxref GOC:dph to GO:0090034 * Added definition dbxref GOC:tb to GO:0090034 * Created link GO:0090034 -regulates-> GO:0034619 * Created link GO:0090034 -OBO_REL:is_a-> GO:0043254 * Created link GO:0090034 -OBO_REL:is_a-> GO:0050794 * Assigned namespace "biological_process" to GO:0090034 * [Changed name of GO:0090035 from "null" to "positive regulation of cellular chaperone-mediated protein complex assembly", Set definition of GO:0090035 to "Any process that increases the frequency, rate, or extent of cellular chaperone-mediated protein complex assembly. Cellular chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell, mediated by chaperone molecules that do not form part of the finished complex.", Added definition dbxref GOC:dph to GO:0090035, Added definition dbxref GOC:tb to GO:0090035, Created link GO:0090035 -OBO_REL:is_a-> GO:0048522, Created link GO:0090035 -OBO_REL:is_a-> GO:0090034, Created link GO:0090035 -OBO_REL:is_a-> GO:0031334, Created link GO:0090035 -positively_regulates-> GO:0034619, Assigned namespace "biological_process" to GO:0090035] * Changed name of GO:0090035 from "null" to "positive regulation of cellular chaperone-mediated protein complex assembly" * Set definition of GO:0090035 to "Any process that increases the frequency, rate, or extent of cellular chaperone-mediated protein complex assembly. Cellular chaperone-mediated protein complex assembly is the aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell, mediated by chaperone molecules that do not form part of the finished complex." * Added definition dbxref GOC:dph to GO:0090035 * Added definition dbxref GOC:tb to GO:0090035 * Created link GO:0090035 -OBO_REL:is_a-> GO:0048522 * Created link GO:0090035 -OBO_REL:is_a-> GO:0090034 * Created link GO:0090035 -OBO_REL:is_a-> GO:0031334 * Created link GO:0090035 -positively_regulates-> GO:0034619 * Assigned namespace "biological_process" to GO:0090035 * [Changed name of GO:0090036 from "null" to "regulation of protein kinase C signaling cascade", Set definition of GO:0090036 to "Any process that modulates the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.", Added definition dbxref GOC:dph to GO:0090036, Added definition dbxref GOC:tb to GO:0090036, Created link GO:0090036 -OBO_REL:is_a-> GO:0010627, Created link GO:0090036 -regulates-> GO:0070528, Assigned namespace "biological_process" to GO:0090036] * Changed name of GO:0090036 from "null" to "regulation of protein kinase C signaling cascade" * Set definition of GO:0090036 to "Any process that modulates the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." * Added definition dbxref GOC:dph to GO:0090036 * Added definition dbxref GOC:tb to GO:0090036 * Created link GO:0090036 -OBO_REL:is_a-> GO:0010627 * Created link GO:0090036 -regulates-> GO:0070528 * Assigned namespace "biological_process" to GO:0090036 * [Changed name of GO:0090037 from "null" to "positive regulation of protein kinase C signaling cascade", Set definition of GO:0090037 to "Any process that increases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.", Added definition dbxref GOC:dph to GO:0090037, Added definition dbxref GOC:tb to GO:0090037, Created link GO:0090037 -positively_regulates-> GO:0070528, Created link GO:0090037 -OBO_REL:is_a-> GO:0010740, Created link GO:0090037 -OBO_REL:is_a-> GO:0090036, Assigned namespace "biological_process" to GO:0090037] * Changed name of GO:0090037 from "null" to "positive regulation of protein kinase C signaling cascade" * Set definition of GO:0090037 to "Any process that increases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." * Added definition dbxref GOC:dph to GO:0090037 * Added definition dbxref GOC:tb to GO:0090037 * Created link GO:0090037 -positively_regulates-> GO:0070528 * Created link GO:0090037 -OBO_REL:is_a-> GO:0010740 * Created link GO:0090037 -OBO_REL:is_a-> GO:0090036 * Assigned namespace "biological_process" to GO:0090037 * [Changed name of GO:0090038 from "null" to "negative regulation of protein kinase C signaling cascade", Set definition of GO:0090038 to "Any process that decreases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.", Added definition dbxref GOC:dph to GO:0090038, Added definition dbxref GOC:tb to GO:0090038, Created link GO:0090038 -OBO_REL:is_a-> GO:0090036, Created link GO:0090038 -negatively_regulates-> GO:0070528, Created link GO:0090038 -OBO_REL:is_a-> GO:0010741, Assigned namespace "biological_process" to GO:0090038] * Changed name of GO:0090038 from "null" to "negative regulation of protein kinase C signaling cascade" * Set definition of GO:0090038 to "Any process that decreases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." * Added definition dbxref GOC:dph to GO:0090038 * Added definition dbxref GOC:tb to GO:0090038 * Created link GO:0090038 -OBO_REL:is_a-> GO:0090036 * Created link GO:0090038 -negatively_regulates-> GO:0070528 * Created link GO:0090038 -OBO_REL:is_a-> GO:0010741 * Assigned namespace "biological_process" to GO:0090038 * [Changed name of GO:0090039 from "null" to "regulation of gene-specific transcription elongation from RNA polymerase II promoter", Set definition of GO:0090039 to "Any process that modulates the frequency, rate or extent of gene-specific RNA elongation, the extension of an RNA molecule from a specific gene or genes after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II.", Added definition dbxref GOC:dph to GO:0090039, Added definition dbxref GOC:tb to GO:0090039, Created link GO:0090039 -OBO_REL:is_a-> GO:0034243, Created link GO:0090039 -OBO_REL:is_a-> GO:0032583, Assigned namespace "biological_process" to GO:0090039] * Changed name of GO:0090039 from "null" to "regulation of gene-specific transcription elongation from RNA polymerase II promoter" * Set definition of GO:0090039 to "Any process that modulates the frequency, rate or extent of gene-specific RNA elongation, the extension of an RNA molecule from a specific gene or genes after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II." * Added definition dbxref GOC:dph to GO:0090039 * Added definition dbxref GOC:tb to GO:0090039 * Created link GO:0090039 -OBO_REL:is_a-> GO:0034243 * Created link GO:0090039 -OBO_REL:is_a-> GO:0032583 * Assigned namespace "biological_process" to GO:0090039 * [Changed name of GO:0090040 from "null" to "positive regulation of gene-specific transcription elongation from RNA polymerase II promoter", Set definition of GO:0090040 to "Any process that increases the frequency, rate or extent of gene-specific RNA elongation, the extension of an RNA molecule from a specific gene or genes after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II.", Added definition dbxref GOC:dph to GO:0090040, Added definition dbxref GOC:tb to GO:0090040, Created link GO:0090040 -OBO_REL:is_a-> GO:0043193, Created link GO:0090040 -OBO_REL:is_a-> GO:0090039, Assigned namespace "biological_process" to GO:0090040] * Changed name of GO:0090040 from "null" to "positive regulation of gene-specific transcription elongation from RNA polymerase II promoter" * Set definition of GO:0090040 to "Any process that increases the frequency, rate or extent of gene-specific RNA elongation, the extension of an RNA molecule from a specific gene or genes after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II." * Added definition dbxref GOC:dph to GO:0090040 * Added definition dbxref GOC:tb to GO:0090040 * Created link GO:0090040 -OBO_REL:is_a-> GO:0043193 * Created link GO:0090040 -OBO_REL:is_a-> GO:0090039 * Assigned namespace "biological_process" to GO:0090040 * [Changed name of GO:0090041 from "null" to "negative regulation of gene-specific transcription elongation from RNA polymerase II promoter", Set definition of GO:0090041 to "Any process that decreases the frequency, rate or extent of gene-specific RNA elongation, the extension of an RNA molecule from a specific gene or genes after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II.", Added definition dbxref GOC:dph to GO:0090041, Added definition dbxref GOC:tb to GO:0090041, Created link GO:0090041 -OBO_REL:is_a-> GO:0090039, Created link GO:0090041 -OBO_REL:is_a-> GO:0032582, Assigned namespace "biological_process" to GO:0090041] * Changed name of GO:0090041 from "null" to "negative regulation of gene-specific transcription elongation from RNA polymerase II promoter" * Set definition of GO:0090041 to "Any process that decreases the frequency, rate or extent of gene-specific RNA elongation, the extension of an RNA molecule from a specific gene or genes after transcription initiation by the addition of ribonucleotides, catalyzed by RNA polymerase II." * Added definition dbxref GOC:dph to GO:0090041 * Added definition dbxref GOC:tb to GO:0090041 * Created link GO:0090041 -OBO_REL:is_a-> GO:0090039 * Created link GO:0090041 -OBO_REL:is_a-> GO:0032582 * Assigned namespace "biological_process" to GO:0090041 * [Changed name of GO:0090042 from "null" to "tubulin deacetylation", Set definition of GO:0090042 to "The removal of an acetyl group from tubulin. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.", Added definition dbxref GOC:dph to GO:0090042, Added definition dbxref GOC:tb to GO:0090042, Created link GO:0090042 -OBO_REL:is_a-> GO:0006476, Assigned namespace "biological_process" to GO:0090042] * Changed name of GO:0090042 from "null" to "tubulin deacetylation" * Set definition of GO:0090042 to "The removal of an acetyl group from tubulin. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid." * Added definition dbxref GOC:dph to GO:0090042 * Added definition dbxref GOC:tb to GO:0090042 * Created link GO:0090042 -OBO_REL:is_a-> GO:0006476 * Assigned namespace "biological_process" to GO:0090042 * [Changed name of GO:0090043 from "null" to "regulation of tubulin deacetylation", Set definition of GO:0090043 to "Any process that modulates the frequency, rate or extent of tubulin deactylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid.", Added definition dbxref GOC:dph to GO:0090043, Added definition dbxref GOC:tb to GO:0090043, Created link GO:0090043 -regulates-> GO:0090042, Created link GO:0090043 -OBO_REL:is_a-> GO:0031399, Assigned namespace "biological_process" to GO:0090043] * Changed name of GO:0090043 from "null" to "regulation of tubulin deacetylation" * Set definition of GO:0090043 to "Any process that modulates the frequency, rate or extent of tubulin deactylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid." * Added definition dbxref GOC:dph to GO:0090043 * Added definition dbxref GOC:tb to GO:0090043 * Created link GO:0090043 -regulates-> GO:0090042 * Created link GO:0090043 -OBO_REL:is_a-> GO:0031399 * Assigned namespace "biological_process" to GO:0090043 * [Changed name of GO:0090044 from "null" to "positive regulation of tubulin deacetylation", Set definition of GO:0090044 to "Any process that increases the frequency, rate or extent of tubulin deactylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid.", Added definition dbxref GOC:dph to GO:0090044, Added definition dbxref GOC:tb to GO:0090044, Created link GO:0090044 -OBO_REL:is_a-> GO:0031401, Created link GO:0090044 -positively_regulates-> GO:0090042, Created link GO:0090044 -OBO_REL:is_a-> GO:0090043, Assigned namespace "biological_process" to GO:0090044] * Changed name of GO:0090044 from "null" to "positive regulation of tubulin deacetylation" * Set definition of GO:0090044 to "Any process that increases the frequency, rate or extent of tubulin deactylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid." * Added definition dbxref GOC:dph to GO:0090044 * Added definition dbxref GOC:tb to GO:0090044 * Created link GO:0090044 -OBO_REL:is_a-> GO:0031401 * Created link GO:0090044 -positively_regulates-> GO:0090042 * Created link GO:0090044 -OBO_REL:is_a-> GO:0090043 * Assigned namespace "biological_process" to GO:0090044 * [Changed name of GO:0090045 from "null" to "positive regulation of deacetylase activity", Set definition of GO:0090045 to "Any process that activates or increases the frequency, rate or extent of deacetylase activity, the catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule.", Added definition dbxref GOC:dph to GO:0090045, Added definition dbxref GOC:tb to GO:0090045, Created link GO:0090045 -OBO_REL:is_a-> GO:0051345, Created link GO:0090045 -positively_regulates-> GO:0051747, Assigned namespace "biological_process" to GO:0090045] * Changed name of GO:0090045 from "null" to "positive regulation of deacetylase activity" * Set definition of GO:0090045 to "Any process that activates or increases the frequency, rate or extent of deacetylase activity, the catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule." * Added definition dbxref GOC:dph to GO:0090045 * Added definition dbxref GOC:tb to GO:0090045 * Created link GO:0090045 -OBO_REL:is_a-> GO:0051345 * Created link GO:0090045 -positively_regulates-> GO:0051747 * Assigned namespace "biological_process" to GO:0090045 * Deleted GO:0007554 --OBO_REL:is_a--> GO:0050810 * Deleted GO:0007554 --OBO_REL:is_a--> GO:0046885 * Created link GO:0007554 -OBO_REL:is_a-> GO:0090030 * Deleted GO:0010422 --OBO_REL:is_a--> GO:0050810 * Created link GO:0010422 -OBO_REL:is_a-> GO:0090030 * Deleted GO:0010423 --OBO_REL:is_a--> GO:0010894 * Created link GO:0010423 -OBO_REL:is_a-> GO:0090032 * Deleted GO:0031946 --OBO_REL:is_a--> GO:0046885 * Deleted GO:0031946 --OBO_REL:is_a--> GO:0050810 * Created link GO:0031946 -OBO_REL:is_a-> GO:0090030 * Deleted GO:0031947 --OBO_REL:is_a--> GO:0032353 * Deleted GO:0031947 --OBO_REL:is_a--> GO:0010894 * Created link GO:0031947 -OBO_REL:is_a-> GO:0090032 * Deleted GO:0031948 --OBO_REL:is_a--> GO:0046886 * Deleted GO:0031948 --OBO_REL:is_a--> GO:0010893 * Created link GO:0031948 -OBO_REL:is_a-> GO:0090031 * Deleted GO:0032347 --OBO_REL:is_a--> GO:0046885 * Deleted GO:0032347 --OBO_REL:is_a--> GO:0050810 * Created link GO:0032347 -OBO_REL:is_a-> GO:0090030 * Deleted GO:0032348 --OBO_REL:is_a--> GO:0032353 * Deleted GO:0032348 --OBO_REL:is_a--> GO:0010894 * Created link GO:0032348 -OBO_REL:is_a-> GO:0090032 * Deleted GO:0032349 --OBO_REL:is_a--> GO:0046886 * Deleted GO:0032349 --OBO_REL:is_a--> GO:0010893 * Created link GO:0032349 -OBO_REL:is_a-> GO:0090031 * Deleted GO:0045997 --OBO_REL:is_a--> GO:0010894 * Deleted GO:0045997 --OBO_REL:is_a--> GO:0032353 * Created link GO:0045997 -OBO_REL:is_a-> GO:0090032 * Deleted GO:0045998 --OBO_REL:is_a--> GO:0046886 * Deleted GO:0045998 --OBO_REL:is_a--> GO:0010893 * Created link GO:0045998 -OBO_REL:is_a-> GO:0090031 From gocvs at genome.stanford.edu Tue Aug 4 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 4 Aug 2009 21:30:12 -0700 Subject: [Go-diff] GO update 08/04/2009 Message-ID: <200908050430.n754UCR0021145@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.726 by 1.729 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060787 * Created object of type obo:TERM with id GO:0060788 * Created object of type obo:TERM with id GO:0060789 * Created object of type obo:TERM with id GO:0060790 * Created object of type obo:TERM with id GO:0060791 * Created object of type obo:TERM with id GO:0060792 * Created object of type obo:TERM with id GO:0060793 * Created object of type obo:TERM with id GO:0060794 * Created object of type obo:TERM with id GO:0060795 * Created object of type obo:TERM with id GO:0060796 * Created object of type obo:TERM with id GO:0060797 * Created object of type obo:TERM with id GO:0070847 * Created object of type obo:TERM with id GO:0070848 * Created object of type obo:TERM with id GO:0070849 * [Changed name of GO:0060787 from "null" to "positive regulation of posterior neural plate formation by fibroblast growth factor receptor signaling pathway", Set definition of GO:0060787 to "Any process that increases the rate or extent of the formation of the posterior neural plate, the posterior end of the flat, thickened layer of ectodermal cells known as the neural plate.", Added definition dbxref GOC:dph to GO:0060787, Added definition dbxref GOC:sdb_2009 to GO:0060787, Added definition dbxref GOC:tb to GO:0060787, Created link GO:0060787 -OBO_REL:is_a-> GO:0008543, Created link GO:0060787 -positively_regulates-> GO:0090018, Assigned namespace "biological_process" to GO:0060787] * Changed name of GO:0060787 from "null" to "positive regulation of posterior neural plate formation by fibroblast growth factor receptor signaling pathway" * Set definition of GO:0060787 to "Any process that increases the rate or extent of the formation of the posterior neural plate, the posterior end of the flat, thickened layer of ectodermal cells known as the neural plate." * Added definition dbxref GOC:dph to GO:0060787 * Added definition dbxref GOC:sdb_2009 to GO:0060787 * Added definition dbxref GOC:tb to GO:0060787 * Created link GO:0060787 -OBO_REL:is_a-> GO:0008543 * Created link GO:0060787 -positively_regulates-> GO:0090018 * Assigned namespace "biological_process" to GO:0060787 * [Changed name of GO:0060788 from "null" to "ectodermal placode formation", Set definition of GO:0060788 to "The developmental process by which an ectodermal placode forms. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.", Added definition dbxref GOC:dph to GO:0060788, Added definition dbxref GOC:sdb_2009 to GO:0060788, Added definition dbxref GOC:tb to GO:0060788, Created link GO:0060788 -OBO_REL:is_a-> GO:0048646, Assigned namespace "biological_process" to GO:0060788] * Changed name of GO:0060788 from "null" to "ectodermal placode formation" * Set definition of GO:0060788 to "The developmental process by which an ectodermal placode forms. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm." * Added definition dbxref GOC:dph to GO:0060788 * Added definition dbxref GOC:sdb_2009 to GO:0060788 * Added definition dbxref GOC:tb to GO:0060788 * Created link GO:0060788 -OBO_REL:is_a-> GO:0048646 * Assigned namespace "biological_process" to GO:0060788 * [Changed name of GO:0060789 from "null" to "hair follicle placode formation", Set definition of GO:0060789 to "The developmental process by which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud.", Added definition dbxref GOC:dph to GO:0060789, Added definition dbxref GOC:sdb_2009 to GO:0060789, Added definition dbxref GOC:tb to GO:0060789, Created link GO:0060789 -OBO_REL:is_a-> GO:0060788, Created link GO:0060789 -part_of-> GO:0001942, Assigned namespace "biological_process" to GO:0060789] * Changed name of GO:0060789 from "null" to "hair follicle placode formation" * Set definition of GO:0060789 to "The developmental process by which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud." * Added definition dbxref GOC:dph to GO:0060789 * Added definition dbxref GOC:sdb_2009 to GO:0060789 * Added definition dbxref GOC:tb to GO:0060789 * Created link GO:0060789 -OBO_REL:is_a-> GO:0060788 * Created link GO:0060789 -part_of-> GO:0001942 * Assigned namespace "biological_process" to GO:0060789 * [Changed name of GO:0060790 from "null" to "tooth placode formation", Set definition of GO:0060790 to "The developmental process by which the tooth placode forms. An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud.", Added definition dbxref GOC:dph to GO:0060790, Added definition dbxref GOC:sdb_2009 to GO:0060790, Added definition dbxref GOC:tb to GO:0060790, Created link GO:0060790 -part_of-> GO:0042475, Created link GO:0060790 -OBO_REL:is_a-> GO:0060788, Assigned namespace "biological_process" to GO:0060790] * Changed name of GO:0060790 from "null" to "tooth placode formation" * Set definition of GO:0060790 to "The developmental process by which the tooth placode forms. An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud." * Added definition dbxref GOC:dph to GO:0060790 * Added definition dbxref GOC:sdb_2009 to GO:0060790 * Added definition dbxref GOC:tb to GO:0060790 * Created link GO:0060790 -part_of-> GO:0042475 * Created link GO:0060790 -OBO_REL:is_a-> GO:0060788 * Assigned namespace "biological_process" to GO:0060790 * [Changed name of GO:0060791 from "null" to "sebaceous gland placode formation", Set definition of GO:0060791 to "The developmental process by which a sebaceous gland placode forms. A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud.", Added definition dbxref GOC:dph to GO:0060791, Added definition dbxref GOC:sdb_2009 to GO:0060791, Added definition dbxref GOC:tb to GO:0060791, Created link GO:0060791 -part_of-> GO:0048733, Created link GO:0060791 -OBO_REL:is_a-> GO:0060788, Assigned namespace "biological_process" to GO:0060791] * Changed name of GO:0060791 from "null" to "sebaceous gland placode formation" * Set definition of GO:0060791 to "The developmental process by which a sebaceous gland placode forms. A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud." * Added definition dbxref GOC:dph to GO:0060791 * Added definition dbxref GOC:sdb_2009 to GO:0060791 * Added definition dbxref GOC:tb to GO:0060791 * Created link GO:0060791 -part_of-> GO:0048733 * Created link GO:0060791 -OBO_REL:is_a-> GO:0060788 * Assigned namespace "biological_process" to GO:0060791 * [Changed name of GO:0060792 from "null" to "sweat gland development", Set definition of GO:0060792 to "The progression of the sweat gland over time, from its formation to the mature structure. Sweat glands secrete an aqueous solution that is used in thermoregulation.", Added definition dbxref GOC:dph to GO:0060792, Added definition dbxref GOC:sdb_2009 to GO:0060792, Added definition dbxref GOC:tb to GO:0060792, Created link GO:0060792 -OBO_REL:is_a-> GO:0048732, Assigned namespace "biological_process" to GO:0060792] * Changed name of GO:0060792 from "null" to "sweat gland development" * Set definition of GO:0060792 to "The progression of the sweat gland over time, from its formation to the mature structure. Sweat glands secrete an aqueous solution that is used in thermoregulation." * Added definition dbxref GOC:dph to GO:0060792 * Added definition dbxref GOC:sdb_2009 to GO:0060792 * Added definition dbxref GOC:tb to GO:0060792 * Created link GO:0060792 -OBO_REL:is_a-> GO:0048732 * Assigned namespace "biological_process" to GO:0060792 * [Changed name of GO:0060793 from "null" to "sweat gland placode formation", Set definition of GO:0060793 to "The developmental process by which the sweat gland placode forms. An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud.", Added definition dbxref GOC:dph to GO:0060793, Added definition dbxref GOC:sdb_2009 to GO:0060793, Added definition dbxref GOC:tb to GO:0060793, Created link GO:0060793 -OBO_REL:is_a-> GO:0060788, Created link GO:0060793 -part_of-> GO:0060792, Assigned namespace "biological_process" to GO:0060793] * Changed name of GO:0060793 from "null" to "sweat gland placode formation" * Set definition of GO:0060793 to "The developmental process by which the sweat gland placode forms. An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud." * Added definition dbxref GOC:dph to GO:0060793 * Added definition dbxref GOC:sdb_2009 to GO:0060793 * Added definition dbxref GOC:tb to GO:0060793 * Created link GO:0060793 -OBO_REL:is_a-> GO:0060788 * Created link GO:0060793 -part_of-> GO:0060792 * Assigned namespace "biological_process" to GO:0060793 * [Changed name of GO:0060794 from "null" to "leaflet morphogenesis", Set definition of GO:0060794 to "The process by which the anatomical structures of the leaflet are generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:dph to GO:0060794, Added definition dbxref GOC:sdb_2009 to GO:0060794, Added definition dbxref GOC:tb to GO:0060794, Created link GO:0060794 -OBO_REL:is_a-> GO:0009653, Created link GO:0060794 -part_of-> GO:0060777, Assigned namespace "biological_process" to GO:0060794] * Changed name of GO:0060794 from "null" to "leaflet morphogenesis" * Set definition of GO:0060794 to "The process by which the anatomical structures of the leaflet are generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:dph to GO:0060794 * Added definition dbxref GOC:sdb_2009 to GO:0060794 * Added definition dbxref GOC:tb to GO:0060794 * Created link GO:0060794 -OBO_REL:is_a-> GO:0009653 * Created link GO:0060794 -part_of-> GO:0060777 * Assigned namespace "biological_process" to GO:0060794 * [Changed name of GO:0060795 from "null" to "cell fate commitment involved in the formation of primary germ layers", Set definition of GO:0060795 to "The commitment of cells to specific cell fates of the endoderm, ectoderm and mesoderm as a part of gastrulation.", Added definition dbxref GOC:dph to GO:0060795, Added definition dbxref GOC:sdb_2009 to GO:0060795, Added definition dbxref GOC:tb to GO:0060795, Created link GO:0060795 -OBO_REL:is_a-> GO:0045165, Created link GO:0060795 -part_of-> GO:0001704, Assigned namespace "biological_process" to GO:0060795] * Changed name of GO:0060795 from "null" to "cell fate commitment involved in the formation of primary germ layers" * Set definition of GO:0060795 to "The commitment of cells to specific cell fates of the endoderm, ectoderm and mesoderm as a part of gastrulation." * Added definition dbxref GOC:dph to GO:0060795 * Added definition dbxref GOC:sdb_2009 to GO:0060795 * Added definition dbxref GOC:tb to GO:0060795 * Created link GO:0060795 -OBO_REL:is_a-> GO:0045165 * Created link GO:0060795 -part_of-> GO:0001704 * Assigned namespace "biological_process" to GO:0060795 * [Changed name of GO:0060796 from "null" to "regulation of transcription involved in primary germ layer cell fate commitment", Set definition of GO:0060796 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results in cells adopting an endoderm, ectoderm or mesoderm cell fate.", Added definition dbxref GOC:dph to GO:0060796, Added definition dbxref GOC:sdb_2009 to GO:0060796, Added definition dbxref GOC:tb to GO:0060796, Created link GO:0060796 -OBO_REL:is_a-> GO:0006357, Created link GO:0060796 -part_of-> GO:0060795, Assigned namespace "biological_process" to GO:0060796] * Changed name of GO:0060796 from "null" to "regulation of transcription involved in primary germ layer cell fate commitment" * Set definition of GO:0060796 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results in cells adopting an endoderm, ectoderm or mesoderm cell fate." * Added definition dbxref GOC:dph to GO:0060796 * Added definition dbxref GOC:sdb_2009 to GO:0060796 * Added definition dbxref GOC:tb to GO:0060796 * Created link GO:0060796 -OBO_REL:is_a-> GO:0006357 * Created link GO:0060796 -part_of-> GO:0060795 * Assigned namespace "biological_process" to GO:0060796 * [Changed name of GO:0060797 from "null" to "transforming growth factor beta receptor signaling pathway involved in primary germ layer cell fate commitment", Set definition of GO:0060797 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the commitment of an unspecified fate to adopt a mesoderm fate.", Added definition dbxref GOC:dph to GO:0060797, Added definition dbxref GOC:sdb_2009 to GO:0060797, Added definition dbxref GOC:tb to GO:0060797, Created link GO:0060797 -part_of-> GO:0060795, Created link GO:0060797 -OBO_REL:is_a-> GO:0007179, Assigned namespace "biological_process" to GO:0060797] * Changed name of GO:0060797 from "null" to "transforming growth factor beta receptor signaling pathway involved in primary germ layer cell fate commitment" * Set definition of GO:0060797 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the commitment of an unspecified fate to adopt a mesoderm fate." * Added definition dbxref GOC:dph to GO:0060797 * Added definition dbxref GOC:sdb_2009 to GO:0060797 * Added definition dbxref GOC:tb to GO:0060797 * Created link GO:0060797 -part_of-> GO:0060795 * Created link GO:0060797 -OBO_REL:is_a-> GO:0007179 * Assigned namespace "biological_process" to GO:0060797 * [Changed name of GO:0070847 from "null" to "core mediator complex", Set definition of GO:0070847 to "A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The core mediator complex has a stimulatory effect on basal transcription, and contains most of the same subdomains as the larger form of mediator complex -- a head domain comprising proteins known in Saccharomyces as Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; and a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p -- but lacks the regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan core mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.", Added definition dbxref PMID:11454195 to GO:0070847, Added definition dbxref PMID:16168358 to GO:0070847, Added definition dbxref PMID:17870225 to GO:0070847, Added synonym "C mediator complex" to GO:0070847, Added general dbxref PMID:17870225 to synonym C mediator complex of GO:0070847, Changed synonym scope of GO:0070847 from "Related" to "Exact", Added synonym "S mediator complex" to GO:0070847, Added general dbxref PMID:17043218 to synonym S mediator complex of GO:0070847, Changed synonym scope of GO:0070847 from "Related" to "Exact", Created link GO:0070847 -OBO_REL:is_a-> GO:0043234, Created link GO:0070847 -OBO_REL:is_a-> GO:0044451, Created link GO:0070847 -part_of-> GO:0016591, Assigned namespace "cellular_component" to GO:0070847] * Changed name of GO:0070847 from "null" to "core mediator complex" * Set definition of GO:0070847 to "A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The core mediator complex has a stimulatory effect on basal transcription, and contains most of the same subdomains as the larger form of mediator complex -- a head domain comprising proteins known in Saccharomyces as Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; and a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p -- but lacks the regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan core mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins." * Added definition dbxref PMID:11454195 to GO:0070847 * Added definition dbxref PMID:16168358 to GO:0070847 * Added definition dbxref PMID:17870225 to GO:0070847 * Added synonym "C mediator complex" to GO:0070847 * Added general dbxref PMID:17870225 to synonym C mediator complex of GO:0070847 * Changed synonym scope of GO:0070847 from "Related" to "Exact" * Added synonym "S mediator complex" to GO:0070847 * Added general dbxref PMID:17043218 to synonym S mediator complex of GO:0070847 * Changed synonym scope of GO:0070847 from "Related" to "Exact" * Created link GO:0070847 -OBO_REL:is_a-> GO:0043234 * Created link GO:0070847 -OBO_REL:is_a-> GO:0044451 * Created link GO:0070847 -part_of-> GO:0016591 * Assigned namespace "cellular_component" to GO:0070847 * [Changed name of GO:0070848 from "null" to "response to growth factor stimulus", Set definition of GO:0070848 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.", Added definition dbxref GOC:mah to GO:0070848, Created link GO:0070848 -OBO_REL:is_a-> GO:0042221, Assigned namespace "biological_process" to GO:0070848] * Changed name of GO:0070848 from "null" to "response to growth factor stimulus" * Set definition of GO:0070848 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus." * Added definition dbxref GOC:mah to GO:0070848 * Created link GO:0070848 -OBO_REL:is_a-> GO:0042221 * Assigned namespace "biological_process" to GO:0070848 * [Changed name of GO:0070849 from "null" to "response to epidermal growth factor stimulus", Set definition of GO:0070849 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epidermal growth factor stimulus.", Added definition dbxref GOC:mah to GO:0070849, Added synonym "response to EGF stimulus" to GO:0070849, Added general dbxref GOC:mah to synonym response to EGF stimulus of GO:0070849, Changed synonym scope of GO:0070849 from "Related" to "Exact", Created link GO:0070849 -OBO_REL:is_a-> GO:0070848, Created link GO:0070849 -OBO_REL:is_a-> GO:0009719, Assigned namespace "biological_process" to GO:0070849] * Changed name of GO:0070849 from "null" to "response to epidermal growth factor stimulus" * Set definition of GO:0070849 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epidermal growth factor stimulus." * Added definition dbxref GOC:mah to GO:0070849 * Added synonym "response to EGF stimulus" to GO:0070849 * Added general dbxref GOC:mah to synonym response to EGF stimulus of GO:0070849 * Changed synonym scope of GO:0070849 from "Related" to "Exact" * Created link GO:0070849 -OBO_REL:is_a-> GO:0070848 * Created link GO:0070849 -OBO_REL:is_a-> GO:0009719 * Assigned namespace "biological_process" to GO:0070849 * Destroyed object GO:0000119 * Deleted GO:0001710 --OBO_REL:is_a--> GO:0045165 * Created link GO:0001710 -OBO_REL:is_a-> GO:0060795 * Deleted GO:0001711 --OBO_REL:is_a--> GO:0045165 * Created link GO:0001711 -OBO_REL:is_a-> GO:0060795 * Created link GO:0001711 -part_of-> GO:0001706 * Deleted GO:0001712 --OBO_REL:is_a--> GO:0045165 * Created link GO:0001712 -part_of-> GO:0001705 * Created link GO:0001712 -OBO_REL:is_a-> GO:0060795 * Deleted GO:0001743 --OBO_REL:is_a--> GO:0048646 * Created link GO:0001743 -OBO_REL:is_a-> GO:0060788 * Deleted GO:0007493 --part_of--> GO:0001706 * Changed comment from "Note that this term is intended to annotate gene products that are attached to the plasma membrane or cell wall." to "Note that this term is intended to annotate gene products that are attached (integrated or loosely bound) to the plasma membrane or cell wall." * Changed name of GO:0016592 from "Srb-mediator complex" to "mediator complex" * added secondary id GO:0000119 to GO:0016592 * Changed definition of GO:0016592 from "A multiprotein transcriptional mediator complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and is essential for transcription of most protein-coding genes. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Mammalian Srb-mediator complexes include homologs of yeast Srb and Med proteins." to "A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins." * Deleted definition dbxref PMID:9396788 from GO:0016592 * Added definition dbxref PMID:11454195 to GO:0016592 * Added definition dbxref PMID:17870225 to GO:0016592 * Added general dbxref Wikipedia:Mediator_(coactivator) to GO:0016592 * Changed synonym scope of GO:0016592 from "Exact" to "Related" * Added synonym "Srb-mediator complex" to GO:0016592 * Added general dbxref GOC:mah to synonym Srb-mediator complex of GO:0016592 * Changed synonym scope of GO:0016592 from "Related" to "Exact" * Added synonym "TRAP complex" to GO:0016592 * Changed synonym scope of GO:0016592 from "Related" to "Narrow" * Created link GO:0016592 -has_part-> GO:0070847 * Changed definition of GO:0030313 from "Everything external to, but not including, the cytoplasmic membrane of bacteria, encompassing the periplasmic space, cell wall, and outer membrane if present." to "An envelope that surounds a bacterial cell and includes the cytoplasmic membrane and everything external, encompassing the periplasmic space, cell wall, and outer membrane if present." * Deleted definition dbxref GOC:jl from GO:0030313 * Added definition dbxref GOC:ds to GO:0030313 * Added definition dbxref GOC:mlg to GO:0030313 * Deleted GO:0030313 --OBO_REL:is_a--> GO:0030312 * Created link GO:0030313 -has_part-> GO:0005886 * Deleted GO:0030910 --OBO_REL:is_a--> GO:0048646 * Created link GO:0030910 -OBO_REL:is_a-> GO:0060788 * Deleted GO:0043049 --OBO_REL:is_a--> GO:0048646 * Created link GO:0043049 -OBO_REL:is_a-> GO:0060788 * Deleted GO:0060596 --OBO_REL:is_a--> GO:0048646 * Created link GO:0060596 -OBO_REL:is_a-> GO:0060788 * Deleted GO:0060778 --part_of--> GO:0060777 * Deleted GO:0060778 --OBO_REL:is_a--> GO:0009653 * Created link GO:0060778 -OBO_REL:is_a-> GO:0060794 * Deleted GO:0060779 --OBO_REL:is_a--> GO:0009653 * Deleted GO:0060779 --part_of--> GO:0060777 * Created link GO:0060779 -OBO_REL:is_a-> GO:0060794 * Deleted GO:0060780 --OBO_REL:is_a--> GO:0009653 * Deleted GO:0060780 --part_of--> GO:0060777 * Created link GO:0060780 -OBO_REL:is_a-> GO:0060794 * Changed name of GO:0080078 from "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferaseactivity" to "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" * Deleted GO:0090014 --part_of--> GO:0060777 * Created link GO:0090014 -part_of-> GO:0060794 * Changed definition of GO:0090029 from "Any process that decreases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion" to "Any process that decreases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion." * Changed definition of GO:0090036 from "Any process that modulates the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." to "Any process that modulates the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." * Changed definition of GO:0090037 from "Any process that increases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." to "Any process that increases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." * Changed definition of GO:0090038 from "Any process that decreases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." to "Any process that decreases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound." From gocvs at genome.stanford.edu Wed Aug 5 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 5 Aug 2009 21:30:12 -0700 Subject: [Go-diff] GO update 08/05/2009 Message-ID: <200908060430.n764UCnl015101@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.729 by 1.731 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070850 * [Changed name of GO:0070850 from "null" to "TACC/TOG complex", Set definition of GO:0070850 to "A protein complex that contains the transforming acidic coiled coil (TACC) protein and the TOG protein (Mia1p/Alp7p and Alp14, respectively, in fission yeast), and is involved in microtubule array remodeling as cells progress through the cell cycle. The TACC/TOG complex is conserved in eukaryotes, and shuttles between the nucleus and the cytoplasm during interphase.", Added definition dbxref GOC:mah to GO:0070850, Added definition dbxref GOC:vw to GO:0070850, Added definition dbxref PMID:19606211 to GO:0070850, Created link GO:0070850 -OBO_REL:is_a-> GO:0044424, Created link GO:0070850 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0070850] * Changed name of GO:0070850 from "null" to "TACC/TOG complex" * Set definition of GO:0070850 to "A protein complex that contains the transforming acidic coiled coil (TACC) protein and the TOG protein (Mia1p/Alp7p and Alp14, respectively, in fission yeast), and is involved in microtubule array remodeling as cells progress through the cell cycle. The TACC/TOG complex is conserved in eukaryotes, and shuttles between the nucleus and the cytoplasm during interphase." * Added definition dbxref GOC:mah to GO:0070850 * Added definition dbxref GOC:vw to GO:0070850 * Added definition dbxref PMID:19606211 to GO:0070850 * Created link GO:0070850 -OBO_REL:is_a-> GO:0044424 * Created link GO:0070850 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0070850 * Deleted GO:0002237 --OBO_REL:is_a--> GO:0042221 * Created link GO:0002237 -OBO_REL:is_a-> GO:0010033 * Deleted GO:0002238 --OBO_REL:is_a--> GO:0042221 * Created link GO:0002238 -OBO_REL:is_a-> GO:0010033 * Deleted GO:0006777 --OBO_REL:is_a--> GO:0042559 * Changed definition of GO:0009276 from "The peptidoglycan layer of the Gram-negative cell envelope. In Gram-negative cells the peptidoglycan is relatively thin (1-2nm) and is linked to the outer membrane by lipoproteins. In Gram-negative cells the peptidoglycan is too thin to retain the primary stain in the Gram staining procedure and therefore cells appear red after Gram stain. As in but not restricted to the Gram-negative bacteria." to "The peptidoglycan layer of the Gram-negative cell envelope. In Gram-negative cells the peptidoglycan is relatively thin (1-2nm) and is linked to the outer membrane by lipoproteins. In Gram-negative cells the peptidoglycan is too thin to retain the primary stain in the Gram staining procedure and therefore cells appear red after Gram stain." * Deleted synonym "cell wall (sensu Gram-negative Bacteria)" from GO:0009276 * Deleted synonym "cell wall (sensu Proteobacteria)" from GO:0009276 * Deleted synonym "cell wall (sensu Fungi)" from GO:0009277 * Deleted synonym "outer membrane (sensu Gram-negative Bacteria)" from GO:0009279 * Deleted synonym "outer membrane (sensu Proteobacteria)" from GO:0009279 * Deleted synonym "flagellum (sensu Bacteria)" from GO:0009288 * Changed definition of GO:0009291 from "The process of unidirectional (polarized) transfer of genetic information involving direct cellular contact between a donor and recipient cell; the contact is followed by the formation of a cellular bridge that physically connects the cells; some or all of the chromosome(s) of one cell ('male') is then transferred into the other cell ('female'); unidirectional conjugation occurs between cells of different mating types." to "The process of unidirectional (polarized) transfer of genetic information involving direct cellular contact between a donor and recipient cell; the contact is followed by the formation of a cellular bridge that physically connects the cells; some or all of the chromosome(s) of one cell ('male') is then transferred into the other cell ('female'); unidirectional conjugation occurs between cells of different mating types. Examples of this process are found in Prokaryotes." * Deleted synonym "conjugation (sensu Bacteria)" from GO:0009291 * Deleted synonym "mating (sensu Bacteria)" from GO:0009291 * Added synonym "mating" to GO:0009291 * Changed synonym scope of GO:0009291 from "Related" to "Broad" * Changed definition of GO:0009353 from "A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2) within the mitochondrial matrix." to "A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2) within the mitochondrial matrix. An example of this complex is found in Mus musculus." * Deleted synonym "oxoglutarate dehydrogenase complex (sensu Eukaryota)" from GO:0009353 * Changed name of GO:0009420 from "flagellin-based flagellum filament" to "bacterial-type flagellum filament" * Changed definition of GO:0009420 from "The long (approximately 20 nm), thin external structure of the flagellum, which acts as a propeller." to "The long (approximately 20 nm), thin external structure of the flagellum, which acts as a propeller. Examples of this component are found in bacteria." * Deleted synonym "flagellar filament (sensu Bacteria)" from GO:0009420 * Added synonym "flagellin-based flagellum filament" to GO:0009420 * Changed synonym scope of GO:0009420 from "Related" to "Exact" * Changed name of GO:0009421 from "flagellin-based flagellum filament cap" to "bacterial-type flagellum filament cap" * Changed definition of GO:0009421 from "The proteinaceous structure at the distal tip of the flagellar filament." to "The proteinaceous structure at the distal tip of the flagellar filament. Examples of this component are found in bacteria." * Deleted synonym "flagellar filament cap (sensu Bacteria)" from GO:0009421 * Added synonym "flagellin-based flagellum filament cap" to GO:0009421 * Changed synonym scope of GO:0009421 from "Related" to "Exact" * Changed name of GO:0009422 from "flagellin-based flagellum hook-filament junction" to "bacterial-type flagellum hook-filament junction" * Changed definition of GO:0009422 from "The region of the flagellum where the hook and filament meet." to "The region of the flagellum where the hook and filament meet. Examples of this component are found in bacteria." * Deleted synonym "flagellar hook-filament junction (sensu Bacteria)" from GO:0009422 * Changed name of GO:0009424 from "flagellin-based flagellum hook" to "bacterial-type flagellum hook" * Changed definition of GO:0009424 from "The portion of the flagellum that connects the filament to the basal body." to "The portion of the flagellum that connects the filament to the basal body. Examples of this component are found in bacteria." * Deleted synonym "flagellar hook (sensu Bacteria)" from GO:0009424 * Added synonym "flagellin-based flagellum hook" to GO:0009424 * Changed synonym scope of GO:0009424 from "Related" to "Exact" * Changed name of GO:0009425 from "flagellin-based flagellum basal body" to "bacterial-type flagellum basal body" * Changed definition of GO:0009425 from "One of the three major substructures of the flagellin-based flagellum; a structure consisting of a rod, a series of rings, the Mot proteins, the switch complex and the flagellum-specific export apparatus. The rings anchor the flagellum to the cytoplasmic membrane (MS ring), the peptidoglycan (P ring) and the outer membrane (L ring)." to "One of the three major substructures of the flagellin-based flagellum; a structure consisting of a rod, a series of rings, the Mot proteins, the switch complex and the flagellum-specific export apparatus. The rings anchor the flagellum to the cytoplasmic membrane (MS ring), the peptidoglycan (P ring) and the outer membrane (L ring). Examples of this component are found in bacteria." * Deleted synonym "flagellar basal body (sensu Bacteria)" from GO:0009425 * Added synonym "flagellar basal body" to GO:0009425 * Changed synonym scope of GO:0009425 from "Related" to "Broad" * Added synonym "flagellin-based flagellum basal body" to GO:0009425 * Changed synonym scope of GO:0009425 from "Related" to "Exact" * Changed name of GO:0009426 from "flagellin-based flagellum basal body, distal rod" to "bacterial-type flagellum basal body, distal rod" * Changed definition of GO:0009426 from "The portion of the central rod of the flagellar basal body that is distal to the cell membrane; spans most of the distance between the inner and outer membranes." to "The portion of the central rod of the flagellar basal body that is distal to the cell membrane; spans most of the distance between the inner and outer membranes. Examples of this component are found in bacteria." * Deleted synonym "flagellar basal body, distal rod (sensu Bacteria)" from GO:0009426 * Added synonym "flagellin-based flagellum basal body, distal rod" to GO:0009426 * Changed synonym scope of GO:0009426 from "Related" to "Exact" * Changed name of GO:0009427 from "flagellin-based flagellum basal body, distal rod, L ring" to "bacterial-type flagellum basal body, distal rod, L ring" * Changed definition of GO:0009427 from "One of the rings of the flagellar basal body; anchors the basal body to the outer membrane." to "One of the rings of the flagellar basal body; anchors the basal body to the outer membrane. Examples of this component are found in bacteria." * Deleted synonym "flagellar basal body, distal rod, L ring (sensu Bacteria)" from GO:0009427 * Added synonym "flagellin-based flagellum basal body, distal rod, L ring" to GO:0009427 * Changed synonym scope of GO:0009427 from "Related" to "Exact" * Changed name of GO:0009428 from "flagellin-based flagellum basal body, distal rod, P ring" to "bacterial-type flagellum basal body, distal rod, P ring" * Changed definition of GO:0009428 from "One of the rings of the flagellar basal body; anchors the basal body to the peptidoglycan layer." to "One of the rings of the flagellar basal body; anchors the basal body to the peptidoglycan layer. Examples of this component are found in bacteria." * Deleted synonym "flagellar basal body, distal rod, P ring (sensu Bacteria)" from GO:0009428 * Added synonym "flagellin-based flagellum basal body, distal rod, P ring" to GO:0009428 * Changed synonym scope of GO:0009428 from "Related" to "Exact" * Changed name of GO:0009429 from "flagellin-based flagellum basal body, proximal rod" to "bacterial-type flagellum basal body, proximal rod" * Changed definition of GO:0009429 from "The portion of the central rod of the flagellar basal body that is proximal to the cell membrane; proximal rod connects the distal rod to the flagellar motor." to "The portion of the central rod of the flagellar basal body that is proximal to the cell membrane; proximal rod connects the distal rod to the flagellar motor. Examples of this component are found in bacteria." * Deleted synonym "flagellar basal body, proximal rod (sensu Bacteria)" from GO:0009429 * Added synonym "flagellin-based flagellum basal body, proximal rod" to GO:0009429 * Changed synonym scope of GO:0009429 from "Related" to "Exact" * Changed name of GO:0009431 from "flagellin-based flagellum basal body, MS ring" to "bacterial-type flagellum basal body, MS ring" * Changed definition of GO:0009431 from "One of the rings of the flagellar basal body; a double-flanged ring that anchors the basal body to the cytoplasmic membrane." to "One of the rings of the flagellar basal body; a double-flanged ring that anchors the basal body to the cytoplasmic membrane. Examples of this component are found in bacteria." * Deleted synonym "flagellar basal body, mounting plate (sensu Bacteria)" from GO:0009431 * Deleted synonym "flagellar basal body, MS ring (sensu Bacteria)" from GO:0009431 * Added synonym "flagellar basal body, mounting plate" to GO:0009431 * Changed synonym scope of GO:0009431 from "Related" to "Broad" * Added synonym "flagellin-based flagellum basal body, MS ring" to GO:0009431 * Changed synonym scope of GO:0009431 from "Related" to "Exact" * Changed name of GO:0009433 from "flagellin-based flagellum basal body, C ring" to "bacterial-type flagellum basal body, C ring" * Changed definition of GO:0009433 from "Cytoplasmic ring located at the base of the flagellar basal body; acts as a rotor; includes three switch proteins, which generate torque and can change their conformational state in a bimodal fashion, so that the motor direction can switch between clockwise and counterclockwise." to "Cytoplasmic ring located at the base of the flagellar basal body; acts as a rotor; includes three switch proteins, which generate torque and can change their conformational state in a bimodal fashion, so that the motor direction can switch between clockwise and counterclockwise. Examples of this component are found in bacteria." * Deleted synonym "flagellar basal body, C ring (sensu Bacteria)" from GO:0009433 * Added synonym "flagellin-based flagellum basal body, C ring" to GO:0009433 * Changed synonym scope of GO:0009433 from "Related" to "Exact" * Deleted synonym "flagellum (sensu Eukaryota)" from GO:0009434 * Changed definition of GO:0009503 from "A thylakoid membrane complex of chlorophylls a and b together with chlorophyll a-b binding proteins. In addition, LHCs contain a number of other proteins, the function of which is speculative, together with accessory pigments. The LHCs capture and transfer energy to photosystems I and II." to "A thylakoid membrane complex of chlorophylls a and b together with chlorophyll a-b binding proteins. In addition, LHCs contain a number of other proteins, the function of which is speculative, together with accessory pigments. The LHCs capture and transfer energy to photosystems I and II. An example of this is found in Arabidopsis thaliana." * Deleted synonym "light-harvesting complex (sensu Viridiplantae)" from GO:0009503 * Deleted synonym "cell wall (sensu Magnoliophyta)" from GO:0009505 * Changed definition of GO:0009521 from "A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers." to "A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species." * Deleted synonym "reaction center (sensu Gram-negative Bacteria)" from GO:0009521 * Deleted synonym "reaction center (sensu Proteobacteria)" from GO:0009521 * Deleted synonym "reaction centre (sensu Gram-negative Bacteria)" from GO:0009521 * Deleted synonym "reaction centre (sensu Proteobacteria)" from GO:0009521 * Added synonym "reaction center" to GO:0009521 * Changed synonym scope of GO:0009521 from "Related" to "Narrow" * Added synonym "reaction centre" to GO:0009521 * Changed synonym scope of GO:0009521 from "Related" to "Narrow" * Changed definition of GO:0009534 from "Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana." to "Sac-like membranous structures (cisternae) in a chloroplast combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "thylakoid (sensu Viridiplantae)" from GO:0009534 * Changed definition of GO:0009535 from "The pigmented membrane of a chloroplast thylakoid." to "The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "thylakoid membrane (sensu Viridiplantae)" from GO:0009535 * Changed definition of GO:0009543 from "The cavity enclosed within the chloroplast thylakoid membrane." to "The cavity enclosed within the chloroplast thylakoid membrane. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "thylakoid lumen (sensu Viridiplantae)" from GO:0009543 * Changed definition of GO:0009558 from "The process by which the eight-nucleate single celled female gametophyte develops into the seven-celled female gametophyte. This mature structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center." to "The process by which the eight-nucleate single celled female gametophyte develops into the seven-celled female gametophyte. This mature structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "cellularization (sensu Magnoliophyta)" from GO:0009558 * Added synonym "cellularization" to GO:0009558 * Changed synonym scope of GO:0009558 from "Related" to "Broad" * Changed definition of GO:0009560 from "The process whereby an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell." to "The process whereby an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "female gamete generation (sensu Magnoliophyta)" from GO:0009560 * Added synonym "female gamete generation" to GO:0009560 * Changed synonym scope of GO:0009560 from "Related" to "Broad" * Changed definition of GO:0009567 from "Fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the two polar nuclei to form the 3n primary endosperm nucleus and then develops into the endosperm. The ploidy level of the 2n zygote and 3n primary endosperm nucleus is determined by the ploidy level of the parents involved." to "Fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the two polar nuclei to form the 3n primary endosperm nucleus and then develops into the endosperm. The ploidy level of the 2n zygote and 3n primary endosperm nucleus is determined by the ploidy level of the parents involved. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "double fertilization (sensu Magnoliophyta)" from GO:0009567 * Added synonym "double fertilization" to GO:0009567 * Changed synonym scope of GO:0009567 from "Related" to "Exact" * Changed definition of GO:0009573 from "A complex, located in the chloroplast, containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate." to "A complex, located in the chloroplast, containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)" from GO:0009573 * Deleted synonym "RubisCO complex (sensu Magnoliophyta)" from GO:0009573 * Added synonym "RubisCO complex" to GO:0009573 * Changed synonym scope of GO:0009573 from "Related" to "Exact" * Changed definition of GO:0009664 from "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cellulose and pectin-containing cell wall." to "A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "cell wall organisation (sensu Magnoliophyta)" from GO:0009664 * Deleted synonym "cell wall organization and biogenesis (sensu Magnoliophyta)" from GO:0009664 * Added synonym "cell wall organization and biogenesis" to GO:0009664 * Changed synonym scope of GO:0009664 from "Related" to "Narrow" * Changed definition of GO:0009677 from "Rudimentary double fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the ventral canal cell nucleus to form a second zygote, which soon degenerates." to "Rudimentary double fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the ventral canal cell nucleus to form a second zygote, which soon degenerates. An example of this process is found in the Gnetophytes, such as Welwitschia mirabilis." * Deleted synonym "double fertilization (sensu Gnetophyta)" from GO:0009677 * Changed definition of GO:0009705 from "The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell." to "The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana." * Deleted synonym "vacuolar membrane (sensu Magnoliophyta)" from GO:0009705 * Added synonym "vacuolar membrane" to GO:0009705 * Changed synonym scope of GO:0009705 from "Related" to "Broad" * Deleted GO:0009725 --OBO_REL:is_a--> GO:0042221 * Created link GO:0009725 -OBO_REL:is_a-> GO:0010033 * Deleted GO:0009751 --OBO_REL:is_a--> GO:0042221 * Created link GO:0009751 -OBO_REL:is_a-> GO:0010033 * Deleted GO:0009753 --OBO_REL:is_a--> GO:0042221 * Created link GO:0009753 -OBO_REL:is_a-> GO:0010033 * Deleted synonym "embryogenesis (sensu Metazoa)" from GO:0009792 * Deleted synonym "embryonic development (sensu Metazoa)" from GO:0009792 * Added synonym "embryogenesis" to GO:0009792 * Changed synonym scope of GO:0009792 from "Related" to "Broad" * Changed definition of GO:0009793 from "The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy." to "The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "embryogenesis (sensu Magnoliophyta)" from GO:0009793 * Deleted synonym "embryonic development (sensu Magnoliophyta)" from GO:0009793 * Added synonym "embryogenesis" to GO:0009793 * Changed synonym scope of GO:0009793 from "Related" to "Broad" * Changed definition of GO:0009827 from "The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly." to "The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana." * Deleted synonym "cell wall modification (sensu Magnoliophyta) " from GO:0009827 * Changed definition of GO:0009828 from "The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall." to "The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana." * Deleted synonym "cell wall loosening (sensu Magnoliophyta)" from GO:0009828 * Changed definition of GO:0009831 from "The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin." to "The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana." * Deleted synonym "cell wall modification during cell expansion (sensu Magnoliophyta)" from GO:0009831 * Deleted synonym "cell wall modification during multidimensional cell growth (sensu Magnoliophyta)" from GO:0009831 * Added synonym "cell wall modification during cell expansion" to GO:0009831 * Changed synonym scope of GO:0009831 from "Related" to "Broad" * Changed definition of GO:0009832 from "The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall." to "The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana." * Deleted synonym "cell wall anabolism (sensu Magnoliophyta)" from GO:0009832 * Deleted synonym "cell wall assembly (sensu Magnoliophyta)" from GO:0009832 * Deleted synonym "cell wall biosynthetic process (sensu Magnoliophyta)" from GO:0009832 * Deleted synonym "cell wall formation (sensu Magnoliophyta)" from GO:0009832 * Deleted synonym "cell wall synthesis (sensu Magnoliophyta)" from GO:0009832 * Added synonym "cell wall anabolism" to GO:0009832 * Changed synonym scope of GO:0009832 from "Related" to "Broad" * Added synonym "cell wall assembly" to GO:0009832 * Changed synonym scope of GO:0009832 from "Related" to "Broad" * Added synonym "cell wall biosynthetic process" to GO:0009832 * Changed synonym scope of GO:0009832 from "Related" to "Broad" * Added synonym "cell wall formation" to GO:0009832 * Changed synonym scope of GO:0009832 from "Related" to "Broad" * Added synonym "cell wall synthesis" to GO:0009832 * Changed synonym scope of GO:0009832 from "Related" to "Broad" * Changed definition of GO:0009833 from "The chemical reactions and pathways resulting in the formation of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion." to "The chemical reactions and pathways resulting in the formation of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana." * Deleted synonym "primary cell wall anabolism (sensu Magnoliophyta)" from GO:0009833 * Deleted synonym "primary cell wall biosynthetic process (sensu Magnoliophyta)" from GO:0009833 * Deleted synonym "primary cell wall formation (sensu Magnoliophyta)" from GO:0009833 * Deleted synonym "primary cell wall synthesis (sensu Magnoliophyta)" from GO:0009833 * Added synonym "primary cell wall anabolism" to GO:0009833 * Changed synonym scope of GO:0009833 from "Related" to "Broad" * Added synonym "primary cell wall biosynthetic process" to GO:0009833 * Changed synonym scope of GO:0009833 from "Related" to "Broad" * Added synonym "primary cell wall formation" to GO:0009833 * Changed synonym scope of GO:0009833 from "Related" to "Broad" * Added synonym "primary cell wall synthesis" to GO:0009833 * Changed synonym scope of GO:0009833 from "Related" to "Broad" * Changed definition of GO:0009834 from "The chemical reactions and pathways resulting in the formation of inextensible cellulose and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete." to "The chemical reactions and pathways resulting in the formation of inextensible cellulose and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana." * Deleted synonym "secondary cell wall anabolism (sensu Magnoliophyta)" from GO:0009834 * Deleted synonym "secondary cell wall biosynthetic process (sensu Magnoliophyta)" from GO:0009834 * Deleted synonym "secondary cell wall formation (sensu Magnoliophyta)" from GO:0009834 * Deleted synonym "secondary cell wall synthesis (sensu Magnoliophyta)" from GO:0009834 * Added synonym "secondary cell wall anabolism" to GO:0009834 * Changed synonym scope of GO:0009834 from "Related" to "Broad" * Added synonym "secondary cell wall biosynthetic process" to GO:0009834 * Changed synonym scope of GO:0009834 from "Related" to "Broad" * Added synonym "secondary cell wall formation" to GO:0009834 * Changed synonym scope of GO:0009834 from "Related" to "Broad" * Added synonym "secondary cell wall synthesis" to GO:0009834 * Changed synonym scope of GO:0009834 from "Related" to "Broad" * Deleted synonym "thylakoid (sensu Glaucocystophyceae)" from GO:0009843 * Deleted synonym "spore germination (sensu Fungi)" from GO:0009847 * Changed definition of GO:0009920 from "The cell cycle process whereby the cell plate is formed at the equator of the spindle in the dividing cells during early telophase." to "The cell cycle process whereby the cell plate is formed at the equator of the spindle in the dividing cells during early telophase. An example of this is found in Arabidopsis thaliana." * Deleted synonym "cell plate formation (sensu Magnoliophyta)" from GO:0009920 * Deleted synonym "longitudinal side of cell surface (sensu Magnoliophyta)" from GO:0009930 * Deleted definition dbxref GOC:dl from GO:0010496 * Added definition dbxref GOC:dhl to GO:0010496 * Deleted definition dbxref GOC:rh from GO:0010509 * Added definition dbxref GOC:rph to GO:0010509 * Deleted definition dbxref GOC:dl from GO:0010584 * Added definition dbxref GOC:dhl to GO:0010584 * Deleted GO:0019236 --OBO_REL:is_a--> GO:0042221 * Created link GO:0019236 -OBO_REL:is_a-> GO:0010033 * Deleted GO:0019758 --OBO_REL:is_a--> GO:0016138 * Created link GO:0019758 -OBO_REL:is_a-> GO:0016144 * Created link GO:0019853 -OBO_REL:is_a-> GO:0046394 * Deleted GO:0030152 --OBO_REL:is_a--> GO:0017000 * Created link GO:0030152 -OBO_REL:is_a-> GO:0030651 * Created link GO:0030311 -OBO_REL:is_a-> GO:0006023 * Changed definition of GO:0030313 from "An envelope that surounds a bacterial cell and includes the cytoplasmic membrane and everything external, encompassing the periplasmic space, cell wall, and outer membrane if present." to "An envelope that surrounds a bacterial cell and includes the cytoplasmic membrane and everything external, encompassing the periplasmic space, cell wall, and outer membrane if present." * Created link GO:0030639 -OBO_REL:is_a-> GO:0042181 * Created link GO:0030640 -OBO_REL:is_a-> GO:0042182 * Created link GO:0030648 -OBO_REL:is_a-> GO:0016138 * Created link GO:0030654 -OBO_REL:is_a-> GO:0018130 * Created link GO:0030654 -OBO_REL:is_a-> GO:0043604 * Deleted definition dbxref GOC:rh2 from GO:0032002 * Added definition dbxref GOC:rph to GO:0032002 * Deleted definition dbxref GOC:rh2 from GO:0032003 * Added definition dbxref GOC:rph to GO:0032003 * Created link GO:0032309 -OBO_REL:is_a-> GO:0015908 * Created link GO:0032322 -OBO_REL:is_a-> GO:0042182 * Created link GO:0032324 -OBO_REL:is_a-> GO:0042559 * Deleted definition dbxref GOC:rh1 from GO:0032364 * Added definition dbxref GOC:rph to GO:0032364 * Deleted definition dbxref GOC:rh from GO:0032981 * Added definition dbxref GOC:rph to GO:0032981 * Created link GO:0033013 -OBO_REL:is_a-> GO:0006807 * Deleted GO:0033014 --OBO_REL:is_a--> GO:0009058 * Created link GO:0033014 -OBO_REL:is_a-> GO:0018130 * Created link GO:0033014 -OBO_REL:is_a-> GO:0044271 * Created link GO:0033015 -OBO_REL:is_a-> GO:0044270 * Created link GO:0033049 -OBO_REL:is_a-> GO:0043603 * Created link GO:0033050 -OBO_REL:is_a-> GO:0043604 * Created link GO:0033072 -OBO_REL:is_a-> GO:0030651 * Created link GO:0033223 -OBO_REL:is_a-> GO:0015716 * Created link GO:0033352 -OBO_REL:is_a-> GO:0009226 * Deleted GO:0033357 --OBO_REL:is_a--> GO:0046364 * Deleted GO:0033357 --OBO_REL:is_a--> GO:0033356 * Created link GO:0033357 -OBO_REL:is_a-> GO:0019567 * Created link GO:0033358 -OBO_REL:is_a-> GO:0009226 * Deleted GO:0034097 --OBO_REL:is_a--> GO:0042221 * Created link GO:0034097 -OBO_REL:is_a-> GO:0010033 * Deleted GO:0042047 --OBO_REL:is_a--> GO:0042559 * Deleted GO:0043331 --OBO_REL:is_a--> GO:0042221 * Created link GO:0043331 -OBO_REL:is_a-> GO:0010033 * Deleted GO:0043646 --OBO_REL:is_a--> GO:0043604 * Deleted GO:0051789 --OBO_REL:is_a--> GO:0042221 * Created link GO:0051789 -OBO_REL:is_a-> GO:0010033 * Deleted definition dbxref GOC:dl from GO:0055114 * Deleted definition dbxref GOC:jm from GO:0055114 * Deleted definition dbxref GOC:rh from GO:0055114 * Added definition dbxref GOC:dhl to GO:0055114 * Added definition dbxref GOC:jh2 to GO:0055114 * Added definition dbxref GOC:rph to GO:0055114 * Deleted definition dbxref GOC:rh1 from GO:0060038 * Added definition dbxref GOC:rph to GO:0060038 * Deleted definition dbxref GOC:rh1 from GO:0060039 * Added definition dbxref GOC:rph to GO:0060039 * Deleted definition dbxref GOC:rh from GO:0060043 * Added definition dbxref GOC:rph to GO:0060043 * Deleted definition dbxref GOC:rh from GO:0060044 * Added definition dbxref GOC:rph to GO:0060044 * Deleted definition dbxref GOC:rh from GO:0060045 * Added definition dbxref GOC:rph to GO:0060045 * Deleted general dbxref GOC:rh from synonym Wnt-PCP signaling pathway of GO:0060071 * Added general dbxref GOC:rph to synonym Wnt-PCP signaling pathway of GO:0060071 * Deleted definition dbxref GOC:rh from GO:0060170 * Added definition dbxref GOC:rph to GO:0060170 * Deleted definition dbxref GOC:rh from GO:0060171 * Added definition dbxref GOC:rph to GO:0060171 * Deleted GO:0070848 --OBO_REL:is_a--> GO:0042221 * Created link GO:0070848 -OBO_REL:is_a-> GO:0010033 * Deleted definition dbxref pamgo:go_curators from GO:0075222 * Added definition dbxref GOC:pamgo_curators to GO:0075222 * Deleted GO:0080021 --OBO_REL:is_a--> GO:0042221 * Created link GO:0080021 -OBO_REL:is_a-> GO:0010033 * Deleted definition dbxref GOC:DL from GO:0080022 * Added definition dbxref GOC:dhl to GO:0080022 * Deleted definition dbxref GOC:DL from GO:0080033 * Added definition dbxref GOC:dhl to GO:0080033 * Deleted definition dbxref GOC:DL from GO:0080036 * Added definition dbxref GOC:dhl to GO:0080036 * Deleted definition dbxref GOC:DL from GO:0080037 * Added definition dbxref GOC:dhl to GO:0080037 * Deleted definition dbxref GOC:DL from GO:0080038 * Added definition dbxref GOC:dhl to GO:0080038 * Deleted definition dbxref GOC:DHL from GO:0080140 * Added definition dbxref GOC:dhl to GO:0080140 * Deleted definition dbxref GOC:DHL from GO:0080141 * Added definition dbxref GOC:dhl to GO:0080141 * Deleted definition dbxref GOC:DHL from GO:0080142 * Added definition dbxref GOC:dhl to GO:0080142 * Changed definition of GO:0090043 from "Any process that modulates the frequency, rate or extent of tubulin deactylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid." to "Any process that modulates the frequency, rate or extent of tubulin deacetylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid." * Changed definition of GO:0090044 from "Any process that increases the frequency, rate or extent of tubulin deactylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid." to "Any process that increases the frequency, rate or extent of tubulin deacetylation. Tubulin deacetylation is the removal of an acetyl group from a protein amino acid." From gocvs at genome.stanford.edu Thu Aug 6 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 6 Aug 2009 21:30:12 -0700 Subject: [Go-diff] GO update 08/06/2009 Message-ID: <200908070430.n774UCF8004235@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.731 by 1.734 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0044110 * Created object of type obo:TERM with id GO:0044111 * Created object of type obo:TERM with id GO:0044112 * Created object of type obo:TERM with id GO:0044113 * Created object of type obo:TERM with id GO:0044114 * Created object of type obo:TERM with id GO:0044115 * Created object of type obo:TERM with id GO:0044116 * Created object of type obo:TERM with id GO:0044117 * Created object of type obo:TERM with id GO:0044118 * Created object of type obo:TERM with id GO:0044119 * Created object of type obo:TERM with id GO:0044120 * Created object of type obo:TERM with id GO:0044121 * Created object of type obo:TERM with id GO:0044122 * Created object of type obo:TERM with id GO:0044123 * Created object of type obo:TERM with id GO:0044124 * Created object of type obo:TERM with id GO:0044125 * Created object of type obo:TERM with id GO:0044126 * Created object of type obo:TERM with id GO:0044127 * Created object of type obo:TERM with id GO:0044128 * Created object of type obo:TERM with id GO:0044129 * Created object of type obo:TERM with id GO:0044130 * Created object of type obo:TERM with id GO:0044131 * Created object of type obo:TERM with id GO:0044132 * Created object of type obo:TERM with id GO:0044133 * Created object of type obo:TERM with id GO:0044134 * Created object of type obo:TERM with id GO:0044135 * Created object of type obo:TERM with id GO:0044136 * Created object of type obo:TERM with id GO:0044137 * Created object of type obo:TERM with id GO:0044138 * Created object of type obo:TERM with id GO:0044139 * Created object of type obo:TERM with id GO:0044140 * Created object of type obo:TERM with id GO:0044141 * Created object of type obo:TERM with id GO:0044142 * Created object of type obo:TERM with id GO:0044143 * Created object of type obo:TERM with id GO:0044144 * Created object of type obo:TERM with id GO:0044145 * Created object of type obo:TERM with id GO:0044146 * Created object of type obo:TERM with id GO:0044147 * Created object of type obo:TERM with id GO:0044148 * Created object of type obo:TERM with id GO:0044149 * Created object of type obo:TERM with id GO:0044150 * Created object of type obo:TERM with id GO:0044151 * Created object of type obo:TERM with id GO:0044152 * Created object of type obo:TERM with id GO:0044153 * Created object of type obo:TERM with id GO:0060798 * Created object of type obo:TERM with id GO:0060799 * Created object of type obo:TERM with id GO:0060800 * Created object of type obo:TERM with id GO:0060801 * Created object of type obo:TERM with id GO:0060802 * Created object of type obo:TERM with id GO:0060803 * Created object of type obo:TERM with id GO:0060804 * Created object of type obo:TERM with id GO:0060805 * Created object of type obo:TERM with id GO:0060806 * Created object of type obo:TERM with id GO:0060807 * Created object of type obo:TERM with id GO:0060808 * Created object of type obo:TERM with id GO:0060809 * [Changed name of GO:0044110 from "null" to "growth during symbiotic interaction", Added comment "This term partially replaces the obsolete term 'growth or development during symbiotic interaction ; GO:0052171'. See also 'development during symbiotic interaction ; GO:0044111'.", Set definition of GO:0044110 to "The increase in size or mass of an organism occurring when the organism is in a symbiotic interaction.", Added definition dbxref GO:jl to GO:0044110, Added definition dbxref GOC:pamgo_curators to GO:0044110, Added GO:0044110 to category gosubset_prok, Created link GO:0044110 -OBO_REL:is_a-> GO:0040007, Created link GO:0044110 -part_of-> GO:0044403, Assigned namespace "biological_process" to GO:0044110] * Changed name of GO:0044110 from "null" to "growth during symbiotic interaction" * Added comment "This term partially replaces the obsolete term 'growth or development during symbiotic interaction ; GO:0052171'. See also 'development during symbiotic interaction ; GO:0044111'." * Set definition of GO:0044110 to "The increase in size or mass of an organism occurring when the organism is in a symbiotic interaction." * Added definition dbxref GO:jl to GO:0044110 * Added definition dbxref GOC:pamgo_curators to GO:0044110 * Added GO:0044110 to category gosubset_prok * Created link GO:0044110 -OBO_REL:is_a-> GO:0040007 * Created link GO:0044110 -part_of-> GO:0044403 * Assigned namespace "biological_process" to GO:0044110 * [Changed name of GO:0044111 from "null" to "development during symbiotic interaction", Added comment "This term partially replaces the obsolete term 'growth or development during symbiotic interaction ; GO:0052171'. See also 'growth during symbiotic interaction ; GO:0044110'.", Set definition of GO:0044111 to "The progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction.", Added definition dbxref GO:jl to GO:0044111, Added definition dbxref GOC:pamgo_curators to GO:0044111, Added GO:0044111 to category gosubset_prok, Created link GO:0044111 -part_of-> GO:0044403, Created link GO:0044111 -OBO_REL:is_a-> GO:0032502, Assigned namespace "biological_process" to GO:0044111] * Changed name of GO:0044111 from "null" to "development during symbiotic interaction" * Added comment "This term partially replaces the obsolete term 'growth or development during symbiotic interaction ; GO:0052171'. See also 'growth during symbiotic interaction ; GO:0044110'." * Set definition of GO:0044111 to "The progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction." * Added definition dbxref GO:jl to GO:0044111 * Added definition dbxref GOC:pamgo_curators to GO:0044111 * Added GO:0044111 to category gosubset_prok * Created link GO:0044111 -part_of-> GO:0044403 * Created link GO:0044111 -OBO_REL:is_a-> GO:0032502 * Assigned namespace "biological_process" to GO:0044111 * [Changed name of GO:0044112 from "null" to "growth in other organism during symbiotic interaction", Added comment "This term partially replaces the obsolete term 'growth or development in other organism during symbiotic interaction ; GO:0051831'. See also 'development in other organism during symbiotic interaction ; GO:0044113'.", Set definition of GO:0044112 to "The increase in size or mass of an organism, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism.", Added definition dbxref GOC:cc to GO:0044112, Added definition dbxref GOC:jl to GO:0044112, Created link GO:0044112 -OBO_REL:is_a-> GO:0044110, Assigned namespace "biological_process" to GO:0044112] * Changed name of GO:0044112 from "null" to "growth in other organism during symbiotic interaction" * Added comment "This term partially replaces the obsolete term 'growth or development in other organism during symbiotic interaction ; GO:0051831'. See also 'development in other organism during symbiotic interaction ; GO:0044113'." * Set definition of GO:0044112 to "The increase in size or mass of an organism, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism." * Added definition dbxref GOC:cc to GO:0044112 * Added definition dbxref GOC:jl to GO:0044112 * Created link GO:0044112 -OBO_REL:is_a-> GO:0044110 * Assigned namespace "biological_process" to GO:0044112 * [Changed name of GO:0044113 from "null" to "development in other organism during symbiotic interaction", Added comment "This term partially replaces the obsolete term 'growth or development in other organism during symbiotic interaction ; GO:0051831'. See also 'growth in other organism during symbiotic interaction ; GO:0044112'.", Set definition of GO:0044113 to "The progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism.", Added definition dbxref GO:jl to GO:0044113, Added definition dbxref GOC:cc to GO:0044113, Added GO:0044113 to category gosubset_prok, Created link GO:0044113 -OBO_REL:is_a-> GO:0044111, Assigned namespace "biological_process" to GO:0044113] * Changed name of GO:0044113 from "null" to "development in other organism during symbiotic interaction" * Added comment "This term partially replaces the obsolete term 'growth or development in other organism during symbiotic interaction ; GO:0051831'. See also 'growth in other organism during symbiotic interaction ; GO:0044112'." * Set definition of GO:0044113 to "The progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism." * Added definition dbxref GO:jl to GO:0044113 * Added definition dbxref GOC:cc to GO:0044113 * Added GO:0044113 to category gosubset_prok * Created link GO:0044113 -OBO_REL:is_a-> GO:0044111 * Assigned namespace "biological_process" to GO:0044113 * [Changed name of GO:0044114 from "null" to "development of symbiont in host", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host ; GO:0044412'. See also 'growth of symbiont in host ; GO:0044117'.", Set definition of GO:0044114 to "The progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044114, Added definition dbxref GOC:pamgo_curators to GO:0044114, Added GO:0044114 to category gosubset_prok, Created link GO:0044114 -OBO_REL:is_a-> GO:0044115, Assigned namespace "biological_process" to GO:0044114] * Changed name of GO:0044114 from "null" to "development of symbiont in host" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host ; GO:0044412'. See also 'growth of symbiont in host ; GO:0044117'." * Set definition of GO:0044114 to "The progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044114 * Added definition dbxref GOC:pamgo_curators to GO:0044114 * Added GO:0044114 to category gosubset_prok * Created link GO:0044114 -OBO_REL:is_a-> GO:0044115 * Assigned namespace "biological_process" to GO:0044114 * [Changed name of GO:0044115 from "null" to "development of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont during interaction with host ; GO:0052108'. See also 'growth of symbiont during interaction with host ; GO:0044116'.", Set definition of GO:0044115 to "The progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044115, Added definition dbxref GOC:pamgo_curators to GO:0044115, Added GO:0044115 to category gosubset_prok, Created link GO:0044115 -OBO_REL:is_a-> GO:0044111, Assigned namespace "biological_process" to GO:0044115] * Changed name of GO:0044115 from "null" to "development of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont during interaction with host ; GO:0052108'. See also 'growth of symbiont during interaction with host ; GO:0044116'." * Set definition of GO:0044115 to "The progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044115 * Added definition dbxref GOC:pamgo_curators to GO:0044115 * Added GO:0044115 to category gosubset_prok * Created link GO:0044115 -OBO_REL:is_a-> GO:0044111 * Assigned namespace "biological_process" to GO:0044115 * [Changed name of GO:0044116 from "null" to "growth of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont during interaction with host ; GO:0052108'. See also 'development of symbiont during interaction with host ; GO:0044115'.", Set definition of GO:0044116 to "The increase in size or mass of an organism, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044116, Added definition dbxref GOC:pamgo_curators to GO:0044116, Added GO:0044116 to category gosubset_prok, Created link GO:0044116 -OBO_REL:is_a-> GO:0044110, Assigned namespace "biological_process" to GO:0044116] * Changed name of GO:0044116 from "null" to "growth of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont during interaction with host ; GO:0052108'. See also 'development of symbiont during interaction with host ; GO:0044115'." * Set definition of GO:0044116 to "The increase in size or mass of an organism, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044116 * Added definition dbxref GOC:pamgo_curators to GO:0044116 * Added GO:0044116 to category gosubset_prok * Created link GO:0044116 -OBO_REL:is_a-> GO:0044110 * Assigned namespace "biological_process" to GO:0044116 * [Changed name of GO:0044117 from "null" to "growth of symbiont in host", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host ; GO:0044412'. See also 'development of symbiont in host ; GO:0044114'.", Set definition of GO:0044117 to "The increase in size or mass of an organism, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044117, Added definition dbxref GOC:pamgo_curators to GO:0044117, Added GO:0044117 to category gosubset_prok, Created link GO:0044117 -OBO_REL:is_a-> GO:0044116, Assigned namespace "biological_process" to GO:0044117] * Changed name of GO:0044117 from "null" to "growth of symbiont in host" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host ; GO:0044412'. See also 'development of symbiont in host ; GO:0044114'." * Set definition of GO:0044117 to "The increase in size or mass of an organism, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044117 * Added definition dbxref GOC:pamgo_curators to GO:0044117 * Added GO:0044117 to category gosubset_prok * Created link GO:0044117 -OBO_REL:is_a-> GO:0044116 * Assigned namespace "biological_process" to GO:0044117 * [Changed name of GO:0044118 from "null" to "development of symbiont in host cell", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host cell ; GO:0075065'. See also 'growth of symbiont in host cell ; GO:0044119'.", Set definition of GO:0044118 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044118, Added definition dbxref GOC:pamgo_curators to GO:0044118, Added GO:0044118 to category gosubset_prok, Created link GO:0044118 -OBO_REL:is_a-> GO:0044114, Assigned namespace "biological_process" to GO:0044118] * Changed name of GO:0044118 from "null" to "development of symbiont in host cell" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host cell ; GO:0075065'. See also 'growth of symbiont in host cell ; GO:0044119'." * Set definition of GO:0044118 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044118 * Added definition dbxref GOC:pamgo_curators to GO:0044118 * Added GO:0044118 to category gosubset_prok * Created link GO:0044118 -OBO_REL:is_a-> GO:0044114 * Assigned namespace "biological_process" to GO:0044118 * [Changed name of GO:0044119 from "null" to "growth of symbiont in host cell", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host cell ; GO:0075065'. See also 'development of symbiont in host cell ; GO:0044118'.", Set definition of GO:0044119 to "The increase in size or mass of symbiont, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044119, Added definition dbxref GOC:pamgo_curators to GO:0044119, Added GO:0044119 to category gosubset_prok, Created link GO:0044119 -OBO_REL:is_a-> GO:0044117, Assigned namespace "biological_process" to GO:0044119] * Changed name of GO:0044119 from "null" to "growth of symbiont in host cell" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host cell ; GO:0075065'. See also 'development of symbiont in host cell ; GO:0044118'." * Set definition of GO:0044119 to "The increase in size or mass of symbiont, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044119 * Added definition dbxref GOC:pamgo_curators to GO:0044119 * Added GO:0044119 to category gosubset_prok * Created link GO:0044119 -OBO_REL:is_a-> GO:0044117 * Assigned namespace "biological_process" to GO:0044119 * [Changed name of GO:0044120 from "null" to "development of symbiont in host organelle", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'growth of symbiont in host organelle ; GO:0044121'.", Set definition of GO:0044120 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044120, Added definition dbxref GOC:pamgo_curators to GO:0044120, Added GO:0044120 to category gosubset_prok, Created link GO:0044120 -OBO_REL:is_a-> GO:0044118, Assigned namespace "biological_process" to GO:0044120] * Changed name of GO:0044120 from "null" to "development of symbiont in host organelle" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'growth of symbiont in host organelle ; GO:0044121'." * Set definition of GO:0044120 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044120 * Added definition dbxref GOC:pamgo_curators to GO:0044120 * Added GO:0044120 to category gosubset_prok * Created link GO:0044120 -OBO_REL:is_a-> GO:0044118 * Assigned namespace "biological_process" to GO:0044120 * [Changed name of GO:0044121 from "null" to "growth of symbiont in host organelle", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'development of symbiont in host organelle ; GO:0044120'.", Set definition of GO:0044121 to "The increase in size or mass of a symbiont, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044121, Added definition dbxref GOC:pamgo_curators to GO:0044121, Added GO:0044121 to category gosubset_prok, Created link GO:0044121 -OBO_REL:is_a-> GO:0044119, Assigned namespace "biological_process" to GO:0044121] * Changed name of GO:0044121 from "null" to "growth of symbiont in host organelle" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'development of symbiont in host organelle ; GO:0044120'." * Set definition of GO:0044121 to "The increase in size or mass of a symbiont, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044121 * Added definition dbxref GOC:pamgo_curators to GO:0044121 * Added GO:0044121 to category gosubset_prok * Created link GO:0044121 -OBO_REL:is_a-> GO:0044119 * Assigned namespace "biological_process" to GO:0044121 * [Changed name of GO:0044122 from "null" to "development of symbiont in host vascular tissue", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'growth of symbiont in host vascular tissue ; GO:0044123'.", Set definition of GO:0044122 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044122, Added definition dbxref GOC:pamgo_curators to GO:0044122, Added GO:0044122 to category gosubset_prok, Created link GO:0044122 -OBO_REL:is_a-> GO:0044114, Assigned namespace "biological_process" to GO:0044122] * Changed name of GO:0044122 from "null" to "development of symbiont in host vascular tissue" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'growth of symbiont in host vascular tissue ; GO:0044123'." * Set definition of GO:0044122 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044122 * Added definition dbxref GOC:pamgo_curators to GO:0044122 * Added GO:0044122 to category gosubset_prok * Created link GO:0044122 -OBO_REL:is_a-> GO:0044114 * Assigned namespace "biological_process" to GO:0044122 * [Changed name of GO:0044123 from "null" to "growth of symbiont in host vascular tissue", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'development of symbiont in host vascular tissue ; GO:0044122'.", Set definition of GO:0044123 to "The increase in size or mass of symbiont, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044123, Added definition dbxref GOC:pamgo_curators to GO:0044123, Added GO:0044123 to category gosubset_prok, Created link GO:0044123 -OBO_REL:is_a-> GO:0044117, Assigned namespace "biological_process" to GO:0044123] * Changed name of GO:0044123 from "null" to "growth of symbiont in host vascular tissue" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host organelle ; GO:0075066'. See also 'development of symbiont in host vascular tissue ; GO:0044122'." * Set definition of GO:0044123 to "The increase in size or mass of symbiont, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044123 * Added definition dbxref GOC:pamgo_curators to GO:0044123 * Added GO:0044123 to category gosubset_prok * Created link GO:0044123 -OBO_REL:is_a-> GO:0044117 * Assigned namespace "biological_process" to GO:0044123 * [Changed name of GO:0044124 from "null" to "development of symbiont in host intercellular space", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host intercellular space ; GO:0075067'. See also 'growth of symbiont in host intercellular space ; GO:0044125'.", Set definition of GO:0044124 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's intercellular space. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044124, Added definition dbxref GOC:pamgo_curators to GO:0044124, Added GO:0044124 to category gosubset_prok, Created link GO:0044124 -OBO_REL:is_a-> GO:0044114, Assigned namespace "biological_process" to GO:0044124] * Changed name of GO:0044124 from "null" to "development of symbiont in host intercellular space" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host intercellular space ; GO:0075067'. See also 'growth of symbiont in host intercellular space ; GO:0044125'." * Set definition of GO:0044124 to "The progression of the symbiont from an initial condition to a later condition, occurring in its host's intercellular space. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044124 * Added definition dbxref GOC:pamgo_curators to GO:0044124 * Added GO:0044124 to category gosubset_prok * Created link GO:0044124 -OBO_REL:is_a-> GO:0044114 * Assigned namespace "biological_process" to GO:0044124 * [Changed name of GO:0044125 from "null" to "growth of symbiont in host intercellular space", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host intercellular space ; GO:0075067'. See also 'development of symbiont in host intercellular space ; GO:0044124'.", Set definition of GO:0044125 to "The increase in size or mass of symbiont, occurring in its host's intercellular space. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044125, Added definition dbxref GOC:pamgo_curators to GO:0044125, Added GO:0044125 to category gosubset_prok, Created link GO:0044125 -OBO_REL:is_a-> GO:0044117, Assigned namespace "biological_process" to GO:0044125] * Changed name of GO:0044125 from "null" to "growth of symbiont in host intercellular space" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont in host intercellular space ; GO:0075067'. See also 'development of symbiont in host intercellular space ; GO:0044124'." * Set definition of GO:0044125 to "The increase in size or mass of symbiont, occurring in its host's intercellular space. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044125 * Added definition dbxref GOC:pamgo_curators to GO:0044125 * Added GO:0044125 to category gosubset_prok * Created link GO:0044125 -OBO_REL:is_a-> GO:0044117 * Assigned namespace "biological_process" to GO:0044125 * [Changed name of GO:0044126 from "null" to "regulation of growth of symbiont in host", Added comment "This term partially replaces the obsolete term 'regulation of growth or development of symbiont in host ; GO:0033665'. See also 'regulation of development of symbiont in host ; GO:0044127'.", Set definition of GO:0044126 to "Any process by which the symbiont regulates the increase in its size or mass within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044126, Added definition dbxref GOC:pamgo_curators to GO:0044126, Added GO:0044126 to category gosubset_prok, Created link GO:0044126 -OBO_REL:is_a-> GO:0043903, Created link GO:0044126 -regulates-> GO:0044117, Assigned namespace "biological_process" to GO:0044126] * Changed name of GO:0044126 from "null" to "regulation of growth of symbiont in host" * Added comment "This term partially replaces the obsolete term 'regulation of growth or development of symbiont in host ; GO:0033665'. See also 'regulation of development of symbiont in host ; GO:0044127'." * Set definition of GO:0044126 to "Any process by which the symbiont regulates the increase in its size or mass within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044126 * Added definition dbxref GOC:pamgo_curators to GO:0044126 * Added GO:0044126 to category gosubset_prok * Created link GO:0044126 -OBO_REL:is_a-> GO:0043903 * Created link GO:0044126 -regulates-> GO:0044117 * Assigned namespace "biological_process" to GO:0044126 * [Changed name of GO:0044127 from "null" to "regulation of development of symbiont in host", Added comment "This term partially replaces the obsolete term 'regulation of growth or development of symbiont in host ; GO:0033665'. See also 'regulation of growth of symbiont in host ; GO:0044126'.", Set definition of GO:0044127 to "Any process by which the symbiont regulates its progression from an initial condition to a later condition, within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044127, Added definition dbxref GOC:pamgo_curators to GO:0044127, Added GO:0044127 to category gosubset_prok, Created link GO:0044127 -OBO_REL:is_a-> GO:0043903, Created link GO:0044127 -regulates-> GO:0044114, Assigned namespace "biological_process" to GO:0044127] * Changed name of GO:0044127 from "null" to "regulation of development of symbiont in host" * Added comment "This term partially replaces the obsolete term 'regulation of growth or development of symbiont in host ; GO:0033665'. See also 'regulation of growth of symbiont in host ; GO:0044126'." * Set definition of GO:0044127 to "Any process by which the symbiont regulates its progression from an initial condition to a later condition, within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044127 * Added definition dbxref GOC:pamgo_curators to GO:0044127 * Added GO:0044127 to category gosubset_prok * Created link GO:0044127 -OBO_REL:is_a-> GO:0043903 * Created link GO:0044127 -regulates-> GO:0044114 * Assigned namespace "biological_process" to GO:0044127 * [Changed name of GO:0044128 from "null" to "positive regulation of growth of symbiont in host", Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont in host ; GO:0033666'. See also 'positive regulation of development of symbiont in host ; GO:0044129'.", Set definition of GO:0044128 to "Any process by which the symbiont activates, maintains or increases its size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044128, Added definition dbxref GOC:pamgo_curators to GO:0044128, Added GO:0044128 to category gosubset_prok, Created link GO:0044128 -OBO_REL:is_a-> GO:0044126, Created link GO:0044128 -positively_regulates-> GO:0044117, Assigned namespace "biological_process" to GO:0044128] * Changed name of GO:0044128 from "null" to "positive regulation of growth of symbiont in host" * Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont in host ; GO:0033666'. See also 'positive regulation of development of symbiont in host ; GO:0044129'." * Set definition of GO:0044128 to "Any process by which the symbiont activates, maintains or increases its size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044128 * Added definition dbxref GOC:pamgo_curators to GO:0044128 * Added GO:0044128 to category gosubset_prok * Created link GO:0044128 -OBO_REL:is_a-> GO:0044126 * Created link GO:0044128 -positively_regulates-> GO:0044117 * Assigned namespace "biological_process" to GO:0044128 * [Changed name of GO:0044129 from "null" to "positive regulation of development of symbiont in host", Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont in host ; GO:0033666'. See also 'positive regulation of growth of symbiont in host ; GO:0044128'.", Set definition of GO:0044129 to "Any process by which the symbiont activates or maintains its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044129, Added definition dbxref GOC:pamgo_curators to GO:0044129, Added GO:0044129 to category gosubset_prok, Created link GO:0044129 -OBO_REL:is_a-> GO:0044127, Created link GO:0044129 -positively_regulates-> GO:0044114, Assigned namespace "biological_process" to GO:0044129] * Changed name of GO:0044129 from "null" to "positive regulation of development of symbiont in host" * Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont in host ; GO:0033666'. See also 'positive regulation of growth of symbiont in host ; GO:0044128'." * Set definition of GO:0044129 to "Any process by which the symbiont activates or maintains its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044129 * Added definition dbxref GOC:pamgo_curators to GO:0044129 * Added GO:0044129 to category gosubset_prok * Created link GO:0044129 -OBO_REL:is_a-> GO:0044127 * Created link GO:0044129 -positively_regulates-> GO:0044114 * Assigned namespace "biological_process" to GO:0044129 * [Changed name of GO:0044130 from "null" to "negative regulation of growth of symbiont in host", Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont in host ; GO:0033667'. See also 'negative regulation of development of symbiont in host ; GO:0044131'.", Set definition of GO:0044130 to "Any process by which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044130, Added definition dbxref GOC:pamgo_curators to GO:0044130, Added GO:0044130 to category gosubset_prok, Created link GO:0044130 -negatively_regulates-> GO:0044117, Created link GO:0044130 -OBO_REL:is_a-> GO:0044126, Assigned namespace "biological_process" to GO:0044130] * Changed name of GO:0044130 from "null" to "negative regulation of growth of symbiont in host" * Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont in host ; GO:0033667'. See also 'negative regulation of development of symbiont in host ; GO:0044131'." * Set definition of GO:0044130 to "Any process by which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044130 * Added definition dbxref GOC:pamgo_curators to GO:0044130 * Added GO:0044130 to category gosubset_prok * Created link GO:0044130 -negatively_regulates-> GO:0044117 * Created link GO:0044130 -OBO_REL:is_a-> GO:0044126 * Assigned namespace "biological_process" to GO:0044130 * [Changed name of GO:0044131 from "null" to "negative regulation of development of symbiont in host", Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont in host ; GO:0033667'. See also 'negative regulation of growth of symbiont in host ; GO:0044130'.", Set definition of GO:0044131 to "Any process by which the symbiont stops, prevents or reduces its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044131, Added definition dbxref GOC:pamgo_curators to GO:0044131, Added GO:0044131 to category gosubset_prok, Created link GO:0044131 -negatively_regulates-> GO:0044114, Created link GO:0044131 -OBO_REL:is_a-> GO:0044127, Assigned namespace "biological_process" to GO:0044131] * Changed name of GO:0044131 from "null" to "negative regulation of development of symbiont in host" * Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont in host ; GO:0033667'. See also 'negative regulation of growth of symbiont in host ; GO:0044130'." * Set definition of GO:0044131 to "Any process by which the symbiont stops, prevents or reduces its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044131 * Added definition dbxref GOC:pamgo_curators to GO:0044131 * Added GO:0044131 to category gosubset_prok * Created link GO:0044131 -negatively_regulates-> GO:0044114 * Created link GO:0044131 -OBO_REL:is_a-> GO:0044127 * Assigned namespace "biological_process" to GO:0044131 * [Changed name of GO:0044132 from "null" to "development of symbiont on or near host", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host ; GO:0044408'. See also 'growth of symbiont on or near host ; GO:0044133'.", Set definition of GO:0044132 to "The progression of a symbiont from an initial condition to a later condition, within the cells or tissues of its host organism.", Added definition dbxref GOC:jl to GO:0044132, Added definition dbxref GOC:pamgo_curators to GO:0044132, Added GO:0044132 to category gosubset_prok, Created link GO:0044132 -OBO_REL:is_a-> GO:0044115, Assigned namespace "biological_process" to GO:0044132] * Changed name of GO:0044132 from "null" to "development of symbiont on or near host" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host ; GO:0044408'. See also 'growth of symbiont on or near host ; GO:0044133'." * Set definition of GO:0044132 to "The progression of a symbiont from an initial condition to a later condition, within the cells or tissues of its host organism." * Added definition dbxref GOC:jl to GO:0044132 * Added definition dbxref GOC:pamgo_curators to GO:0044132 * Added GO:0044132 to category gosubset_prok * Created link GO:0044132 -OBO_REL:is_a-> GO:0044115 * Assigned namespace "biological_process" to GO:0044132 * [Changed name of GO:0044133 from "null" to "growth of symbiont on or near host", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host ; GO:0044408'. See also 'development of symbiont on or near host ; GO:0044132'.", Set definition of GO:0044133 to "The increase in size or mass of a symbiont within the cells or tissues of its host organism.", Added definition dbxref GOC:jl to GO:0044133, Added definition dbxref GOC:pamgo_curators to GO:0044133, Added GO:0044133 to category gosubset_prok, Created link GO:0044133 -OBO_REL:is_a-> GO:0044116, Assigned namespace "biological_process" to GO:0044133] * Changed name of GO:0044133 from "null" to "growth of symbiont on or near host" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host ; GO:0044408'. See also 'development of symbiont on or near host ; GO:0044132'." * Set definition of GO:0044133 to "The increase in size or mass of a symbiont within the cells or tissues of its host organism." * Added definition dbxref GOC:jl to GO:0044133 * Added definition dbxref GOC:pamgo_curators to GO:0044133 * Added GO:0044133 to category gosubset_prok * Created link GO:0044133 -OBO_REL:is_a-> GO:0044116 * Assigned namespace "biological_process" to GO:0044133 * [Changed name of GO:0044134 from "null" to "development of symbiont on or near host phyllosphere", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host phyllosphere ; GO:0075013'. See also 'growth of symbiont on or near host phyllosphere ; GO:0044135'.", Set definition of GO:0044134 to "The progression of the symbiont from an initial condition to a later condition, occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044134, Added definition dbxref GOC:pamgo_curators to GO:0044134, Created link GO:0044134 -OBO_REL:is_a-> GO:0044132, Assigned namespace "biological_process" to GO:0044134] * Changed name of GO:0044134 from "null" to "development of symbiont on or near host phyllosphere" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host phyllosphere ; GO:0075013'. See also 'growth of symbiont on or near host phyllosphere ; GO:0044135'." * Set definition of GO:0044134 to "The progression of the symbiont from an initial condition to a later condition, occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044134 * Added definition dbxref GOC:pamgo_curators to GO:0044134 * Created link GO:0044134 -OBO_REL:is_a-> GO:0044132 * Assigned namespace "biological_process" to GO:0044134 * [Changed name of GO:0044135 from "null" to "growth of symbiont on or near host phyllosphere", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host phyllosphere ; GO:0075013'. See also 'development of symbiont on or near host phyllosphere ; GO:0044134'.", Set definition of GO:0044135 to "The increase in size or mass of symbiont occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044135, Added definition dbxref GOC:pamgo_curators to GO:0044135, Created link GO:0044135 -OBO_REL:is_a-> GO:0044133, Assigned namespace "biological_process" to GO:0044135] * Changed name of GO:0044135 from "null" to "growth of symbiont on or near host phyllosphere" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host phyllosphere ; GO:0075013'. See also 'development of symbiont on or near host phyllosphere ; GO:0044134'." * Set definition of GO:0044135 to "The increase in size or mass of symbiont occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044135 * Added definition dbxref GOC:pamgo_curators to GO:0044135 * Created link GO:0044135 -OBO_REL:is_a-> GO:0044133 * Assigned namespace "biological_process" to GO:0044135 * [Changed name of GO:0044136 from "null" to "development of symbiont on or near host rhizosphere", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host rhizosphere ; GO:0075014'. See also 'growth of symbiont on or near host rhizosphere ; GO:0044137'.", Set definition of GO:0044136 to "The progression of the symbiont from an initial condition to a later condition, occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044136, Added definition dbxref GOC:pamgo_curators to GO:0044136, Added GO:0044136 to category gosubset_prok, Created link GO:0044136 -OBO_REL:is_a-> GO:0044132, Assigned namespace "biological_process" to GO:0044136] * Changed name of GO:0044136 from "null" to "development of symbiont on or near host rhizosphere" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host rhizosphere ; GO:0075014'. See also 'growth of symbiont on or near host rhizosphere ; GO:0044137'." * Set definition of GO:0044136 to "The progression of the symbiont from an initial condition to a later condition, occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044136 * Added definition dbxref GOC:pamgo_curators to GO:0044136 * Added GO:0044136 to category gosubset_prok * Created link GO:0044136 -OBO_REL:is_a-> GO:0044132 * Assigned namespace "biological_process" to GO:0044136 * [Changed name of GO:0044137 from "null" to "growth of symbiont on or near host rhizosphere", Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host rhizosphere ; GO:0075014'. See also 'development of symbiont on or near host rhizosphere ; GO:0044136'.", Set definition of GO:0044137 to "The increase in size or mass of symbiont occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:jl to GO:0044137, Added definition dbxref GOC:pamgo_curators to GO:0044137, Added GO:0044137 to category gosubset_prok, Created link GO:0044137 -OBO_REL:is_a-> GO:0044133, Assigned namespace "biological_process" to GO:0044137] * Changed name of GO:0044137 from "null" to "growth of symbiont on or near host rhizosphere" * Added comment "This term partially replaces the obsolete term 'growth or development of symbiont on or near host rhizosphere ; GO:0075014'. See also 'development of symbiont on or near host rhizosphere ; GO:0044136'." * Set definition of GO:0044137 to "The increase in size or mass of symbiont occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:jl to GO:0044137 * Added definition dbxref GOC:pamgo_curators to GO:0044137 * Added GO:0044137 to category gosubset_prok * Created link GO:0044137 -OBO_REL:is_a-> GO:0044133 * Assigned namespace "biological_process" to GO:0044137 * [Changed name of GO:0044138 from "null" to "modulation of development of symbiont on or near host", Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont on or near host ; GO:0075305'. See also 'modulation of growth of symbiont on or near host ; GO:0044139'.", Set definition of GO:0044138 to "Any process by which the symbiont regulates its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism.", Added definition dbxref GOC:jl to GO:0044138, Added definition dbxref GOC:pamgo_curators to GO:0044138, Added GO:0044138 to category gosubset_prok, Created link GO:0044138 -OBO_REL:is_a-> GO:0044145, Created link GO:0044138 -regulates-> GO:0044132, Assigned namespace "biological_process" to GO:0044138] * Changed name of GO:0044138 from "null" to "modulation of development of symbiont on or near host" * Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont on or near host ; GO:0075305'. See also 'modulation of growth of symbiont on or near host ; GO:0044139'." * Set definition of GO:0044138 to "Any process by which the symbiont regulates its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." * Added definition dbxref GOC:jl to GO:0044138 * Added definition dbxref GOC:pamgo_curators to GO:0044138 * Added GO:0044138 to category gosubset_prok * Created link GO:0044138 -OBO_REL:is_a-> GO:0044145 * Created link GO:0044138 -regulates-> GO:0044132 * Assigned namespace "biological_process" to GO:0044138 * [Changed name of GO:0044139 from "null" to "modulation of growth of symbiont on or near host", Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont on or near host ; GO:0075305'. See also 'modulation of development of symbiont on or near host ; GO:0044138'.", Set definition of GO:0044139 to "Any process by which the symbiont regulates the increase in its size or mass on or near the cells or tissues of the host organism.", Added definition dbxref GOC:jl to GO:0044139, Added definition dbxref GOC:pamgo_curators to GO:0044139, Added GO:0044139 to category gosubset_prok, Created link GO:0044139 -regulates-> GO:0044133, Created link GO:0044139 -OBO_REL:is_a-> GO:0044144, Assigned namespace "biological_process" to GO:0044139] * Changed name of GO:0044139 from "null" to "modulation of growth of symbiont on or near host" * Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont on or near host ; GO:0075305'. See also 'modulation of development of symbiont on or near host ; GO:0044138'." * Set definition of GO:0044139 to "Any process by which the symbiont regulates the increase in its size or mass on or near the cells or tissues of the host organism." * Added definition dbxref GOC:jl to GO:0044139 * Added definition dbxref GOC:pamgo_curators to GO:0044139 * Added GO:0044139 to category gosubset_prok * Created link GO:0044139 -regulates-> GO:0044133 * Created link GO:0044139 -OBO_REL:is_a-> GO:0044144 * Assigned namespace "biological_process" to GO:0044139 * [Changed name of GO:0044140 from "null" to "negative regulation of growth of symbiont on or near host surface", Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont on or near host surface ; GO:0075309'. See also 'negative regulation of development of symbiont on or near host surface ; GO:0044141'.", Set definition of GO:0044140 to "Any process that stops, prevents or reduces the frequency, rate or extent of the increase in the symbiont's size or mass on or near the cells or tissues of the host organism.", Added definition dbxref GOC:jl to GO:0044140, Added definition dbxref GOC:pamgo_curators to GO:0044140, Added GO:0044140 to category gosubset_prok, Created link GO:0044140 -OBO_REL:is_a-> GO:0044139, Created link GO:0044140 -negatively_regulates-> GO:0044133, Assigned namespace "biological_process" to GO:0044140] * Changed name of GO:0044140 from "null" to "negative regulation of growth of symbiont on or near host surface" * Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont on or near host surface ; GO:0075309'. See also 'negative regulation of development of symbiont on or near host surface ; GO:0044141'." * Set definition of GO:0044140 to "Any process that stops, prevents or reduces the frequency, rate or extent of the increase in the symbiont's size or mass on or near the cells or tissues of the host organism." * Added definition dbxref GOC:jl to GO:0044140 * Added definition dbxref GOC:pamgo_curators to GO:0044140 * Added GO:0044140 to category gosubset_prok * Created link GO:0044140 -OBO_REL:is_a-> GO:0044139 * Created link GO:0044140 -negatively_regulates-> GO:0044133 * Assigned namespace "biological_process" to GO:0044140 * [Changed name of GO:0044141 from "null" to "negative regulation of development of symbiont on or near host surface", Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont on or near host surface ; GO:0075309'. See also 'negative regulation of growth of symbiont on or near host surface ; GO:0044140'.", Set definition of GO:0044141 to "Any process that stops, prevents or reduces the frequency, rate or extent of the symbiont's progression from an initial condition to a later condition, on or near the cells or tissues of the host organism.", Added definition dbxref GOC:jl to GO:0044141, Added definition dbxref GOC:pamgo_curators to GO:0044141, Added GO:0044141 to category gosubset_prok, Created link GO:0044141 -OBO_REL:is_a-> GO:0044138, Created link GO:0044141 -negatively_regulates-> GO:0044132, Assigned namespace "biological_process" to GO:0044141] * Changed name of GO:0044141 from "null" to "negative regulation of development of symbiont on or near host surface" * Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont on or near host surface ; GO:0075309'. See also 'negative regulation of growth of symbiont on or near host surface ; GO:0044140'." * Set definition of GO:0044141 to "Any process that stops, prevents or reduces the frequency, rate or extent of the symbiont's progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." * Added definition dbxref GOC:jl to GO:0044141 * Added definition dbxref GOC:pamgo_curators to GO:0044141 * Added GO:0044141 to category gosubset_prok * Created link GO:0044141 -OBO_REL:is_a-> GO:0044138 * Created link GO:0044141 -negatively_regulates-> GO:0044132 * Assigned namespace "biological_process" to GO:0044141 * [Changed name of GO:0044142 from "null" to "positive regulation of growth of symbiont on or near host surface", Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont on or near host surface ; GO:0075337'. See also 'positive regulation of development of symbiont on or near host surface ; GO:0044143'.", Set definition of GO:0044142 to "Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass on or near the cells or tissues of the host organism.", Added definition dbxref GOC:jl to GO:0044142, Added definition dbxref GOC:pamgo_curators to GO:0044142, Added GO:0044142 to category gosubset_prok, Created link GO:0044142 -positively_regulates-> GO:0044133, Created link GO:0044142 -OBO_REL:is_a-> GO:0044139, Assigned namespace "biological_process" to GO:0044142] * Changed name of GO:0044142 from "null" to "positive regulation of growth of symbiont on or near host surface" * Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont on or near host surface ; GO:0075337'. See also 'positive regulation of development of symbiont on or near host surface ; GO:0044143'." * Set definition of GO:0044142 to "Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass on or near the cells or tissues of the host organism." * Added definition dbxref GOC:jl to GO:0044142 * Added definition dbxref GOC:pamgo_curators to GO:0044142 * Added GO:0044142 to category gosubset_prok * Created link GO:0044142 -positively_regulates-> GO:0044133 * Created link GO:0044142 -OBO_REL:is_a-> GO:0044139 * Assigned namespace "biological_process" to GO:0044142 * [Changed name of GO:0044143 from "null" to "positive regulation of development of symbiont on or near host surface", Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont on or near host surface ; GO:0075337'. See also 'positive regulation of growth of symbiont on or near host surface ; GO:0044142'.", Set definition of GO:0044143 to "Any process that activates or increases the frequency, rate or extent of the symbiont's progression from an initial condition to a later condition, on or near the cells or tissues of the host organism.", Added definition dbxref GOC:jl to GO:0044143, Added definition dbxref GOC:pamgo_curators to GO:0044143, Added GO:0044143 to category gosubset_prok, Created link GO:0044143 -positively_regulates-> GO:0044132, Created link GO:0044143 -OBO_REL:is_a-> GO:0044138, Assigned namespace "biological_process" to GO:0044143] * Changed name of GO:0044143 from "null" to "positive regulation of development of symbiont on or near host surface" * Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont on or near host surface ; GO:0075337'. See also 'positive regulation of growth of symbiont on or near host surface ; GO:0044142'." * Set definition of GO:0044143 to "Any process that activates or increases the frequency, rate or extent of the symbiont's progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." * Added definition dbxref GOC:jl to GO:0044143 * Added definition dbxref GOC:pamgo_curators to GO:0044143 * Added GO:0044143 to category gosubset_prok * Created link GO:0044143 -positively_regulates-> GO:0044132 * Created link GO:0044143 -OBO_REL:is_a-> GO:0044138 * Assigned namespace "biological_process" to GO:0044143 * [Changed name of GO:0044144 from "null" to "modulation of growth of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont during interaction with host ; GO:0075338'. See also 'modulation of development of symbiont during interaction with host ; GO:0044145'.", Set definition of GO:0044144 to "Any process that modulates the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism.", Added definition dbxref GOC:jl to GO:0044144, Added definition dbxref GOC:pamgo_curators to GO:0044144, Added GO:0044144 to category gosubset_prok, Created link GO:0044144 -regulates-> GO:0044116, Created link GO:0044144 -OBO_REL:is_a-> GO:0043903, Assigned namespace "biological_process" to GO:0044144] * Changed name of GO:0044144 from "null" to "modulation of growth of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont during interaction with host ; GO:0075338'. See also 'modulation of development of symbiont during interaction with host ; GO:0044145'." * Set definition of GO:0044144 to "Any process that modulates the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism." * Added definition dbxref GOC:jl to GO:0044144 * Added definition dbxref GOC:pamgo_curators to GO:0044144 * Added GO:0044144 to category gosubset_prok * Created link GO:0044144 -regulates-> GO:0044116 * Created link GO:0044144 -OBO_REL:is_a-> GO:0043903 * Assigned namespace "biological_process" to GO:0044144 * [Changed name of GO:0044145 from "null" to "modulation of development of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont during interaction with host ; GO:0075338'. See also 'modulation of growth of symbiont during interaction with host ; GO:0044144'.", Set definition of GO:0044145 to "Any process that modulates the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism.", Added definition dbxref GOC:jl to GO:0044145, Added definition dbxref GOC:pamgo_curators to GO:0044145, Added GO:0044145 to category gosubset_prok, Created link GO:0044145 -regulates-> GO:0044115, Created link GO:0044145 -OBO_REL:is_a-> GO:0043903, Assigned namespace "biological_process" to GO:0044145] * Changed name of GO:0044145 from "null" to "modulation of development of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'modulation of growth or development of symbiont during interaction with host ; GO:0075338'. See also 'modulation of growth of symbiont during interaction with host ; GO:0044144'." * Set definition of GO:0044145 to "Any process that modulates the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." * Added definition dbxref GOC:jl to GO:0044145 * Added definition dbxref GOC:pamgo_curators to GO:0044145 * Added GO:0044145 to category gosubset_prok * Created link GO:0044145 -regulates-> GO:0044115 * Created link GO:0044145 -OBO_REL:is_a-> GO:0043903 * Assigned namespace "biological_process" to GO:0044145 * [Changed name of GO:0044146 from "null" to "negative regulation of growth of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont during interaction with host ; GO:0075340'. See also 'negative regulation of development of symbiont during interaction with host ; GO:0044147'.", Set definition of GO:0044146 to "Any process that stops, prevents or reduces the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism.", Added definition dbxref GOC:jl to GO:0044146, Added definition dbxref GOC:pamgo_curators to GO:0044146, Added GO:0044146 to category gosubset_prok, Created link GO:0044146 -OBO_REL:is_a-> GO:0043901, Created link GO:0044146 -OBO_REL:is_a-> GO:0044144, Created link GO:0044146 -negatively_regulates-> GO:0044116, Assigned namespace "biological_process" to GO:0044146] * Changed name of GO:0044146 from "null" to "negative regulation of growth of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont during interaction with host ; GO:0075340'. See also 'negative regulation of development of symbiont during interaction with host ; GO:0044147'." * Set definition of GO:0044146 to "Any process that stops, prevents or reduces the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism." * Added definition dbxref GOC:jl to GO:0044146 * Added definition dbxref GOC:pamgo_curators to GO:0044146 * Added GO:0044146 to category gosubset_prok * Created link GO:0044146 -OBO_REL:is_a-> GO:0043901 * Created link GO:0044146 -OBO_REL:is_a-> GO:0044144 * Created link GO:0044146 -negatively_regulates-> GO:0044116 * Assigned namespace "biological_process" to GO:0044146 * [Changed name of GO:0044147 from "null" to "negative regulation of development of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont during interaction with host ; GO:0075340'. See also 'negative regulation of growth of symbiont during interaction with host ; GO:0044146'.", Set definition of GO:0044147 to "Any process that stops, prevents or reduces the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism.", Added definition dbxref GOC:jl to GO:0044147, Added definition dbxref GOC:pamgo_curators to GO:0044147, Created link GO:0044147 -negatively_regulates-> GO:0044115, Created link GO:0044147 -OBO_REL:is_a-> GO:0044145, Created link GO:0044147 -OBO_REL:is_a-> GO:0043901, Assigned namespace "biological_process" to GO:0044147] * Changed name of GO:0044147 from "null" to "negative regulation of development of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'negative regulation of growth or development of symbiont during interaction with host ; GO:0075340'. See also 'negative regulation of growth of symbiont during interaction with host ; GO:0044146'." * Set definition of GO:0044147 to "Any process that stops, prevents or reduces the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." * Added definition dbxref GOC:jl to GO:0044147 * Added definition dbxref GOC:pamgo_curators to GO:0044147 * Created link GO:0044147 -negatively_regulates-> GO:0044115 * Created link GO:0044147 -OBO_REL:is_a-> GO:0044145 * Created link GO:0044147 -OBO_REL:is_a-> GO:0043901 * Assigned namespace "biological_process" to GO:0044147 * [Changed name of GO:0044148 from "null" to "positive regulation of growth of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont during interaction with host ; GO:0075339'. See also 'positive regulation of development of symbiont during interaction with host ; GO:0044149'.", Set definition of GO:0044148 to "Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism.", Added definition dbxref GOC:jl to GO:0044148, Added definition dbxref GOC:pamgo_curators to GO:0044148, Added GO:0044148 to category gosubset_prok, Created link GO:0044148 -positively_regulates-> GO:0044116, Created link GO:0044148 -OBO_REL:is_a-> GO:0043902, Created link GO:0044148 -OBO_REL:is_a-> GO:0044144, Assigned namespace "biological_process" to GO:0044148] * Changed name of GO:0044148 from "null" to "positive regulation of growth of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont during interaction with host ; GO:0075339'. See also 'positive regulation of development of symbiont during interaction with host ; GO:0044149'." * Set definition of GO:0044148 to "Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism occurring in, on or near the exterior of its host organism." * Added definition dbxref GOC:jl to GO:0044148 * Added definition dbxref GOC:pamgo_curators to GO:0044148 * Added GO:0044148 to category gosubset_prok * Created link GO:0044148 -positively_regulates-> GO:0044116 * Created link GO:0044148 -OBO_REL:is_a-> GO:0043902 * Created link GO:0044148 -OBO_REL:is_a-> GO:0044144 * Assigned namespace "biological_process" to GO:0044148 * [Changed name of GO:0044149 from "null" to "positive regulation of development of symbiont during interaction with host", Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont during interaction with host ; GO:0075339'. See also 'positive regulation of growth of symbiont during interaction with host ; GO:0044148'.", Set definition of GO:0044149 to "Any process that activates or increases the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism.", Added definition dbxref GOC:jl to GO:0044149, Added definition dbxref GOC:pamgo_curators to GO:0044149, Added GO:0044149 to category gosubset_prok, Created link GO:0044149 -OBO_REL:is_a-> GO:0043902, Created link GO:0044149 -positively_regulates-> GO:0044115, Created link GO:0044149 -OBO_REL:is_a-> GO:0044145, Assigned namespace "biological_process" to GO:0044149] * Changed name of GO:0044149 from "null" to "positive regulation of development of symbiont during interaction with host" * Added comment "This term partially replaces the obsolete term 'positive regulation of growth or development of symbiont during interaction with host ; GO:0075339'. See also 'positive regulation of growth of symbiont during interaction with host ; GO:0044148'." * Set definition of GO:0044149 to "Any process that activates or increases the frequency, rate or extent of the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." * Added definition dbxref GOC:jl to GO:0044149 * Added definition dbxref GOC:pamgo_curators to GO:0044149 * Added GO:0044149 to category gosubset_prok * Created link GO:0044149 -OBO_REL:is_a-> GO:0043902 * Created link GO:0044149 -positively_regulates-> GO:0044115 * Created link GO:0044149 -OBO_REL:is_a-> GO:0044145 * Assigned namespace "biological_process" to GO:0044149 * [Changed name of GO:0044150 from "null" to "development of organism on or near symbiont surface", Set definition of GO:0044150 to "The progression of an organism from an initial condition to a later condition, occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:cc to GO:0044150, Added definition dbxref GOC:jl to GO:0044150, Added GO:0044150 to category gosubset_prok, Created link GO:0044150 -OBO_REL:is_a-> GO:0044152, Assigned namespace "biological_process" to GO:0044150] * Changed name of GO:0044150 from "null" to "development of organism on or near symbiont surface" * Set definition of GO:0044150 to "The progression of an organism from an initial condition to a later condition, occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:cc to GO:0044150 * Added definition dbxref GOC:jl to GO:0044150 * Added GO:0044150 to category gosubset_prok * Created link GO:0044150 -OBO_REL:is_a-> GO:0044152 * Assigned namespace "biological_process" to GO:0044150 * [Changed name of GO:0044151 from "null" to "growth of organism on or near symbiont surface", Added comment "This term partially replaces the obsolete term 'growth or development of organism on or near symbiont surface ; GO:0051857'. See also 'development of organism on or near symbiont surface ; GO:0044150'.", Set definition of GO:0044151 to "The increase in size or mass of an organism occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.", Added definition dbxref GOC:cc to GO:0044151, Added definition dbxref GOC:jl to GO:0044151, Added GO:0044151 to category gosubset_prok, Created link GO:0044151 -OBO_REL:is_a-> GO:0044153, Assigned namespace "biological_process" to GO:0044151] * Changed name of GO:0044151 from "null" to "growth of organism on or near symbiont surface" * Added comment "This term partially replaces the obsolete term 'growth or development of organism on or near symbiont surface ; GO:0051857'. See also 'development of organism on or near symbiont surface ; GO:0044150'." * Set definition of GO:0044151 to "The increase in size or mass of an organism occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction." * Added definition dbxref GOC:cc to GO:0044151 * Added definition dbxref GOC:jl to GO:0044151 * Added GO:0044151 to category gosubset_prok * Created link GO:0044151 -OBO_REL:is_a-> GO:0044153 * Assigned namespace "biological_process" to GO:0044151 * [Changed name of GO:0044152 from "null" to "development on or near surface of other organism during symbiotic interaction", Added comment "This term partially replaces the obsolete term 'growth or development on or near surface of other organism during symbiotic interaction ; GO:0051827'. See also 'growth on or near surface of other organism during symbiotic interaction ; GO:0044153'.", Set definition of GO:0044152 to "The progression of an organism from an initial condition to a later condition, occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction.", Added definition dbxref GOC:cc to GO:0044152, Added definition dbxref GOC:jl to GO:0044152, Added GO:0044152 to category gosubset_prok, Created link GO:0044152 -OBO_REL:is_a-> GO:0044111, Assigned namespace "biological_process" to GO:0044152] * Changed name of GO:0044152 from "null" to "development on or near surface of other organism during symbiotic interaction" * Added comment "This term partially replaces the obsolete term 'growth or development on or near surface of other organism during symbiotic interaction ; GO:0051827'. See also 'growth on or near surface of other organism during symbiotic interaction ; GO:0044153'." * Set definition of GO:0044152 to "The progression of an organism from an initial condition to a later condition, occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction." * Added definition dbxref GOC:cc to GO:0044152 * Added definition dbxref GOC:jl to GO:0044152 * Added GO:0044152 to category gosubset_prok * Created link GO:0044152 -OBO_REL:is_a-> GO:0044111 * Assigned namespace "biological_process" to GO:0044152 * [Changed name of GO:0044153 from "null" to "growth on or near surface of other organism during symbiotic interaction", Added comment "This term partially replaces the obsolete term 'growth or development on or near surface of other organism during symbiotic interaction ; GO:0051827'. See also 'development on or near surface of other organism during symbiotic interaction ; GO:0044152'.", Set definition of GO:0044153 to "The increase in size or mass of an organism occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction.", Added definition dbxref GOC:cc to GO:0044153, Added definition dbxref GOC:jl to GO:0044153, Added GO:0044153 to category gosubset_prok, Created link GO:0044153 -OBO_REL:is_a-> GO:0044110, Assigned namespace "biological_process" to GO:0044153] * Changed name of GO:0044153 from "null" to "growth on or near surface of other organism during symbiotic interaction" * Added comment "This term partially replaces the obsolete term 'growth or development on or near surface of other organism during symbiotic interaction ; GO:0051827'. See also 'development on or near surface of other organism during symbiotic interaction ; GO:0044152'." * Set definition of GO:0044153 to "The increase in size or mass of an organism occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction." * Added definition dbxref GOC:cc to GO:0044153 * Added definition dbxref GOC:jl to GO:0044153 * Added GO:0044153 to category gosubset_prok * Created link GO:0044153 -OBO_REL:is_a-> GO:0044110 * Assigned namespace "biological_process" to GO:0044153 * [Changed name of GO:0060798 from "null" to "transforming growth factor beta receptor signaling pathway involved in mesodermal cell fate specification", Set definition of GO:0060798 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the specification of a mesodermal fate.", Added definition dbxref GOC:dph to GO:0060798, Added definition dbxref GOC:sdb_2009 to GO:0060798, Added definition dbxref GOC:tb to GO:0060798, Created link GO:0060798 -OBO_REL:is_a-> GO:0060797, Created link GO:0060798 -part_of-> GO:0007501, Assigned namespace "biological_process" to GO:0060798] * Changed name of GO:0060798 from "null" to "transforming growth factor beta receptor signaling pathway involved in mesodermal cell fate specification" * Set definition of GO:0060798 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the specification of a mesodermal fate." * Added definition dbxref GOC:dph to GO:0060798 * Added definition dbxref GOC:sdb_2009 to GO:0060798 * Added definition dbxref GOC:tb to GO:0060798 * Created link GO:0060798 -OBO_REL:is_a-> GO:0060797 * Created link GO:0060798 -part_of-> GO:0007501 * Assigned namespace "biological_process" to GO:0060798 * [Changed name of GO:0060799 from "null" to "transforming growth factor beta receptor signaling pathway involved in endodermal cell fate specification", Set definition of GO:0060799 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the commitment of an unspecified fate to adopt an endoderm fate.", Added definition dbxref GOC:dph to GO:0060799, Added definition dbxref GOC:sdb_2009 to GO:0060799, Added definition dbxref GOC:tb to GO:0060799, Created link GO:0060799 -part_of-> GO:0001714, Created link GO:0060799 -OBO_REL:is_a-> GO:0060797, Assigned namespace "biological_process" to GO:0060799] * Changed name of GO:0060799 from "null" to "transforming growth factor beta receptor signaling pathway involved in endodermal cell fate specification" * Set definition of GO:0060799 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the commitment of an unspecified fate to adopt an endoderm fate." * Added definition dbxref GOC:dph to GO:0060799 * Added definition dbxref GOC:sdb_2009 to GO:0060799 * Added definition dbxref GOC:tb to GO:0060799 * Created link GO:0060799 -part_of-> GO:0001714 * Created link GO:0060799 -OBO_REL:is_a-> GO:0060797 * Assigned namespace "biological_process" to GO:0060799 * [Changed name of GO:0060800 from "null" to "regulation of cell differentiation involved in embryonic placenta development", Set definition of GO:0060800 to "Any process that modulates the rate, frequency or extent of cell differentiation that contributes to the progression of the placenta over time, from its initial condition to its mature state.", Added definition dbxref GOC:dph to GO:0060800, Added definition dbxref GOC:sdb_2009 to GO:0060800, Added definition dbxref GOC:tb to GO:0060800, Created link GO:0060800 -regulates-> GO:0060706, Created link GO:0060800 -OBO_REL:is_a-> GO:0045595, Assigned namespace "biological_process" to GO:0060800] * Changed name of GO:0060800 from "null" to "regulation of cell differentiation involved in embryonic placenta development" * Set definition of GO:0060800 to "Any process that modulates the rate, frequency or extent of cell differentiation that contributes to the progression of the placenta over time, from its initial condition to its mature state." * Added definition dbxref GOC:dph to GO:0060800 * Added definition dbxref GOC:sdb_2009 to GO:0060800 * Added definition dbxref GOC:tb to GO:0060800 * Created link GO:0060800 -regulates-> GO:0060706 * Created link GO:0060800 -OBO_REL:is_a-> GO:0045595 * Assigned namespace "biological_process" to GO:0060800 * [Changed name of GO:0060801 from "null" to "negative regulation of trophoblast cell differentiation by transforming growth factor beta signaling pathway", Set definition of GO:0060801 to "The transforming growth factor signaling process that decreases the rate, frequency, or extent of trophoblast stem cells differentiating into the more mature cells of the trophoblast.", Added definition dbxref GOC:dph to GO:0060801, Added definition dbxref GOC:sdb_2009 to GO:0060801, Added definition dbxref GOC:tb to GO:0060801, Created link GO:0060801 -OBO_REL:is_a-> GO:0060806, Assigned namespace "biological_process" to GO:0060801] * Changed name of GO:0060801 from "null" to "negative regulation of trophoblast cell differentiation by transforming growth factor beta signaling pathway" * Set definition of GO:0060801 to "The transforming growth factor signaling process that decreases the rate, frequency, or extent of trophoblast stem cells differentiating into the more mature cells of the trophoblast." * Added definition dbxref GOC:dph to GO:0060801 * Added definition dbxref GOC:sdb_2009 to GO:0060801 * Added definition dbxref GOC:tb to GO:0060801 * Created link GO:0060801 -OBO_REL:is_a-> GO:0060806 * Assigned namespace "biological_process" to GO:0060801 * [Changed name of GO:0060802 from "null" to "epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification", Set definition of GO:0060802 to "Any process that mediates the transfer of information from an epiblast cell to an extraembryonic ectoderm cell that contributes to the specification of the anterior/posterior axis.", Added definition dbxref GOC:dph to GO:0060802, Added definition dbxref GOC:sdb_2009 to GO:0060802, Added definition dbxref GOC:tb to GO:0060802, Created link GO:0060802 -part_of-> GO:0009948, Created link GO:0060802 -OBO_REL:is_a-> GO:0007267, Assigned namespace "biological_process" to GO:0060802] * Changed name of GO:0060802 from "null" to "epiblast cell-extraembryonic ectoderm cell signaling involved in anterior/posterior axis specification" * Set definition of GO:0060802 to "Any process that mediates the transfer of information from an epiblast cell to an extraembryonic ectoderm cell that contributes to the specification of the anterior/posterior axis." * Added definition dbxref GOC:dph to GO:0060802 * Added definition dbxref GOC:sdb_2009 to GO:0060802 * Added definition dbxref GOC:tb to GO:0060802 * Created link GO:0060802 -part_of-> GO:0009948 * Created link GO:0060802 -OBO_REL:is_a-> GO:0007267 * Assigned namespace "biological_process" to GO:0060802 * [Changed name of GO:0060803 from "null" to "BMP signaling pathway involved in mesodermal cell fate specification", Set definition of GO:0060803 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor and ultimately resulting in an cell becoming specified to adopt a mesodermal fate.", Added definition dbxref GOC:dph to GO:0060803, Added definition dbxref GOC:sdb_2009 to GO:0060803, Added definition dbxref GOC:tb to GO:0060803, Created link GO:0060803 -OBO_REL:is_a-> GO:0030509, Created link GO:0060803 -part_of-> GO:0007501, Assigned namespace "biological_process" to GO:0060803] * Changed name of GO:0060803 from "null" to "BMP signaling pathway involved in mesodermal cell fate specification" * Set definition of GO:0060803 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor and ultimately resulting in an cell becoming specified to adopt a mesodermal fate." * Added definition dbxref GOC:dph to GO:0060803 * Added definition dbxref GOC:sdb_2009 to GO:0060803 * Added definition dbxref GOC:tb to GO:0060803 * Created link GO:0060803 -OBO_REL:is_a-> GO:0030509 * Created link GO:0060803 -part_of-> GO:0007501 * Assigned namespace "biological_process" to GO:0060803 * [Changed name of GO:0060804 from "null" to "positive regulation of WNT receptor signaling pathway by BMP signaling pathway", Set definition of GO:0060804 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in an increase inthe rate, frequency or extent of a WNT receptor signaling pathway.", Added definition dbxref GOC:dph to GO:0060804, Added definition dbxref GOC:sdb_2009 to GO:0060804, Added definition dbxref GOC:tb to GO:0060804, Created link GO:0060804 -OBO_REL:is_a-> GO:0030509, Created link GO:0060804 -OBO_REL:is_a-> GO:0030177, Assigned namespace "biological_process" to GO:0060804] * Changed name of GO:0060804 from "null" to "positive regulation of WNT receptor signaling pathway by BMP signaling pathway" * Set definition of GO:0060804 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in an increase inthe rate, frequency or extent of a WNT receptor signaling pathway." * Added definition dbxref GOC:dph to GO:0060804 * Added definition dbxref GOC:sdb_2009 to GO:0060804 * Added definition dbxref GOC:tb to GO:0060804 * Created link GO:0060804 -OBO_REL:is_a-> GO:0030509 * Created link GO:0060804 -OBO_REL:is_a-> GO:0030177 * Assigned namespace "biological_process" to GO:0060804 * [Changed name of GO:0060805 from "null" to "negative regulation of trophoblast cell differentiation by transcription regulation from RNA polymerase II promoter", Set definition of GO:0060805 to "Any process that modulates the rate, frequency or extent of transcription from an RNA polymerase II promoter ultimately resulting in a decrease in trophoblast stem cells differentiating into the more mature cells of the trophoblast.", Added definition dbxref GOC:dph to GO:0060805, Added definition dbxref GOC:sdb_2009 to GO:0060805, Added definition dbxref GOC:tb to GO:0060805, Created link GO:0060805 -OBO_REL:is_a-> GO:0060806, Assigned namespace "biological_process" to GO:0060805] * Changed name of GO:0060805 from "null" to "negative regulation of trophoblast cell differentiation by transcription regulation from RNA polymerase II promoter" * Set definition of GO:0060805 to "Any process that modulates the rate, frequency or extent of transcription from an RNA polymerase II promoter ultimately resulting in a decrease in trophoblast stem cells differentiating into the more mature cells of the trophoblast." * Added definition dbxref GOC:dph to GO:0060805 * Added definition dbxref GOC:sdb_2009 to GO:0060805 * Added definition dbxref GOC:tb to GO:0060805 * Created link GO:0060805 -OBO_REL:is_a-> GO:0060806 * Assigned namespace "biological_process" to GO:0060805 * [Changed name of GO:0060806 from "null" to "negative regulation of cell differentiation involved in embryonic placenta development", Set definition of GO:0060806 to "Any process that decreases the rate, frequency or extent of cell differentiation that contributes to the progression of the placenta over time, from its initial condition to its mature state.", Added definition dbxref GOC:dph to GO:0060806, Added definition dbxref GOC:sdb_2009 to GO:0060806, Added definition dbxref GOC:tb to GO:0060806, Created link GO:0060806 -OBO_REL:is_a-> GO:0060800, Created link GO:0060806 -negatively_regulates-> GO:0060706, Created link GO:0060806 -OBO_REL:is_a-> GO:0045596, Assigned namespace "biological_process" to GO:0060806] * Changed name of GO:0060806 from "null" to "negative regulation of cell differentiation involved in embryonic placenta development" * Set definition of GO:0060806 to "Any process that decreases the rate, frequency or extent of cell differentiation that contributes to the progression of the placenta over time, from its initial condition to its mature state." * Added definition dbxref GOC:dph to GO:0060806 * Added definition dbxref GOC:sdb_2009 to GO:0060806 * Added definition dbxref GOC:tb to GO:0060806 * Created link GO:0060806 -OBO_REL:is_a-> GO:0060800 * Created link GO:0060806 -negatively_regulates-> GO:0060706 * Created link GO:0060806 -OBO_REL:is_a-> GO:0045596 * Assigned namespace "biological_process" to GO:0060806 * [Changed name of GO:0060807 from "null" to "regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification", Set definition of GO:0060807 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that ultimately results in a cell being specified to adopt a definitive endodermal cell fate.", Added definition dbxref GOC:dph to GO:0060807, Added definition dbxref GOC:sdb_2009 to GO:0060807, Added definition dbxref GOC:tb to GO:0060807, Created link GO:0060807 -part_of-> GO:0001714, Created link GO:0060807 -OBO_REL:is_a-> GO:0006357, Assigned namespace "biological_process" to GO:0060807] * Changed name of GO:0060807 from "null" to "regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification" * Set definition of GO:0060807 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that ultimately results in a cell being specified to adopt a definitive endodermal cell fate." * Added definition dbxref GOC:dph to GO:0060807 * Added definition dbxref GOC:sdb_2009 to GO:0060807 * Added definition dbxref GOC:tb to GO:0060807 * Created link GO:0060807 -part_of-> GO:0001714 * Created link GO:0060807 -OBO_REL:is_a-> GO:0006357 * Assigned namespace "biological_process" to GO:0060807 * [Changed name of GO:0060808 from "null" to "positive regulation of mesodermal to mesenchymal transition involved in gastrulation", Set definition of GO:0060808 to "Any process that increases the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition where a mesodermal cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell as part of the process of gastrulation.", Added definition dbxref GOC:dph to GO:0060808, Added definition dbxref GOC:sdb_2009 to GO:0060808, Added definition dbxref GOC:tb to GO:0060808, Created link GO:0060808 -OBO_REL:is_a-> GO:0010718, Created link GO:0060808 -OBO_REL:is_a-> GO:0010470, Created link GO:0060808 -positively_regulates-> GO:0060809, Assigned namespace "biological_process" to GO:0060808] * Changed name of GO:0060808 from "null" to "positive regulation of mesodermal to mesenchymal transition involved in gastrulation" * Set definition of GO:0060808 to "Any process that increases the rate, frequency, or extent of epithelial to mesenchymal transition. Epithelial to mesenchymal transition where a mesodermal cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell as part of the process of gastrulation." * Added definition dbxref GOC:dph to GO:0060808 * Added definition dbxref GOC:sdb_2009 to GO:0060808 * Added definition dbxref GOC:tb to GO:0060808 * Created link GO:0060808 -OBO_REL:is_a-> GO:0010718 * Created link GO:0060808 -OBO_REL:is_a-> GO:0010470 * Created link GO:0060808 -positively_regulates-> GO:0060809 * Assigned namespace "biological_process" to GO:0060808 * [Changed name of GO:0060809 from "null" to "mesodermal to mesenchymal transition involved in gastrulation", Set definition of GO:0060809 to "The epithelial to mesenchymal transition process in which a mesodermal cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell as part of the process of gastrulation.", Added definition dbxref GOC:dph to GO:0060809, Added definition dbxref GOC:sdb_2009 to GO:0060809, Added definition dbxref GOC:tb to GO:0060809, Created link GO:0060809 -OBO_REL:is_a-> GO:0001837, Created link GO:0060809 -part_of-> GO:0007369, Assigned namespace "biological_process" to GO:0060809] * Changed name of GO:0060809 from "null" to "mesodermal to mesenchymal transition involved in gastrulation" * Set definition of GO:0060809 to "The epithelial to mesenchymal transition process in which a mesodermal cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell as part of the process of gastrulation." * Added definition dbxref GOC:dph to GO:0060809 * Added definition dbxref GOC:sdb_2009 to GO:0060809 * Added definition dbxref GOC:tb to GO:0060809 * Created link GO:0060809 -OBO_REL:is_a-> GO:0001837 * Created link GO:0060809 -part_of-> GO:0007369 * Assigned namespace "biological_process" to GO:0060809 * Removing consider replacement GO:0044412 to GO:0001404 * Removing consider replacement GO:0044412 to GO:0007125 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'regulation of development of symbiont in host ; GO:0044127' and 'regulation of growth of symbiont in host ; GO:0044126'." * Changed definition of GO:0033665 from "Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction." to "OBSOLETE. Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Deleted GO:0033665 --regulates--> GO:0044412 * Deleted GO:0033665 --OBO_REL:is_a--> GO:0075338 * org.obo.history.ObsoleteObjectHistoryItem at 77246aab * Adding replacement GO:0044126 to GO:0033665 * Adding replacement GO:0044127 to GO:0033665 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'positive regulation of development of symbiont in host ; GO:0044129' and 'positive regulation of growth of symbiont in host ; GO:0044128'." * Changed definition of GO:0033666 from "Any process by which the symbiont activates, maintains or increases its size or mass or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." to "OBSOLETE. Any process by which the symbiont activates, maintains or increases its size or mass or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Deleted GO:0033666 --positively_regulates--> GO:0044412 * Deleted GO:0033666 --OBO_REL:is_a--> GO:0075339 * Deleted GO:0033666 --OBO_REL:is_a--> GO:0033665 * org.obo.history.ObsoleteObjectHistoryItem at 77d73da8 * Adding replacement GO:0044128 to GO:0033666 * Adding replacement GO:0044129 to GO:0033666 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'negative regulation of development of symbiont in host ; GO:0044131' and 'negative regulation of growth of symbiont in host ; GO:0044130'." * Changed definition of GO:0033667 from "Any process by which the symbiont stops, prevents or reduces its increase in size or mass or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." to "OBSOLETE. Any process by which the symbiont stops, prevents or reduces its increase in size or mass or its progression from an initial condition to a later condition, within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction." * Deleted GO:0033667 --OBO_REL:is_a--> GO:0075340 * Deleted GO:0033667 --negatively_regulates--> GO:0044412 * Deleted GO:0033667 --OBO_REL:is_a--> GO:0033665 * org.obo.history.ObsoleteObjectHistoryItem at 54111e0f * Adding replacement GO:0044130 to GO:0033667 * Adding replacement GO:0044131 to GO:0033667 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'growth of symbiont on or near host ; GO:0044133' and 'development of symbiont on or near host ; GO:0044132'." * Changed definition of GO:0044408 from "Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, within the cells or tissues of the host organism." to "OBSOLETE. Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, within the cells or tissues of the host organism." * Deleted GO:0044408 --OBO_REL:is_a--> GO:0051827 * Deleted GO:0044408 --OBO_REL:is_a--> GO:0052108 * org.obo.history.ObsoleteObjectHistoryItem at 2fcc95e7 * Adding replacement GO:0044132 to GO:0044408 * Adding replacement GO:0044133 to GO:0044408 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'development of symbiont in host ; GO:0044114' and 'growth of symbiont in host ; GO:0044117'." * Changed definition of GO:0044412 from "The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of the host organism. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down host tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0044412 --OBO_REL:is_a--> GO:0052108 * Deleted GO:0044412 --OBO_REL:is_a--> GO:0051831 * org.obo.history.ObsoleteObjectHistoryItem at 20858935 * Adding replacement GO:0044117 to GO:0044412 * Adding replacement GO:0044114 to GO:0044412 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'growth on or near surface of other organism during symbiotic interaction ; GO:0044153' and 'development on or near surface of other organism during symbiotic interaction ; GO:0044152'." * Changed definition of GO:0051827 from "The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of a second organism, where the two organisms are in a symbiotic interaction." * Deleted GO:0051827 --OBO_REL:is_a--> GO:0052171 * org.obo.history.ObsoleteObjectHistoryItem at 1ef30741 * Adding replacement GO:0044152 to GO:0051827 * Adding replacement GO:0044153 to GO:0051827 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'growth in other organism during symbiotic interaction ; GO:0044112' and 'development in other organism during symbiotic interaction ; GO:0044113'." * Changed definition of GO:0051831 from "The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism." to "OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring within the cells or tissues of a second organism, where the two organisms are in a symbiotic interaction. This may (but not necessarily) include a filamentous growth form, and also can include secretion of proteases and lipases to break down the tissue of the second organism." * Deleted GO:0051831 --OBO_REL:is_a--> GO:0052171 * org.obo.history.ObsoleteObjectHistoryItem at 65614c46 * Adding replacement GO:0044112 to GO:0051831 * Adding replacement GO:0044113 to GO:0051831 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'growth of organism on or near symbiont surface ; GO:0044151' and 'development of organism on or near symbiont surface ; GO:0044150'." * Changed definition of GO:0051857 from "The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring on or near the exterior of its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction." * Deleted GO:0051857 --OBO_REL:is_a--> GO:0051702 * Deleted GO:0051857 --OBO_REL:is_a--> GO:0051827 * org.obo.history.ObsoleteObjectHistoryItem at 56d6bba9 * Adding replacement GO:0044150 to GO:0051857 * Adding replacement GO:0044151 to GO:0051857 * Deleted GO:0052093 --OBO_REL:is_a--> GO:0052108 * Created link GO:0052093 -OBO_REL:is_a-> GO:0044115 * Deleted GO:0052094 --OBO_REL:is_a--> GO:0075065 * Created link GO:0052094 -OBO_REL:is_a-> GO:0044118 * Deleted GO:0052095 --OBO_REL:is_a--> GO:0052171 * Created link GO:0052095 -OBO_REL:is_a-> GO:0044111 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'growth of symbiont during interaction with host ; GO:0044116' and 'development of symbiont during interaction with host ; GO:0044115'." * Changed definition of GO:0052108 from "The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0052108 --OBO_REL:is_a--> GO:0052171 * Deleted GO:0052108 --part_of--> GO:0051701 * org.obo.history.ObsoleteObjectHistoryItem at 2bba80c9 * Adding replacement GO:0044116 to GO:0052108 * Adding replacement GO:0044115 to GO:0052108 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'development during symbiotic interaction ; GO:0044111' and 'growth during symbiotic interaction ; GO:0044110'." * Changed definition of GO:0052171 from "The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction." * Deleted GO:0052171 --OBO_REL:is_a--> GO:0044419 * Deleted GO:0052171 --part_of--> GO:0044403 * org.obo.history.ObsoleteObjectHistoryItem at 615d228c * Adding replacement GO:0044110 to GO:0052171 * Adding replacement GO:0044111 to GO:0052171 * Deleted GO:0075005 --OBO_REL:is_a--> GO:0044408 * Created link GO:0075005 -OBO_REL:is_a-> GO:0044132 * Deleted GO:0075006 --OBO_REL:is_a--> GO:0075305 * Created link GO:0075006 -OBO_REL:is_a-> GO:0044138 * Deleted GO:0075007 --OBO_REL:is_a--> GO:0075337 * Created link GO:0075007 -OBO_REL:is_a-> GO:0044143 * Deleted GO:0075008 --OBO_REL:is_a--> GO:0075309 * Created link GO:0075008 -OBO_REL:is_a-> GO:0044141 * Deleted GO:0075009 --OBO_REL:is_a--> GO:0044408 * Created link GO:0075009 -OBO_REL:is_a-> GO:0044132 * Changed comment from "Note that this term is used to annotate gene products of the symbiont." to "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'growth of symbiont on or near host phyllosphere ; GO:0044135' and 'development of symbiont on or near host phyllosphere ; GO:0044134'." * Changed definition of GO:0075013 from "The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring on or near its host phyllosphere. The host phyllosphere is defined as total above-ground surfaces of a plant as a habitat for symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0075013 --OBO_REL:is_a--> GO:0044408 * org.obo.history.ObsoleteObjectHistoryItem at 29874744 * Adding replacement GO:0044135 to GO:0075013 * Adding replacement GO:0044134 to GO:0075013 * Changed comment from "Note that this term is used to annotate gene products of the symbiont." to "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'growth of symbiont on or near host rhizosphere ; GO:0044137' and 'development of symbiont on or near host rhizosphere ; GO:0044136'." * Changed definition of GO:0075014 from "The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0075014 --OBO_REL:is_a--> GO:0044408 * org.obo.history.ObsoleteObjectHistoryItem at 7057d6a8 * Adding replacement GO:0044136 to GO:0075014 * Adding replacement GO:0044137 to GO:0075014 * Deleted GO:0075015 --OBO_REL:is_a--> GO:0052108 * Created link GO:0075015 -OBO_REL:is_a-> GO:0044115 * Deleted GO:0075016 --OBO_REL:is_a--> GO:0075013 * Created link GO:0075016 -OBO_REL:is_a-> GO:0044134 * Deleted GO:0075017 --OBO_REL:is_a--> GO:0075305 * Created link GO:0075017 -OBO_REL:is_a-> GO:0044138 * Deleted GO:0075018 --OBO_REL:is_a--> GO:0075337 * Created link GO:0075018 -OBO_REL:is_a-> GO:0044143 * Deleted GO:0075019 --OBO_REL:is_a--> GO:0075309 * Created link GO:0075019 -OBO_REL:is_a-> GO:0044141 * Deleted GO:0075033 --OBO_REL:is_a--> GO:0044408 * Created link GO:0075033 -OBO_REL:is_a-> GO:0044132 * Deleted GO:0075035 --OBO_REL:is_a--> GO:0052108 * Created link GO:0075035 -OBO_REL:is_a-> GO:0044115 * Deleted GO:0075039 --OBO_REL:is_a--> GO:0052108 * Created link GO:0075039 -OBO_REL:is_a-> GO:0044115 * Deleted GO:0075045 --OBO_REL:is_a--> GO:0033665 * Created link GO:0075045 -OBO_REL:is_a-> GO:0044127 * Deleted GO:0075046 --OBO_REL:is_a--> GO:0033666 * Created link GO:0075046 -OBO_REL:is_a-> GO:0044129 * Deleted GO:0075047 --OBO_REL:is_a--> GO:0033667 * Created link GO:0075047 -OBO_REL:is_a-> GO:0044131 * Deleted GO:0075054 --OBO_REL:is_a--> GO:0075338 * Created link GO:0075054 -OBO_REL:is_a-> GO:0044145 * Deleted GO:0075055 --OBO_REL:is_a--> GO:0075339 * Created link GO:0075055 -OBO_REL:is_a-> GO:0044149 * Deleted GO:0075056 --OBO_REL:is_a--> GO:0075340 * Created link GO:0075056 -OBO_REL:is_a-> GO:0044147 * Deleted GO:0075061 --OBO_REL:is_a--> GO:0044412 * Created link GO:0075061 -OBO_REL:is_a-> GO:0044114 * Deleted GO:0075062 --OBO_REL:is_a--> GO:0033665 * Created link GO:0075062 -OBO_REL:is_a-> GO:0044127 * Deleted GO:0075063 --OBO_REL:is_a--> GO:0033666 * Created link GO:0075063 -OBO_REL:is_a-> GO:0044129 * Deleted GO:0075064 --OBO_REL:is_a--> GO:0033667 * Created link GO:0075064 -OBO_REL:is_a-> GO:0044131 * Changed comment from "Note that this term is used to annotate gene products of the symbiont." to "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'development of symbiont in host cell ; GO:0044118' and 'growth of symbiont in host cell ; GO:0044119'." * Changed definition of GO:0075065 from "The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's cell. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0075065 --OBO_REL:is_a--> GO:0044412 * org.obo.history.ObsoleteObjectHistoryItem at 16cde937 * Adding replacement GO:0044118 to GO:0075065 * Adding replacement GO:0044119 to GO:0075065 * Changed comment from "Note that this term is used to annotate gene products of the symbiont." to "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'development of symbiont in host organelle ; GO:0044120' and 'growth of symbiont in host organelle ; GO:0044121'." * Changed definition of GO:0075066 from "The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's organelle. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0075066 --OBO_REL:is_a--> GO:0075065 * org.obo.history.ObsoleteObjectHistoryItem at 288a2593 * Adding replacement GO:0044120 to GO:0075066 * Adding replacement GO:0044121 to GO:0075066 * Changed comment from "Note that this term is used to annotate gene products of the symbiont." to "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'development during symbiotic interaction ; GO:0044111' and 'growth of symbiont in host intercellular space ; GO:0044125'." * Changed definition of GO:0075067 from "The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's intercellular space. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's intercellular space. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0075067 --OBO_REL:is_a--> GO:0044412 * org.obo.history.ObsoleteObjectHistoryItem at 5a8eab0 * Adding replacement GO:0044125 to GO:0075067 * Adding replacement GO:0044124 to GO:0075067 * Changed comment from "Note that this term is used to annotate gene products of the symbiont." to "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'development of symbiont in host vascular tissue ; GO:0044122' and 'growth of symbiont in host vascular tissue ; GO:0044123'." * Changed definition of GO:0075068 from "The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." to "OBSOLETE. The increase in size or mass of symbiont, or the progression of the symbiont from an initial condition to a later condition, occurring in its host's vascular tissue. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Deleted GO:0075068 --OBO_REL:is_a--> GO:0044412 * org.obo.history.ObsoleteObjectHistoryItem at 14c7cbb7 * Adding replacement GO:0044123 to GO:0075068 * Adding replacement GO:0044122 to GO:0075068 * Deleted GO:0075185 --OBO_REL:is_a--> GO:0075339 * Created link GO:0075185 -OBO_REL:is_a-> GO:0044149 * Deleted GO:0075186 --OBO_REL:is_a--> GO:0075340 * Created link GO:0075186 -OBO_REL:is_a-> GO:0044147 * Deleted GO:0075188 --OBO_REL:is_a--> GO:0075305 * Created link GO:0075188 -OBO_REL:is_a-> GO:0044138 * Deleted GO:0075189 --OBO_REL:is_a--> GO:0075337 * Created link GO:0075189 -OBO_REL:is_a-> GO:0044143 * Deleted GO:0075190 --OBO_REL:is_a--> GO:0075309 * Created link GO:0075190 -OBO_REL:is_a-> GO:0044141 * Deleted GO:0075193 --OBO_REL:is_a--> GO:0075305 * Created link GO:0075193 -OBO_REL:is_a-> GO:0044138 * Deleted GO:0075194 --OBO_REL:is_a--> GO:0075337 * Created link GO:0075194 -OBO_REL:is_a-> GO:0044143 * Deleted GO:0075195 --OBO_REL:is_a--> GO:0075309 * Created link GO:0075195 -OBO_REL:is_a-> GO:0044141 * Deleted GO:0075198 --OBO_REL:is_a--> GO:0075338 * Created link GO:0075198 -OBO_REL:is_a-> GO:0044145 * Deleted GO:0075199 --OBO_REL:is_a--> GO:0075339 * Created link GO:0075199 -OBO_REL:is_a-> GO:0044149 * Deleted GO:0075200 --OBO_REL:is_a--> GO:0075340 * Created link GO:0075200 -OBO_REL:is_a-> GO:0044147 * Deleted GO:0075202 --OBO_REL:is_a--> GO:0075338 * Created link GO:0075202 -OBO_REL:is_a-> GO:0044145 * Deleted GO:0075203 --OBO_REL:is_a--> GO:0075339 * Created link GO:0075203 -OBO_REL:is_a-> GO:0044149 * Deleted GO:0075204 --OBO_REL:is_a--> GO:0075340 * Created link GO:0075204 -OBO_REL:is_a-> GO:0044147 * Deleted GO:0075214 --OBO_REL:is_a--> GO:0044408 * Created link GO:0075214 -OBO_REL:is_a-> GO:0044132 * Deleted GO:0075215 --OBO_REL:is_a--> GO:0075305 * Created link GO:0075215 -OBO_REL:is_a-> GO:0044138 * Deleted GO:0075216 --OBO_REL:is_a--> GO:0075337 * Created link GO:0075216 -OBO_REL:is_a-> GO:0044143 * Deleted GO:0075217 --OBO_REL:is_a--> GO:0075309 * Created link GO:0075217 -OBO_REL:is_a-> GO:0044141 * Deleted GO:0075222 --OBO_REL:is_a--> GO:0044408 * Created link GO:0075222 -OBO_REL:is_a-> GO:0044132 * Deleted GO:0075223 --OBO_REL:is_a--> GO:0075305 * Created link GO:0075223 -OBO_REL:is_a-> GO:0044138 * Deleted GO:0075224 --OBO_REL:is_a--> GO:0075337 * Created link GO:0075224 -OBO_REL:is_a-> GO:0044143 * Deleted GO:0075225 --OBO_REL:is_a--> GO:0075309 * Created link GO:0075225 -OBO_REL:is_a-> GO:0044141 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'modulation of growth of symbiont on or near host ; GO:0044139' and 'modulation of development of symbiont on or near host ; GO:0044138'." * Changed definition of GO:0075305 from "Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." to "OBSOLETE. Any process by which the symbiont regulates the increase in its size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." * Deleted GO:0075305 --regulates--> GO:0044408 * Deleted GO:0075305 --OBO_REL:is_a--> GO:0075338 * org.obo.history.ObsoleteObjectHistoryItem at 490f6609 * Adding replacement GO:0044139 to GO:0075305 * Adding replacement GO:0044138 to GO:0075305 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'negative regulation of development of symbiont on or near host surface ; GO:0044141' and 'negative regulation of growth of symbiont on or near host surface ; GO:0044140'." * Changed definition of GO:0075309 from "Any process that stops, prevents or reduces the frequency, rate or extent of the increase in the symbiont's size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." to "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of the increase in the symbiont's size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." * Deleted GO:0075309 --OBO_REL:is_a--> GO:0075340 * Deleted GO:0075309 --OBO_REL:is_a--> GO:0075305 * Deleted GO:0075309 --negatively_regulates--> GO:0044408 * org.obo.history.ObsoleteObjectHistoryItem at 11f3fe58 * Adding replacement GO:0044140 to GO:0075309 * Adding replacement GO:0044141 to GO:0075309 * Deleted GO:0075329 --OBO_REL:is_a--> GO:0075338 * Created link GO:0075329 -OBO_REL:is_a-> GO:0044145 * Deleted GO:0075330 --OBO_REL:is_a--> GO:0075339 * Created link GO:0075330 -OBO_REL:is_a-> GO:0044149 * Deleted GO:0075331 --OBO_REL:is_a--> GO:0075340 * Created link GO:0075331 -OBO_REL:is_a-> GO:0044147 * Changed comment from "Note that this term is used to annotate gene products of the symbiont. To annotate host gene products, consider the biological process term "negative regulation by host of symbiont adenylate cyclase-mediated signal transduction; GO:0075334"." to "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'positive regulation of development of symbiont on or near host surface ; GO:0044143' and 'positive regulation of growth of symbiont on or near host surface ; GO:0044142'." * Changed definition of GO:0075337 from "Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." to "OBSOLETE. Any process that activates or increases the frequency, rate or extent of the symbiont's increase in size or mass, or its progression from an initial condition to a later condition, on or near the cells or tissues of the host organism." * Deleted GO:0075337 --positively_regulates--> GO:0044408 * Deleted GO:0075337 --OBO_REL:is_a--> GO:0075335 * Deleted GO:0075337 --OBO_REL:is_a--> GO:0075339 * Deleted GO:0075337 --OBO_REL:is_a--> GO:0075305 * org.obo.history.ObsoleteObjectHistoryItem at 29bf4c9d * Adding replacement GO:0044142 to GO:0075337 * Adding replacement GO:0044143 to GO:0075337 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'modulation of development of symbiont during interaction with host ; GO:0044145' and 'modulation of growth of symbiont during interaction with host ; GO:0044144'." * Changed definition of GO:0075338 from "Any process that modulates the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." to "OBSOLETE. Any process that modulates the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." * Deleted GO:0075338 --regulates--> GO:0052108 * Deleted GO:0075338 --OBO_REL:is_a--> GO:0043903 * org.obo.history.ObsoleteObjectHistoryItem at 4e3eecd4 * Adding replacement GO:0044144 to GO:0075338 * Adding replacement GO:0044145 to GO:0075338 * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'positive regulation of development of symbiont during interaction with host ; GO:0044149' and 'positive regulation of growth of symbiont during interaction with host ; GO:0044148'." * Changed definition of GO:0075339 from "Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." to "OBSOLETE. Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." * Deleted GO:0075339 --OBO_REL:is_a--> GO:0075338 * Deleted GO:0075339 --OBO_REL:is_a--> GO:0043902 * Deleted GO:0075339 --positively_regulates--> GO:0052108 * org.obo.history.ObsoleteObjectHistoryItem at 52e7a6e * Added comment "This term was made obsolete because it contained a conjunction (or). It has been replaced with the terms 'negative regulation of development of symbiont during interaction with host ; GO:0044147' and 'negative regulation of growth of symbiont during interaction with host ; GO:0044146'." * Changed definition of GO:0075340 from "Any process that stops, prevents or reduces the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." to "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism." * Deleted GO:0075340 --OBO_REL:is_a--> GO:0043901 * Deleted GO:0075340 --negatively_regulates--> GO:0052108 * Deleted GO:0075340 --OBO_REL:is_a--> GO:0075338 * org.obo.history.ObsoleteObjectHistoryItem at 2e67ce6a * Adding replacement GO:0044147 to GO:0075340 * Adding replacement GO:0044146 to GO:0075340 From gocvs at genome.stanford.edu Fri Aug 7 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 7 Aug 2009 21:30:13 -0700 Subject: [Go-diff] GO update 08/07/2009 Message-ID: <200908080430.n784UDWI024818@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.734 by 1.737 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060810 * Created object of type obo:TERM with id GO:0060811 * Created object of type obo:TERM with id GO:0060812 * Created object of type obo:TERM with id GO:0060813 * Created object of type obo:TERM with id GO:0060814 * Created object of type obo:TERM with id GO:0060815 * Created object of type obo:TERM with id GO:0070851 * Created object of type obo:TERM with id GO:0090046 * Created object of type obo:TERM with id GO:0090047 * Created object of type obo:TERM with id GO:0090048 * Created object of type obo:TERM with id GO:0090049 * Created object of type obo:TERM with id GO:0090050 * Created object of type obo:TERM with id GO:0090051 * Created object of type obo:TERM with id GO:0090052 * Created object of type obo:TERM with id GO:0090053 * Created object of type obo:TERM with id GO:0090054 * Created object of type obo:TERM with id GO:0090055 * Created object of type obo:TERM with id GO:0090056 * [Changed name of GO:0060810 from "null" to "intracellular mRNA localization involved in pattern specification process", Set definition of GO:0060810 to "Any process by which mRNA is transported to, or maintained in, a specific location within an oocyte that results in a pattern being established in the embryo.", Added definition dbxref GOC:dph to GO:0060810, Added definition dbxref GOC:sdb_2009 to GO:0060810, Added definition dbxref GOC:tb to GO:0060810, Created link GO:0060810 -OBO_REL:is_a-> GO:0008298, Created link GO:0060810 -part_of-> GO:0007389, Assigned namespace "biological_process" to GO:0060810] * Changed name of GO:0060810 from "null" to "intracellular mRNA localization involved in pattern specification process" * Set definition of GO:0060810 to "Any process by which mRNA is transported to, or maintained in, a specific location within an oocyte that results in a pattern being established in the embryo." * Added definition dbxref GOC:dph to GO:0060810 * Added definition dbxref GOC:sdb_2009 to GO:0060810 * Added definition dbxref GOC:tb to GO:0060810 * Created link GO:0060810 -OBO_REL:is_a-> GO:0008298 * Created link GO:0060810 -part_of-> GO:0007389 * Assigned namespace "biological_process" to GO:0060810 * [Changed name of GO:0060811 from "null" to "intracellular mRNA localization involved in anterior/posterior axis specification", Set definition of GO:0060811 to "Any process by which mRNA is transported to, or maintained in, a specific location within the oocyte and/or syncytial embryo that contributes to the specification of the anterior/posterior axis.", Added definition dbxref GOC:dph to GO:0060811, Added definition dbxref GOC:sdb_2009 to GO:0060811, Added definition dbxref GOC:tb to GO:0060811, Created link GO:0060811 -part_of-> GO:0009948, Created link GO:0060811 -OBO_REL:is_a-> GO:0060810, Assigned namespace "biological_process" to GO:0060811] * Changed name of GO:0060811 from "null" to "intracellular mRNA localization involved in anterior/posterior axis specification" * Set definition of GO:0060811 to "Any process by which mRNA is transported to, or maintained in, a specific location within the oocyte and/or syncytial embryo that contributes to the specification of the anterior/posterior axis." * Added definition dbxref GOC:dph to GO:0060811 * Added definition dbxref GOC:sdb_2009 to GO:0060811 * Added definition dbxref GOC:tb to GO:0060811 * Created link GO:0060811 -part_of-> GO:0009948 * Created link GO:0060811 -OBO_REL:is_a-> GO:0060810 * Assigned namespace "biological_process" to GO:0060811 * [Changed name of GO:0060812 from "null" to "orthodenticle mRNA localization", Set definition of GO:0060812 to "Any process by which orthodenticle mRNA is transported to and maintained in the oocyte and/or syncytial embryo as part of the process that will specify the anterior/posterior axis.", Added definition dbxref GOC:dph to GO:0060812, Added definition dbxref GOC:sdb_2009 to GO:0060812, Added definition dbxref GOC:tb to GO:0060812, Created link GO:0060812 -OBO_REL:is_a-> GO:0060811, Assigned namespace "biological_process" to GO:0060812] * Changed name of GO:0060812 from "null" to "orthodenticle mRNA localization" * Set definition of GO:0060812 to "Any process by which orthodenticle mRNA is transported to and maintained in the oocyte and/or syncytial embryo as part of the process that will specify the anterior/posterior axis." * Added definition dbxref GOC:dph to GO:0060812 * Added definition dbxref GOC:sdb_2009 to GO:0060812 * Added definition dbxref GOC:tb to GO:0060812 * Created link GO:0060812 -OBO_REL:is_a-> GO:0060811 * Assigned namespace "biological_process" to GO:0060812 * [Changed name of GO:0060813 from "null" to "anterior mRNA localization involved in anterior/posterior axis specification", Set definition of GO:0060813 to "Any process by which a mRNA is transported to, and maintained in the anterior portion of the oocyte and/or syncytial embryo contributing to the specification of the anterior/posterior axis.", Added definition dbxref GOC:dph to GO:0060813, Added definition dbxref GOC:sdb_2009 to GO:0060813, Added definition dbxref GOC:tb to GO:0060813, Created link GO:0060813 -OBO_REL:is_a-> GO:0060811, Assigned namespace "biological_process" to GO:0060813] * Changed name of GO:0060813 from "null" to "anterior mRNA localization involved in anterior/posterior axis specification" * Set definition of GO:0060813 to "Any process by which a mRNA is transported to, and maintained in the anterior portion of the oocyte and/or syncytial embryo contributing to the specification of the anterior/posterior axis." * Added definition dbxref GOC:dph to GO:0060813 * Added definition dbxref GOC:sdb_2009 to GO:0060813 * Added definition dbxref GOC:tb to GO:0060813 * Created link GO:0060813 -OBO_REL:is_a-> GO:0060811 * Assigned namespace "biological_process" to GO:0060813 * [Changed name of GO:0060814 from "null" to "posterior mRNA localization involved in anterior/posterior axis specification", Set definition of GO:0060814 to "Any process by which a mRNA is transported to and maintained in the oocyte and/or syncytial embryo contributing to the specification of the anterior/posterior axis.", Added definition dbxref GOC:dph to GO:0060814, Added definition dbxref GOC:sdb_2009 to GO:0060814, Added definition dbxref GOC:tb to GO:0060814, Created link GO:0060814 -OBO_REL:is_a-> GO:0060811, Assigned namespace "biological_process" to GO:0060814] * Changed name of GO:0060814 from "null" to "posterior mRNA localization involved in anterior/posterior axis specification" * Set definition of GO:0060814 to "Any process by which a mRNA is transported to and maintained in the oocyte and/or syncytial embryo contributing to the specification of the anterior/posterior axis." * Added definition dbxref GOC:dph to GO:0060814 * Added definition dbxref GOC:sdb_2009 to GO:0060814 * Added definition dbxref GOC:tb to GO:0060814 * Created link GO:0060814 -OBO_REL:is_a-> GO:0060811 * Assigned namespace "biological_process" to GO:0060814 * [Changed name of GO:0060815 from "null" to "regulation of translation involved in anterior/posterior axis specification", Set definition of GO:0060815 to "Any process that modulates the frequency, rate or extent of translation of mRNAs that contribute to the specification of the anterior/posterior axis.", Added definition dbxref GOC:dph to GO:0060815, Added definition dbxref GOC:sdb_2009 to GO:0060815, Added definition dbxref GOC:tb to GO:0060815, Created link GO:0060815 -part_of-> GO:0009948, Created link GO:0060815 -OBO_REL:is_a-> GO:0006417, Assigned namespace "biological_process" to GO:0060815] * Changed name of GO:0060815 from "null" to "regulation of translation involved in anterior/posterior axis specification" * Set definition of GO:0060815 to "Any process that modulates the frequency, rate or extent of translation of mRNAs that contribute to the specification of the anterior/posterior axis." * Added definition dbxref GOC:dph to GO:0060815 * Added definition dbxref GOC:sdb_2009 to GO:0060815 * Added definition dbxref GOC:tb to GO:0060815 * Created link GO:0060815 -part_of-> GO:0009948 * Created link GO:0060815 -OBO_REL:is_a-> GO:0006417 * Assigned namespace "biological_process" to GO:0060815 * [Changed name of GO:0070851 from "null" to "growth factor receptor binding", Set definition of GO:0070851 to "Interacting selectively with a growth factor receptor.", Added definition dbxref GOC:mah to GO:0070851, Created link GO:0070851 -OBO_REL:is_a-> GO:0005102, Assigned namespace "molecular_function" to GO:0070851] * Changed name of GO:0070851 from "null" to "growth factor receptor binding" * Set definition of GO:0070851 to "Interacting selectively with a growth factor receptor." * Added definition dbxref GOC:mah to GO:0070851 * Created link GO:0070851 -OBO_REL:is_a-> GO:0005102 * Assigned namespace "molecular_function" to GO:0070851 * [Changed name of GO:0090046 from "null" to "regulation of transcription regulator activity", Set definition of GO:0090046 to "Any process that modulates the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor.", Added definition dbxref GOC:rl to GO:0090046, Created link GO:0090046 -regulates-> GO:0030528, Created link GO:0090046 -OBO_REL:is_a-> GO:0065009, Assigned namespace "biological_process" to GO:0090046] * Changed name of GO:0090046 from "null" to "regulation of transcription regulator activity" * Set definition of GO:0090046 to "Any process that modulates the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor." * Added definition dbxref GOC:rl to GO:0090046 * Created link GO:0090046 -regulates-> GO:0030528 * Created link GO:0090046 -OBO_REL:is_a-> GO:0065009 * Assigned namespace "biological_process" to GO:0090046 * [Changed name of GO:0090047 from "null" to "positive regulation of transcription regulator activity", Set definition of GO:0090047 to "Any process that increases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor.", Added definition dbxref GOC:rl to GO:0090047, Created link GO:0090047 -positively_regulates-> GO:0030528, Created link GO:0090047 -OBO_REL:is_a-> GO:0044093, Created link GO:0090047 -OBO_REL:is_a-> GO:0090046, Assigned namespace "biological_process" to GO:0090047] * Changed name of GO:0090047 from "null" to "positive regulation of transcription regulator activity" * Set definition of GO:0090047 to "Any process that increases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor." * Added definition dbxref GOC:rl to GO:0090047 * Created link GO:0090047 -positively_regulates-> GO:0030528 * Created link GO:0090047 -OBO_REL:is_a-> GO:0044093 * Created link GO:0090047 -OBO_REL:is_a-> GO:0090046 * Assigned namespace "biological_process" to GO:0090047 * [Changed name of GO:0090048 from "null" to "negative regulation of transcription regulator activity", Set definition of GO:0090048 to "Any process that decreases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor.", Added definition dbxref GOC:rl to GO:0090048, Created link GO:0090048 -OBO_REL:is_a-> GO:0044092, Created link GO:0090048 -negatively_regulates-> GO:0030528, Created link GO:0090048 -OBO_REL:is_a-> GO:0090046, Assigned namespace "biological_process" to GO:0090048] * Changed name of GO:0090048 from "null" to "negative regulation of transcription regulator activity" * Set definition of GO:0090048 to "Any process that decreases the frequency, rate or extent of transcription regulator activity, any molecular function that plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor." * Added definition dbxref GOC:rl to GO:0090048 * Created link GO:0090048 -OBO_REL:is_a-> GO:0044092 * Created link GO:0090048 -negatively_regulates-> GO:0030528 * Created link GO:0090048 -OBO_REL:is_a-> GO:0090046 * Assigned namespace "biological_process" to GO:0090048 * [Changed name of GO:0090049 from "null" to "regulation of cell migration involved in sprouting angiogenesis", Set definition of GO:0090049 to "Any process that modulates the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.", Added definition dbxref GOC:dph to GO:0090049, Added definition dbxref GOC:rl to GO:0090049, Added definition dbxref GOC:tb to GO:0090049, Created link GO:0090049 -regulates-> GO:0002042, Created link GO:0090049 -OBO_REL:is_a-> GO:0045765, Created link GO:0090049 -OBO_REL:is_a-> GO:0010594, Assigned namespace "biological_process" to GO:0090049] * Changed name of GO:0090049 from "null" to "regulation of cell migration involved in sprouting angiogenesis" * Set definition of GO:0090049 to "Any process that modulates the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis." * Added definition dbxref GOC:dph to GO:0090049 * Added definition dbxref GOC:rl to GO:0090049 * Added definition dbxref GOC:tb to GO:0090049 * Created link GO:0090049 -regulates-> GO:0002042 * Created link GO:0090049 -OBO_REL:is_a-> GO:0045765 * Created link GO:0090049 -OBO_REL:is_a-> GO:0010594 * Assigned namespace "biological_process" to GO:0090049 * [Changed name of GO:0090050 from "null" to "positive regulation of cell migration involved in sprouting angiogenesis", Set definition of GO:0090050 to "Any process that increases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.", Added definition dbxref GOC:dph to GO:0090050, Added definition dbxref GOC:rl to GO:0090050, Added definition dbxref GOC:tb to GO:0090050, Created link GO:0090050 -OBO_REL:is_a-> GO:0045766, Created link GO:0090050 -OBO_REL:is_a-> GO:0090049, Created link GO:0090050 -positively_regulates-> GO:0002042, Assigned namespace "biological_process" to GO:0090050] * Changed name of GO:0090050 from "null" to "positive regulation of cell migration involved in sprouting angiogenesis" * Set definition of GO:0090050 to "Any process that increases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis." * Added definition dbxref GOC:dph to GO:0090050 * Added definition dbxref GOC:rl to GO:0090050 * Added definition dbxref GOC:tb to GO:0090050 * Created link GO:0090050 -OBO_REL:is_a-> GO:0045766 * Created link GO:0090050 -OBO_REL:is_a-> GO:0090049 * Created link GO:0090050 -positively_regulates-> GO:0002042 * Assigned namespace "biological_process" to GO:0090050 * [Changed name of GO:0090051 from "null" to "negative regulation of cell migration involved in sprouting angiogenesis", Set definition of GO:0090051 to "Any process that decreases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.", Added definition dbxref GOC:dph to GO:0090051, Added definition dbxref GOC:rl to GO:0090051, Added definition dbxref GOC:tb to GO:0090051, Created link GO:0090051 -negatively_regulates-> GO:0002042, Created link GO:0090051 -OBO_REL:is_a-> GO:0090049, Created link GO:0090051 -OBO_REL:is_a-> GO:0016525, Assigned namespace "biological_process" to GO:0090051] * Changed name of GO:0090051 from "null" to "negative regulation of cell migration involved in sprouting angiogenesis" * Set definition of GO:0090051 to "Any process that decreases the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis." * Added definition dbxref GOC:dph to GO:0090051 * Added definition dbxref GOC:rl to GO:0090051 * Added definition dbxref GOC:tb to GO:0090051 * Created link GO:0090051 -negatively_regulates-> GO:0002042 * Created link GO:0090051 -OBO_REL:is_a-> GO:0090049 * Created link GO:0090051 -OBO_REL:is_a-> GO:0016525 * Assigned namespace "biological_process" to GO:0090051 * [Changed name of GO:0090052 from "null" to "regulation of chromatin silencing at centromere", Set definition of GO:0090052 to "Any process that modulates the frequency, rate or extent of chromatin silencing at the centromere. Chromatin silencing at the centromere is the repression of transcription of centromeric DNA by altering the structure of chromatin.", Added definition dbxref GOC:dph to GO:0090052, Added definition dbxref GOC:tb to GO:0090052, Created link GO:0090052 -OBO_REL:is_a-> GO:0031935, Created link GO:0090052 -regulates-> GO:0030702, Assigned namespace "biological_process" to GO:0090052] * Changed name of GO:0090052 from "null" to "regulation of chromatin silencing at centromere" * Set definition of GO:0090052 to "Any process that modulates the frequency, rate or extent of chromatin silencing at the centromere. Chromatin silencing at the centromere is the repression of transcription of centromeric DNA by altering the structure of chromatin." * Added definition dbxref GOC:dph to GO:0090052 * Added definition dbxref GOC:tb to GO:0090052 * Created link GO:0090052 -OBO_REL:is_a-> GO:0031935 * Created link GO:0090052 -regulates-> GO:0030702 * Assigned namespace "biological_process" to GO:0090052 * [Changed name of GO:0090053 from "null" to "positive regulation of chromatin silencing at centromere", Set definition of GO:0090053 to "Any process that increases the frequency, rate or extent of chromatin silencing at the centromere. Chromatin silencing at the centromere is the repression of transcription of centromeric DNA by altering the structure of chromatin.", Added definition dbxref GOC:dph to GO:0090053, Added definition dbxref GOC:tb to GO:0090053, Created link GO:0090053 -OBO_REL:is_a-> GO:0090052, Created link GO:0090053 -positively_regulates-> GO:0030702, Created link GO:0090053 -OBO_REL:is_a-> GO:0031937, Assigned namespace "biological_process" to GO:0090053] * Changed name of GO:0090053 from "null" to "positive regulation of chromatin silencing at centromere" * Set definition of GO:0090053 to "Any process that increases the frequency, rate or extent of chromatin silencing at the centromere. Chromatin silencing at the centromere is the repression of transcription of centromeric DNA by altering the structure of chromatin." * Added definition dbxref GOC:dph to GO:0090053 * Added definition dbxref GOC:tb to GO:0090053 * Created link GO:0090053 -OBO_REL:is_a-> GO:0090052 * Created link GO:0090053 -positively_regulates-> GO:0030702 * Created link GO:0090053 -OBO_REL:is_a-> GO:0031937 * Assigned namespace "biological_process" to GO:0090053 * [Changed name of GO:0090054 from "null" to "regulation of chromatin silencing at silent mating-type cassette", Set definition of GO:0090054 to "Any process that modulates the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin.", Added definition dbxref GOC:dph to GO:0090054, Added definition dbxref GOC:tb to GO:0090054, Created link GO:0090054 -regulates-> GO:0030466, Created link GO:0090054 -OBO_REL:is_a-> GO:0031935, Assigned namespace "biological_process" to GO:0090054] * Changed name of GO:0090054 from "null" to "regulation of chromatin silencing at silent mating-type cassette" * Set definition of GO:0090054 to "Any process that modulates the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin." * Added definition dbxref GOC:dph to GO:0090054 * Added definition dbxref GOC:tb to GO:0090054 * Created link GO:0090054 -regulates-> GO:0030466 * Created link GO:0090054 -OBO_REL:is_a-> GO:0031935 * Assigned namespace "biological_process" to GO:0090054 * [Changed name of GO:0090055 from "null" to "positive regulation of chromatin silencing at silent mating-type cassette", Set definition of GO:0090055 to "Any process that increases the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin.", Added definition dbxref GOC:dph to GO:0090055, Added definition dbxref GOC:tb to GO:0090055, Created link GO:0090055 -positively_regulates-> GO:0030466, Created link GO:0090055 -OBO_REL:is_a-> GO:0090054, Created link GO:0090055 -OBO_REL:is_a-> GO:0031937, Assigned namespace "biological_process" to GO:0090055] * Changed name of GO:0090055 from "null" to "positive regulation of chromatin silencing at silent mating-type cassette" * Set definition of GO:0090055 to "Any process that increases the frequency, rate, or extent of chromatin silencing at silent mating-type cassette. Chromatin silencing at silent mating-type cassette is the repression of transcription at silent mating-type loci by altering the structure of chromatin." * Added definition dbxref GOC:dph to GO:0090055 * Added definition dbxref GOC:tb to GO:0090055 * Created link GO:0090055 -positively_regulates-> GO:0030466 * Created link GO:0090055 -OBO_REL:is_a-> GO:0090054 * Created link GO:0090055 -OBO_REL:is_a-> GO:0031937 * Assigned namespace "biological_process" to GO:0090055 * [Changed name of GO:0090056 from "null" to "regulation of chlorophyll metabolic process", Set definition of GO:0090056 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chlorophyll.", Added definition dbxref GOC:dph to GO:0090056, Added definition dbxref GOC:tb to GO:0090056, Created link GO:0090056 -OBO_REL:is_a-> GO:0051171, Created link GO:0090056 -OBO_REL:is_a-> GO:0043455, Created link GO:0090056 -regulates-> GO:0015994, Assigned namespace "biological_process" to GO:0090056] * Changed name of GO:0090056 from "null" to "regulation of chlorophyll metabolic process" * Set definition of GO:0090056 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chlorophyll." * Added definition dbxref GOC:dph to GO:0090056 * Added definition dbxref GOC:tb to GO:0090056 * Created link GO:0090056 -OBO_REL:is_a-> GO:0051171 * Created link GO:0090056 -OBO_REL:is_a-> GO:0043455 * Created link GO:0090056 -regulates-> GO:0015994 * Assigned namespace "biological_process" to GO:0090056 * Changed name of GO:0002042 from "cell migration during sprouting angiogenesis" to "cell migration involved in sprouting angiogenesis" * Changed definition of GO:0002042 from "The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels during sprouting angiogenesis." to "The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels involved in sprouting angiogenesis." * Deleted GO:0002112 --OBO_REL:is_a--> GO:0005102 * Created link GO:0002112 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0005104 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005104 -OBO_REL:is_a-> GO:0070851 * Changed name of GO:0005126 from "hematopoietin/interferon-class (D200-domain) cytokine receptor binding" to "cytokine receptor binding" * Set definition of GO:0005126 to "Interacting selectively with a cytokine receptor." * Added definition dbxref GOC:mah to GO:0005126 * Added synonym "hematopoietin/interferon-class (D200-domain) cytokine receptor binding" to GO:0005126 * Added general dbxref GOC:add to synonym hematopoietin/interferon-class (D200-domain) cytokine receptor binding of GO:0005126 * Added general dbxref GOC:mah to synonym hematopoietin/interferon-class (D200-domain) cytokine receptor binding of GO:0005126 * Changed synonym scope of GO:0005126 from "Related" to "Exact" * Deleted GO:0005129 --OBO_REL:is_a--> GO:0008083 * Deleted GO:0005129 --OBO_REL:is_a--> GO:0005128 * Created link GO:0005129 -OBO_REL:is_a-> GO:0005126 * Created link GO:0005129 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005130 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005130 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005134 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005134 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005135 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005135 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005136 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005136 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005137 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005137 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005138 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005138 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005139 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005139 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005140 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005140 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005141 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005141 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005142 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005142 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005143 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005143 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005149 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005149 -OBO_REL:is_a-> GO:0005126 * Created link GO:0005149 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005152 --OBO_REL:is_a--> GO:0005149 * Created link GO:0005152 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0005153 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005153 -OBO_REL:is_a-> GO:0045236 * Deleted GO:0005154 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005154 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005157 --OBO_REL:is_a--> GO:0008083 * Created link GO:0005157 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0005160 --OBO_REL:is_a--> GO:0070696 * Created link GO:0005160 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0005161 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005161 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005165 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005165 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0005171 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005171 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0005172 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005172 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0005173 --OBO_REL:is_a--> GO:0005102 * Created link GO:0005173 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0007308 --part_of--> GO:0048601 * Deleted GO:0007308 --OBO_REL:is_a--> GO:0048532 * Created link GO:0007308 -part_of-> GO:0048599 * Created link GO:0007308 -OBO_REL:is_a-> GO:0048469 * Created link GO:0007314 -part_of-> GO:0008358 * Created link GO:0007317 -OBO_REL:is_a-> GO:0045995 * Deleted GO:0008084 --OBO_REL:is_a--> GO:0008083 * Created link GO:0008084 -OBO_REL:is_a-> GO:0070851 * Created link GO:0008359 -OBO_REL:is_a-> GO:0045995 * Deleted synonym "RubisCO complex" from GO:0009573 * Added synonym "chloroplast RubisCO complex" to GO:0009573 * Changed synonym scope of GO:0009573 from "Related" to "Exact" * Deleted GO:0010271 --OBO_REL:is_a--> GO:0043455 * Created link GO:0010271 -OBO_REL:is_a-> GO:0090056 * Deleted GO:0010380 --OBO_REL:is_a--> GO:0043455 * Created link GO:0010380 -OBO_REL:is_a-> GO:0090056 * Deleted GO:0030116 --OBO_REL:is_a--> GO:0008083 * Created link GO:0030116 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0030372 --OBO_REL:is_a--> GO:0005102 * Created link GO:0030372 -OBO_REL:is_a-> GO:0070851 * Deleted GO:0032003 --OBO_REL:is_a--> GO:0005102 * Created link GO:0032003 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0032813 --OBO_REL:is_a--> GO:0005102 * Created link GO:0032813 -OBO_REL:is_a-> GO:0005126 * Created link GO:0042379 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0044106 --OBO_REL:is_a--> GO:0044262 * Deleted GO:0045237 --OBO_REL:is_a--> GO:0045236 * Created link GO:0045237 -OBO_REL:is_a-> GO:0005153 * Deleted GO:0045238 --OBO_REL:is_a--> GO:0045236 * Created link GO:0045238 -OBO_REL:is_a-> GO:0005153 * Changed definition of GO:0045450 from "Any process by which bicoid mRNA is transported to, or maintained in, a specific location." to "Any process by which bicoid mRNA is transported to and maintained within the oocyte as part of the specification of the anterior/posterior axis." * Deleted GO:0045450 --OBO_REL:is_a--> GO:0008298 * Created link GO:0045450 -OBO_REL:is_a-> GO:0060811 * Deleted GO:0045514 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045514 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045515 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045515 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045516 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045516 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045517 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045517 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045518 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045518 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045519 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045519 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045520 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045520 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045521 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045521 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045522 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045522 -OBO_REL:is_a-> GO:0005126 * Deleted GO:0045523 --OBO_REL:is_a--> GO:0005102 * Created link GO:0045523 -OBO_REL:is_a-> GO:0005126 * Changed definition of GO:0060804 from "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in an increase inthe rate, frequency or extent of a WNT receptor signaling pathway." to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in an increase in the rate, frequency or extent of a WNT receptor signaling pathway." * Deleted GO:0070748 --OBO_REL:is_a--> GO:0005102 * Created link GO:0070748 -OBO_REL:is_a-> GO:0005126 From gocvs at genome.stanford.edu Mon Aug 10 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 10 Aug 2009 21:30:12 -0700 Subject: [Go-diff] GO update 08/10/2009 Message-ID: <200908110430.n7B4UCvR015180@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.737 by 1.738 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created link GO:0010746 -OBO_REL:is_a-> GO:0032890 * Created link GO:0010747 -OBO_REL:is_a-> GO:0032892 * Created link GO:0010748 -OBO_REL:is_a-> GO:0032891 * Created link GO:0010908 -OBO_REL:is_a-> GO:0010559 * Created link GO:0010909 -OBO_REL:is_a-> GO:0010560 * Created link GO:0032303 -OBO_REL:is_a-> GO:0032890 * Created link GO:0032303 -OBO_REL:is_a-> GO:0032368 * Created link GO:0032304 -OBO_REL:is_a-> GO:0032369 * Created link GO:0032304 -OBO_REL:is_a-> GO:0032891 * Created link GO:0032305 -OBO_REL:is_a-> GO:0032370 * Created link GO:0032305 -OBO_REL:is_a-> GO:0032892 * Deleted GO:0034253 --OBO_REL:is_a--> GO:0051172 * Created link GO:0042663 -OBO_REL:is_a-> GO:0010470 * Created link GO:0042665 -OBO_REL:is_a-> GO:0010470 * Created link GO:0045734 -OBO_REL:is_a-> GO:0010565 * Created link GO:0045934 -OBO_REL:is_a-> GO:0051172 * Created link GO:0060782 -OBO_REL:is_a-> GO:0051239 * Created link GO:0060782 -OBO_REL:is_a-> GO:0050793 * Added synonym "positive regulation of posterior neural plate formation by FGF receptor signaling pathway" to GO:0060787 * Added general dbxref GOC:tb to synonym positive regulation of posterior neural plate formation by FGF receptor signaling pathway of GO:0060787 * Added general dbxref GOC:dph to synonym positive regulation of posterior neural plate formation by FGF receptor signaling pathway of GO:0060787 * Created link GO:0060787 -OBO_REL:is_a-> GO:0022603 * Created link GO:0060787 -OBO_REL:is_a-> GO:0051094 * Created link GO:0060787 -OBO_REL:is_a-> GO:0045995 * Created link GO:0060800 -OBO_REL:is_a-> GO:0045995 * Created link GO:0070453 -OBO_REL:is_a-> GO:0051171 * Created link GO:0070454 -OBO_REL:is_a-> GO:0051172 * Created link GO:0070455 -OBO_REL:is_a-> GO:0051173 * Created link GO:0090006 -OBO_REL:is_a-> GO:0010638 * Deleted GO:0090007 --OBO_REL:is_a--> GO:0010564 * Created link GO:0090007 -OBO_REL:is_a-> GO:0007088 * Deleted GO:0090012 --negatively_regulates--> GO:0090009 * Created link GO:0090013 -OBO_REL:is_a-> GO:0010470 * Created link GO:0090015 -OBO_REL:is_a-> GO:0051094 * Created link GO:0090016 -OBO_REL:is_a-> GO:0048831 * Created link GO:0090021 -OBO_REL:is_a-> GO:0051094 * Created link GO:0090021 -OBO_REL:is_a-> GO:0045995 * Created link GO:0090021 -OBO_REL:is_a-> GO:0022603 * Created link GO:0090023 -OBO_REL:is_a-> GO:0002690 * Created link GO:0090024 -OBO_REL:is_a-> GO:0002689 * Created link GO:0090026 -OBO_REL:is_a-> GO:0002690 * Created link GO:0090027 -OBO_REL:is_a-> GO:0002689 From gocvs at genome.stanford.edu Tue Aug 11 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 11 Aug 2009 21:30:12 -0700 Subject: [Go-diff] GO update 08/11/2009 Message-ID: <200908120430.n7C4UClG005711@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.738 by 1.744 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0044154 * Created object of type obo:TERM with id GO:0044155 * Created object of type obo:TERM with id GO:0044156 * Created object of type obo:TERM with id GO:0044157 * Created object of type obo:TERM with id GO:0044158 * Created object of type obo:TERM with id GO:0044159 * Created object of type obo:TERM with id GO:0044160 * Created object of type obo:TERM with id GO:0044161 * Created object of type obo:TERM with id GO:0044162 * Created object of type obo:TERM with id GO:0044163 * Created object of type obo:TERM with id GO:0060816 * Created object of type obo:TERM with id GO:0060817 * Created object of type obo:TERM with id GO:0060818 * Created object of type obo:TERM with id GO:0060819 * Created object of type obo:TERM with id GO:0060820 * Created object of type obo:TERM with id GO:0060821 * Created object of type obo:TERM with id GO:0060822 * Created object of type obo:TERM with id GO:0060823 * Created object of type obo:TERM with id GO:0060824 * Created object of type obo:TERM with id GO:0060825 * Created object of type obo:TERM with id GO:0060826 * Created object of type obo:TERM with id GO:0060827 * Created object of type obo:TERM with id GO:0060828 * Created object of type obo:TERM with id GO:0060829 * Created object of type obo:TERM with id GO:0060830 * Created object of type obo:TERM with id GO:0060831 * Created object of type obo:TERM with id GO:0060832 * Created object of type obo:TERM with id GO:0060833 * Created object of type obo:TERM with id GO:0060834 * Created object of type obo:TERM with id GO:0060835 * Created object of type obo:TERM with id GO:0060836 * Created object of type obo:TERM with id GO:0060837 * Created object of type obo:TERM with id GO:0060838 * Created object of type obo:TERM with id GO:0060839 * Created object of type obo:TERM with id GO:0070852 * Created object of type obo:TERM with id GO:0090057 * Created object of type obo:TERM with id GO:0090058 * Created object of type obo:TERM with id GO:0090059 * Created object of type obo:TERM with id GO:0090060 * [Changed name of GO:0044154 from "null" to "histone H3-K14 acetylation", Set definition of GO:0044154 to "The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 14 of the histone.", Added definition dbxref GOC:jl to GO:0044154, Added definition dbxref PMID:17194708 to GO:0044154, Added definition dbxref UniProtKB:lb to GO:0044154, Added synonym "histone H3 acetylation at K14" to GO:0044154, Changed synonym scope of GO:0044154 from "Related" to "Exact", Added synonym "histone H3K14 acetylation" to GO:0044154, Changed synonym scope of GO:0044154 from "Related" to "Exact", Created link GO:0044154 -OBO_REL:is_a-> GO:0043966, Assigned namespace "biological_process" to GO:0044154] * Changed name of GO:0044154 from "null" to "histone H3-K14 acetylation" * Set definition of GO:0044154 to "The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 14 of the histone." * Added definition dbxref GOC:jl to GO:0044154 * Added definition dbxref PMID:17194708 to GO:0044154 * Added definition dbxref UniProtKB:lb to GO:0044154 * Added synonym "histone H3 acetylation at K14" to GO:0044154 * Changed synonym scope of GO:0044154 from "Related" to "Exact" * Added synonym "histone H3K14 acetylation" to GO:0044154 * Changed synonym scope of GO:0044154 from "Related" to "Exact" * Created link GO:0044154 -OBO_REL:is_a-> GO:0043966 * Assigned namespace "biological_process" to GO:0044154 * [Changed name of GO:0044155 from "null" to "host caveola", Set definition of GO:0044155 to "A small pit, depression, or invagination, such as any of the minute pits or incuppings of the host cell membrane formed during pinocytosis, that communicates with the outside of a host cell and extends inward, indenting the host cytoplasm and the host cell membrane. Such caveolae may be pinched off to form free vesicles within the host cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.", Added definition dbxref UniProtKB:rh to GO:0044155, Created link GO:0044155 -part_of-> GO:0033644, Created link GO:0044155 -OBO_REL:is_a-> GO:0033643, Assigned namespace "cellular_component" to GO:0044155] * Changed name of GO:0044155 from "null" to "host caveola" * Set definition of GO:0044155 to "A small pit, depression, or invagination, such as any of the minute pits or incuppings of the host cell membrane formed during pinocytosis, that communicates with the outside of a host cell and extends inward, indenting the host cytoplasm and the host cell membrane. Such caveolae may be pinched off to form free vesicles within the host cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction." * Added definition dbxref UniProtKB:rh to GO:0044155 * Created link GO:0044155 -part_of-> GO:0033644 * Created link GO:0044155 -OBO_REL:is_a-> GO:0033643 * Assigned namespace "cellular_component" to GO:0044155 * [Changed name of GO:0044156 from "null" to "host cell junction", Set definition of GO:0044156 to "A plasma membrane part that forms a specialized region of connection between two host cells or between a host cell and the host extracellular matrix. At a host cell junction, anchoring proteins extend through the host plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.", Added definition dbxref UniProtKB:rh to GO:0044156, Created link GO:0044156 -OBO_REL:is_a-> GO:0033643, Created link GO:0044156 -part_of-> GO:0020002, Assigned namespace "cellular_component" to GO:0044156] * Changed name of GO:0044156 from "null" to "host cell junction" * Set definition of GO:0044156 to "A plasma membrane part that forms a specialized region of connection between two host cells or between a host cell and the host extracellular matrix. At a host cell junction, anchoring proteins extend through the host plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix." * Added definition dbxref UniProtKB:rh to GO:0044156 * Created link GO:0044156 -OBO_REL:is_a-> GO:0033643 * Created link GO:0044156 -part_of-> GO:0020002 * Assigned namespace "cellular_component" to GO:0044156 * [Changed name of GO:0044157 from "null" to "host cell projection", Set definition of GO:0044157 to "A prolongation or process extending from a host cell, e.g. a flagellum or axon.", Added definition dbxref UniProtKB:rh to GO:0044157, Created link GO:0044157 -OBO_REL:is_a-> GO:0033643, Assigned namespace "cellular_component" to GO:0044157] * Changed name of GO:0044157 from "null" to "host cell projection" * Set definition of GO:0044157 to "A prolongation or process extending from a host cell, e.g. a flagellum or axon." * Added definition dbxref UniProtKB:rh to GO:0044157 * Created link GO:0044157 -OBO_REL:is_a-> GO:0033643 * Assigned namespace "cellular_component" to GO:0044157 * [Changed name of GO:0044158 from "null" to "host cell wall", Set definition of GO:0044158 to "The rigid or semi-rigid envelope lying outside the host cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan.", Added definition dbxref UniProtKB:rh to GO:0044158, Created link GO:0044158 -OBO_REL:is_a-> GO:0033643, Assigned namespace "cellular_component" to GO:0044158] * Changed name of GO:0044158 from "null" to "host cell wall" * Set definition of GO:0044158 to "The rigid or semi-rigid envelope lying outside the host cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan." * Added definition dbxref UniProtKB:rh to GO:0044158 * Created link GO:0044158 -OBO_REL:is_a-> GO:0033643 * Assigned namespace "cellular_component" to GO:0044158 * [Changed name of GO:0044159 from "null" to "host thylakoid", Set definition of GO:0044159 to "A membranous cellular structure within the host cell that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the host plasma membrane. In eukaryotic host cells they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.", Added definition dbxref UniProtKB:rh to GO:0044159, Created link GO:0044159 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044159] * Changed name of GO:0044159 from "null" to "host thylakoid" * Set definition of GO:0044159 to "A membranous cellular structure within the host cell that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the host plasma membrane. In eukaryotic host cells they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation." * Added definition dbxref UniProtKB:rh to GO:0044159 * Created link GO:0044159 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044159 * [Changed name of GO:0044160 from "null" to "host thylakoid membrane", Set definition of GO:0044160 to "The pigmented membrane of any host thylakoid.", Added definition dbxref UniProtKB:rh to GO:0044160, Created link GO:0044160 -part_of-> GO:0044159, Created link GO:0044160 -OBO_REL:is_a-> GO:0033655, Created link GO:0044160 -OBO_REL:is_a-> GO:0033644, Assigned namespace "cellular_component" to GO:0044160] * Changed name of GO:0044160 from "null" to "host thylakoid membrane" * Set definition of GO:0044160 to "The pigmented membrane of any host thylakoid." * Added definition dbxref UniProtKB:rh to GO:0044160 * Created link GO:0044160 -part_of-> GO:0044159 * Created link GO:0044160 -OBO_REL:is_a-> GO:0033655 * Created link GO:0044160 -OBO_REL:is_a-> GO:0033644 * Assigned namespace "cellular_component" to GO:0044160 * [Changed name of GO:0044161 from "null" to "host cell cytoplasmic vesicle", Set definition of GO:0044161 to "A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.", Added definition dbxref UniProtKB:rh to GO:0044161, Created link GO:0044161 -OBO_REL:is_a-> GO:0033647, Created link GO:0044161 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044161] * Changed name of GO:0044161 from "null" to "host cell cytoplasmic vesicle" * Set definition of GO:0044161 to "A vesicle formed of membrane or protein, found in the cytoplasm of a host cell." * Added definition dbxref UniProtKB:rh to GO:0044161 * Created link GO:0044161 -OBO_REL:is_a-> GO:0033647 * Created link GO:0044161 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044161 * [Changed name of GO:0044162 from "null" to "host cell cytoplasmic vesicle membrane", Set definition of GO:0044162 to "The lipid bilayer surrounding a host cell cytoplasmic vesicle.", Added definition dbxref UniProtKB:rh to GO:0044162, Created link GO:0044162 -OBO_REL:is_a-> GO:0033655, Created link GO:0044162 -part_of-> GO:0044161, Created link GO:0044162 -OBO_REL:is_a-> GO:0033644, Assigned namespace "cellular_component" to GO:0044162] * Changed name of GO:0044162 from "null" to "host cell cytoplasmic vesicle membrane" * Set definition of GO:0044162 to "The lipid bilayer surrounding a host cell cytoplasmic vesicle." * Added definition dbxref UniProtKB:rh to GO:0044162 * Created link GO:0044162 -OBO_REL:is_a-> GO:0033655 * Created link GO:0044162 -part_of-> GO:0044161 * Created link GO:0044162 -OBO_REL:is_a-> GO:0033644 * Assigned namespace "cellular_component" to GO:0044162 * [Changed name of GO:0044163 from "null" to "host cytoskeleton", Set definition of GO:0044163 to "Any of the various filamentous elements that form the internal framework of host cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the host cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the host cell. The various elements of the host cytoskeleton not only serve in the maintenance of host cellular shape but also have roles in other host cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.", Added definition dbxref UniProtKB:rh to GO:0044163, Created link GO:0044163 -OBO_REL:is_a-> GO:0033646, Assigned namespace "cellular_component" to GO:0044163] * Changed name of GO:0044163 from "null" to "host cytoskeleton" * Set definition of GO:0044163 to "Any of the various filamentous elements that form the internal framework of host cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the host cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the host cell. The various elements of the host cytoskeleton not only serve in the maintenance of host cellular shape but also have roles in other host cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles." * Added definition dbxref UniProtKB:rh to GO:0044163 * Created link GO:0044163 -OBO_REL:is_a-> GO:0033646 * Assigned namespace "cellular_component" to GO:0044163 * [Changed name of GO:0060816 from "null" to "random inactivation of X chromosome", Set definition of GO:0060816 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on either the paternal or maternal X-chromosome in the XX sex.", Added definition dbxref GOC:dph to GO:0060816, Added definition dbxref GOC:sdb_2009 to GO:0060816, Added definition dbxref GOC:tb to GO:0060816, Created link GO:0060816 -OBO_REL:is_a-> GO:0009048, Assigned namespace "biological_process" to GO:0060816] * Changed name of GO:0060816 from "null" to "random inactivation of X chromosome" * Set definition of GO:0060816 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on either the paternal or maternal X-chromosome in the XX sex." * Added definition dbxref GOC:dph to GO:0060816 * Added definition dbxref GOC:sdb_2009 to GO:0060816 * Added definition dbxref GOC:tb to GO:0060816 * Created link GO:0060816 -OBO_REL:is_a-> GO:0009048 * Assigned namespace "biological_process" to GO:0060816 * [Changed name of GO:0060817 from "null" to "inactivation of paternal X chromosome", Set definition of GO:0060817 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes specifically on the paternal X-chromosome in the XX sex.", Added definition dbxref GOC:dph to GO:0060817, Added definition dbxref GOC:sdb_2009 to GO:0060817, Added definition dbxref GOC:tb to GO:0060817, Created link GO:0060817 -OBO_REL:is_a-> GO:0009048, Assigned namespace "biological_process" to GO:0060817] * Changed name of GO:0060817 from "null" to "inactivation of paternal X chromosome" * Set definition of GO:0060817 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes specifically on the paternal X-chromosome in the XX sex." * Added definition dbxref GOC:dph to GO:0060817 * Added definition dbxref GOC:sdb_2009 to GO:0060817 * Added definition dbxref GOC:tb to GO:0060817 * Created link GO:0060817 -OBO_REL:is_a-> GO:0009048 * Assigned namespace "biological_process" to GO:0060817 * [Changed name of GO:0060818 from "null" to "inactivation of paternal X chromosome by genetic imprinting", Set definition of GO:0060818 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on the paternal X-chromosome in the XX sex by genetic imprinting.", Added definition dbxref GOC:dph to GO:0060818, Added definition dbxref GOC:sdb_2009 to GO:0060818, Added definition dbxref GOC:tb to GO:0060818, Created link GO:0060818 -OBO_REL:is_a-> GO:0060817, Created link GO:0060818 -OBO_REL:is_a-> GO:0060819, Assigned namespace "biological_process" to GO:0060818] * Changed name of GO:0060818 from "null" to "inactivation of paternal X chromosome by genetic imprinting" * Set definition of GO:0060818 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on the paternal X-chromosome in the XX sex by genetic imprinting." * Added definition dbxref GOC:dph to GO:0060818 * Added definition dbxref GOC:sdb_2009 to GO:0060818 * Added definition dbxref GOC:tb to GO:0060818 * Created link GO:0060818 -OBO_REL:is_a-> GO:0060817 * Created link GO:0060818 -OBO_REL:is_a-> GO:0060819 * Assigned namespace "biological_process" to GO:0060818 * [Changed name of GO:0060819 from "null" to "inactivation of X chromosome by genetic imprinting", Set definition of GO:0060819 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by genetic imprinting.", Added definition dbxref GOC:dph to GO:0060819, Added definition dbxref GOC:sdb_2009 to GO:0060819, Added definition dbxref GOC:tb to GO:0060819, Created link GO:0060819 -OBO_REL:is_a-> GO:0006349, Created link GO:0060819 -OBO_REL:is_a-> GO:0009048, Assigned namespace "biological_process" to GO:0060819] * Changed name of GO:0060819 from "null" to "inactivation of X chromosome by genetic imprinting" * Set definition of GO:0060819 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by genetic imprinting." * Added definition dbxref GOC:dph to GO:0060819 * Added definition dbxref GOC:sdb_2009 to GO:0060819 * Added definition dbxref GOC:tb to GO:0060819 * Created link GO:0060819 -OBO_REL:is_a-> GO:0006349 * Created link GO:0060819 -OBO_REL:is_a-> GO:0009048 * Assigned namespace "biological_process" to GO:0060819 * [Changed name of GO:0060820 from "null" to "inactivation of X chromosome by heterochromatin formation", Set definition of GO:0060820 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by the mechanism of heterochromatin formation.", Added definition dbxref GOC:dph to GO:0060820, Added definition dbxref GOC:sdb_2009 to GO:0060820, Added definition dbxref GOC:tb to GO:0060820, Created link GO:0060820 -OBO_REL:is_a-> GO:0031507, Created link GO:0060820 -OBO_REL:is_a-> GO:0009048, Assigned namespace "biological_process" to GO:0060820] * Changed name of GO:0060820 from "null" to "inactivation of X chromosome by heterochromatin formation" * Set definition of GO:0060820 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by the mechanism of heterochromatin formation." * Added definition dbxref GOC:dph to GO:0060820 * Added definition dbxref GOC:sdb_2009 to GO:0060820 * Added definition dbxref GOC:tb to GO:0060820 * Created link GO:0060820 -OBO_REL:is_a-> GO:0031507 * Created link GO:0060820 -OBO_REL:is_a-> GO:0009048 * Assigned namespace "biological_process" to GO:0060820 * [Changed name of GO:0060821 from "null" to "inactivation of X chromosome by DNA methylation", Set definition of GO:0060821 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by a mechanism of DNA methylation.", Added definition dbxref GOC:dph to GO:0060821, Added definition dbxref GOC:sdb_2009 to GO:0060821, Added definition dbxref GOC:tb to GO:0060821, Created link GO:0060821 -OBO_REL:is_a-> GO:0009048, Assigned namespace "biological_process" to GO:0060821] * Changed name of GO:0060821 from "null" to "inactivation of X chromosome by DNA methylation" * Set definition of GO:0060821 to "Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by a mechanism of DNA methylation." * Added definition dbxref GOC:dph to GO:0060821 * Added definition dbxref GOC:sdb_2009 to GO:0060821 * Added definition dbxref GOC:tb to GO:0060821 * Created link GO:0060821 -OBO_REL:is_a-> GO:0009048 * Assigned namespace "biological_process" to GO:0060821 * [Changed name of GO:0060822 from "null" to "transforming growth factor beta receptor signaling pathway involved in axial mesodermal cell fate specification", Set definition of GO:0060822 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the specification of an axial mesodermal fate.", Added definition dbxref GOC:dph to GO:0060822, Added definition dbxref GOC:sdb_2009 to GO:0060822, Added definition dbxref GOC:tb to GO:0060822, Created link GO:0060822 -OBO_REL:is_a-> GO:0060798, Created link GO:0060822 -part_of-> GO:0048327, Assigned namespace "biological_process" to GO:0060822] * Changed name of GO:0060822 from "null" to "transforming growth factor beta receptor signaling pathway involved in axial mesodermal cell fate specification" * Set definition of GO:0060822 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands and ultimately resulting in the specification of an axial mesodermal fate." * Added definition dbxref GOC:dph to GO:0060822 * Added definition dbxref GOC:sdb_2009 to GO:0060822 * Added definition dbxref GOC:tb to GO:0060822 * Created link GO:0060822 -OBO_REL:is_a-> GO:0060798 * Created link GO:0060822 -part_of-> GO:0048327 * Assigned namespace "biological_process" to GO:0060822 * [Changed name of GO:0060823 from "null" to "Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation", Set definition of GO:0060823 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes that contributes to the formation of the neural plate anterior/posterior pattern.", Added definition dbxref GOC:dph to GO:0060823, Added definition dbxref GOC:sdb_2009 to GO:0060823, Added definition dbxref GOC:tb to GO:0060823, Created link GO:0060823 -part_of-> GO:0021999, Created link GO:0060823 -OBO_REL:is_a-> GO:0060070, Assigned namespace "biological_process" to GO:0060823] * Changed name of GO:0060823 from "null" to "Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation" * Set definition of GO:0060823 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes that contributes to the formation of the neural plate anterior/posterior pattern." * Added definition dbxref GOC:dph to GO:0060823 * Added definition dbxref GOC:sdb_2009 to GO:0060823 * Added definition dbxref GOC:tb to GO:0060823 * Created link GO:0060823 -part_of-> GO:0021999 * Created link GO:0060823 -OBO_REL:is_a-> GO:0060070 * Assigned namespace "biological_process" to GO:0060823 * [Changed name of GO:0060824 from "null" to "retinoic acid receptor signaling pathway involved in neural plate anterior/posterior pattern formation", Set definition of GO:0060824 to "The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to the formation of the anterior/posterior pattern of the neural plate.", Added definition dbxref GOC:dph to GO:0060824, Added definition dbxref GOC:sdb_2009 to GO:0060824, Added definition dbxref GOC:tb to GO:0060824, Created link GO:0060824 -OBO_REL:is_a-> GO:0048384, Created link GO:0060824 -part_of-> GO:0021999, Assigned namespace "biological_process" to GO:0060824] * Changed name of GO:0060824 from "null" to "retinoic acid receptor signaling pathway involved in neural plate anterior/posterior pattern formation" * Set definition of GO:0060824 to "The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to the formation of the anterior/posterior pattern of the neural plate." * Added definition dbxref GOC:dph to GO:0060824 * Added definition dbxref GOC:sdb_2009 to GO:0060824 * Added definition dbxref GOC:tb to GO:0060824 * Created link GO:0060824 -OBO_REL:is_a-> GO:0048384 * Created link GO:0060824 -part_of-> GO:0021999 * Assigned namespace "biological_process" to GO:0060824 * [Changed name of GO:0060825 from "null" to "fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation", Set definition of GO:0060825 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands contributing to the anterior/posterior pattern of the neural plate.", Added definition dbxref GOC:dph to GO:0060825, Added definition dbxref GOC:sdb_2009 to GO:0060825, Added definition dbxref GOC:tb to GO:0060825, Created link GO:0060825 -OBO_REL:is_a-> GO:0008543, Created link GO:0060825 -part_of-> GO:0021999, Assigned namespace "biological_process" to GO:0060825] * Changed name of GO:0060825 from "null" to "fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation" * Set definition of GO:0060825 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands contributing to the anterior/posterior pattern of the neural plate." * Added definition dbxref GOC:dph to GO:0060825 * Added definition dbxref GOC:sdb_2009 to GO:0060825 * Added definition dbxref GOC:tb to GO:0060825 * Created link GO:0060825 -OBO_REL:is_a-> GO:0008543 * Created link GO:0060825 -part_of-> GO:0021999 * Assigned namespace "biological_process" to GO:0060825 * [Changed name of GO:0060826 from "null" to "transforming growth factor beta receptor signaling pathway involved in neural plate anterior/posterior pattern formation", Set definition of GO:0060826 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands, contributing to the formation of the neural plate anterior/posterior pattern.", Added definition dbxref GOC:dph to GO:0060826, Added definition dbxref GOC:sdb_2009 to GO:0060826, Added definition dbxref GOC:tb to GO:0060826, Created link GO:0060826 -OBO_REL:is_a-> GO:0007179, Created link GO:0060826 -part_of-> GO:0021999, Assigned namespace "biological_process" to GO:0060826] * Changed name of GO:0060826 from "null" to "transforming growth factor beta receptor signaling pathway involved in neural plate anterior/posterior pattern formation" * Set definition of GO:0060826 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands, contributing to the formation of the neural plate anterior/posterior pattern." * Added definition dbxref GOC:dph to GO:0060826 * Added definition dbxref GOC:sdb_2009 to GO:0060826 * Added definition dbxref GOC:tb to GO:0060826 * Created link GO:0060826 -OBO_REL:is_a-> GO:0007179 * Created link GO:0060826 -part_of-> GO:0021999 * Assigned namespace "biological_process" to GO:0060826 * [Changed name of GO:0060827 from "null" to "regulation of Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation", Set definition of GO:0060827 to "Any process that modulates the rate, frequency, or extent of Wnt receptor signaling through beta-catenin that results in the formation of the neural plate anterior/posterior pattern.", Added definition dbxref GOC:dph to GO:0060827, Added definition dbxref GOC:sdb_2009 to GO:0060827, Added definition dbxref GOC:tb to GO:0060827, Created link GO:0060827 -regulates-> GO:0060823, Created link GO:0060827 -OBO_REL:is_a-> GO:0060828, Assigned namespace "biological_process" to GO:0060827] * Changed name of GO:0060827 from "null" to "regulation of Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation" * Set definition of GO:0060827 to "Any process that modulates the rate, frequency, or extent of Wnt receptor signaling through beta-catenin that results in the formation of the neural plate anterior/posterior pattern." * Added definition dbxref GOC:dph to GO:0060827 * Added definition dbxref GOC:sdb_2009 to GO:0060827 * Added definition dbxref GOC:tb to GO:0060827 * Created link GO:0060827 -regulates-> GO:0060823 * Created link GO:0060827 -OBO_REL:is_a-> GO:0060828 * Assigned namespace "biological_process" to GO:0060827 * [Changed name of GO:0060828 from "null" to "regulation of Wnt receptor signaling pathway through beta-catenin", Set definition of GO:0060828 to "Any process that modulates the rate, frequency, or extent of the Wnt receptor signaling pathway through beta-catenin, the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes.", Added definition dbxref GOC:dph to GO:0060828, Added definition dbxref GOC:sdb_2009 to GO:0060828, Added definition dbxref GOC:tb to GO:0060828, Created link GO:0060828 -OBO_REL:is_a-> GO:0030111, Created link GO:0060828 -regulates-> GO:0060070, Assigned namespace "biological_process" to GO:0060828] * Changed name of GO:0060828 from "null" to "regulation of Wnt receptor signaling pathway through beta-catenin" * Set definition of GO:0060828 to "Any process that modulates the rate, frequency, or extent of the Wnt receptor signaling pathway through beta-catenin, the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes." * Added definition dbxref GOC:dph to GO:0060828 * Added definition dbxref GOC:sdb_2009 to GO:0060828 * Added definition dbxref GOC:tb to GO:0060828 * Created link GO:0060828 -OBO_REL:is_a-> GO:0030111 * Created link GO:0060828 -regulates-> GO:0060070 * Assigned namespace "biological_process" to GO:0060828 * [Changed name of GO:0060829 from "null" to "negative regulation of Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation", Set definition of GO:0060829 to "Any process that decreases the rate, frequency, or extent of the Wnt receptor signaling pathway through beta-catenin in the anterior end of the neural plate. This regulation sets up a Wnt signaling gradient along the anterior/posterior axis.", Added definition dbxref GOC:dph to GO:0060829, Added definition dbxref GOC:sdb_2009 to GO:0060829, Added definition dbxref GOC:tb to GO:0060829, Created link GO:0060829 -OBO_REL:is_a-> GO:0030178, Created link GO:0060829 -OBO_REL:is_a-> GO:0060827, Assigned namespace "biological_process" to GO:0060829] * Changed name of GO:0060829 from "null" to "negative regulation of Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation" * Set definition of GO:0060829 to "Any process that decreases the rate, frequency, or extent of the Wnt receptor signaling pathway through beta-catenin in the anterior end of the neural plate. This regulation sets up a Wnt signaling gradient along the anterior/posterior axis." * Added definition dbxref GOC:dph to GO:0060829 * Added definition dbxref GOC:sdb_2009 to GO:0060829 * Added definition dbxref GOC:tb to GO:0060829 * Created link GO:0060829 -OBO_REL:is_a-> GO:0030178 * Created link GO:0060829 -OBO_REL:is_a-> GO:0060827 * Assigned namespace "biological_process" to GO:0060829 * [Changed name of GO:0060830 from "null" to "ciliary receptor clustering involved in smoothened signaling pathway", Set definition of GO:0060830 to "Grouping of smoothened or patched receptors in a cilium, contributing to the smoothened signaling pathway.", Added definition dbxref GOC:dph to GO:0060830, Added definition dbxref GOC:sdb_2009 to GO:0060830, Added definition dbxref GOC:tb to GO:0060830, Created link GO:0060830 -OBO_REL:is_a-> GO:0043113, Created link GO:0060830 -part_of-> GO:0007224, Assigned namespace "biological_process" to GO:0060830] * Changed name of GO:0060830 from "null" to "ciliary receptor clustering involved in smoothened signaling pathway" * Set definition of GO:0060830 to "Grouping of smoothened or patched receptors in a cilium, contributing to the smoothened signaling pathway." * Added definition dbxref GOC:dph to GO:0060830 * Added definition dbxref GOC:sdb_2009 to GO:0060830 * Added definition dbxref GOC:tb to GO:0060830 * Created link GO:0060830 -OBO_REL:is_a-> GO:0043113 * Created link GO:0060830 -part_of-> GO:0007224 * Assigned namespace "biological_process" to GO:0060830 * [Changed name of GO:0060831 from "null" to "smoothened signaling pathway involved in dorsal/ventral neural tube patterning", Set definition of GO:0060831 to "The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened contributing to the dorsal/ventral pattern of the neural tube.", Added definition dbxref GOC:dph to GO:0060831, Added definition dbxref GOC:sdb_2009 to GO:0060831, Added definition dbxref GOC:tb to GO:0060831, Created link GO:0060831 -OBO_REL:is_a-> GO:0007224, Created link GO:0060831 -part_of-> GO:0021904, Assigned namespace "biological_process" to GO:0060831] * Changed name of GO:0060831 from "null" to "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" * Set definition of GO:0060831 to "The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened contributing to the dorsal/ventral pattern of the neural tube." * Added definition dbxref GOC:dph to GO:0060831 * Added definition dbxref GOC:sdb_2009 to GO:0060831 * Added definition dbxref GOC:tb to GO:0060831 * Created link GO:0060831 -OBO_REL:is_a-> GO:0007224 * Created link GO:0060831 -part_of-> GO:0021904 * Assigned namespace "biological_process" to GO:0060831 * [Changed name of GO:0060832 from "null" to "oocyte animal/vegetal axis specification", Set definition of GO:0060832 to "The establishment, maintenance and elaboration of the animal/vegetal axis in the oocyte. The animal/vegetal axis of an oocyte is defined by the placement of the nucleus in the oocyte and can sometimes be identified by the asymmetric placement of other substances such as yolk in the oocyte. The pole of the egg that is closest to the nucleus defines the animal end, with the axis passing through the nucleus.", Added definition dbxref GOC:dph to GO:0060832, Added definition dbxref GOC:sdb_2009 to GO:0060832, Added definition dbxref GOC:tb to GO:0060832, Created link GO:0060832 -OBO_REL:is_a-> GO:0007309, Assigned namespace "biological_process" to GO:0060832] * Changed name of GO:0060832 from "null" to "oocyte animal/vegetal axis specification" * Set definition of GO:0060832 to "The establishment, maintenance and elaboration of the animal/vegetal axis in the oocyte. The animal/vegetal axis of an oocyte is defined by the placement of the nucleus in the oocyte and can sometimes be identified by the asymmetric placement of other substances such as yolk in the oocyte. The pole of the egg that is closest to the nucleus defines the animal end, with the axis passing through the nucleus." * Added definition dbxref GOC:dph to GO:0060832 * Added definition dbxref GOC:sdb_2009 to GO:0060832 * Added definition dbxref GOC:tb to GO:0060832 * Created link GO:0060832 -OBO_REL:is_a-> GO:0007309 * Assigned namespace "biological_process" to GO:0060832 * [Changed name of GO:0060833 from "null" to "Wnt receptor signaling pathway involved in animal/vegetal axis specification", Set definition of GO:0060833 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the specification of the animal/vegetal axis of an oocyte.", Added definition dbxref GOC:dph to GO:0060833, Added definition dbxref GOC:sdb_2009 to GO:0060833, Added definition dbxref GOC:tb to GO:0060833, Created link GO:0060833 -OBO_REL:is_a-> GO:0016055, Created link GO:0060833 -part_of-> GO:0060832, Assigned namespace "biological_process" to GO:0060833] * Changed name of GO:0060833 from "null" to "Wnt receptor signaling pathway involved in animal/vegetal axis specification" * Set definition of GO:0060833 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the specification of the animal/vegetal axis of an oocyte." * Added definition dbxref GOC:dph to GO:0060833 * Added definition dbxref GOC:sdb_2009 to GO:0060833 * Added definition dbxref GOC:tb to GO:0060833 * Created link GO:0060833 -OBO_REL:is_a-> GO:0016055 * Created link GO:0060833 -part_of-> GO:0060832 * Assigned namespace "biological_process" to GO:0060833 * [Changed name of GO:0060834 from "null" to "oral/aboral axis specification", Set definition of GO:0060834 to "The establishment, maintenance and elaboration of a line that delineates the mouth and the anus of an embryo.", Added definition dbxref GOC:dph to GO:0060834, Added definition dbxref GOC:sdb_2009 to GO:0060834, Added definition dbxref GOC:tb to GO:0060834, Created link GO:0060834 -OBO_REL:is_a-> GO:0000578, Assigned namespace "biological_process" to GO:0060834] * Changed name of GO:0060834 from "null" to "oral/aboral axis specification" * Set definition of GO:0060834 to "The establishment, maintenance and elaboration of a line that delineates the mouth and the anus of an embryo." * Added definition dbxref GOC:dph to GO:0060834 * Added definition dbxref GOC:sdb_2009 to GO:0060834 * Added definition dbxref GOC:tb to GO:0060834 * Created link GO:0060834 -OBO_REL:is_a-> GO:0000578 * Assigned namespace "biological_process" to GO:0060834 * [Changed name of GO:0060835 from "null" to "transforming growth factor receptor beta signaling pathway involved in oral/aboral axis specification", Set definition of GO:0060835 to "x.", Added definition dbxref GOC:dph to GO:0060835, Added definition dbxref GOC:sdb_2009 to GO:0060835, Added definition dbxref GOC:tb to GO:0060835, Created link GO:0060835 -part_of-> GO:0060834, Created link GO:0060835 -OBO_REL:is_a-> GO:0007179, Assigned namespace "biological_process" to GO:0060835] * Changed name of GO:0060835 from "null" to "transforming growth factor receptor beta signaling pathway involved in oral/aboral axis specification" * Set definition of GO:0060835 to "x." * Added definition dbxref GOC:dph to GO:0060835 * Added definition dbxref GOC:sdb_2009 to GO:0060835 * Added definition dbxref GOC:tb to GO:0060835 * Created link GO:0060835 -part_of-> GO:0060834 * Created link GO:0060835 -OBO_REL:is_a-> GO:0007179 * Assigned namespace "biological_process" to GO:0060835 * [Changed name of GO:0060836 from "null" to "lymphatic endothelial cell differentiation", Set definition of GO:0060836 to "The process whereby a venous blood vessel endothelial cell acquires specialized features of a lymphatic vessel endothelial cell, a thin flattened cell that lines the inside surfaces of lymph vessels.", Added definition dbxref GOC:dph to GO:0060836, Added definition dbxref GOC:sdb_2009 to GO:0060836, Added definition dbxref GOC:tb to GO:0060836, Created link GO:0060836 -part_of-> GO:0001945, Created link GO:0060836 -OBO_REL:is_a-> GO:0045446, Assigned namespace "biological_process" to GO:0060836] * Changed name of GO:0060836 from "null" to "lymphatic endothelial cell differentiation" * Set definition of GO:0060836 to "The process whereby a venous blood vessel endothelial cell acquires specialized features of a lymphatic vessel endothelial cell, a thin flattened cell that lines the inside surfaces of lymph vessels." * Added definition dbxref GOC:dph to GO:0060836 * Added definition dbxref GOC:sdb_2009 to GO:0060836 * Added definition dbxref GOC:tb to GO:0060836 * Created link GO:0060836 -part_of-> GO:0001945 * Created link GO:0060836 -OBO_REL:is_a-> GO:0045446 * Assigned namespace "biological_process" to GO:0060836 * [Changed name of GO:0060837 from "null" to "blood vessel endothelial cell differentiation", Set definition of GO:0060837 to "The process whereby a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell, a thin flattened cell that lines the inside surfaces of blood vessels.", Added definition dbxref GOC:dph to GO:0060837, Added definition dbxref GOC:sdb_2009 to GO:0060837, Added definition dbxref GOC:tb to GO:0060837, Created link GO:0060837 -OBO_REL:is_a-> GO:0045446, Created link GO:0060837 -part_of-> GO:0001568, Assigned namespace "biological_process" to GO:0060837] * Changed name of GO:0060837 from "null" to "blood vessel endothelial cell differentiation" * Set definition of GO:0060837 to "The process whereby a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell, a thin flattened cell that lines the inside surfaces of blood vessels." * Added definition dbxref GOC:dph to GO:0060837 * Added definition dbxref GOC:sdb_2009 to GO:0060837 * Added definition dbxref GOC:tb to GO:0060837 * Created link GO:0060837 -OBO_REL:is_a-> GO:0045446 * Created link GO:0060837 -part_of-> GO:0001568 * Assigned namespace "biological_process" to GO:0060837 * [Changed name of GO:0060838 from "null" to "lymphatic endothelial cell fate commitment", Set definition of GO:0060838 to "The commitment of a venous blood vessel endothelial cell to a lymphatic endothelial cell fate and its capacity to differentiate into a lymphatic endothelial cell.", Added definition dbxref GOC:dph to GO:0060838, Added definition dbxref GOC:sdb_2009 to GO:0060838, Added definition dbxref GOC:tb to GO:0060838, Created link GO:0060838 -OBO_REL:is_a-> GO:0060839, Created link GO:0060838 -part_of-> GO:0060836, Assigned namespace "biological_process" to GO:0060838] * Changed name of GO:0060838 from "null" to "lymphatic endothelial cell fate commitment" * Set definition of GO:0060838 to "The commitment of a venous blood vessel endothelial cell to a lymphatic endothelial cell fate and its capacity to differentiate into a lymphatic endothelial cell." * Added definition dbxref GOC:dph to GO:0060838 * Added definition dbxref GOC:sdb_2009 to GO:0060838 * Added definition dbxref GOC:tb to GO:0060838 * Created link GO:0060838 -OBO_REL:is_a-> GO:0060839 * Created link GO:0060838 -part_of-> GO:0060836 * Assigned namespace "biological_process" to GO:0060838 * [Changed name of GO:0060839 from "null" to "endothelial cell fate commitment", Set definition of GO:0060839 to "The commitment of a cell to an endothelial cell fate and its capacity to differentiate into an endothelial cell.", Added definition dbxref GOC:dph to GO:0060839, Added definition dbxref GOC:sdb_2009 to GO:0060839, Added definition dbxref GOC:tb to GO:0060839, Created link GO:0060839 -OBO_REL:is_a-> GO:0045165, Created link GO:0060839 -part_of-> GO:0045446, Assigned namespace "biological_process" to GO:0060839] * Changed name of GO:0060839 from "null" to "endothelial cell fate commitment" * Set definition of GO:0060839 to "The commitment of a cell to an endothelial cell fate and its capacity to differentiate into an endothelial cell." * Added definition dbxref GOC:dph to GO:0060839 * Added definition dbxref GOC:sdb_2009 to GO:0060839 * Added definition dbxref GOC:tb to GO:0060839 * Created link GO:0060839 -OBO_REL:is_a-> GO:0045165 * Created link GO:0060839 -part_of-> GO:0045446 * Assigned namespace "biological_process" to GO:0060839 * [Changed name of GO:0070852 from "null" to "cell body fiber", Set definition of GO:0070852 to "A neuron projection that is found in unipolar neurons and corresponds to the region between the cell body and the point at which the single projection branches.", Added definition dbxref GOC:dos to GO:0070852, Added definition dbxref GOC:mah to GO:0070852, Added synonym "primary neurite" to GO:0070852, Added general dbxref GOC:mah to synonym primary neurite of GO:0070852, Added general dbxref GOC:dos to synonym primary neurite of GO:0070852, Created link GO:0070852 -OBO_REL:is_a-> GO:0043005, Assigned namespace "cellular_component" to GO:0070852] * Changed name of GO:0070852 from "null" to "cell body fiber" * Set definition of GO:0070852 to "A neuron projection that is found in unipolar neurons and corresponds to the region between the cell body and the point at which the single projection branches." * Added definition dbxref GOC:dos to GO:0070852 * Added definition dbxref GOC:mah to GO:0070852 * Added synonym "primary neurite" to GO:0070852 * Added general dbxref GOC:mah to synonym primary neurite of GO:0070852 * Added general dbxref GOC:dos to synonym primary neurite of GO:0070852 * Created link GO:0070852 -OBO_REL:is_a-> GO:0043005 * Assigned namespace "cellular_component" to GO:0070852 * [Changed name of GO:0090057 from "null" to "root radial pattern formation", Set definition of GO:0090057 to "The radial pattern formation process that results in the formation of the different tissues of the root around its radial axis.", Added definition dbxref GOC:dph to GO:0090057, Added definition dbxref GOC:sdb_2009 to GO:0090057, Added definition dbxref GOC:tb to GO:0090057, Created link GO:0090057 -OBO_REL:is_a-> GO:0009956, Created link GO:0090057 -part_of-> GO:0048364, Assigned namespace "biological_process" to GO:0090057] * Changed name of GO:0090057 from "null" to "root radial pattern formation" * Set definition of GO:0090057 to "The radial pattern formation process that results in the formation of the different tissues of the root around its radial axis." * Added definition dbxref GOC:dph to GO:0090057 * Added definition dbxref GOC:sdb_2009 to GO:0090057 * Added definition dbxref GOC:tb to GO:0090057 * Created link GO:0090057 -OBO_REL:is_a-> GO:0009956 * Created link GO:0090057 -part_of-> GO:0048364 * Assigned namespace "biological_process" to GO:0090057 * [Changed name of GO:0090058 from "null" to "metaxylem development", Set definition of GO:0090058 to "The process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed.", Added definition dbxref GOC:dph to GO:0090058, Added definition dbxref GOC:sdb_2009 to GO:0090058, Added definition dbxref GOC:tb to GO:0090058, Created link GO:0090058 -OBO_REL:is_a-> GO:0048856, Created link GO:0090058 -part_of-> GO:0010089, Assigned namespace "biological_process" to GO:0090058] * Changed name of GO:0090058 from "null" to "metaxylem development" * Set definition of GO:0090058 to "The process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed." * Added definition dbxref GOC:dph to GO:0090058 * Added definition dbxref GOC:sdb_2009 to GO:0090058 * Added definition dbxref GOC:tb to GO:0090058 * Created link GO:0090058 -OBO_REL:is_a-> GO:0048856 * Created link GO:0090058 -part_of-> GO:0010089 * Assigned namespace "biological_process" to GO:0090058 * [Changed name of GO:0090059 from "null" to "protoxylem development", Set definition of GO:0090059 to "The process whose specific outcome is the progression of the protoxylem over time, from its formation to the mature structure. The protoxylem comprises the first formed elements of the primary xylem.", Added definition dbxref GOC:dph to GO:0090059, Added definition dbxref GOC:sdb_2009 to GO:0090059, Added definition dbxref GOC:tb to GO:0090059, Created link GO:0090059 -OBO_REL:is_a-> GO:0048856, Created link GO:0090059 -part_of-> GO:0010089, Assigned namespace "biological_process" to GO:0090059] * Changed name of GO:0090059 from "null" to "protoxylem development" * Set definition of GO:0090059 to "The process whose specific outcome is the progression of the protoxylem over time, from its formation to the mature structure. The protoxylem comprises the first formed elements of the primary xylem." * Added definition dbxref GOC:dph to GO:0090059 * Added definition dbxref GOC:sdb_2009 to GO:0090059 * Added definition dbxref GOC:tb to GO:0090059 * Created link GO:0090059 -OBO_REL:is_a-> GO:0048856 * Created link GO:0090059 -part_of-> GO:0010089 * Assigned namespace "biological_process" to GO:0090059 * [Changed name of GO:0090060 from "null" to "regulation of metaxylem development", Set definition of GO:0090060 to "Any process that modulates the frequency, rate, or extent of metaxylem development. Metaxylem development is the process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed.", Added definition dbxref GOC:dph to GO:0090060, Added definition dbxref GOC:sdb_2009 to GO:0090060, Added definition dbxref GOC:tb to GO:0090060, Created link GO:0090060 -OBO_REL:is_a-> GO:0051239, Created link GO:0090060 -OBO_REL:is_a-> GO:0050793, Created link GO:0090060 -regulates-> GO:0090058, Assigned namespace "biological_process" to GO:0090060] * Changed name of GO:0090060 from "null" to "regulation of metaxylem development" * Set definition of GO:0090060 to "Any process that modulates the frequency, rate, or extent of metaxylem development. Metaxylem development is the process whose specific outcome is the progression of the metaxylem over time, from its formation to the mature structure. The metaxylem is the part of the primary xylem that differentiates after the protoxylem and before the secondary xylem, if any of the latter is formed." * Added definition dbxref GOC:dph to GO:0090060 * Added definition dbxref GOC:sdb_2009 to GO:0090060 * Added definition dbxref GOC:tb to GO:0090060 * Created link GO:0090060 -OBO_REL:is_a-> GO:0051239 * Created link GO:0090060 -OBO_REL:is_a-> GO:0050793 * Created link GO:0090060 -regulates-> GO:0090058 * Assigned namespace "biological_process" to GO:0090060 * Deleted GO:0000038 --OBO_REL:is_a--> GO:0001676 * Created link GO:0000038 -OBO_REL:is_a-> GO:0006631 * Changed definition of GO:0000578 from "Axis specification in the embryo." to "The establishment, maintenance and elaboration of a pattern along a line or a point in an embryo." * Added definition dbxref GOC:dph to GO:0000578 * Added definition dbxref GOC:sdb_2009 to GO:0000578 * Added definition dbxref GOC:tb to GO:0000578 * Deleted GO:0007317 --OBO_REL:is_a--> GO:0051239 * Deleted GO:0008359 --OBO_REL:is_a--> GO:0051239 * Changed definition of GO:0009798 from "The establishment, maintenance and elaboration of a pattern along a line or a point." to "The establishment, maintenance and elaboration of a pattern along a line or around a point." * Deleted synonym "epidermal cell differentiation (sensu Insecta)" from GO:0009913 * Deleted synonym "epidermal cell fate specification (sensu Insecta)" from GO:0009957 * Deleted synonym "cell surface (sensu Magnoliophyta)" from GO:0009986 * Deleted synonym "glial cell differentiation (sensu Nematoda and Protostomia)" from GO:0010001 * Changed definition of GO:0010004 from "A complex and coordinated series of cellular movements, including germ band extension, that occurs at the end of cleavage during embryonic development." to "A complex and coordinated series of cellular movements, including germ band extension, that occurs at the end of cleavage during embryonic development. An example of this process is found in Drosophila melanogaster." * Deleted synonym "gastrulation (sensu Insecta)" from GO:0010004 * Deleted synonym "cortical microtubule (sensu Viridiplantae)" from GO:0010005 * Changed definition of GO:0010026 from "The process whereby a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell." to "The process whereby a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "trichome cell differentiation (sensu Magnoliophyta)" from GO:0010026 * Deleted synonym "trichome differentiation (sensu Magnoliophyta)" from GO:0010026 * Added synonym "trichome cell differentiation" to GO:0010026 * Changed synonym scope of GO:0010026 from "Related" to "Exact" * Changed definition of GO:0010051 from "The regionalization process that gives rise to the patterning of the conducting tissues." to "The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "vascular tissue pattern formation (sensu Tracheophyta)" from GO:0010051 * Added synonym "vascular tissue pattern formation" to GO:0010051 * Changed synonym scope of GO:0010051 from "Related" to "Exact" * Changed definition of GO:0010069 from "The division of the zygote in a plane perpendicular to the long axis of the embryo sac to produce a larger basal cell near the micropyle and a small terminal cell close to what was the central cell and is now the developing endosperm." to "The division of the zygote in a plane perpendicular to the long axis of the embryo sac to produce a larger basal cell near the micropyle and a small terminal cell close to what was the central cell and is now the developing endosperm. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "zygote asymmetric cytokinesis (sensu Magnoliophyta)" from GO:0010069 * Changed name of GO:0010087 from "phloem or xylem histogenesis" to "phloem or xylem development" * Changed definition of GO:0010087 from "The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure." to "The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "phloem or xylem development" from GO:0010087 * Deleted synonym "vascular tissue development (sensu Tracheophyta)" from GO:0010087 * Deleted synonym "vascular tissue histogenesis (sensu Tracheophyta)" from GO:0010087 * Added synonym "phloem or xylem histogenesis" to GO:0010087 * Added general dbxref GOC:tb to synonym phloem or xylem histogenesis of GO:0010087 * Changed synonym scope of GO:0010087 from "Related" to "Exact" * Added synonym "vascular tissue development" to GO:0010087 * Changed synonym scope of GO:0010087 from "Related" to "Broad" * Added synonym "vascular tissue histogenesis" to GO:0010087 * Changed synonym scope of GO:0010087 from "Related" to "Exact" * Changed name of GO:0010088 from "phloem histogenesis" to "phloem development" * Added synonym "phloem histogenesis" to GO:0010088 * Added general dbxref GOC:tb to synonym phloem histogenesis of GO:0010088 * Changed synonym scope of GO:0010088 from "Related" to "Exact" * Changed name of GO:0010089 from "xylem histogenesis" to "xylem development" * Added synonym "xylem histogenesis" to GO:0010089 * Added general dbxref GOC:tb to synonym xylem histogenesis of GO:0010089 * Changed synonym scope of GO:0010089 from "Related" to "Exact" * Changed definition of GO:0010090 from "The process by which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell." to "The process by which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "trichome cell morphogenesis during differentiation (sensu Magnoliophyta)" from GO:0010090 * Deleted synonym "trichome morphogenesis (sensu Magnoliophyta)" from GO:0010090 * Added synonym "trichome cell morphogenesis during differentiation" to GO:0010090 * Changed synonym scope of GO:0010090 from "Related" to "Exact" * Changed definition of GO:0010091 from "Any process involved in the formation of branches in plant hair cells." to "Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "trichome branching (sensu Magnoliophyta)" from GO:0010091 * Changed definition of GO:0010149 from "A preprogrammed process that occurs in an organism that is associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of organelles, membranes and other cellular components." to "A preprogrammed process associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of organelles, membranes and other cellular components. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "senescence (sensu Magnoliophyta)" from GO:0010149 * Deleted synonym "dehydrogenase complex (sensu Viridiplantae)" from GO:0010240 * Added synonym "dehydrogenase complex" to GO:0010240 * Changed synonym scope of GO:0010240 from "Related" to "Broad" * Changed definition of GO:0010260 from "The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism." to "The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana." * Deleted synonym "organ senescence (sensu Magnoliophyta)" from GO:0010260 * Deleted GO:0010271 --OBO_REL:is_a--> GO:0051193 * Deleted synonym "cellulose synthase complex (sensu Viridiplantae)" from GO:0010330 * Deleted GO:0010380 --OBO_REL:is_a--> GO:0051193 * Deleted GO:0010908 --OBO_REL:is_a--> GO:0031326 * Deleted GO:0010909 --OBO_REL:is_a--> GO:0031328 * Deleted synonym "lipid storage body (sensu Viridiplantae)" from GO:0012511 * Deleted synonym "neural rod formation (sensu Mus)" from GO:0014021 * Deleted synonym "secondary neural tube formation (sensu Mus)" from GO:0014021 * Added synonym "neural rod formation" to GO:0014021 * Deleted synonym "neural rod formation (sensu Teleost)" from GO:0014023 * Deleted synonym "neural rod cavitation (sensu Teleost)" from GO:0014024 * Deleted synonym "fat body metabolic process (sensu Insecta)" from GO:0015032 * Deleted synonym "fat body metabolism (sensu Insecta)" from GO:0015032 * Added synonym "fat body metabolic process" to GO:0015032 * Changed synonym scope of GO:0015032 from "Related" to "Broad" * Added synonym "fat body metabolism" to GO:0015032 * Changed synonym scope of GO:0015032 from "Related" to "Broad" * Deleted synonym "protein secretion by the general secretion pathway [sensu Bacteria]" from GO:0015628 * Deleted synonym "protein secretion by the general secretory pathway [sensu Bacteria]" from GO:0015628 * Added synonym "protein secretion by the general secretion pathway" to GO:0015628 * Added synonym "protein secretion by the general secretory pathway" to GO:0015628 * Changed definition of GO:0016325 from "Formation and maintenance of a polarized microtubule array originating from a microtubule-organizing center (MTOC) in the oocyte." to "Formation and maintenance of a polarized microtubule array originating from a microtubule-organizing center (MTOC) in the oocyte. An example of this is found in Drosophila melanogaster." * Deleted synonym "oocyte microtubule cytoskeleton organisation (sensu Insecta)" from GO:0016325 * Deleted synonym "oocyte microtubule cytoskeleton organization (sensu Insecta)" from GO:0016325 * Changed definition of GO:0016330 from "A discrete cell cycle that occurs during the third instar eye imaginal disc after progression of the morphogenetic furrow. It is essential for generation of a sufficient pool of uncommitted cells to develop complete ommatidia." to "A discrete cell cycle that occurs during the third instar eye imaginal disc after progression of the morphogenetic furrow. It is essential for generation of a sufficient pool of uncommitted cells to develop complete ommatidia. An example of this is found in Drosophila melanogaster." * Deleted synonym "second mitotic wave (sensu Endopterygota)" from GO:0016330 * Changed definition of GO:0016348 from "The process by which the anatomical structures of an imaginal disc-derived leg joint are generated and organized. Morphogenesis pertains to the creation of form. The leg joint is a flexible region that separates the rigid sections of a leg to allow movement in a controlled manner." to "The process by which the anatomical structures of an imaginal disc-derived leg joint are generated and organized. Morphogenesis pertains to the creation of form. The leg joint is a flexible region that separates the rigid sections of a leg to allow movement in a controlled manner. An example of this is found in Drosophila melanogaster." * Deleted synonym "leg joint morphogenesis (sensu Endopterygota)" from GO:0016348 * Changed definition of GO:0016456 from "An RNA-protein complex localized to the X chromosome of males where it is required for the hyper-transcriptional activation of the X chromosome." to "An RNA-protein complex localized to the X chromosome of males where it is required for the hyper-transcriptional activation of the X chromosome. An example of this is found in Drosophila melanogaster." * Deleted synonym "dosage compensation complex (sensu Insecta)" from GO:0016456 * Added synonym "dosage compensation complex" to GO:0016456 * Changed synonym scope of GO:0016456 from "Related" to "Broad" * Changed definition of GO:0016457 from "The aggregation, arrangement and bonding together of proteins on DNA to form the complex that mediates dosage compensation on the X chromosome of the heterogametic sex, ultimately resulting in a two-fold increase in transcription from this chromosome." to "The aggregation, arrangement and bonding together of proteins on DNA to form the complex that mediates dosage compensation on the X chromosome of the heterogametic sex, ultimately resulting in a two-fold increase in transcription from this chromosome. An example of this is found in Drosophila melanogaster." * Deleted synonym "dosage compensation complex assembly (sensu Insecta)" from GO:0016457 * Changed definition of GO:0016490 from "The action of a molecule that contributes to the structural integrity of the peritrophic membrane, a tubular sheath of cuticle that shields the epithelial cells of the midgut from the gut contents." to "The action of a molecule that contributes to the structural integrity of the peritrophic membrane, a tubular sheath of cuticle that shields the epithelial cells of the midgut from the gut contents. An example of this is found in Drosophila melanogaster." * Deleted synonym "structural constituent of peritrophic matrix (sensu Insecta)" from GO:0016490 * Deleted synonym "structural constituent of peritrophic membrane (sensu Insecta)" from GO:0016490 * Added synonym "structural constituent of peritrophic matrix" to GO:0016490 * Changed definition of GO:0016543 from "The process during courtship, where the male orients towards a potential partner." to "The process during courtship, where the male orients towards a potential partner. An example of this is found in Drosophila melanogaster." * Deleted synonym "male courtship behavior (sensu Insecta), orientation" from GO:0016543 * Deleted synonym "male courtship behaviour (sensu Insecta), orientation" from GO:0016543 * Added synonym "male courtship behavior, orientation" to GO:0016543 * Added synonym "male courtship behaviour, orientation" to GO:0016543 * Added synonym "male courtship behaviour, orientation prior to leg tapping and wing vibration" to GO:0016543 * Changed definition of GO:0016544 from "The process during courtship where the male insect taps the female with his frontal leg." to "The process during courtship where the male insect taps the female with his frontal leg. An example of this is found in Drosophila melanogaster." * Deleted synonym "male courtship behavior (sensu Insecta), tapping" from GO:0016544 * Deleted synonym "male courtship behaviour (sensu Insecta), tapping" from GO:0016544 * Added synonym "male courtship behavior, tapping" to GO:0016544 * Added synonym "male courtship behaviour, tapping" to GO:0016544 * Changed synonym scope of GO:0016544 from "Related" to "Exact" * Added synonym "male courtship behaviour, tapping to detect pheromone" to GO:0016544 * Changed definition of GO:0016545 from "The process during courtship where the male insect vibrates his wings." to "The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster." * Deleted synonym "male courtship behavior (sensu Insecta), wing vibration" from GO:0016545 * Deleted synonym "male courtship behaviour (sensu Insecta), wing vibration" from GO:0016545 * Added synonym "male courtship behavior, wing vibration" to GO:0016545 * Added synonym "male courtship behaviour, wing vibration" to GO:0016545 * Changed definition of GO:0016546 from "The process during courtship where the male licks the genitalia of a stationary female fly with his proboscis." to "The process during courtship where the male fly licks the genitalia of a stationary female fly with his proboscis. An example of this is found in Drosophila melanogaster." * Deleted synonym "male courtship behavior (sensu Insecta), licking" from GO:0016546 * Deleted synonym "male courtship behaviour (sensu Insecta), licking" from GO:0016546 * Added synonym "male courtship behavior, licking" to GO:0016546 * Added synonym "male courtship behaviour, licking" to GO:0016546 * Deleted synonym "electron transfer flavoprotein complex (sensu Eukaryota)" from GO:0017133 * Deleted synonym "molting cycle (sensu Protostomia and Nematoda)" from GO:0018988 * Changed definition of GO:0018990 from "The shedding of the old chitin-based cuticlar fragments during the molting cycle." to "The shedding of the old chitin-based cuticlar fragments during the molting cycle. An example of this is found in Drosophila melanogaster." * Deleted synonym "ecdysis (sensu Insecta)" from GO:0018990 * Changed definition of GO:0018996 from "The periodic shedding of part or all of a collagen and cuticulin-based cuticle, which is then replaced by a new collagen and cuticulin-based cuticle." to "The periodic shedding of part or all of a collagen and cuticulin-based cuticle, which is then replaced by a new collagen and cuticulin-based cuticle. An example of this is found in the Nematode worm, Caenorhabditis elegans." * Deleted synonym "molting cycle (sensu Nematoda)" from GO:0018996 * Deleted synonym "viral capsid (sensu Retroviridae)" from GO:0019028 * Changed definition of GO:0019094 from "Any process by which mRNA is transported to, or maintained in, the oocyte pole plasm." to "Any process by which mRNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster." * Deleted synonym "pole granule RNA localization (sensu Insecta)" from GO:0019094 * Deleted synonym "pole plasm mRNA localization (sensu Insecta)" from GO:0019094 * Changed definition of GO:0019095 from "Any process by which mitochondrial ribosomal RNA is transported to, or maintained in, the oocyte pole plasm." to "Any process by which mitochondrial ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster." * Deleted synonym "pole plasm mitochondrial rRNA localization (sensu Insecta)" from GO:0019095 * Changed definition of GO:0019096 from "Any process by which mitochondrial large ribosomal RNA is transported to, or maintained in, the oocyte pole plasm." to "Any process by which mitochondrial large ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster." * Deleted synonym "pole plasm mitochondrial lrRNA localization (sensu Insecta)" from GO:0019096 * Changed definition of GO:0019097 from "Any process by which mitochondrial small ribosomal RNA is transported to, or maintained in, the oocyte pole plasm." to "Any process by which mitochondrial small ribosomal RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster." * Deleted synonym "pole plasm mitochondrial srRNA localization (sensu Insecta)" from GO:0019097 * Changed definition of GO:0019773 from "The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex." to "The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus." * Deleted synonym "proteasome core complex, alpha-subunit complex (sensu Eukaryota)" from GO:0019773 * Changed definition of GO:0019774 from "The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex." to "The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus." * Deleted synonym "proteasome core complex, beta-subunit complex (sensu Eukaryota)" from GO:0019774 * Changed definition of GO:0019910 from "A mitochondrial complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex." to "A mitochondrial complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. An example of this component is found in Mus musculus." * Deleted synonym "pyruvate dehydrogenase (lipoamide) phosphatase complex (sensu Eukaryota)" from GO:0019910 * Changed definition of GO:0020020 from "Vacuole within a parasite used for digestion of the host cell cytoplasm." to "Vacuole within a parasite used for digestion of the host cell cytoplasm. An example of this component is found in the Apicomplexa." * Deleted synonym "food vacuole (sensu Apicomplexa)" from GO:0020020 * Deleted synonym "dense granule (sensu Apicomplexa)" from GO:0020026 * Changed definition of GO:0020030 from "Protrusion that develops in the plasma membrane of a parasitized erythrocyte." to "Protrusion that develops in the plasma membrane of a parasitized erythrocyte. An example of this component is found in Plasmodium species." * Deleted synonym "knob (sensu Plasmodium)" from GO:0020030 * Changed name of GO:0021907 from "fibroblast growth factor receptor signaling pathway involved in spinal cord anterior-posterior patterning" to "fibroblast growth factor receptor signaling pathway involved in spinal cord anterior/posterior pattern formation" * Changed name of GO:0021908 from "retinoic acid receptor signaling pathway in spinal cord anterior-posterior patterning" to "retinoic acid receptor signaling pathway involved in spinal cord anterior/posterior pattern formation" * Changed name of GO:0021999 from "neural plate anterioposterior pattern formation" to "neural plate anterior/posterior pattern formation" * Changed definition of GO:0022625 from "The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components." to "The large subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components. Examples of this component are found in Mus musculus, and in Bacterial and Archaeal species." * Deleted synonym "cytosolic large ribosomal subunit (sensu Archaea)" from GO:0022625 * Deleted synonym "cytosolic large ribosomal subunit (sensu Bacteria)" from GO:0022625 * Deleted synonym "cytosolic large ribosomal subunit (sensu Eukaryota)" from GO:0022625 * Changed definition of GO:0022626 from "A ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components." to "A ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components. Examples of this component are found in Mus musculus, and in Bacterial and Archaeal species." * Deleted synonym "cytosolic ribosome (sensu Archaea)" from GO:0022626 * Deleted synonym "cytosolic ribosome (sensu Bacteria)" from GO:0022626 * Deleted synonym "cytosolic ribosome (sensu Eukaryota)" from GO:0022626 * Changed definition of GO:0022627 from "The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components." to "The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components. Examples of this component are found in Mus musculus, and in Bacterial and Archaeal species." * Deleted synonym "cytosolic small ribosomal subunit (sensu Archaea)" from GO:0022627 * Deleted synonym "cytosolic small ribosomal subunit (sensu Bacteria)" from GO:0022627 * Deleted synonym "cytosolic small ribosomal subunit (sensu Eukaryota)" from GO:0022627 * Deleted synonym "bud site selection/establishment of cell polarity (sensu Saccharomyces)" from GO:0030010 * Deleted synonym "establishment of cell polarity (sensu Fungi)" from GO:0030010 * Deleted synonym "establishment of cell polarity (sensu Saccharomyces)" from GO:0030010 * Added synonym "bud site selection/establishment of cell polarity" to GO:0030010 * Changed synonym scope of GO:0030010 from "Related" to "Narrow" * Deleted synonym "maintenance of cell polarity (sensu Fungi)" from GO:0030011 * Deleted synonym "maintenance of cell polarity (sensu Saccharomyces)" from GO:0030011 * Deleted synonym "TCA cycle enzyme complex (sensu Eukaryota)" from GO:0030062 * Deleted synonym "tricarboxylic acid cycle enzyme complex (sensu Eukaryota)" from GO:0030062 * Added synonym "TCA cycle enzyme complex" to GO:0030062 * Changed synonym scope of GO:0030062 from "Related" to "Broad" * Deleted synonym "thylakoid (sensu Cyanobacteria)" from GO:0030075 * Deleted GO:0030075 --OBO_REL:is_a--> GO:0042716 * Changed definition of GO:0030077 from "A plasma membrane protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center." to "A plasma membrane protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center. Examples of this complex are found in bacterial species." * Deleted synonym "light-harvesting complex (sensu Gram-negative Bacteria)" from GO:0030077 * Deleted synonym "light-harvesting complex (sensu Proteobacteria)" from GO:0030077 * Changed definition of GO:0030093 from "Photosystem located in the chloroplast that functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin." to "Photosystem located in the chloroplast that functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin. An example of this is found in Arabidopsis thaliana." * Deleted synonym "photosystem I (sensu Magnoliophyta)" from GO:0030093 * Changed definition of GO:0030094 from "A protein complex located in the plasma membrane-derived thylakoid. The photosystem functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin." to "A protein complex located in the plasma membrane-derived thylakoid. The photosystem functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin. Examples of this complex are found in bacterial species." * Deleted synonym "photosystem I (sensu Cyanobacteria)" from GO:0030094 * Deleted GO:0032306 --OBO_REL:is_a--> GO:0032890 * Deleted GO:0032307 --OBO_REL:is_a--> GO:0032891 * Deleted GO:0032308 --OBO_REL:is_a--> GO:0032892 * Created link GO:0033384 -OBO_REL:is_a-> GO:0016114 * Created link GO:0033386 -OBO_REL:is_a-> GO:0016114 * Created link GO:0033470 -OBO_REL:is_a-> GO:0043650 * Created link GO:0033480 -OBO_REL:is_a-> GO:0009226 * Created link GO:0033521 -OBO_REL:is_a-> GO:0016114 * Created link GO:0033654 -OBO_REL:is_a-> GO:0044160 * Created link GO:0034229 -OBO_REL:is_a-> GO:0015850 * Created link GO:0034276 -OBO_REL:is_a-> GO:0046394 * Created link GO:0034357 -part_of-> GO:0009579 * Created link GO:0034589 -OBO_REL:is_a-> GO:0015718 * Created link GO:0034633 -OBO_REL:is_a-> GO:0046865 * Changed name of GO:0034671 from "retinoic acid receptor signaling pathway involved in pronephros anterior-posterior patterning" to "retinoic acid receptor signaling pathway involved in pronephros anterior/posterior pattern formation" * Created link GO:0035238 -OBO_REL:is_a-> GO:0008299 * Deleted GO:0042121 --OBO_REL:is_a--> GO:0033692 * Created link GO:0042121 -OBO_REL:is_a-> GO:0046354 * Created link GO:0042189 -OBO_REL:is_a-> GO:0046184 * Created link GO:0042204 -OBO_REL:is_a-> GO:0044270 * Created link GO:0042318 -OBO_REL:is_a-> GO:0046394 * Created link GO:0042359 -OBO_REL:is_a-> GO:0008202 * Created link GO:0042368 -OBO_REL:is_a-> GO:0006694 * Created link GO:0042369 -OBO_REL:is_a-> GO:0006706 * Created link GO:0042373 -OBO_REL:is_a-> GO:0042180 * Created link GO:0042377 -OBO_REL:is_a-> GO:0042182 * Created link GO:0042412 -OBO_REL:is_a-> GO:0044272 * Created link GO:0042425 -OBO_REL:is_a-> GO:0046165 * Created link GO:0042430 -OBO_REL:is_a-> GO:0006807 * Deleted GO:0042432 --OBO_REL:is_a--> GO:0044249 * Created link GO:0042432 -OBO_REL:is_a-> GO:0018130 * Created link GO:0042558 -OBO_REL:is_a-> GO:0006807 * Created link GO:0042559 -OBO_REL:is_a-> GO:0018130 * Created link GO:0042559 -OBO_REL:is_a-> GO:0044271 * Created link GO:0042560 -OBO_REL:is_a-> GO:0044270 * Created link GO:0042616 -OBO_REL:is_a-> GO:0016101 * Created link GO:0042617 -OBO_REL:is_a-> GO:0016102 * Deleted GO:0042665 --OBO_REL:is_a--> GO:0051239 * Created link GO:0042701 -OBO_REL:is_a-> GO:0006869 * Changed definition of GO:0042716 from "A pigment-bearing structure found in certain photosynthetic bacteria and cyanobacteria which is derived from the cytoplasmic membrane, sometimes consisting of simple invaginations and sometimes a complete vesicle." to "A pigment-bearing structure that is derived from the cytoplasmic membrane, sometimes consisting of simple invaginations and sometimes a complete vesicle. This component is found in certain photosynthetic bacteria and cyanobacteria." * Deleted synonym "thylakoid (sensu Bacteria)" from GO:0042716 * Deleted synonym "thylakoid (sensu Proteobacteria)" from GO:0042716 * Deleted GO:0042760 --OBO_REL:is_a--> GO:0042758 * Created link GO:0042760 -OBO_REL:is_a-> GO:0009062 * Changed definition of GO:0045446 from "The process whereby a relatively unspecialized cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium." to "The process whereby a mesodermal angioblast acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium." * Deleted GO:0090006 --OBO_REL:is_a--> GO:0010638 * Created link GO:0090006 -OBO_REL:is_a-> GO:0033044 * Created link GO:0090033 -OBO_REL:is_a-> GO:0045927 * Created link GO:0090046 -OBO_REL:is_a-> GO:0050789 * Deleted GO:0090049 --OBO_REL:is_a--> GO:0010594 * Created link GO:0090049 -OBO_REL:is_a-> GO:0043535 * Created link GO:0090050 -OBO_REL:is_a-> GO:0043536 * Created link GO:0090051 -OBO_REL:is_a-> GO:0043537 * Created link GO:0090056 -OBO_REL:is_a-> GO:0051193 From gocvs at genome.stanford.edu Wed Aug 12 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 12 Aug 2009 21:30:12 -0700 Subject: [Go-diff] GO update 08/12/2009 Message-ID: <200908130430.n7D4UCX0027455@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.744 by 1.748 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060840 * Created object of type obo:TERM with id GO:0060841 * Created object of type obo:TERM with id GO:0060842 * Created object of type obo:TERM with id GO:0060843 * Created object of type obo:TERM with id GO:0060844 * Created object of type obo:TERM with id GO:0060845 * Created object of type obo:TERM with id GO:0060846 * Created object of type obo:TERM with id GO:0060847 * Created object of type obo:TERM with id GO:0060848 * Created object of type obo:TERM with id GO:0060849 * Created object of type obo:TERM with id GO:0060850 * Created object of type obo:TERM with id GO:0060851 * Created object of type obo:TERM with id GO:0060852 * Created object of type obo:TERM with id GO:0060853 * Created object of type obo:TERM with id GO:0060854 * Created object of type obo:TERM with id GO:0060855 * Created object of type obo:TERM with id GO:0060856 * Created object of type obo:TERM with id GO:0060857 * Created object of type obo:TERM with id GO:0060858 * Created object of type obo:TERM with id GO:0060859 * Created object of type obo:TERM with id GO:0060860 * Created object of type obo:TERM with id GO:0060861 * Created object of type obo:TERM with id GO:0060862 * Created object of type obo:TERM with id GO:0060863 * Created object of type obo:TERM with id GO:0060864 * Created object of type obo:TERM with id GO:0060865 * Created object of type obo:TERM with id GO:0060866 * Created object of type obo:TERM with id GO:0060867 * Created object of type obo:TERM with id GO:0060868 * Created object of type obo:TERM with id GO:0060869 * Created object of type obo:TERM with id GO:0060870 * Created object of type obo:TERM with id GO:0060871 * Created object of type obo:TERM with id GO:0090061 * Created object of type obo:TERM with id GO:0090062 * Created object of type obo:TERM with id GO:0090063 * Created object of type obo:TERM with id GO:0090064 * Created object of type obo:TERM with id GO:0090065 * [Changed name of GO:0060840 from "null" to "artery development", Set definition of GO:0060840 to "The progression of the artery over time, from its initial formation to the mature structure. An artery is a blood vessel that carries blood away from the heart to a capillary bed.", Added definition dbxref GOC:dph to GO:0060840, Added definition dbxref GOC:sdb_2009 to GO:0060840, Added definition dbxref GOC:tb to GO:0060840, Created link GO:0060840 -OBO_REL:is_a-> GO:0001568, Assigned namespace "biological_process" to GO:0060840] * Changed name of GO:0060840 from "null" to "artery development" * Set definition of GO:0060840 to "The progression of the artery over time, from its initial formation to the mature structure. An artery is a blood vessel that carries blood away from the heart to a capillary bed." * Added definition dbxref GOC:dph to GO:0060840 * Added definition dbxref GOC:sdb_2009 to GO:0060840 * Added definition dbxref GOC:tb to GO:0060840 * Created link GO:0060840 -OBO_REL:is_a-> GO:0001568 * Assigned namespace "biological_process" to GO:0060840 * [Changed name of GO:0060841 from "null" to "venous blood vessel development", Set definition of GO:0060841 to "The progression of the venous blood vessel over time from its initial formation to the mature structure. Venous blood vessels carry blood back to the heart after the capillary bed.", Added definition dbxref GOC:dph to GO:0060841, Added definition dbxref GOC:sdb_2009 to GO:0060841, Added definition dbxref GOC:tb to GO:0060841, Created link GO:0060841 -OBO_REL:is_a-> GO:0001568, Assigned namespace "biological_process" to GO:0060841] * Changed name of GO:0060841 from "null" to "venous blood vessel development" * Set definition of GO:0060841 to "The progression of the venous blood vessel over time from its initial formation to the mature structure. Venous blood vessels carry blood back to the heart after the capillary bed." * Added definition dbxref GOC:dph to GO:0060841 * Added definition dbxref GOC:sdb_2009 to GO:0060841 * Added definition dbxref GOC:tb to GO:0060841 * Created link GO:0060841 -OBO_REL:is_a-> GO:0001568 * Assigned namespace "biological_process" to GO:0060841 * [Changed name of GO:0060842 from "null" to "arterial endothelial cell differentiation", Set definition of GO:0060842 to "The process whereby a relatively unspecialized endothelial cell acquires specialized features of an arterial endothelial cell, a thin flattened cell that lines the inside surfaces of arteries.", Added definition dbxref GOC:dph to GO:0060842, Added definition dbxref GOC:sdb_2009 to GO:0060842, Added definition dbxref GOC:tb to GO:0060842, Created link GO:0060842 -OBO_REL:is_a-> GO:0060837, Assigned namespace "biological_process" to GO:0060842] * Changed name of GO:0060842 from "null" to "arterial endothelial cell differentiation" * Set definition of GO:0060842 to "The process whereby a relatively unspecialized endothelial cell acquires specialized features of an arterial endothelial cell, a thin flattened cell that lines the inside surfaces of arteries." * Added definition dbxref GOC:dph to GO:0060842 * Added definition dbxref GOC:sdb_2009 to GO:0060842 * Added definition dbxref GOC:tb to GO:0060842 * Created link GO:0060842 -OBO_REL:is_a-> GO:0060837 * Assigned namespace "biological_process" to GO:0060842 * [Changed name of GO:0060843 from "null" to "venous endothelial cell differentiation", Set definition of GO:0060843 to "The process whereby a relatively unspecialized endothelial cell acquires specialized features of a venous endothelial cell, a thin flattened cell that lines the inside surfaces of veins.", Added definition dbxref GOC:dph to GO:0060843, Added definition dbxref GOC:sdb_2009 to GO:0060843, Added definition dbxref GOC:tb to GO:0060843, Created link GO:0060843 -OBO_REL:is_a-> GO:0060837, Assigned namespace "biological_process" to GO:0060843] * Changed name of GO:0060843 from "null" to "venous endothelial cell differentiation" * Set definition of GO:0060843 to "The process whereby a relatively unspecialized endothelial cell acquires specialized features of a venous endothelial cell, a thin flattened cell that lines the inside surfaces of veins." * Added definition dbxref GOC:dph to GO:0060843 * Added definition dbxref GOC:sdb_2009 to GO:0060843 * Added definition dbxref GOC:tb to GO:0060843 * Created link GO:0060843 -OBO_REL:is_a-> GO:0060837 * Assigned namespace "biological_process" to GO:0060843 * [Changed name of GO:0060844 from "null" to "arterial endothelial cell fate commitment", Set definition of GO:0060844 to "The commitment of a cell to an arterial endothelial cell fate and its capacity to differentiate into an arterial endothelial cell.", Added definition dbxref GOC:dph to GO:0060844, Added definition dbxref GOC:sdb_2009 to GO:0060844, Added definition dbxref GOC:tb to GO:0060844, Created link GO:0060844 -part_of-> GO:0060842, Created link GO:0060844 -OBO_REL:is_a-> GO:0060846, Assigned namespace "biological_process" to GO:0060844] * Changed name of GO:0060844 from "null" to "arterial endothelial cell fate commitment" * Set definition of GO:0060844 to "The commitment of a cell to an arterial endothelial cell fate and its capacity to differentiate into an arterial endothelial cell." * Added definition dbxref GOC:dph to GO:0060844 * Added definition dbxref GOC:sdb_2009 to GO:0060844 * Added definition dbxref GOC:tb to GO:0060844 * Created link GO:0060844 -part_of-> GO:0060842 * Created link GO:0060844 -OBO_REL:is_a-> GO:0060846 * Assigned namespace "biological_process" to GO:0060844 * [Changed name of GO:0060845 from "null" to "venous endothelial cell fate commitment", Set definition of GO:0060845 to "The commitment of a cell to a venous endothelial cell fate and its capacity to differentiate into an venous endothelial cell.", Added definition dbxref GOC:dph to GO:0060845, Added definition dbxref GOC:sdb_2009 to GO:0060845, Added definition dbxref GOC:tb to GO:0060845, Created link GO:0060845 -part_of-> GO:0060843, Created link GO:0060845 -OBO_REL:is_a-> GO:0060846, Assigned namespace "biological_process" to GO:0060845] * Changed name of GO:0060845 from "null" to "venous endothelial cell fate commitment" * Set definition of GO:0060845 to "The commitment of a cell to a venous endothelial cell fate and its capacity to differentiate into an venous endothelial cell." * Added definition dbxref GOC:dph to GO:0060845 * Added definition dbxref GOC:sdb_2009 to GO:0060845 * Added definition dbxref GOC:tb to GO:0060845 * Created link GO:0060845 -part_of-> GO:0060843 * Created link GO:0060845 -OBO_REL:is_a-> GO:0060846 * Assigned namespace "biological_process" to GO:0060845 * [Changed name of GO:0060846 from "null" to "blood vessel endothelial cell fate commitment", Set definition of GO:0060846 to "The commitment of a cell to a blood vessel endothelial cell fate and its capacity to differentiate into a blood vessel endothelial cell.", Added definition dbxref GOC:dph to GO:0060846, Added definition dbxref GOC:sdb_2009 to GO:0060846, Added definition dbxref GOC:tb to GO:0060846, Created link GO:0060846 -OBO_REL:is_a-> GO:0060839, Created link GO:0060846 -part_of-> GO:0060837, Assigned namespace "biological_process" to GO:0060846] * Changed name of GO:0060846 from "null" to "blood vessel endothelial cell fate commitment" * Set definition of GO:0060846 to "The commitment of a cell to a blood vessel endothelial cell fate and its capacity to differentiate into a blood vessel endothelial cell." * Added definition dbxref GOC:dph to GO:0060846 * Added definition dbxref GOC:sdb_2009 to GO:0060846 * Added definition dbxref GOC:tb to GO:0060846 * Created link GO:0060846 -OBO_REL:is_a-> GO:0060839 * Created link GO:0060846 -part_of-> GO:0060837 * Assigned namespace "biological_process" to GO:0060846 * [Changed name of GO:0060847 from "null" to "endothelial cell fate specification", Set definition of GO:0060847 to "The process involved in the specification of identity of an endothelial cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.", Added definition dbxref GOC:dph to GO:0060847, Added definition dbxref GOC:sdb_2009 to GO:0060847, Added definition dbxref GOC:tb to GO:0060847, Created link GO:0060847 -part_of-> GO:0060839, Created link GO:0060847 -OBO_REL:is_a-> GO:0001708, Assigned namespace "biological_process" to GO:0060847] * Changed name of GO:0060847 from "null" to "endothelial cell fate specification" * Set definition of GO:0060847 to "The process involved in the specification of identity of an endothelial cell. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment." * Added definition dbxref GOC:dph to GO:0060847 * Added definition dbxref GOC:sdb_2009 to GO:0060847 * Added definition dbxref GOC:tb to GO:0060847 * Created link GO:0060847 -part_of-> GO:0060839 * Created link GO:0060847 -OBO_REL:is_a-> GO:0001708 * Assigned namespace "biological_process" to GO:0060847 * [Changed name of GO:0060848 from "null" to "endothelial cell fate determination", Set definition of GO:0060848 to "Process involved in cell fate commitment of an endothelial cell. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.", Added definition dbxref GOC:dph to GO:0060848, Added definition dbxref GOC:sdb_2009 to GO:0060848, Added definition dbxref GOC:tb to GO:0060848, Created link GO:0060848 -part_of-> GO:0060839, Created link GO:0060848 -OBO_REL:is_a-> GO:0001709, Assigned namespace "biological_process" to GO:0060848] * Changed name of GO:0060848 from "null" to "endothelial cell fate determination" * Set definition of GO:0060848 to "Process involved in cell fate commitment of an endothelial cell. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment." * Added definition dbxref GOC:dph to GO:0060848 * Added definition dbxref GOC:sdb_2009 to GO:0060848 * Added definition dbxref GOC:tb to GO:0060848 * Created link GO:0060848 -part_of-> GO:0060839 * Created link GO:0060848 -OBO_REL:is_a-> GO:0001709 * Assigned namespace "biological_process" to GO:0060848 * [Changed name of GO:0060849 from "null" to "regulation of transcription involved in lymphatic endothelial cell fate commitment", Set definition of GO:0060849 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell.", Added definition dbxref GOC:dph to GO:0060849, Added definition dbxref GOC:sdb_2009 to GO:0060849, Added definition dbxref GOC:tb to GO:0060849, Created link GO:0060849 -part_of-> GO:0060838, Created link GO:0060849 -OBO_REL:is_a-> GO:0060850, Assigned namespace "biological_process" to GO:0060849] * Changed name of GO:0060849 from "null" to "regulation of transcription involved in lymphatic endothelial cell fate commitment" * Set definition of GO:0060849 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell." * Added definition dbxref GOC:dph to GO:0060849 * Added definition dbxref GOC:sdb_2009 to GO:0060849 * Added definition dbxref GOC:tb to GO:0060849 * Created link GO:0060849 -part_of-> GO:0060838 * Created link GO:0060849 -OBO_REL:is_a-> GO:0060850 * Assigned namespace "biological_process" to GO:0060849 * [Changed name of GO:0060850 from "null" to "regulation of transcription involved in cell fate commitment", Set definition of GO:0060850 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate.", Added definition dbxref GOC:dph to GO:0060850, Added definition dbxref GOC:sdb_2009 to GO:0060850, Added definition dbxref GOC:tb to GO:0060850, Created link GO:0060850 -OBO_REL:is_a-> GO:0006357, Assigned namespace "biological_process" to GO:0060850] * Changed name of GO:0060850 from "null" to "regulation of transcription involved in cell fate commitment" * Set definition of GO:0060850 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate." * Added definition dbxref GOC:dph to GO:0060850 * Added definition dbxref GOC:sdb_2009 to GO:0060850 * Added definition dbxref GOC:tb to GO:0060850 * Created link GO:0060850 -OBO_REL:is_a-> GO:0006357 * Assigned namespace "biological_process" to GO:0060850 * [Changed name of GO:0060851 from "null" to "vascular endothelial growth factor receptor signaling pathway involved in lymphatic endothelial cell fate commitment", Set definition of GO:0060851 to "The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell fate.", Added definition dbxref GOC:dph to GO:0060851, Added definition dbxref GOC:sdb_2009 to GO:0060851, Added definition dbxref GOC:tb to GO:0060851, Created link GO:0060851 -OBO_REL:is_a-> GO:0048010, Created link GO:0060851 -part_of-> GO:0060838, Assigned namespace "biological_process" to GO:0060851] * Changed name of GO:0060851 from "null" to "vascular endothelial growth factor receptor signaling pathway involved in lymphatic endothelial cell fate commitment" * Set definition of GO:0060851 to "The series of molecular signals generated as a consequence of vascular endothelial growth factor receptor binding to one of its physiological ligands that contributes to the commitment of a venous endothelial cell to a lymphatic endothelial cell fate." * Added definition dbxref GOC:dph to GO:0060851 * Added definition dbxref GOC:sdb_2009 to GO:0060851 * Added definition dbxref GOC:tb to GO:0060851 * Created link GO:0060851 -OBO_REL:is_a-> GO:0048010 * Created link GO:0060851 -part_of-> GO:0060838 * Assigned namespace "biological_process" to GO:0060851 * [Changed name of GO:0060852 from "null" to "regulation of transcription involved in venous endothelial cell fate commitment", Set definition of GO:0060852 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate and contributes to a cell adopting a venous endothelial cell fate.", Added definition dbxref GOC:dph to GO:0060852, Added definition dbxref GOC:sdb_2009 to GO:0060852, Added definition dbxref GOC:tb to GO:0060852, Created link GO:0060852 -OBO_REL:is_a-> GO:0060845, Created link GO:0060852 -OBO_REL:is_a-> GO:0060850, Assigned namespace "biological_process" to GO:0060852] * Changed name of GO:0060852 from "null" to "regulation of transcription involved in venous endothelial cell fate commitment" * Set definition of GO:0060852 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate and contributes to a cell adopting a venous endothelial cell fate." * Added definition dbxref GOC:dph to GO:0060852 * Added definition dbxref GOC:sdb_2009 to GO:0060852 * Added definition dbxref GOC:tb to GO:0060852 * Created link GO:0060852 -OBO_REL:is_a-> GO:0060845 * Created link GO:0060852 -OBO_REL:is_a-> GO:0060850 * Assigned namespace "biological_process" to GO:0060852 * [Changed name of GO:0060853 from "null" to "Notch signaling pathway involved in arterial endothelial cell fate commitment", Set definition of GO:0060853 to "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the commitment of a cell to an arterial endothelial cell fate.", Added definition dbxref GOC:dph to GO:0060853, Added definition dbxref GOC:sdb_2009 to GO:0060853, Added definition dbxref GOC:tb to GO:0060853, Created link GO:0060853 -OBO_REL:is_a-> GO:0007219, Created link GO:0060853 -part_of-> GO:0060844, Assigned namespace "biological_process" to GO:0060853] * Changed name of GO:0060853 from "null" to "Notch signaling pathway involved in arterial endothelial cell fate commitment" * Set definition of GO:0060853 to "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the commitment of a cell to an arterial endothelial cell fate." * Added definition dbxref GOC:dph to GO:0060853 * Added definition dbxref GOC:sdb_2009 to GO:0060853 * Added definition dbxref GOC:tb to GO:0060853 * Created link GO:0060853 -OBO_REL:is_a-> GO:0007219 * Created link GO:0060853 -part_of-> GO:0060844 * Assigned namespace "biological_process" to GO:0060853 * [Changed name of GO:0060854 from "null" to "patterning of lymph vessels", Set definition of GO:0060854 to "The process that regulates the coordinated growth and sprouting of lymph vessels giving rise to the organized lymphatic system.", Added definition dbxref GOC:dph to GO:0060854, Added definition dbxref GOC:sdb_2009 to GO:0060854, Added definition dbxref GOC:tb to GO:0060854, Created link GO:0060854 -part_of-> GO:0001946, Created link GO:0060854 -OBO_REL:is_a-> GO:0007389, Assigned namespace "biological_process" to GO:0060854] * Changed name of GO:0060854 from "null" to "patterning of lymph vessels" * Set definition of GO:0060854 to "The process that regulates the coordinated growth and sprouting of lymph vessels giving rise to the organized lymphatic system." * Added definition dbxref GOC:dph to GO:0060854 * Added definition dbxref GOC:sdb_2009 to GO:0060854 * Added definition dbxref GOC:tb to GO:0060854 * Created link GO:0060854 -part_of-> GO:0001946 * Created link GO:0060854 -OBO_REL:is_a-> GO:0007389 * Assigned namespace "biological_process" to GO:0060854 * [Changed name of GO:0060855 from "null" to "venous endothelial cell migration involved in lymph vessel development", Set definition of GO:0060855 to "The orderly movement of venous endothelial cells out of the veins giving rise to the precursors of lymphatic endothelial cells.", Added definition dbxref GOC:dph to GO:0060855, Added definition dbxref GOC:sdb_2009 to GO:0060855, Added definition dbxref GOC:tb to GO:0060855, Created link GO:0060855 -OBO_REL:is_a-> GO:0043534, Created link GO:0060855 -part_of-> GO:0001945, Assigned namespace "biological_process" to GO:0060855] * Changed name of GO:0060855 from "null" to "venous endothelial cell migration involved in lymph vessel development" * Set definition of GO:0060855 to "The orderly movement of venous endothelial cells out of the veins giving rise to the precursors of lymphatic endothelial cells." * Added definition dbxref GOC:dph to GO:0060855 * Added definition dbxref GOC:sdb_2009 to GO:0060855 * Added definition dbxref GOC:tb to GO:0060855 * Created link GO:0060855 -OBO_REL:is_a-> GO:0043534 * Created link GO:0060855 -part_of-> GO:0001945 * Assigned namespace "biological_process" to GO:0060855 * [Changed name of GO:0060856 from "null" to "establishment of blood-brain barrier", Set definition of GO:0060856 to "Establishment of the barrier between the blood and the brain. The cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier.", Added definition dbxref GOC:dph to GO:0060856, Added definition dbxref GOC:sart to GO:0060856, Created link GO:0060856 -OBO_REL:is_a-> GO:0048468, Assigned namespace "biological_process" to GO:0060856] * Changed name of GO:0060856 from "null" to "establishment of blood-brain barrier" * Set definition of GO:0060856 to "Establishment of the barrier between the blood and the brain. The cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier." * Added definition dbxref GOC:dph to GO:0060856 * Added definition dbxref GOC:sart to GO:0060856 * Created link GO:0060856 -OBO_REL:is_a-> GO:0048468 * Assigned namespace "biological_process" to GO:0060856 * [Changed name of GO:0060857 from "null" to "establishment of glial blood-brain barrier", Set definition of GO:0060857 to "Establishment of the glial barrier between the blood and the brain. The glial cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier.", Added definition dbxref GOC:dph to GO:0060857, Added definition dbxref GOC:sart to GO:0060857, Created link GO:0060857 -OBO_REL:is_a-> GO:0021782, Created link GO:0060857 -OBO_REL:is_a-> GO:0060856, Assigned namespace "biological_process" to GO:0060857] * Changed name of GO:0060857 from "null" to "establishment of glial blood-brain barrier" * Set definition of GO:0060857 to "Establishment of the glial barrier between the blood and the brain. The glial cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier." * Added definition dbxref GOC:dph to GO:0060857 * Added definition dbxref GOC:sart to GO:0060857 * Created link GO:0060857 -OBO_REL:is_a-> GO:0021782 * Created link GO:0060857 -OBO_REL:is_a-> GO:0060856 * Assigned namespace "biological_process" to GO:0060857 * [Changed name of GO:0060858 from "null" to "vesicle-mediated transport involved in floral organ abscission", Set definition of GO:0060858 to "The directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ.", Added definition dbxref GOC:dph to GO:0060858, Added definition dbxref GOC:sdb_2009 to GO:0060858, Added definition dbxref GOC:tb to GO:0060858, Added synonym "membrane trafficking involved in floral organ shedding" to GO:0060858, Added general dbxref GOC:tb to synonym membrane trafficking involved in floral organ shedding of GO:0060858, Added general dbxref GOC:sdb_2009 to synonym membrane trafficking involved in floral organ shedding of GO:0060858, Added general dbxref GOC:dph to synonym membrane trafficking involved in floral organ shedding of GO:0060858, Created link GO:0060858 -part_of-> GO:0010227, Created link GO:0060858 -OBO_REL:is_a-> GO:0016192, Assigned namespace "biological_process" to GO:0060858] * Changed name of GO:0060858 from "null" to "vesicle-mediated transport involved in floral organ abscission" * Set definition of GO:0060858 to "The directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ." * Added definition dbxref GOC:dph to GO:0060858 * Added definition dbxref GOC:sdb_2009 to GO:0060858 * Added definition dbxref GOC:tb to GO:0060858 * Added synonym "membrane trafficking involved in floral organ shedding" to GO:0060858 * Added general dbxref GOC:tb to synonym membrane trafficking involved in floral organ shedding of GO:0060858 * Added general dbxref GOC:sdb_2009 to synonym membrane trafficking involved in floral organ shedding of GO:0060858 * Added general dbxref GOC:dph to synonym membrane trafficking involved in floral organ shedding of GO:0060858 * Created link GO:0060858 -part_of-> GO:0010227 * Created link GO:0060858 -OBO_REL:is_a-> GO:0016192 * Assigned namespace "biological_process" to GO:0060858 * [Changed name of GO:0060859 from "null" to "regulation of vesicle-mediated transport involved in floral organ abscission", Set definition of GO:0060859 to "Any process that modulates the rate, frequency, or extent of the directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ.", Added definition dbxref GOC:dph to GO:0060859, Added definition dbxref GOC:sdb_2009 to GO:0060859, Added definition dbxref GOC:tb to GO:0060859, Created link GO:0060859 -regulates-> GO:0060858, Created link GO:0060859 -OBO_REL:is_a-> GO:0060860, Created link GO:0060859 -OBO_REL:is_a-> GO:0060627, Assigned namespace "biological_process" to GO:0060859] * Changed name of GO:0060859 from "null" to "regulation of vesicle-mediated transport involved in floral organ abscission" * Set definition of GO:0060859 to "Any process that modulates the rate, frequency, or extent of the directed movement of substances within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane which are then targeted to, and fuse with, an acceptor membrane contributing to the shedding of a floral organ." * Added definition dbxref GOC:dph to GO:0060859 * Added definition dbxref GOC:sdb_2009 to GO:0060859 * Added definition dbxref GOC:tb to GO:0060859 * Created link GO:0060859 -regulates-> GO:0060858 * Created link GO:0060859 -OBO_REL:is_a-> GO:0060860 * Created link GO:0060859 -OBO_REL:is_a-> GO:0060627 * Assigned namespace "biological_process" to GO:0060859 * [Changed name of GO:0060860 from "null" to "regulation of floral organ abscission", Set definition of GO:0060860 to "Any process that modulates the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs.", Added definition dbxref GOC:dph to GO:0060860, Added definition dbxref GOC:sdb_2009 to GO:0060860, Added definition dbxref GOC:tb to GO:0060860, Created link GO:0060860 -OBO_REL:is_a-> GO:0050793, Created link GO:0060860 -regulates-> GO:0010227, Assigned namespace "biological_process" to GO:0060860] * Changed name of GO:0060860 from "null" to "regulation of floral organ abscission" * Set definition of GO:0060860 to "Any process that modulates the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs." * Added definition dbxref GOC:dph to GO:0060860 * Added definition dbxref GOC:sdb_2009 to GO:0060860 * Added definition dbxref GOC:tb to GO:0060860 * Created link GO:0060860 -OBO_REL:is_a-> GO:0050793 * Created link GO:0060860 -regulates-> GO:0010227 * Assigned namespace "biological_process" to GO:0060860 * [Changed name of GO:0060861 from "null" to "positive regulation of floral organ abscission", Set definition of GO:0060861 to "Any process that increases the rate, frequency, or extent of floral organ shedding, the controlled shedding of floral organs.", Added definition dbxref GOC:dph to GO:0060861, Added definition dbxref GOC:sdb_2009 to GO:0060861, Added definition dbxref GOC:tb to GO:0060861, Created link GO:0060861 -OBO_REL:is_a-> GO:0051094, Created link GO:0060861 -OBO_REL:is_a-> GO:0060860, Created link GO:0060861 -positively_regulates-> GO:0010227, Assigned namespace "biological_process" to GO:0060861] * Changed name of GO:0060861 from "null" to "positive regulation of floral organ abscission" * Set definition of GO:0060861 to "Any process that increases the rate, frequency, or extent of floral organ shedding, the controlled shedding of floral organs." * Added definition dbxref GOC:dph to GO:0060861 * Added definition dbxref GOC:sdb_2009 to GO:0060861 * Added definition dbxref GOC:tb to GO:0060861 * Created link GO:0060861 -OBO_REL:is_a-> GO:0051094 * Created link GO:0060861 -OBO_REL:is_a-> GO:0060860 * Created link GO:0060861 -positively_regulates-> GO:0010227 * Assigned namespace "biological_process" to GO:0060861 * [Changed name of GO:0060862 from "null" to "negative regulation of floral organ abscission", Set definition of GO:0060862 to "Any process that decreases the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs.", Added definition dbxref GOC:dph to GO:0060862, Added definition dbxref GOC:sdb_2009 to GO:0060862, Added definition dbxref GOC:tb to GO:0060862, Created link GO:0060862 -negatively_regulates-> GO:0010227, Created link GO:0060862 -OBO_REL:is_a-> GO:0060860, Assigned namespace "biological_process" to GO:0060862] * Changed name of GO:0060862 from "null" to "negative regulation of floral organ abscission" * Set definition of GO:0060862 to "Any process that decreases the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs." * Added definition dbxref GOC:dph to GO:0060862 * Added definition dbxref GOC:sdb_2009 to GO:0060862 * Added definition dbxref GOC:tb to GO:0060862 * Created link GO:0060862 -negatively_regulates-> GO:0010227 * Created link GO:0060862 -OBO_REL:is_a-> GO:0060860 * Assigned namespace "biological_process" to GO:0060862 * [Changed name of GO:0060863 from "null" to "regulation of floral organ abscission by signal transduction", Set definition of GO:0060863 to "The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately modulating the rate, or extent of floral organ abscission.", Added definition dbxref GOC:dph to GO:0060863, Added definition dbxref GOC:sdb_2009 to GO:0060863, Added definition dbxref GOC:tb to GO:0060863, Created link GO:0060863 -OBO_REL:is_a-> GO:0007165, Created link GO:0060863 -OBO_REL:is_a-> GO:0060860, Assigned namespace "biological_process" to GO:0060863] * Changed name of GO:0060863 from "null" to "regulation of floral organ abscission by signal transduction" * Set definition of GO:0060863 to "The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately modulating the rate, or extent of floral organ abscission." * Added definition dbxref GOC:dph to GO:0060863 * Added definition dbxref GOC:sdb_2009 to GO:0060863 * Added definition dbxref GOC:tb to GO:0060863 * Created link GO:0060863 -OBO_REL:is_a-> GO:0007165 * Created link GO:0060863 -OBO_REL:is_a-> GO:0060860 * Assigned namespace "biological_process" to GO:0060863 * [Changed name of GO:0060864 from "null" to "positive regulation of floral organ abscission by small GTPase mediated signal transduction", Set definition of GO:0060864 to "Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that increases the rate or extent of floral organ abscission.", Added definition dbxref GOC:dph to GO:0060864, Added definition dbxref GOC:sdb_2009 to GO:0060864, Added definition dbxref GOC:tb to GO:0060864, Created link GO:0060864 -OBO_REL:is_a-> GO:0060861, Created link GO:0060864 -OBO_REL:is_a-> GO:0060863, Created link GO:0060864 -OBO_REL:is_a-> GO:0007264, Assigned namespace "biological_process" to GO:0060864] * Changed name of GO:0060864 from "null" to "positive regulation of floral organ abscission by small GTPase mediated signal transduction" * Set definition of GO:0060864 to "Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that increases the rate or extent of floral organ abscission." * Added definition dbxref GOC:dph to GO:0060864 * Added definition dbxref GOC:sdb_2009 to GO:0060864 * Added definition dbxref GOC:tb to GO:0060864 * Created link GO:0060864 -OBO_REL:is_a-> GO:0060861 * Created link GO:0060864 -OBO_REL:is_a-> GO:0060863 * Created link GO:0060864 -OBO_REL:is_a-> GO:0007264 * Assigned namespace "biological_process" to GO:0060864 * [Changed name of GO:0060865 from "null" to "negative regulation of floral organ abscission by transmembrane receptor protein serine/threonine kinase signaling pathway", Set definition of GO:0060865 to "The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand and contributing to the decrease in the rate or frequency of floral organ abscission.", Added definition dbxref GOC:dph to GO:0060865, Added definition dbxref GOC:sdb_2009 to GO:0060865, Added definition dbxref GOC:tb to GO:0060865, Created link GO:0060865 -OBO_REL:is_a-> GO:0007178, Created link GO:0060865 -OBO_REL:is_a-> GO:0060862, Assigned namespace "biological_process" to GO:0060865] * Changed name of GO:0060865 from "null" to "negative regulation of floral organ abscission by transmembrane receptor protein serine/threonine kinase signaling pathway" * Set definition of GO:0060865 to "The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand and contributing to the decrease in the rate or frequency of floral organ abscission." * Added definition dbxref GOC:dph to GO:0060865 * Added definition dbxref GOC:sdb_2009 to GO:0060865 * Added definition dbxref GOC:tb to GO:0060865 * Created link GO:0060865 -OBO_REL:is_a-> GO:0007178 * Created link GO:0060865 -OBO_REL:is_a-> GO:0060862 * Assigned namespace "biological_process" to GO:0060865 * [Changed name of GO:0060866 from "null" to "leaf abscission", Set definition of GO:0060866 to "The controlled shedding of a leaf.", Added definition dbxref GOC:dph to GO:0060866, Added definition dbxref GOC:sdb_2009 to GO:0060866, Added definition dbxref GOC:tb to GO:0060866, Created link GO:0060866 -OBO_REL:is_a-> GO:0009838, Assigned namespace "biological_process" to GO:0060866] * Changed name of GO:0060866 from "null" to "leaf abscission" * Set definition of GO:0060866 to "The controlled shedding of a leaf." * Added definition dbxref GOC:dph to GO:0060866 * Added definition dbxref GOC:sdb_2009 to GO:0060866 * Added definition dbxref GOC:tb to GO:0060866 * Created link GO:0060866 -OBO_REL:is_a-> GO:0009838 * Assigned namespace "biological_process" to GO:0060866 * [Changed name of GO:0060867 from "null" to "fruit abscission", Set definition of GO:0060867 to "The controlled shedding of a fruit.", Added definition dbxref GOC:dph to GO:0060867, Added definition dbxref GOC:sdb_2009 to GO:0060867, Added definition dbxref GOC:tb to GO:0060867, Created link GO:0060867 -OBO_REL:is_a-> GO:0009838, Assigned namespace "biological_process" to GO:0060867] * Changed name of GO:0060867 from "null" to "fruit abscission" * Set definition of GO:0060867 to "The controlled shedding of a fruit." * Added definition dbxref GOC:dph to GO:0060867 * Added definition dbxref GOC:sdb_2009 to GO:0060867 * Added definition dbxref GOC:tb to GO:0060867 * Created link GO:0060867 -OBO_REL:is_a-> GO:0009838 * Assigned namespace "biological_process" to GO:0060867 * [Changed name of GO:0060868 from "null" to "regulation of vesicle-mediated transport involved in floral organ abscission by small GTPase mediated signal transduction", Set definition of GO:0060868 to "Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that modulates the rate or extent of floral organ abscission.", Added definition dbxref GOC:dph to GO:0060868, Added definition dbxref GOC:sdb_2009 to GO:0060868, Added definition dbxref GOC:tb to GO:0060868, Created link GO:0060868 -OBO_REL:is_a-> GO:0007264, Created link GO:0060868 -OBO_REL:is_a-> GO:0060859, Assigned namespace "biological_process" to GO:0060868] * Changed name of GO:0060868 from "null" to "regulation of vesicle-mediated transport involved in floral organ abscission by small GTPase mediated signal transduction" * Set definition of GO:0060868 to "Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals that modulates the rate or extent of floral organ abscission." * Added definition dbxref GOC:dph to GO:0060868 * Added definition dbxref GOC:sdb_2009 to GO:0060868 * Added definition dbxref GOC:tb to GO:0060868 * Created link GO:0060868 -OBO_REL:is_a-> GO:0007264 * Created link GO:0060868 -OBO_REL:is_a-> GO:0060859 * Assigned namespace "biological_process" to GO:0060868 * [Changed name of GO:0060869 from "null" to "transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission", Set definition of GO:0060869 to "The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand that contributes to the process of floral organ abscission.", Added definition dbxref GOC:dph to GO:0060869, Added definition dbxref GOC:sdb_2009 to GO:0060869, Added definition dbxref GOC:tb to GO:0060869, Created link GO:0060869 -part_of-> GO:0010227, Created link GO:0060869 -OBO_REL:is_a-> GO:0007178, Assigned namespace "biological_process" to GO:0060869] * Changed name of GO:0060869 from "null" to "transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission" * Set definition of GO:0060869 to "The series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand that contributes to the process of floral organ abscission." * Added definition dbxref GOC:dph to GO:0060869 * Added definition dbxref GOC:sdb_2009 to GO:0060869 * Added definition dbxref GOC:tb to GO:0060869 * Created link GO:0060869 -part_of-> GO:0010227 * Created link GO:0060869 -OBO_REL:is_a-> GO:0007178 * Assigned namespace "biological_process" to GO:0060869 * [Changed name of GO:0060870 from "null" to "cell wall disassembly involved in floral organ abscission", Set definition of GO:0060870 to "A cellular process that results in the breakdown of the cell wall that contributes to the process of floral organ abscission.", Added definition dbxref GOC:dph to GO:0060870, Added definition dbxref GOC:sdb_2009 to GO:0060870, Added definition dbxref GOC:tb to GO:0060870, Created link GO:0060870 -part_of-> GO:0010227, Created link GO:0060870 -OBO_REL:is_a-> GO:0009830, Assigned namespace "biological_process" to GO:0060870] * Changed name of GO:0060870 from "null" to "cell wall disassembly involved in floral organ abscission" * Set definition of GO:0060870 to "A cellular process that results in the breakdown of the cell wall that contributes to the process of floral organ abscission." * Added definition dbxref GOC:dph to GO:0060870 * Added definition dbxref GOC:sdb_2009 to GO:0060870 * Added definition dbxref GOC:tb to GO:0060870 * Created link GO:0060870 -part_of-> GO:0010227 * Created link GO:0060870 -OBO_REL:is_a-> GO:0009830 * Assigned namespace "biological_process" to GO:0060870 * [Changed name of GO:0060871 from "null" to "cell wall disassembly", Set definition of GO:0060871 to "A cellular process that results in the breakdown of the cell wall.", Added definition dbxref GOC:dph to GO:0060871, Added definition dbxref GOC:sdb_2009 to GO:0060871, Added definition dbxref GOC:tb to GO:0060871, Created link GO:0060871 -OBO_REL:is_a-> GO:0022411, Assigned namespace "biological_process" to GO:0060871] * Changed name of GO:0060871 from "null" to "cell wall disassembly" * Set definition of GO:0060871 to "A cellular process that results in the breakdown of the cell wall." * Added definition dbxref GOC:dph to GO:0060871 * Added definition dbxref GOC:sdb_2009 to GO:0060871 * Added definition dbxref GOC:tb to GO:0060871 * Created link GO:0060871 -OBO_REL:is_a-> GO:0022411 * Assigned namespace "biological_process" to GO:0060871 * [Changed name of GO:0090061 from "null" to "regulation of cellular morphogenesis during vegetative growth", Set definition of GO:0090061 to "Any process that modulates the frequency, rate, or extent of cellular morphogenesis during vegetative growth. Cellular morphogenesis during vegetative growth is the change in form (cell shape and size) that occurs during the development of a cell as it progresses through a mitotic cell cycle when it is not undergoing terminal differentiation.", Added definition dbxref GOC:dph to GO:0090061, Added definition dbxref GOC:tb to GO:0090061, Created link GO:0090061 -OBO_REL:is_a-> GO:0022604, Created link GO:0090061 -regulates-> GO:0000903, Assigned namespace "biological_process" to GO:0090061] * Changed name of GO:0090061 from "null" to "regulation of cellular morphogenesis during vegetative growth" * Set definition of GO:0090061 to "Any process that modulates the frequency, rate, or extent of cellular morphogenesis during vegetative growth. Cellular morphogenesis during vegetative growth is the change in form (cell shape and size) that occurs during the development of a cell as it progresses through a mitotic cell cycle when it is not undergoing terminal differentiation." * Added definition dbxref GOC:dph to GO:0090061 * Added definition dbxref GOC:tb to GO:0090061 * Created link GO:0090061 -OBO_REL:is_a-> GO:0022604 * Created link GO:0090061 -regulates-> GO:0000903 * Assigned namespace "biological_process" to GO:0090061 * [Changed name of GO:0090062 from "null" to "regulation of trehalose metabolic process", Set definition of GO:0090062 to "Any process that modulates the frequency, rate or extent of trehalose metabolism, the chemical reactions and pathways involving trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.", Added definition dbxref GOC:dph to GO:0090062, Added definition dbxref GOC:tb to GO:0090062, Created link GO:0090062 -regulates-> GO:0005991, Created link GO:0090062 -OBO_REL:is_a-> GO:0010675, Assigned namespace "biological_process" to GO:0090062] * Changed name of GO:0090062 from "null" to "regulation of trehalose metabolic process" * Set definition of GO:0090062 to "Any process that modulates the frequency, rate or extent of trehalose metabolism, the chemical reactions and pathways involving trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi." * Added definition dbxref GOC:dph to GO:0090062 * Added definition dbxref GOC:tb to GO:0090062 * Created link GO:0090062 -regulates-> GO:0005991 * Created link GO:0090062 -OBO_REL:is_a-> GO:0010675 * Assigned namespace "biological_process" to GO:0090062 * [Changed name of GO:0090063 from "null" to "positive regulation of microtubule nucleation", Set definition of GO:0090063 to "Any process that increases the rate, frequency or extent of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell.", Added definition dbxref GOC:dph to GO:0090063, Added definition dbxref GOC:tb to GO:0090063, Created link GO:0090063 -OBO_REL:is_a-> GO:0010968, Created link GO:0090063 -positively_regulates-> GO:0007020, Assigned namespace "biological_process" to GO:0090063] * Changed name of GO:0090063 from "null" to "positive regulation of microtubule nucleation" * Set definition of GO:0090063 to "Any process that increases the rate, frequency or extent of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell." * Added definition dbxref GOC:dph to GO:0090063 * Added definition dbxref GOC:tb to GO:0090063 * Created link GO:0090063 -OBO_REL:is_a-> GO:0010968 * Created link GO:0090063 -positively_regulates-> GO:0007020 * Assigned namespace "biological_process" to GO:0090063 * [Changed name of GO:0090064 from "null" to "activation of microtubule nucleation", Set definition of GO:0090064 to "Any process that starts the inactive process of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell.", Added definition dbxref GOC:dph to GO:0090064, Added definition dbxref GOC:tb to GO:0090064, Created link GO:0090064 -OBO_REL:is_a-> GO:0090063, Assigned namespace "biological_process" to GO:0090064] * Changed name of GO:0090064 from "null" to "activation of microtubule nucleation" * Set definition of GO:0090064 to "Any process that starts the inactive process of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell." * Added definition dbxref GOC:dph to GO:0090064 * Added definition dbxref GOC:tb to GO:0090064 * Created link GO:0090064 -OBO_REL:is_a-> GO:0090063 * Assigned namespace "biological_process" to GO:0090064 * [Changed name of GO:0090065 from "null" to "regulation of RNA interference, production of siRNA", Set definition of GO:0090065 to "Any process that modulates the frequency, rate or extent of RNA interference by the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides.", Added definition dbxref GOC:dph to GO:0090065, Added definition dbxref GOC:tb to GO:0090065, Created link GO:0090065 -regulates-> GO:0030422, Created link GO:0090065 -OBO_REL:is_a-> GO:0051252, Assigned namespace "biological_process" to GO:0090065] * Changed name of GO:0090065 from "null" to "regulation of RNA interference, production of siRNA" * Set definition of GO:0090065 to "Any process that modulates the frequency, rate or extent of RNA interference by the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides." * Added definition dbxref GOC:dph to GO:0090065 * Added definition dbxref GOC:tb to GO:0090065 * Created link GO:0090065 -regulates-> GO:0030422 * Created link GO:0090065 -OBO_REL:is_a-> GO:0051252 * Assigned namespace "biological_process" to GO:0090065 * Deleted GO:0001569 --OBO_REL:is_a--> GO:0009880 * Created link GO:0001569 -OBO_REL:is_a-> GO:0007389 * Changed name of GO:0002044 from "blood vessel endothelial cell migration during intussusceptive angiogenesis" to "blood vessel endothelial cell migration involved in intussusceptive angiogenesis" * Changed name of GO:0009830 from "cell wall modification during abscission" to "cell wall disassembly involved in abscission" * Changed definition of GO:0009830 from "The series of events that occur during abscission that result in chemical and structural alterations of existing cell walls." to "A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission." * Added definition dbxref GOC:dph to GO:0009830 * Added definition dbxref GOC:sdb_2009 to GO:0009830 * Added definition dbxref GOC:tb to GO:0009830 * Created link GO:0009830 -OBO_REL:is_a-> GO:0060871 * Created link GO:0010957 -OBO_REL:is_a-> GO:0045939 * Added definition dbxref GOC:dph to GO:0014045 * Added definition dbxref GOC:sart to GO:0014045 * Created link GO:0014045 -OBO_REL:is_a-> GO:0060856 * Changed name of GO:0021876 from "Notch signaling pathway in forebrain neuroblast division" to "Notch signaling pathway involved in forebrain neuroblast division" * Created link GO:0042068 -OBO_REL:is_a-> GO:0051171 * Created link GO:0044126 -OBO_REL:is_a-> GO:0040008 * Created link GO:0044127 -OBO_REL:is_a-> GO:0050793 * Created link GO:0044128 -OBO_REL:is_a-> GO:0045927 * Created link GO:0044129 -OBO_REL:is_a-> GO:0051094 * Created link GO:0044130 -OBO_REL:is_a-> GO:0045926 * Created link GO:0044131 -OBO_REL:is_a-> GO:0051093 * Created link GO:0044138 -OBO_REL:is_a-> GO:0050793 * Created link GO:0044140 -OBO_REL:is_a-> GO:0045926 * Created link GO:0044141 -OBO_REL:is_a-> GO:0051093 * Created link GO:0044142 -OBO_REL:is_a-> GO:0045927 * Created link GO:0044143 -OBO_REL:is_a-> GO:0051094 * Created link GO:0044144 -OBO_REL:is_a-> GO:0040008 * Created link GO:0044146 -OBO_REL:is_a-> GO:0045926 * Created link GO:0044147 -OBO_REL:is_a-> GO:0051093 * Created link GO:0044148 -OBO_REL:is_a-> GO:0045927 * Created link GO:0044149 -OBO_REL:is_a-> GO:0051094 * Created link GO:0045863 -OBO_REL:is_a-> GO:0051172 * Created link GO:0045864 -OBO_REL:is_a-> GO:0051173 * Created link GO:0048844 -part_of-> GO:0060840 * Created link GO:0048845 -part_of-> GO:0060841 * Created link GO:0060556 -OBO_REL:is_a-> GO:0050810 * Created link GO:0060557 -OBO_REL:is_a-> GO:0045940 * Created link GO:0060796 -OBO_REL:is_a-> GO:0060850 * Created link GO:0060827 -OBO_REL:is_a-> GO:0045995 * Created link GO:0060827 -OBO_REL:is_a-> GO:0022603 * Changed definition of GO:0060835 from "x." to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands that contributes to the specification of the oral/aboral axis." * Added synonym "regulation of fungal type cell wall 1,3-alpha-glucan biosynthetic process" to GO:0070610 * Added general dbxref GOC:tb to synonym regulation of fungal type cell wall 1,3-alpha-glucan biosynthetic process of GO:0070610 * Added general dbxref GOC:dph to synonym regulation of fungal type cell wall 1,3-alpha-glucan biosynthetic process of GO:0070610 * Created link GO:0075007 -OBO_REL:is_a-> GO:0043902 * Created link GO:0075008 -OBO_REL:is_a-> GO:0043901 * Created link GO:0090028 -OBO_REL:is_a-> GO:0045745 * Created link GO:0090028 -OBO_REL:is_a-> GO:0060239 * Created link GO:0090029 -OBO_REL:is_a-> GO:0060240 * Created link GO:0090029 -OBO_REL:is_a-> GO:0045744 From gocvs at genome.stanford.edu Thu Aug 13 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 13 Aug 2009 21:30:12 -0700 Subject: [Go-diff] GO update 08/13/2009 Message-ID: <200908140430.n7E4UCPx019539@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.748 by 1.752 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060872 * Created object of type obo:TERM with id GO:0060873 * Created object of type obo:TERM with id GO:0060874 * Created object of type obo:TERM with id GO:0060875 * Created object of type obo:TERM with id GO:0060876 * Created object of type obo:TERM with id GO:0060877 * Created object of type obo:TERM with id GO:0060878 * Created object of type obo:TERM with id GO:0060879 * Created object of type obo:TERM with id GO:0060880 * Created object of type obo:TERM with id GO:0060881 * Created object of type obo:TERM with id GO:0060882 * Created object of type obo:TERM with id GO:0060883 * Created object of type obo:TERM with id GO:0060884 * Created object of type obo:TERM with id GO:0060885 * Created object of type obo:TERM with id GO:0060886 * Created object of type obo:TERM with id GO:0060887 * Created object of type obo:TERM with id GO:0060888 * Created object of type obo:TERM with id GO:0060889 * Created object of type obo:TERM with id GO:0060890 * Created object of type obo:TERM with id GO:0060891 * Created object of type obo:TERM with id GO:0060892 * Created object of type obo:TERM with id GO:0060893 * Created object of type obo:TERM with id GO:0060894 * Created object of type obo:TERM with id GO:0060895 * Created object of type obo:TERM with id GO:0060896 * Created object of type obo:TERM with id GO:0060897 * Created object of type obo:TERM with id GO:0060898 * Created object of type obo:TERM with id GO:0060899 * Created object of type obo:TERM with id GO:0060900 * Created object of type obo:TERM with id GO:0060901 * Created object of type obo:TERM with id GO:0060902 * Created object of type obo:TERM with id GO:0070853 * Created object of type obo:TERM with id GO:0070854 * Created object of type obo:TERM with id GO:0070855 * Created object of type obo:TERM with id GO:0070856 * [Changed name of GO:0060872 from "null" to "semicircular canal development", Set definition of GO:0060872 to "The progression of the semicircular canal from its initial formation to the mature structure.", Added definition dbxref GOC:dph to GO:0060872, Added definition dbxref GOC:sdb_2009 to GO:0060872, Added definition dbxref GOC:tb to GO:0060872, Created link GO:0060872 -part_of-> GO:0048839, Created link GO:0060872 -OBO_REL:is_a-> GO:0048856, Assigned namespace "biological_process" to GO:0060872] * Changed name of GO:0060872 from "null" to "semicircular canal development" * Set definition of GO:0060872 to "The progression of the semicircular canal from its initial formation to the mature structure." * Added definition dbxref GOC:dph to GO:0060872 * Added definition dbxref GOC:sdb_2009 to GO:0060872 * Added definition dbxref GOC:tb to GO:0060872 * Created link GO:0060872 -part_of-> GO:0048839 * Created link GO:0060872 -OBO_REL:is_a-> GO:0048856 * Assigned namespace "biological_process" to GO:0060872 * [Changed name of GO:0060873 from "null" to "anterior semicircular canal development", Set definition of GO:0060873 to "The progession of the anterior semicircular canal from its initial formation to the mature structure.", Added definition dbxref GOC:dph to GO:0060873, Added definition dbxref GOC:sdb_2009 to GO:0060873, Added definition dbxref GOC:tb to GO:0060873, Created link GO:0060873 -OBO_REL:is_a-> GO:0060872, Assigned namespace "biological_process" to GO:0060873] * Changed name of GO:0060873 from "null" to "anterior semicircular canal development" * Set definition of GO:0060873 to "The progession of the anterior semicircular canal from its initial formation to the mature structure." * Added definition dbxref GOC:dph to GO:0060873 * Added definition dbxref GOC:sdb_2009 to GO:0060873 * Added definition dbxref GOC:tb to GO:0060873 * Created link GO:0060873 -OBO_REL:is_a-> GO:0060872 * Assigned namespace "biological_process" to GO:0060873 * [Changed name of GO:0060874 from "null" to "posterior semicircular canal development", Set definition of GO:0060874 to "The progession of the posterior semicircular canal from its initial formation to the mature structure.", Added definition dbxref GOC:dph to GO:0060874, Added definition dbxref GOC:sdb_2009 to GO:0060874, Added definition dbxref GOC:tb to GO:0060874, Created link GO:0060874 -OBO_REL:is_a-> GO:0060872, Assigned namespace "biological_process" to GO:0060874] * Changed name of GO:0060874 from "null" to "posterior semicircular canal development" * Set definition of GO:0060874 to "The progession of the posterior semicircular canal from its initial formation to the mature structure." * Added definition dbxref GOC:dph to GO:0060874 * Added definition dbxref GOC:sdb_2009 to GO:0060874 * Added definition dbxref GOC:tb to GO:0060874 * Created link GO:0060874 -OBO_REL:is_a-> GO:0060872 * Assigned namespace "biological_process" to GO:0060874 * [Changed name of GO:0060875 from "null" to "lateral semicircular canal development", Set definition of GO:0060875 to "The progession of the lateral semicircular canal from its initial formation to the mature structure.", Added definition dbxref GOC:dph to GO:0060875, Added definition dbxref GOC:sdb_2009 to GO:0060875, Added definition dbxref GOC:tb to GO:0060875, Created link GO:0060875 -OBO_REL:is_a-> GO:0060872, Assigned namespace "biological_process" to GO:0060875] * Changed name of GO:0060875 from "null" to "lateral semicircular canal development" * Set definition of GO:0060875 to "The progession of the lateral semicircular canal from its initial formation to the mature structure." * Added definition dbxref GOC:dph to GO:0060875 * Added definition dbxref GOC:sdb_2009 to GO:0060875 * Added definition dbxref GOC:tb to GO:0060875 * Created link GO:0060875 -OBO_REL:is_a-> GO:0060872 * Assigned namespace "biological_process" to GO:0060875 * [Changed name of GO:0060876 from "null" to "semicircular canal formation", Set definition of GO:0060876 to "The developmental process pertaining to the initial formation of the semicircular canal from the otic vesicle. This process begins with the regionalization of the vesicle that specifies the area where the vesicles will form and continues through the process of fusion which forms the initial tubes.", Added definition dbxref GOC:dph to GO:0060876, Added definition dbxref GOC:sdb_2009 to GO:0060876, Added definition dbxref GOC:tb to GO:0060876, Created link GO:0060876 -OBO_REL:is_a-> GO:0048646, Created link GO:0060876 -part_of-> GO:0048752, Assigned namespace "biological_process" to GO:0060876] * Changed name of GO:0060876 from "null" to "semicircular canal formation" * Set definition of GO:0060876 to "The developmental process pertaining to the initial formation of the semicircular canal from the otic vesicle. This process begins with the regionalization of the vesicle that specifies the area where the vesicles will form and continues through the process of fusion which forms the initial tubes." * Added definition dbxref GOC:dph to GO:0060876 * Added definition dbxref GOC:sdb_2009 to GO:0060876 * Added definition dbxref GOC:tb to GO:0060876 * Created link GO:0060876 -OBO_REL:is_a-> GO:0048646 * Created link GO:0060876 -part_of-> GO:0048752 * Assigned namespace "biological_process" to GO:0060876 * [Changed name of GO:0060877 from "null" to "regionalization involved in semicircular canal formation", Set definition of GO:0060877 to "The pattern specification process by which the otic epithelium is subdivided in space to define an area or volume in which cells will differentiate to give rise to the semicircular canals.", Added definition dbxref GOC:dph to GO:0060877, Added definition dbxref GOC:sdb_2009 to GO:0060877, Added definition dbxref GOC:tb to GO:0060877, Created link GO:0060877 -OBO_REL:is_a-> GO:0003002, Created link GO:0060877 -part_of-> GO:0060876, Assigned namespace "biological_process" to GO:0060877] * Changed name of GO:0060877 from "null" to "regionalization involved in semicircular canal formation" * Set definition of GO:0060877 to "The pattern specification process by which the otic epithelium is subdivided in space to define an area or volume in which cells will differentiate to give rise to the semicircular canals." * Added definition dbxref GOC:dph to GO:0060877 * Added definition dbxref GOC:sdb_2009 to GO:0060877 * Added definition dbxref GOC:tb to GO:0060877 * Created link GO:0060877 -OBO_REL:is_a-> GO:0003002 * Created link GO:0060877 -part_of-> GO:0060876 * Assigned namespace "biological_process" to GO:0060877 * [Changed name of GO:0060878 from "null" to "pouch outgrowth involved in semicircular canal formation", Set definition of GO:0060878 to "The morphogenetic process by which an epithelial sheet bends along a linear axis and gives rise to a pouch that will form a semicircular canal.", Added definition dbxref GOC:dph to GO:0060878, Added definition dbxref GOC:sdb_2009 to GO:0060878, Added definition dbxref GOC:tb to GO:0060878, Created link GO:0060878 -part_of-> GO:0060876, Created link GO:0060878 -OBO_REL:is_a-> GO:0002009, Created link GO:0060878 -OBO_REL:is_a-> GO:0060571, Assigned namespace "biological_process" to GO:0060878] * Changed name of GO:0060878 from "null" to "pouch outgrowth involved in semicircular canal formation" * Set definition of GO:0060878 to "The morphogenetic process by which an epithelial sheet bends along a linear axis and gives rise to a pouch that will form a semicircular canal." * Added definition dbxref GOC:dph to GO:0060878 * Added definition dbxref GOC:sdb_2009 to GO:0060878 * Added definition dbxref GOC:tb to GO:0060878 * Created link GO:0060878 -part_of-> GO:0060876 * Created link GO:0060878 -OBO_REL:is_a-> GO:0002009 * Created link GO:0060878 -OBO_REL:is_a-> GO:0060571 * Assigned namespace "biological_process" to GO:0060878 * [Changed name of GO:0060879 from "null" to "semicircular canal fusion", Set definition of GO:0060879 to "Creation of the central hole of the semicircular canal by sealing the edges of the pouch that forms ruing the process of semicircular canal formation.", Added definition dbxref GOC:dph to GO:0060879, Added definition dbxref GOC:sdb_2009 to GO:0060879, Added definition dbxref GOC:tb to GO:0060879, Created link GO:0060879 -part_of-> GO:0060876, Created link GO:0060879 -OBO_REL:is_a-> GO:0060606, Assigned namespace "biological_process" to GO:0060879] * Changed name of GO:0060879 from "null" to "semicircular canal fusion" * Set definition of GO:0060879 to "Creation of the central hole of the semicircular canal by sealing the edges of the pouch that forms ruing the process of semicircular canal formation." * Added definition dbxref GOC:dph to GO:0060879 * Added definition dbxref GOC:sdb_2009 to GO:0060879 * Added definition dbxref GOC:tb to GO:0060879 * Created link GO:0060879 -part_of-> GO:0060876 * Created link GO:0060879 -OBO_REL:is_a-> GO:0060606 * Assigned namespace "biological_process" to GO:0060879 * [Changed name of GO:0060880 from "null" to "cell morphogenesis involved in semicircular canal fusion", Set definition of GO:0060880 to "The change in form (cell shape and size) that occurs when a semicircular canal epithelial cell acquires the structural features that allow it to contribute to the process of semicircular canal fusion.", Added definition dbxref GOC:dph to GO:0060880, Added definition dbxref GOC:sdb_2009 to GO:0060880, Added definition dbxref GOC:tb to GO:0060880, Created link GO:0060880 -part_of-> GO:0060879, Created link GO:0060880 -OBO_REL:is_a-> GO:0000904, Assigned namespace "biological_process" to GO:0060880] * Changed name of GO:0060880 from "null" to "cell morphogenesis involved in semicircular canal fusion" * Set definition of GO:0060880 to "The change in form (cell shape and size) that occurs when a semicircular canal epithelial cell acquires the structural features that allow it to contribute to the process of semicircular canal fusion." * Added definition dbxref GOC:dph to GO:0060880 * Added definition dbxref GOC:sdb_2009 to GO:0060880 * Added definition dbxref GOC:tb to GO:0060880 * Created link GO:0060880 -part_of-> GO:0060879 * Created link GO:0060880 -OBO_REL:is_a-> GO:0000904 * Assigned namespace "biological_process" to GO:0060880 * [Changed name of GO:0060881 from "null" to "basal lamina disassembly", Set definition of GO:0060881 to "A process that results in the breakdown of the basal lamina.", Added definition dbxref GOC:dph to GO:0060881, Added definition dbxref GOC:sdb_2009 to GO:0060881, Added definition dbxref GOC:tb to GO:0060881, Created link GO:0060881 -OBO_REL:is_a-> GO:0022617, Assigned namespace "biological_process" to GO:0060881] * Changed name of GO:0060881 from "null" to "basal lamina disassembly" * Set definition of GO:0060881 to "A process that results in the breakdown of the basal lamina." * Added definition dbxref GOC:dph to GO:0060881 * Added definition dbxref GOC:sdb_2009 to GO:0060881 * Added definition dbxref GOC:tb to GO:0060881 * Created link GO:0060881 -OBO_REL:is_a-> GO:0022617 * Assigned namespace "biological_process" to GO:0060881 * [Changed name of GO:0060882 from "null" to "basal lamina disassembly involved in semicircular canal fusion", Set definition of GO:0060882 to "A process that results in the breakdown of the basal lamina that contributes to the process of semicircular canal fusion.", Added definition dbxref GOC:dph to GO:0060882, Added definition dbxref GOC:sdb_2009 to GO:0060882, Added definition dbxref GOC:tb to GO:0060882, Created link GO:0060882 -part_of-> GO:0060876, Created link GO:0060882 -OBO_REL:is_a-> GO:0060881, Assigned namespace "biological_process" to GO:0060882] * Changed name of GO:0060882 from "null" to "basal lamina disassembly involved in semicircular canal fusion" * Set definition of GO:0060882 to "A process that results in the breakdown of the basal lamina that contributes to the process of semicircular canal fusion." * Added definition dbxref GOC:dph to GO:0060882 * Added definition dbxref GOC:sdb_2009 to GO:0060882 * Added definition dbxref GOC:tb to GO:0060882 * Created link GO:0060882 -part_of-> GO:0060876 * Created link GO:0060882 -OBO_REL:is_a-> GO:0060881 * Assigned namespace "biological_process" to GO:0060882 * [Changed name of GO:0060883 from "null" to "regulation of basal lamina disassembly involved in semicircular canal fusion by cell communication", Set definition of GO:0060883 to "Any process that mediates interactions between a cell and its surroundings that modulates of the rate, frequency or extent of basal lamina disassembly involved in semicircular canal fusion.", Added definition dbxref GOC:dph to GO:0060883, Added definition dbxref GOC:sdb_2009 to GO:0060883, Added definition dbxref GOC:tb to GO:0060883, Created link GO:0060883 -regulates-> GO:0060882, Created link GO:0060883 -OBO_REL:is_a-> GO:0007154, Created link GO:0060883 -OBO_REL:is_a-> GO:0010715, Assigned namespace "biological_process" to GO:0060883] * Changed name of GO:0060883 from "null" to "regulation of basal lamina disassembly involved in semicircular canal fusion by cell communication" * Set definition of GO:0060883 to "Any process that mediates interactions between a cell and its surroundings that modulates of the rate, frequency or extent of basal lamina disassembly involved in semicircular canal fusion." * Added definition dbxref GOC:dph to GO:0060883 * Added definition dbxref GOC:sdb_2009 to GO:0060883 * Added definition dbxref GOC:tb to GO:0060883 * Created link GO:0060883 -regulates-> GO:0060882 * Created link GO:0060883 -OBO_REL:is_a-> GO:0007154 * Created link GO:0060883 -OBO_REL:is_a-> GO:0010715 * Assigned namespace "biological_process" to GO:0060883 * [Changed name of GO:0060884 from "null" to "clearance of cells from fusion plate", Set definition of GO:0060884 to "The morphogenetic process by which cells are removed from the inner loop of a semicircular canal.", Added definition dbxref GOC:dph to GO:0060884, Added definition dbxref GOC:sdb_2009 to GO:0060884, Added definition dbxref GOC:tb to GO:0060884, Created link GO:0060884 -part_of-> GO:0048752, Created link GO:0060884 -OBO_REL:is_a-> GO:0002009, Assigned namespace "biological_process" to GO:0060884] * Changed name of GO:0060884 from "null" to "clearance of cells from fusion plate" * Set definition of GO:0060884 to "The morphogenetic process by which cells are removed from the inner loop of a semicircular canal." * Added definition dbxref GOC:dph to GO:0060884 * Added definition dbxref GOC:sdb_2009 to GO:0060884 * Added definition dbxref GOC:tb to GO:0060884 * Created link GO:0060884 -part_of-> GO:0048752 * Created link GO:0060884 -OBO_REL:is_a-> GO:0002009 * Assigned namespace "biological_process" to GO:0060884 * [Changed name of GO:0060885 from "null" to "clearance of cells from fusion plate by apoptosis", Set definition of GO:0060885 to "The process of apoptosis that contributes to the shaping of the semicircular canal by removing cells in the fusion plate, forming the loops of the canals.", Added definition dbxref GOC:dph to GO:0060885, Added definition dbxref GOC:sdb_2009 to GO:0060885, Added definition dbxref GOC:tb to GO:0060885, Created link GO:0060885 -OBO_REL:is_a-> GO:0060884, Created link GO:0060885 -OBO_REL:is_a-> GO:0060561, Assigned namespace "biological_process" to GO:0060885] * Changed name of GO:0060885 from "null" to "clearance of cells from fusion plate by apoptosis" * Set definition of GO:0060885 to "The process of apoptosis that contributes to the shaping of the semicircular canal by removing cells in the fusion plate, forming the loops of the canals." * Added definition dbxref GOC:dph to GO:0060885 * Added definition dbxref GOC:sdb_2009 to GO:0060885 * Added definition dbxref GOC:tb to GO:0060885 * Created link GO:0060885 -OBO_REL:is_a-> GO:0060884 * Created link GO:0060885 -OBO_REL:is_a-> GO:0060561 * Assigned namespace "biological_process" to GO:0060885 * [Changed name of GO:0060886 from "null" to "clearance of cells from fusion plate by epithelial to mesenchymal transition", Set definition of GO:0060886 to "The process of epithelial to mesenchymal transition that contributes to the shaping of the semicircular canal by effectively removing epithelial cells from the fusion plate, forming the loops of the canals.", Added definition dbxref GOC:dph to GO:0060886, Added definition dbxref GOC:sdb_2009 to GO:0060886, Added definition dbxref GOC:tb to GO:0060886, Created link GO:0060886 -OBO_REL:is_a-> GO:0060884, Created link GO:0060886 -OBO_REL:is_a-> GO:0001837, Assigned namespace "biological_process" to GO:0060886] * Changed name of GO:0060886 from "null" to "clearance of cells from fusion plate by epithelial to mesenchymal transition" * Set definition of GO:0060886 to "The process of epithelial to mesenchymal transition that contributes to the shaping of the semicircular canal by effectively removing epithelial cells from the fusion plate, forming the loops of the canals." * Added definition dbxref GOC:dph to GO:0060886 * Added definition dbxref GOC:sdb_2009 to GO:0060886 * Added definition dbxref GOC:tb to GO:0060886 * Created link GO:0060886 -OBO_REL:is_a-> GO:0060884 * Created link GO:0060886 -OBO_REL:is_a-> GO:0001837 * Assigned namespace "biological_process" to GO:0060886 * [Changed name of GO:0060887 from "null" to "limb epidermis development", Set definition of GO:0060887 to "The process whose specific outcome is the progression of the epidermis of the limb over time, from its formation to the mature structure. The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium.", Added definition dbxref GOC:dph to GO:0060887, Added definition dbxref GOC:sdb_2009 to GO:0060887, Added definition dbxref GOC:tb to GO:0060887, Created link GO:0060887 -part_of-> GO:0060173, Created link GO:0060887 -OBO_REL:is_a-> GO:0008544, Assigned namespace "biological_process" to GO:0060887] * Changed name of GO:0060887 from "null" to "limb epidermis development" * Set definition of GO:0060887 to "The process whose specific outcome is the progression of the epidermis of the limb over time, from its formation to the mature structure. The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." * Added definition dbxref GOC:dph to GO:0060887 * Added definition dbxref GOC:sdb_2009 to GO:0060887 * Added definition dbxref GOC:tb to GO:0060887 * Created link GO:0060887 -part_of-> GO:0060173 * Created link GO:0060887 -OBO_REL:is_a-> GO:0008544 * Assigned namespace "biological_process" to GO:0060887 * [Changed name of GO:0060888 from "null" to "limb epidermis stratification", Set definition of GO:0060888 to "The pattern specification process by which the epidermis of the limb is subdivided in space to define a volume in which specific patterns of basal cell, spinous cell and granular cells will differentiate giving rise to the layers of the limb epidermis.", Added definition dbxref GOC:dph to GO:0060888, Added definition dbxref GOC:sdb_2009 to GO:0060888, Added definition dbxref GOC:tb to GO:0060888, Created link GO:0060888 -OBO_REL:is_a-> GO:0003002, Created link GO:0060888 -OBO_REL:is_a-> GO:0060887, Assigned namespace "biological_process" to GO:0060888] * Changed name of GO:0060888 from "null" to "limb epidermis stratification" * Set definition of GO:0060888 to "The pattern specification process by which the epidermis of the limb is subdivided in space to define a volume in which specific patterns of basal cell, spinous cell and granular cells will differentiate giving rise to the layers of the limb epidermis." * Added definition dbxref GOC:dph to GO:0060888 * Added definition dbxref GOC:sdb_2009 to GO:0060888 * Added definition dbxref GOC:tb to GO:0060888 * Created link GO:0060888 -OBO_REL:is_a-> GO:0003002 * Created link GO:0060888 -OBO_REL:is_a-> GO:0060887 * Assigned namespace "biological_process" to GO:0060888 * [Changed name of GO:0060889 from "null" to "limb basal epidermal cell differentiation", Set definition of GO:0060889 to "The process whereby a relatively unspecialized cell acquires specialized features of a limb epidermal basal cell. A epidermal basal cell cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into more specialized cell of the limb epidermis.", Added definition dbxref GOC:dph to GO:0060889, Added definition dbxref GOC:sdb_2009 to GO:0060889, Added definition dbxref GOC:tb to GO:0060889, Created link GO:0060889 -OBO_REL:is_a-> GO:0048863, Created link GO:0060889 -OBO_REL:is_a-> GO:0009913, Created link GO:0060889 -part_of-> GO:0060887, Assigned namespace "biological_process" to GO:0060889] * Changed name of GO:0060889 from "null" to "limb basal epidermal cell differentiation" * Set definition of GO:0060889 to "The process whereby a relatively unspecialized cell acquires specialized features of a limb epidermal basal cell. A epidermal basal cell cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into more specialized cell of the limb epidermis." * Added definition dbxref GOC:dph to GO:0060889 * Added definition dbxref GOC:sdb_2009 to GO:0060889 * Added definition dbxref GOC:tb to GO:0060889 * Created link GO:0060889 -OBO_REL:is_a-> GO:0048863 * Created link GO:0060889 -OBO_REL:is_a-> GO:0009913 * Created link GO:0060889 -part_of-> GO:0060887 * Assigned namespace "biological_process" to GO:0060889 * [Changed name of GO:0060890 from "null" to "limb spinous cell differentiation", Set definition of GO:0060890 to "The process whereby a relatively unspecialized cell acquires specialized features of a limb epidermal spinous cell.", Added definition dbxref GOC:dph to GO:0060890, Added definition dbxref GOC:sdb_2009 to GO:0060890, Added definition dbxref GOC:tb to GO:0060890, Created link GO:0060890 -part_of-> GO:0060887, Created link GO:0060890 -OBO_REL:is_a-> GO:0030216, Assigned namespace "biological_process" to GO:0060890] * Changed name of GO:0060890 from "null" to "limb spinous cell differentiation" * Set definition of GO:0060890 to "The process whereby a relatively unspecialized cell acquires specialized features of a limb epidermal spinous cell." * Added definition dbxref GOC:dph to GO:0060890 * Added definition dbxref GOC:sdb_2009 to GO:0060890 * Added definition dbxref GOC:tb to GO:0060890 * Created link GO:0060890 -part_of-> GO:0060887 * Created link GO:0060890 -OBO_REL:is_a-> GO:0030216 * Assigned namespace "biological_process" to GO:0060890 * [Changed name of GO:0060891 from "null" to "limb granular cell differentiation", Set definition of GO:0060891 to "The process whereby a relatively unspecialized cell acquires specialized features of a limb epidermal granular cell.", Added definition dbxref GOC:dph to GO:0060891, Added definition dbxref GOC:sdb_2009 to GO:0060891, Added definition dbxref GOC:tb to GO:0060891, Created link GO:0060891 -part_of-> GO:0060887, Created link GO:0060891 -OBO_REL:is_a-> GO:0030216, Assigned namespace "biological_process" to GO:0060891] * Changed name of GO:0060891 from "null" to "limb granular cell differentiation" * Set definition of GO:0060891 to "The process whereby a relatively unspecialized cell acquires specialized features of a limb epidermal granular cell." * Added definition dbxref GOC:dph to GO:0060891 * Added definition dbxref GOC:sdb_2009 to GO:0060891 * Added definition dbxref GOC:tb to GO:0060891 * Created link GO:0060891 -part_of-> GO:0060887 * Created link GO:0060891 -OBO_REL:is_a-> GO:0030216 * Assigned namespace "biological_process" to GO:0060891 * [Changed name of GO:0060892 from "null" to "limb basal epidermal cell fate specification", Set definition of GO:0060892 to "The process by which a cell becomes capable of differentiating autonomously into an limb basal epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.", Added definition dbxref GOC:dph to GO:0060892, Added definition dbxref GOC:sdb_2009 to GO:0060892, Added definition dbxref GOC:tb to GO:0060892, Created link GO:0060892 -part_of-> GO:0060889, Created link GO:0060892 -part_of-> GO:0060888, Created link GO:0060892 -OBO_REL:is_a-> GO:0009957, Assigned namespace "biological_process" to GO:0060892] * Changed name of GO:0060892 from "null" to "limb basal epidermal cell fate specification" * Set definition of GO:0060892 to "The process by which a cell becomes capable of differentiating autonomously into an limb basal epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed." * Added definition dbxref GOC:dph to GO:0060892 * Added definition dbxref GOC:sdb_2009 to GO:0060892 * Added definition dbxref GOC:tb to GO:0060892 * Created link GO:0060892 -part_of-> GO:0060889 * Created link GO:0060892 -part_of-> GO:0060888 * Created link GO:0060892 -OBO_REL:is_a-> GO:0009957 * Assigned namespace "biological_process" to GO:0060892 * [Changed name of GO:0060893 from "null" to "limb granular cell fate specification", Set definition of GO:0060893 to "The process by which a cell becomes capable of differentiating autonomously into an limb granular cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.", Added definition dbxref GOC:dph to GO:0060893, Added definition dbxref GOC:sdb_2009 to GO:0060893, Added definition dbxref GOC:tb to GO:0060893, Created link GO:0060893 -part_of-> GO:0060888, Created link GO:0060893 -part_of-> GO:0060891, Created link GO:0060893 -OBO_REL:is_a-> GO:0009957, Assigned namespace "biological_process" to GO:0060893] * Changed name of GO:0060893 from "null" to "limb granular cell fate specification" * Set definition of GO:0060893 to "The process by which a cell becomes capable of differentiating autonomously into an limb granular cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed." * Added definition dbxref GOC:dph to GO:0060893 * Added definition dbxref GOC:sdb_2009 to GO:0060893 * Added definition dbxref GOC:tb to GO:0060893 * Created link GO:0060893 -part_of-> GO:0060888 * Created link GO:0060893 -part_of-> GO:0060891 * Created link GO:0060893 -OBO_REL:is_a-> GO:0009957 * Assigned namespace "biological_process" to GO:0060893 * [Changed name of GO:0060894 from "null" to "limb spinous cell fate specification", Set definition of GO:0060894 to "The process by which a cell becomes capable of differentiating autonomously into a limb spinous cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.", Added definition dbxref GOC:dph to GO:0060894, Added definition dbxref GOC:sdb_2009 to GO:0060894, Added definition dbxref GOC:tb to GO:0060894, Created link GO:0060894 -OBO_REL:is_a-> GO:0009957, Created link GO:0060894 -part_of-> GO:0060888, Created link GO:0060894 -part_of-> GO:0060890, Assigned namespace "biological_process" to GO:0060894] * Changed name of GO:0060894 from "null" to "limb spinous cell fate specification" * Set definition of GO:0060894 to "The process by which a cell becomes capable of differentiating autonomously into a limb spinous cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed." * Added definition dbxref GOC:dph to GO:0060894 * Added definition dbxref GOC:sdb_2009 to GO:0060894 * Added definition dbxref GOC:tb to GO:0060894 * Created link GO:0060894 -OBO_REL:is_a-> GO:0009957 * Created link GO:0060894 -part_of-> GO:0060888 * Created link GO:0060894 -part_of-> GO:0060890 * Assigned namespace "biological_process" to GO:0060894 * [Changed name of GO:0060895 from "null" to "retinoic acid receptor signaling pathway involved in spinal cord dorsal/ventral patterning", Set definition of GO:0060895 to "The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to the dorsal ventral patterning of the spinal cord.", Added definition dbxref GOC:dph to GO:0060895, Added definition dbxref GOC:sdb_2009 to GO:0060895, Added definition dbxref GOC:tb to GO:0060895, Created link GO:0060895 -part_of-> GO:0021513, Created link GO:0060895 -OBO_REL:is_a-> GO:0048384, Assigned namespace "biological_process" to GO:0060895] * Changed name of GO:0060895 from "null" to "retinoic acid receptor signaling pathway involved in spinal cord dorsal/ventral patterning" * Set definition of GO:0060895 to "The series of molecular signals generated as a consequence of a retinoic acid receptor binding to one of its physiological ligands that contributes to the dorsal ventral patterning of the spinal cord." * Added definition dbxref GOC:dph to GO:0060895 * Added definition dbxref GOC:sdb_2009 to GO:0060895 * Added definition dbxref GOC:tb to GO:0060895 * Created link GO:0060895 -part_of-> GO:0021513 * Created link GO:0060895 -OBO_REL:is_a-> GO:0048384 * Assigned namespace "biological_process" to GO:0060895 * [Changed name of GO:0060896 from "null" to "neural plate pattern specification", Set definition of GO:0060896 to "The developmental process that results in the creation of defined areas or spaces within the neural plate to which cells respond and eventually are instructed to differentiate.", Added definition dbxref GOC:dph to GO:0060896, Added definition dbxref GOC:sdb_2009 to GO:0060896, Added definition dbxref GOC:tb to GO:0060896, Created link GO:0060896 -OBO_REL:is_a-> GO:0007389, Assigned namespace "biological_process" to GO:0060896] * Changed name of GO:0060896 from "null" to "neural plate pattern specification" * Set definition of GO:0060896 to "The developmental process that results in the creation of defined areas or spaces within the neural plate to which cells respond and eventually are instructed to differentiate." * Added definition dbxref GOC:dph to GO:0060896 * Added definition dbxref GOC:sdb_2009 to GO:0060896 * Added definition dbxref GOC:tb to GO:0060896 * Created link GO:0060896 -OBO_REL:is_a-> GO:0007389 * Assigned namespace "biological_process" to GO:0060896 * [Changed name of GO:0060897 from "null" to "neural plate regionalization", Set definition of GO:0060897 to "The pattern specification process by which an axis or axes of the neural plate is subdivided in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.", Added definition dbxref GOC:dph to GO:0060897, Added definition dbxref GOC:sdb_2009 to GO:0060897, Added definition dbxref GOC:tb to GO:0060897, Created link GO:0060897 -OBO_REL:is_a-> GO:0003002, Created link GO:0060897 -part_of-> GO:0060896, Assigned namespace "biological_process" to GO:0060897] * Changed name of GO:0060897 from "null" to "neural plate regionalization" * Set definition of GO:0060897 to "The pattern specification process by which an axis or axes of the neural plate is subdivided in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment." * Added definition dbxref GOC:dph to GO:0060897 * Added definition dbxref GOC:sdb_2009 to GO:0060897 * Added definition dbxref GOC:tb to GO:0060897 * Created link GO:0060897 -OBO_REL:is_a-> GO:0003002 * Created link GO:0060897 -part_of-> GO:0060896 * Assigned namespace "biological_process" to GO:0060897 * [Changed name of GO:0060898 from "null" to "camera-type eye field cell fate commitment", Set definition of GO:0060898 to "The commitment of neurectodermal cells to cells of the eye field and their capacity to differentiate into eye field cells. Eye field cells are neurectodermal cells that will form the optic placode.", Added definition dbxref GOC:dph to GO:0060898, Added definition dbxref GOC:sdb_2009 to GO:0060898, Added definition dbxref GOC:tb to GO:0060898, Created link GO:0060898 -part_of-> GO:0046619, Created link GO:0060898 -part_of-> GO:0060897, Created link GO:0060898 -OBO_REL:is_a-> GO:0045165, Assigned namespace "biological_process" to GO:0060898] * Changed name of GO:0060898 from "null" to "camera-type eye field cell fate commitment" * Set definition of GO:0060898 to "The commitment of neurectodermal cells to cells of the eye field and their capacity to differentiate into eye field cells. Eye field cells are neurectodermal cells that will form the optic placode." * Added definition dbxref GOC:dph to GO:0060898 * Added definition dbxref GOC:sdb_2009 to GO:0060898 * Added definition dbxref GOC:tb to GO:0060898 * Created link GO:0060898 -part_of-> GO:0046619 * Created link GO:0060898 -part_of-> GO:0060897 * Created link GO:0060898 -OBO_REL:is_a-> GO:0045165 * Assigned namespace "biological_process" to GO:0060898 * [Changed name of GO:0060899 from "null" to "regulation of transcription involved in camera-type eye field cell fate commitment", Set definition of GO:0060899 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a neurectodermal cell to a specialized neurectodermal cell that will give rise to the optic vesicle.", Added definition dbxref GOC:dph to GO:0060899, Added definition dbxref GOC:sdb_2009 to GO:0060899, Added definition dbxref GOC:tb to GO:0060899, Created link GO:0060899 -OBO_REL:is_a-> GO:0060850, Created link GO:0060899 -part_of-> GO:0060898, Assigned namespace "biological_process" to GO:0060899] * Changed name of GO:0060899 from "null" to "regulation of transcription involved in camera-type eye field cell fate commitment" * Set definition of GO:0060899 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a neurectodermal cell to a specialized neurectodermal cell that will give rise to the optic vesicle." * Added definition dbxref GOC:dph to GO:0060899 * Added definition dbxref GOC:sdb_2009 to GO:0060899 * Added definition dbxref GOC:tb to GO:0060899 * Created link GO:0060899 -OBO_REL:is_a-> GO:0060850 * Created link GO:0060899 -part_of-> GO:0060898 * Assigned namespace "biological_process" to GO:0060899 * [Changed name of GO:0060900 from "null" to "embryonic camera-type eye formation", Set definition of GO:0060900 to "The developmental process pertaining to the initial formation of a camera-type eye from unspecified neurectoderm. This process begins with the differentiation of cells that form the optic field and ends when the optic cup has attained its shape.", Added definition dbxref GOC:dph to GO:0060900, Added definition dbxref GOC:sdb_2009 to GO:0060900, Added definition dbxref GOC:tb to GO:0060900, Created link GO:0060900 -OBO_REL:is_a-> GO:0048646, Created link GO:0060900 -part_of-> GO:0048596, Assigned namespace "biological_process" to GO:0060900] * Changed name of GO:0060900 from "null" to "embryonic camera-type eye formation" * Set definition of GO:0060900 to "The developmental process pertaining to the initial formation of a camera-type eye from unspecified neurectoderm. This process begins with the differentiation of cells that form the optic field and ends when the optic cup has attained its shape." * Added definition dbxref GOC:dph to GO:0060900 * Added definition dbxref GOC:sdb_2009 to GO:0060900 * Added definition dbxref GOC:tb to GO:0060900 * Created link GO:0060900 -OBO_REL:is_a-> GO:0048646 * Created link GO:0060900 -part_of-> GO:0048596 * Assigned namespace "biological_process" to GO:0060900 * [Changed name of GO:0060901 from "null" to "regulation of hair cycle by Wnt receptor signaling pathway through beta-catenin", Set definition of GO:0060901 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes that modulates the rate, frequency or extent of the hair cycle.", Added definition dbxref GOC:dph to GO:0060901, Added definition dbxref GOC:sdb_2009 to GO:0060901, Added definition dbxref GOC:tb to GO:0060901, Created link GO:0060901 -OBO_REL:is_a-> GO:0042634, Created link GO:0060901 -OBO_REL:is_a-> GO:0060070, Assigned namespace "biological_process" to GO:0060901] * Changed name of GO:0060901 from "null" to "regulation of hair cycle by Wnt receptor signaling pathway through beta-catenin" * Set definition of GO:0060901 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes that modulates the rate, frequency or extent of the hair cycle." * Added definition dbxref GOC:dph to GO:0060901 * Added definition dbxref GOC:sdb_2009 to GO:0060901 * Added definition dbxref GOC:tb to GO:0060901 * Created link GO:0060901 -OBO_REL:is_a-> GO:0042634 * Created link GO:0060901 -OBO_REL:is_a-> GO:0060070 * Assigned namespace "biological_process" to GO:0060901 * [Changed name of GO:0060902 from "null" to "regulation of hair cycle by BMP signaling pathway", Set definition of GO:0060902 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that modulates the rate, frequency or extent of the hair cycle.", Added definition dbxref GOC:dph to GO:0060902, Added definition dbxref GOC:sdb_2009 to GO:0060902, Added definition dbxref GOC:tb to GO:0060902, Created link GO:0060902 -OBO_REL:is_a-> GO:0030509, Created link GO:0060902 -OBO_REL:is_a-> GO:0042634, Assigned namespace "biological_process" to GO:0060902] * Changed name of GO:0060902 from "null" to "regulation of hair cycle by BMP signaling pathway" * Set definition of GO:0060902 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that modulates the rate, frequency or extent of the hair cycle." * Added definition dbxref GOC:dph to GO:0060902 * Added definition dbxref GOC:sdb_2009 to GO:0060902 * Added definition dbxref GOC:tb to GO:0060902 * Created link GO:0060902 -OBO_REL:is_a-> GO:0030509 * Created link GO:0060902 -OBO_REL:is_a-> GO:0042634 * Assigned namespace "biological_process" to GO:0060902 * [Changed name of GO:0070853 from "null" to "myosin VI binding", Set definition of GO:0070853 to "Interacting selectively and non-covalently with a class VI myosin. The myosin VI heavy chain has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain, a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments.", Added definition dbxref GOC:mah to GO:0070853, Added definition dbxref http://www.mrc-lmb.cam.ac.uk/myosin/Review/Reviewframeset.html to GO:0070853, Added definition dbxref PMID:15473855 to GO:0070853, Created link GO:0070853 -OBO_REL:is_a-> GO:0017022, Assigned namespace "molecular_function" to GO:0070853] * Changed name of GO:0070853 from "null" to "myosin VI binding" * Set definition of GO:0070853 to "Interacting selectively and non-covalently with a class VI myosin. The myosin VI heavy chain has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain, a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments." * Added definition dbxref GOC:mah to GO:0070853 * Added definition dbxref http://www.mrc-lmb.cam.ac.uk/myosin/Review/Reviewframeset.html to GO:0070853 * Added definition dbxref PMID:15473855 to GO:0070853 * Created link GO:0070853 -OBO_REL:is_a-> GO:0017022 * Assigned namespace "molecular_function" to GO:0070853 * [Changed name of GO:0070854 from "null" to "myosin VI heavy chain binding", Set definition of GO:0070854 to "Interacting selectively and non-covalently with a heavy chain of a myosin VI complex.", Added definition dbxref GOC:sart to GO:0070854, Created link GO:0070854 -OBO_REL:is_a-> GO:0070853, Created link GO:0070854 -OBO_REL:is_a-> GO:0032036, Assigned namespace "molecular_function" to GO:0070854] * Changed name of GO:0070854 from "null" to "myosin VI heavy chain binding" * Set definition of GO:0070854 to "Interacting selectively and non-covalently with a heavy chain of a myosin VI complex." * Added definition dbxref GOC:sart to GO:0070854 * Created link GO:0070854 -OBO_REL:is_a-> GO:0070853 * Created link GO:0070854 -OBO_REL:is_a-> GO:0032036 * Assigned namespace "molecular_function" to GO:0070854 * [Changed name of GO:0070855 from "null" to "myosin VI head/neck binding", Set definition of GO:0070855 to "Interacting selectively and non-covalently with the head/neck region of a myosin VI heavy chain.", Added definition dbxref GOC:sart to GO:0070855, Created link GO:0070855 -OBO_REL:is_a-> GO:0032028, Created link GO:0070855 -OBO_REL:is_a-> GO:0070854, Assigned namespace "molecular_function" to GO:0070855] * Changed name of GO:0070855 from "null" to "myosin VI head/neck binding" * Set definition of GO:0070855 to "Interacting selectively and non-covalently with the head/neck region of a myosin VI heavy chain." * Added definition dbxref GOC:sart to GO:0070855 * Created link GO:0070855 -OBO_REL:is_a-> GO:0032028 * Created link GO:0070855 -OBO_REL:is_a-> GO:0070854 * Assigned namespace "molecular_function" to GO:0070855 * [Changed name of GO:0070856 from "null" to "myosin VI light chain binding", Set definition of GO:0070856 to "Interacting selectively and non-covalently with a light chain of a myosin VI complex.", Added definition dbxref GOC:sart to GO:0070856, Created link GO:0070856 -OBO_REL:is_a-> GO:0032027, Created link GO:0070856 -OBO_REL:is_a-> GO:0070853, Assigned namespace "molecular_function" to GO:0070856] * Changed name of GO:0070856 from "null" to "myosin VI light chain binding" * Set definition of GO:0070856 to "Interacting selectively and non-covalently with a light chain of a myosin VI complex." * Added definition dbxref GOC:sart to GO:0070856 * Created link GO:0070856 -OBO_REL:is_a-> GO:0032027 * Created link GO:0070856 -OBO_REL:is_a-> GO:0070853 * Assigned namespace "molecular_function" to GO:0070856 * Changed definition of GO:0001751 from "The process whereby a relatively unspecialized cell acquires the specialized features of an eye photoreceptor cell. An example of this is found in Drosophila melanogaster." to "The process whereby a relatively unspecialized cell acquires the specialized features of an eye photoreceptor cell." * Changed definition of GO:0001752 from "The process whereby the developmental fate of a cell becomes restricted such that it will develop into a compound eye photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments. An example of compound eye photoreceptor fate commitment is found in Drosophila melanogaster." to "The process whereby the developmental fate of a cell becomes restricted such that it will develop into a compound eye photoreceptor cell. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments." * Added definition dbxref GOC:sdb_2009 to GO:0002072 * Added definition dbxref GOC:tb to GO:0002072 * Deleted GO:0002072 --part_of--> GO:0048593 * Created link GO:0002072 -part_of-> GO:0060900 * Changed definition of GO:0006448 from "Any process that modulates the frequency, rate or extent of translational elongation." to "Any process that modulates the frequency, rate, extent or accuracy of translational elongation." * Deleted GO:0006450 --OBO_REL:is_a--> GO:0006417 * Created link GO:0006450 -regulates-> GO:0006414 * Created link GO:0006450 -OBO_REL:is_a-> GO:0006448 * Changed definition of GO:0007458 from "The morphogenetic furrow is a dorsoventral indentation which sweeps anteriorly across the eye disc. Ommatidia begin to form along the furrow, resulting in a graded series of ommatidial development across the anterior/posterior axis of the disc. An example of this is found in Drosophila melanogaster." to "The morphogenetic furrow is a dorsoventral indentation which sweeps anteriorly across the eye disc. Ommatidia begin to form along the furrow, resulting in a graded series of ommatidial development across the anterior/posterior axis of the disc." * Changed definition of GO:0008540 from "The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex. An example of this is found in Mus musculus." to "The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex." * Changed definition of GO:0008541 from "The subcomplex of the proteasome regulatory particle that forms the peripheral lid, which is added on top of the base subcomplex. An example of this is found in Mus musculus." to "The subcomplex of the proteasome regulatory particle that forms the peripheral lid, which is added on top of the base subcomplex." * Changed name of GO:0009288 from "flagellin-based flagellum" to "bacterial-type flagellum" * Added synonym "flagellin-based flagellum" to GO:0009288 * Changed synonym scope of GO:0009288 from "Related" to "Exact" * Changed definition of GO:0009843 from "A thylakoid found in a cyanelle, a type of plastid found in certain algae; contains a photosynthetic membrane resembling that of cyanobacteria." to "A thylakoid found in a cyanelle, which is a type of plastid found in certain algae. The cyanelle contains a photosynthetic membrane resembling that of cyanobacteria." * Added definition dbxref GOC:dph to GO:0009913 * Added definition dbxref GOC:sdb_2009 to GO:0009913 * Added definition dbxref GOC:tb to GO:0009913 * Deleted GO:0009913 --part_of--> GO:0048730 * Created link GO:0009913 -part_of-> GO:0008544 * Created link GO:0010957 -OBO_REL:is_a-> GO:0010894 * Deleted GO:0015994 --OBO_REL:is_a--> GO:0042440 * Changed definition of GO:0016330 from "A discrete cell cycle that occurs during the third instar eye imaginal disc after progression of the morphogenetic furrow. It is essential for generation of a sufficient pool of uncommitted cells to develop complete ommatidia. An example of this is found in Drosophila melanogaster." to "A discrete cell cycle that occurs during the third instar eye imaginal disc after progression of the morphogenetic furrow. It is essential for generation of a sufficient pool of uncommitted cells to develop complete ommatidia." * Changed name of GO:0019294 from "ketodeoxyoctanoate biosynthetic process" to "keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" * Changed definition of GO:0019294 from "The chemical reactions and pathways resulting in the formation of ketodeoxyoctanoate, 2-keto-3-deoxy-D-octaonate, an acid present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria." to "The chemical reactions and pathways resulting in the formation of keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria." * Added definition dbxref ChEBI:32817 to GO:0019294 * Deleted synonym "3-deoxy-D-manno-octulosonic acid biosynthetic process" from GO:0019294 * Deleted synonym "ketodeoxyoctanoate anabolism" from GO:0019294 * Deleted synonym "ketodeoxyoctanoate biosynthesis" from GO:0019294 * Deleted synonym "ketodeoxyoctanoate formation" from GO:0019294 * Deleted synonym "ketodeoxyoctanoate synthesis" from GO:0019294 * Added synonym "keto-3-deoxy-D-manno-octulosonic acid anabolism" to GO:0019294 * Changed synonym scope of GO:0019294 from "Related" to "Exact" * Added synonym "keto-3-deoxy-D-manno-octulosonic acid biosynthesis" to GO:0019294 * Changed synonym scope of GO:0019294 from "Related" to "Exact" * Added synonym "keto-3-deoxy-D-manno-octulosonic acid formation" to GO:0019294 * Changed synonym scope of GO:0019294 from "Related" to "Exact" * Added synonym "keto-3-deoxy-D-manno-octulosonic acid synthesis" to GO:0019294 * Changed synonym scope of GO:0019294 from "Related" to "Exact" * Added synonym "ketodeoxyoctanoate biosynthetic process" to GO:0019294 * Added general dbxref ISBN:0198506732 to synonym ketodeoxyoctanoate biosynthetic process of GO:0019294 * Added definition dbxref GOC:sdb_2009 to GO:0021774 * Added definition dbxref GOC:tb to GO:0021774 * Deleted GO:0021774 --OBO_REL:is_a--> GO:0048384 * Created link GO:0021774 -OBO_REL:is_a-> GO:0060895 * Changed name of GO:0021997 from "neural plate pattern formation" to "neural plate axis specification" * Created link GO:0021997 -part_of-> GO:0060896 * Deleted synonym "photosystem II (sensu Viridiplantae)" from GO:0030095 * Deleted synonym "photosystem II (sensu Cyanobacteria)" from GO:0030096 * Deleted synonym "pheromone catabolic process (sensu Saccharomyces)" from GO:0030163 * Deleted synonym "pheromone catabolism (sensu Saccharomyces)" from GO:0030163 * Added synonym "pheromone catabolic process" to GO:0030163 * Added synonym "pheromone catabolism" to GO:0030163 * Added definition dbxref GOC:dph to GO:0030216 * Added definition dbxref GOC:sdb_2009 to GO:0030216 * Added definition dbxref GOC:tb to GO:0030216 * Deleted GO:0030216 --OBO_REL:is_a--> GO:0030154 * Created link GO:0030216 -OBO_REL:is_a-> GO:0009913 * Changed definition of GO:0030287 from "The region between the plasma membrane and the cell wall as found in organisms such as yeast and Gram positive bacteria. These periplasmic spaces are quite thin." to "The region between the plasma membrane and the cell wall, as found in organisms such as yeast and Gram positive bacteria. The region is thinner than the equivalent in Gram negative bacteria." * Deleted synonym "periplasmic space (sensu Fungi)" from GO:0030287 * Deleted synonym "periplasmic space (sensu Gram-negative Bacteria)" from GO:0030288 * Deleted synonym "periplasmic space (sensu Proteobacteria)" from GO:0030288 * Deleted synonym "eggshell pattern formation (sensu Insecta)" from GO:0030381 * Deleted synonym "site of polarized growth (sensu Fungi)" from GO:0030427 * Deleted synonym "site of polarized growth (sensu Saccharomyces)" from GO:0030427 * Changed definition of GO:0030436 from "The formation of spores derived from the products of mitosis." to "The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species." * Deleted synonym "spore formation (sensu Bacteria)" from GO:0030436 * Deleted synonym "sporulation (sensu Bacteria)" from GO:0030436 * Changed definition of GO:0030437 from "The process by which a diploid cell undergoes meiosis, and the meiotic products acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota)." to "The process whereby cells that are products of meiosis acquire the specialized features of ascospores. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota)." * Deleted synonym "spore formation (sensu Fungi)" from GO:0030437 * Deleted synonym "sporulation (sensu Fungi)" from GO:0030437 * Deleted synonym "sporulation (sensu Saccharomyces)" from GO:0030437 * Added synonym "spore formation" to GO:0030437 * Changed synonym scope of GO:0030437 from "Related" to "Broad" * Added synonym "sporulation" to GO:0030437 * Changed synonym scope of GO:0030437 from "Related" to "Broad" * Changed definition of GO:0030466 from "Repression of transcription at silent mating-type loci by altering the structure of chromatin." to "Repression of transcription at silent mating-type loci by alteration of the structure of chromatin." * Deleted synonym "aging-dependent sterility (sensu Fungi)" from GO:0030466 * Deleted synonym "aging-dependent sterility (sensu Saccharomyces)" from GO:0030466 * Deleted synonym "chromatin silencing at HML and HMR (sensu Saccharomyces)" from GO:0030466 * Deleted synonym "chromatin silencing at silent mating-type cassette (sensu Fungi)" from GO:0030466 * Added synonym "aging-dependent sterility" to GO:0030466 * Changed synonym scope of GO:0030466 from "Related" to "Narrow" * Added synonym "chromatin silencing at HML and HMR" to GO:0030466 * Changed synonym scope of GO:0030466 from "Related" to "Narrow" * Changed definition of GO:0030472 from "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle in the nucleus during a mitotic cell cycle, as seen in Fungi." to "A process resulting in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle in the nucleus. The process occurs during a mitotic cell cycle and takes place at the cellular level." * Deleted synonym "mitotic spindle assembly (sensu Fungi)" from GO:0030472 * Deleted synonym "mitotic spindle assembly (sensu Saccharomyces)" from GO:0030472 * Added synonym "mitotic spindle assembly" to GO:0030472 * Changed synonym scope of GO:0030472 from "Related" to "Broad" * Deleted synonym "nuclear migration (sensu Fungi)" from GO:0030473 * Deleted synonym "nuclear migration (sensu Saccharomyces)" from GO:0030473 * Deleted synonym "nucleus migration (sensu Fungi)" from GO:0030473 * Deleted synonym "nucleus migration (sensu Saccharomyces)" from GO:0030473 * Added synonym "nucleus migration" to GO:0030473 * Changed synonym scope of GO:0030473 from "Related" to "Broad" * Deleted synonym "spindle pole body duplication (sensu Fungi)" from GO:0030474 * Changed definition of GO:0030476 from "The process by which the ascospore nucleus becomes surrounded by a specialized spore wall. Occurs by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane." to "The process by which the ascospore nucleus becomes surrounded by a specialized spore wall. Occurs by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane. An example of this process is found in Saccharomyces cerevisiae." * Deleted synonym "spore wall assembly (sensu Fungi)" from GO:0030476 * Deleted synonym "spore wall assembly (sensu Saccharomyces)" from GO:0030476 * Added synonym "spore wall assembly" to GO:0030476 * Changed synonym scope of GO:0030476 from "Related" to "Broad" * Deleted synonym "larval feeding behavior (sensu Insecta)" from GO:0030536 * Deleted synonym "larval behavior (sensu Drosophila)" from GO:0030537 * Deleted synonym "larval behavior (sensu Insecta)" from GO:0030537 * Deleted synonym "plasmid partitioning (sensu Bacteria)" from GO:0030541 * Deleted synonym "fruiting body development (sensu Bacteria)" from GO:0030583 * Deleted synonym "fruiting body formation (sensu Bacteria)" from GO:0030583 * Changed definition of GO:0030584 from "The process whose specific outcome is the progression of a sporocarp over time, from its formation to the mature structure. The sporocarp is a spore bearing fruiting body organ." to "The process whose specific outcome is the progression of a sporocarp over time, from its formation to the mature structure. The sporocarp is a spore bearing fruiting body organ. An example of this process is found in the Fungal species Coprinopsis cinerea." * Deleted synonym "fruiting body development (sensu Fungi)" from GO:0030584 * Deleted synonym "fruiting body formation (sensu Fungi)" from GO:0030584 * Added synonym "fruiting body development" to GO:0030584 * Changed synonym scope of GO:0030584 from "Related" to "Broad" * Changed definition of GO:0030587 from "The process whose specific outcome is the progression of the sorocarp over time, from its formation to the mature structure. The process begins with the aggregation of individual cells and ends with the mature sorocarp. The sorocarp is a structure containing a spore-bearing sorus that sits on top of a stalk." to "The process whose specific outcome is the progression of the sorocarp over time, from its formation to the mature structure. The process begins with the aggregation of individual cells and ends with the mature sorocarp. The sorocarp is a structure containing a spore-bearing sorus that sits on top of a stalk. An example of this process is found in Dictyostelium discoideum." * Deleted synonym "fruiting body development (sensu Dictyosteliida)" from GO:0030587 * Deleted synonym "fruiting body formation (sensu Dictyosteliida)" from GO:0030587 * Added synonym "fruiting body development" to GO:0030587 * Changed synonym scope of GO:0030587 from "Related" to "Broad" * Added synonym "fruiting body formation" to GO:0030587 * Changed synonym scope of GO:0030587 from "Related" to "Broad" * Changed definition of GO:0030589 from "Formation of furrows in the cytoplasm between nuclei during cell cycles in embryos in the syncytial blastoderm stage." to "Formation of furrows in the cytoplasm between nuclei during cell cycles in embryos in the syncytial blastoderm stage. An example of this process is found in Drosophila melanogaster." * Deleted synonym "pseudocleavage (sensu Insecta)" from GO:0030589 * Changed definition of GO:0030590 from "A process that occurs during the first cell cycle in an embryo, in which anterior cortical contractions culminate in a single partial constriction of the embryo called the pseudocleavage furrow." to "A process that occurs during the first cell cycle in an embryo, in which anterior cortical contractions culminate in a single partial constriction of the embryo called the pseudocleavage furrow. An example of this process is found in nematode worms." * Deleted synonym "pseudocleavage (sensu Nematoda)" from GO:0030590 * Deleted synonym "dense granule membrane (sensu Apicomplexa)" from GO:0030668 * Changed definition of GO:0030680 from "A ribonuclease P complex that contains a single RNA molecule that is necessary and usually sufficient for catalysis, and a single protein molecule." to "A ribonuclease P complex that contains a single RNA molecule that is necessary and usually sufficient for catalysis, and a single protein molecule. Examples of this complex are found in Bacterial species." * Deleted synonym "ribonuclease P complex (sensu Bacteria)" from GO:0030680 * Deleted synonym "RNase P complex (sensu Bacteria)" from GO:0030680 * Changed definition of GO:0030681 from "A ribonuclease P complex that generally contains a single RNA molecule and several protein molecules." to "A ribonuclease P complex that generally contains a single RNA molecule and several protein molecules. Examples of this complex are found in Archaeal species." * Deleted synonym "ribonuclease P complex (sensu Archaea" from GO:0030681 * Deleted synonym "RNase P complex (sensu Archaea)" from GO:0030681 * Changed name of GO:0030694 from "flagellin-based flagellum basal body, rod" to "bacterial-type flagellum basal body, rod" * Changed definition of GO:0030694 from "The central portion of the flagellar basal body, which spans the periplasm and threads through the rings." to "The central portion of the flagellar basal body, which spans the periplasm and threads through the rings. Examples of this component are found in Bacterial species." * Deleted synonym "flagellar basal body, rod (sensu Bacteria)" from GO:0030694 * Added synonym "flagellin-based flagellum basal body, rod" to GO:0030694 * Changed synonym scope of GO:0030694 from "Related" to "Exact" * Changed definition of GO:0030706 from "The process whereby one relatively unspecialized immature cystocyte of the germ-line cyst in the germarium acquires the specialized features of an oocyte." to "The process whereby one relatively unspecialized immature cystocyte of the germ-line cyst in the germarium acquires the specialized features of an oocyte. An example of this process can be found in Drosophila melanogaster." * Deleted synonym "oocyte cell differentiation (sensu Insecta)" from GO:0030706 * Deleted synonym "oocyte differentiation (sensu Insecta)" from GO:0030706 * Added synonym "oocyte cell differentiation" to GO:0030706 * Changed definition of GO:0030707 from "The process that occurs during oogenesis involving the ovarian follicle cells, somatic cells which surround the germ cells of an ovary." to "The process that occurs during oogenesis involving the ovarian follicle cells, somatic cells which surround the germ cells of an ovary. An example of this is found in Drosophila melanogaster." * Deleted synonym "ovarian follicle cell development (sensu Insecta)" from GO:0030707 * Changed definition of GO:0030708 from "Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the germarium." to "Formation of a single follicular epithelium around the germ-line derived cells of a cyst formed in the germarium. An example of this process is found in Drosophila melanogaster." * Deleted synonym "female germ-line cyst encapsulation (sensu Insecta)" from GO:0030708 * Changed definition of GO:0030713 from "Development of ovarian follicle cells to create the interfollicular stalks that connect the egg chambers of progressive developmental stages." to "Development of ovarian follicle cells to create the interfollicular stalks that connect the egg chambers of progressive developmental stages. An example of this process is found in Drosohila melanogaster." * Deleted synonym "stalk formation (sensu Insecta)" from GO:0030713 * Changed definition of GO:0030715 from "The increase in volume of an oocyte during the growth phase of the egg chamber, once the egg chamber has left the germarium." to "The increase in volume of an oocyte during the growth phase of the egg chamber, once the egg chamber has left the germarium. An example of this process is found in Drosophila melanogaster." * Deleted synonym "oocyte growth (sensu Insecta)" from GO:0030715 * Deleted synonym "establishment of localization of oocyte nucleus during oocyte axis determination (sensu Insecta)" from GO:0030722 * Deleted synonym "establishment of oocyte nucleus localization during oocyte axis determination (sensu Insecta)" from GO:0030722 * Changed synonym scope of GO:0030722 from "Exact" to "Broad" * Deleted synonym "nucleus positioning in oocyte during oocyte axis determination (sensu Insecta)" from GO:0030722 * Changed synonym scope of GO:0030722 from "Exact" to "Broad" * Deleted synonym "oocyte axis determination, establishment of localization of nucleus (sensu Insecta)" from GO:0030722 * Changed synonym scope of GO:0030722 from "Exact" to "Broad" * Deleted synonym "oocyte axis determination, establishment of oocyte nucleus localization (sensu Insecta)" from GO:0030722 * Changed synonym scope of GO:0030722 from "Exact" to "Broad" * Deleted synonym "oocyte axis determination, establishment of position of nucleus (sensu Insecta)" from GO:0030722 * Changed synonym scope of GO:0030722 from "Exact" to "Broad" * Deleted synonym "oocyte axis determination, positioning of nucleus (sensu Insecta)" from GO:0030722 * Changed synonym scope of GO:0030722 from "Exact" to "Broad" * Deleted synonym "oocyte nucleus positioning during oocyte axis determination (sensu Insecta)" from GO:0030722 * Added synonym "establishment of oocyte nucleus localization during oocyte axis determination " to GO:0030722 * Changed synonym scope of GO:0030722 from "Related" to "Broad" * Changed definition of GO:0030727 from "Formation of a cluster of germ-line cells, in the germarium, derived from a single founder cell (cystoblast)." to "Formation of a cluster of germ-line cells, in the germarium, derived from a single founder cell (cystoblast). An example of this process is found in Drosophila melanogaster." * Deleted synonym "female germ-line cyst formation (sensu Insecta)" from GO:0030727 * Changed definition of GO:0030930 from "A protein complex composed of four identical subunits that possesses ADPG pyrophosphorylase activity." to "A protein complex composed of four identical subunits that possesses ADPG pyrophosphorylase activity. Examples of this component are found in Bacterial species." * Deleted synonym "ADPG pyrophosphorylase complex (sensu Bacteria)" from GO:0030930 * Changed definition of GO:0030931 from "A protein complex composed of four different subunits that possesses ADPG pyrophosphorylase activity." to "A protein complex composed of four different subunits that possesses ADPG pyrophosphorylase activity. An example of this process is found in Mus musculus." * Deleted synonym "ADPG pyrophosphorylase complex (sensu Eukaryota)" from GO:0030931 * Deleted synonym "NADH dehydrogenase complex (plastoquinone) (sensu Cyanobacteria)" from GO:0030964 * Deleted synonym "NADH dehydrogenase complex (quinone) (sensu Bacteria)" from GO:0030964 * Deleted synonym "NADH dehydrogenase complex (ubiquinone) (sensu Bacteria)" from GO:0030964 * Added synonym "NADH dehydrogenase complex (quinone)" to GO:0030964 * Changed synonym scope of GO:0030964 from "Related" to "Narrow" * Added synonym "NADH dehydrogenase complex (ubiquinone)" to GO:0030964 * Changed synonym scope of GO:0030964 from "Related" to "Narrow" * Deleted synonym "spindle pole body duplication (sensu Schizosaccharomyces)" from GO:0031046 * Deleted synonym "embryonic eye development (sensu Actinopterygii)" from GO:0031076 * Changed definition of GO:0031077 from "The process occurring during the post-embryonic phase whose specific outcome is the progression of the eye over time, from its formation to the mature structure." to "The process occurring during the post-embryonic phase whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure." * Deleted synonym "post-embryonic eye development (sensu Actinopterygii)" from GO:0031077 * Changed definition of GO:0031149 from "The process whereby a relatively unspecialized cell acquires specialized features of a sorocarp stalk cell, any of the cellulose-covered cells that form the stalk of a sorocarp." to "The process whereby a relatively unspecialized cell acquires specialized features of a sorocarp stalk cell, any of the cellulose-covered cells that form the stalk of a sorocarp. An example of this process is found in Dictyostelium discoideum." * Changed definition of GO:0031150 from "The process whose specific outcome is the progression of the sorocarp stalk over time, from its formation to the mature structure. The sorocarp stalk is a tubular structure that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein." to "The process whose specific outcome is the progression of the sorocarp stalk over time, from its formation to the mature structure. The sorocarp stalk is a tubular structure that consists of cellulose-covered cells stacked on top of each other and surrounded by an acellular stalk tube composed of cellulose and glycoprotein. An example of this process is found in Dictyostelium discoideum." * Deleted synonym "stalk development (sensu Dictyosteliida)" from GO:0031150 * Deleted synonym "stalk formation (sensu Dictyosteliida)" from GO:0031150 * Added synonym "stalk development" to GO:0031150 * Changed synonym scope of GO:0031150 from "Related" to "Broad" * Added synonym "stalk formation" to GO:0031150 * Changed synonym scope of GO:0031150 from "Related" to "Broad" * Changed definition of GO:0031156 from "Any process that modulates the frequency, rate or extent of sorocarp development." to "Any process that modulates the frequency, rate or extent of sorocarp development. An example of this process is found in Dictyostelium discoideum." * Deleted synonym "regulation of fruiting body development (sensu Dictyosteliida)" from GO:0031156 * Deleted synonym "regulation of fruiting body formation (sensu Dictyosteliida)" from GO:0031156 * Added synonym "regulation of fruiting body development" to GO:0031156 * Changed synonym scope of GO:0031156 from "Related" to "Broad" * Added synonym "regulation of fruiting body formation" to GO:0031156 * Changed synonym scope of GO:0031156 from "Related" to "Broad" * Deleted synonym "otolith mineralization (sensu Tetrapoda)" from GO:0031173 * Deleted synonym "otolith mineralization (sensu Actinopterygii)" from GO:0031174 * Deleted synonym "Sec complex (sensu Eukaryota)" from GO:0031205 * Deleted synonym "intrinsic to outer membrane (sensu Gram-negative Bacteria)" from GO:0031230 * Deleted synonym "intrinsic to outer membrane (sensu Proteobacteria)" from GO:0031230 * Deleted synonym "extrinsic to external side of plasma membrane, in periplasmic space (sensu Gram-negative Bacteria)" from GO:0031236 * Deleted synonym "extrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria)" from GO:0031236 * Deleted synonym "intrinsic to external side of plasma membrane, in periplasmic space (sensu Gram-negative Bacteria)" from GO:0031237 * Deleted synonym "intrinsic to external side of plasma membrane, in periplasmic space (sensu Proteobacteria)" from GO:0031237 * Deleted synonym "extrinsic to outer membrane (sensu Gram-negative Bacteria)" from GO:0031244 * Deleted synonym "extrinsic to outer membrane (sensu Proteobacteria)" from GO:0031244 * Changed definition of GO:0031285 from "Any process that modulates the frequency, rate or extent of sorocarp stalk cell differentiation." to "Any process that modulates the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum." * Changed definition of GO:0031286 from "Any process that stops, prevents or reduces the frequency, rate or extent of sorocarp stalk cell differentiation." to "Any process that stops, prevents or reduces the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum." * Changed definition of GO:0031287 from "Any process that activates or increases the frequency, rate or extent of sorocarp stalk cell differentiation." to "Any process that activates or increases the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum." * Changed definition of GO:0031288 from "The process by which the sorocarp is generated and organized. Morphogenesis pertains to the creation of form." to "The process by which the sorocarp is generated and organized. Morphogenesis pertains to the creation of form. An example of this process is found in Dictyostelium discoideum." * Deleted synonym "fruiting body morphogenesis (sensu Dictyosteliida)" from GO:0031288 * Added synonym "fruiting body morphogenesis" to GO:0031288 * Changed synonym scope of GO:0031288 from "Related" to "Broad" * Deleted synonym "forespore formation (sensu Fungi)" from GO:0031321 * Added synonym "forespore formation" to GO:0031321 * Added definition dbxref GOC:dph to GO:0031424 * Added definition dbxref GOC:sdb_2009 to GO:0031424 * Added definition dbxref GOC:tb to GO:0031424 * Deleted GO:0031424 --part_of--> GO:0009913 * Created link GO:0031424 -part_of-> GO:0030216 * Changed definition of GO:0031476 from "A myosin complex containing a dimer of class VI myosin heavy chains and associated light chains. Myosin VI has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain; a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments." to "A myosin complex containing one or more class VI myosin heavy chains and associated light chains. Myosin VI has a single IQ motif in the neck and a tail region with a coiled coil domain followed by a unique globular domain; a unique insertion that enables myosin VI to move towards the pointed or minus end of actin filaments." * Deleted synonym "cell wall organisation (sensu Bacteria)" from GO:0031504 * Deleted synonym "cell wall organization and biogenesis (sensu Bacteria)" from GO:0031504 * Deleted synonym "cell wall organisation (sensu Fungi)" from GO:0031505 * Deleted synonym "cell wall organization and biogenesis (sensu Fungi)" from GO:0031505 * Deleted synonym "Sec complex (sensu Bacteria)" from GO:0031522 * Added synonym "Sec complex" to GO:0031522 * Changed synonym scope of GO:0031522 from "Related" to "Broad" * Deleted synonym "cytosolic proteasome complex (sensu Eukaryota)" from GO:0031597 * Deleted synonym "cytosolic proteasome regulatory particle (sensu Eukaryota)" from GO:0031600 * Deleted synonym "cytosolic proteasome core complex (sensu Eukaryota)" from GO:0031603 * Deleted synonym "cytosolic proteasome core complex, alpha-subunit complex (sensu Eukaryota)" from GO:0031606 * Deleted synonym "cytosolic proteasome core complex, beta-subunit complex (sensu Eukaryota)" from GO:0031609 * Deleted synonym "cytosolic proteasome regulatory particle, base subcomplex (sensu Eukaryota)" from GO:0031612 * Deleted synonym "cytosolic proteasome regulatory particle, lid subcomplex (sensu Eukaryota)" from GO:0031615 * Deleted synonym "thylakoid membrane (sensu Cyanobacteria)" from GO:0031676 * Deleted synonym "thylakoid lumen (sensu Cyanobacteria)" from GO:0031979 * Deleted synonym "actomyosin ring (sensu Saccharomyces)" from GO:0032157 * Deleted synonym "cytokinetic ring (sensu Saccharomyces)" from GO:0032157 * Added synonym "actomyosin ring" to GO:0032157 * Changed synonym scope of GO:0032157 from "Related" to "Broad" * Added synonym "cytokinetic ring" to GO:0032157 * Changed synonym scope of GO:0032157 from "Related" to "Broad" * Changed name of GO:0033467 from "CMP-ketodeoxyoctanoate metabolic process" to "CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process" * Changed definition of GO:0033467 from "The chemical reactions and pathways involving CMP-ketodeoxyoctanoate, a substance composed of 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate." to "The chemical reactions and pathways involving CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic sugar 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate." * Deleted synonym "CMP-3-deoxy-D-manno-octulosonic acid metabolic process" from GO:0033467 * Deleted synonym "CMP-ketodeoxyoctanoate metabolism" from GO:0033467 * Added synonym "CMP-keto-3-deoxy-D-manno-octulosonic acid metabolism" to GO:0033467 * Changed synonym scope of GO:0033467 from "Related" to "Exact" * Added synonym "CMP-ketodeoxyoctanoate metabolic process" to GO:0033467 * Added general dbxref ISBN:0198506732 to synonym CMP-ketodeoxyoctanoate metabolic process of GO:0033467 * Changed name of GO:0033468 from "CMP-ketodeoxyoctanoate biosynthetic process" to "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" * Changed definition of GO:0033468 from "The chemical reactions and pathways resulting in the formation of CMP-ketodeoxyoctanoate, a substance composed of 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate." to "The chemical reactions and pathways resulting in the formation of CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic sugar 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate." * Deleted synonym "CMP-3-deoxy-D-manno-octulosonic acid biosynthetic process" from GO:0033468 * Deleted synonym "CMP-ketodeoxyoctanoate anabolism" from GO:0033468 * Deleted synonym "CMP-ketodeoxyoctanoate biosynthesis" from GO:0033468 * Deleted synonym "CMP-ketodeoxyoctanoate formation" from GO:0033468 * Deleted synonym "CMP-ketodeoxyoctanoate synthesis" from GO:0033468 * Added synonym "CMP-keto-3-deoxy-D-manno-octulosonic acid anabolism" to GO:0033468 * Changed synonym scope of GO:0033468 from "Related" to "Exact" * Added synonym "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthesis" to GO:0033468 * Changed synonym scope of GO:0033468 from "Related" to "Exact" * Added synonym "CMP-keto-3-deoxy-D-manno-octulosonic acid formation" to GO:0033468 * Changed synonym scope of GO:0033468 from "Related" to "Exact" * Added synonym "CMP-keto-3-deoxy-D-manno-octulosonic acid synthesis" to GO:0033468 * Changed synonym scope of GO:0033468 from "Related" to "Exact" * Added synonym "CMP-ketodeoxyoctanoate biosynthetic process" to GO:0033468 * Added general dbxref ISBN:0198506732 to synonym CMP-ketodeoxyoctanoate biosynthetic process of GO:0033468 * Changed definition of GO:0034306 from "Any process that modulates the frequency, rate or extent of spore formation from the products of meiosis." to "Any process that modulates the frequency, rate or extent of spore formation from the products of meiosis. An example of this is found in Saccharomyces cerevisiae." * Deleted synonym "MAPKKK cascade during sporulation (sensu Fungi)" from GO:0034306 * Added synonym "MAPKKK cascade during sporulation" to GO:0034306 * Changed synonym scope of GO:0034306 from "Related" to "Narrow" * Changed definition of GO:0034307 from "Any process that modulates the frequency, rate or extent of ascospore formation." to "Any process that modulates the frequency, rate or extent of ascospore formation. An example of this process is found in Saccharomyces cerevisiae." * Deleted synonym "MAPKKK cascade during sporulation (sensu Saccharomyces)" from GO:0034307 * Added synonym "MAPKKK cascade during sporulation" to GO:0034307 * Changed synonym scope of GO:0034307 from "Related" to "Narrow" * Changed definition of GO:0035052 from "The commitment of dorsal vessel cardioblast cells to an aortic cell fate and their capacity to differentiate into aortic cells." to "The commitment of dorsal vessel cardioblast cells to an aortic cell fate and their capacity to differentiate into aortic cells. An example of this process is found in Drosophila melanogaster." * Deleted synonym "aortic cell fate commitment (sensu Insecta)" from GO:0035052 * Changed definition of GO:0035053 from "The commitment of dorsal vessel cardioblast cells to a heart proper cell fate and their capacity to differentiate into heart cells." to "The commitment of dorsal vessel cardioblast cells to a heart proper cell fate and their capacity to differentiate into heart cells. An example of this process is found in Drosophila melanogaster." * Deleted synonym "heart proper cell fate commitment (sensu Insecta)" from GO:0035053 * Deleted synonym "hemocyte cell migration (sensu Arthropoda)" from GO:0035099 * Deleted synonym "hemocyte migration (sensu Arthropoda)" from GO:0035099 * Added synonym "hemocyte cell migration" to GO:0035099 * Changed synonym scope of GO:0035099 from "Related" to "Exact" * Changed definition of GO:0035109 from "The process by which the anatomical structures of limbs that are derived from an imaginal disc are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping." to "The process by which the anatomical structures of limbs that are derived from an imaginal disc are generated and organized. Morphogenesis pertains to the creation of form. A limb is an appendage of an animal used for locomotion or grasping. An example of this process is found in Drosophila melanogaster." * Deleted synonym "limb morphogenesis (sensu Endopterygota)" from GO:0035109 * Deleted synonym "appendage morphogenesis (sensu Endopterygota)" from GO:0035114 * Deleted synonym "embryonic hemocyte cell differentiation (sensu Arthropoda)" from GO:0035163 * Deleted synonym "embryonic hemocyte differentiation (sensu Arthropoda)" from GO:0035163 * Added synonym "embryonic hemocyte cell differentiation" to GO:0035163 * Changed synonym scope of GO:0035163 from "Related" to "Exact" * Deleted synonym "lymph gland haemopoiesis (sensu Arthropoda)" from GO:0035167 * Deleted synonym "lymph gland hemopoiesis (sensu Arthropoda)" from GO:0035167 * Changed definition of GO:0035168 from "The process whereby a relatively unspecialized cell derived from the larval lymph gland acquires the specialized features of a mature hemocyte. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen." to "The process whereby a relatively unspecialized cell derived from the larval lymph gland acquires the specialized features of a mature hemocyte. The lymph gland consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this process is found in Drosophila melanogaster." * Deleted synonym "lymph gland hemocyte cell differentiation (sensu Arthropoda)" from GO:0035168 * Deleted synonym "lymph gland hemocyte differentiation (sensu Arthropoda)" from GO:0035168 * Deleted synonym "hemocyte proliferation (sensu Arthropoda)" from GO:0035172 * Changed definition of GO:0035193 from "Reorganization of the pre-existing, functional larval central nervous system into one that can serve the novel behavioral needs of the adult." to "Reorganization of the pre-existing, functional larval central nervous system into one that can serve the novel behavioral needs of the adult. An example of this process is found in Drosophila melanogaster." * Deleted synonym "central nervous system remodeling (sensu Insecta)" from GO:0035193 * Changed definition of GO:0035202 from "Formation of the tracheal sacs, the first tube-like structures to form in the open tracheal system. Once cells are determined to their tracheal cell fate, the tracheal sacs arise by invagination of each ectodermal cluster of tracheal placode cells, between 5 and 7 hours after egg laying." to "Formation of the tracheal sacs, the first tube-like structures to form in the open tracheal system. Once cells are determined to their tracheal cell fate, the tracheal sacs arise by invagination of each ectodermal cluster of tracheal placode cells, between 5 and 7 hours after egg laying. An example of this is found in Drosophila melanogaster." * Deleted synonym "tracheal sac formation (sensu Insecta)" from GO:0035202 * Added synonym "tracheal sac formation" to GO:0035202 * Changed synonym scope of GO:0035202 from "Related" to "Exact" * Changed definition of GO:0035206 from "Any process that modulates the frequency, rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen." to "Any process that modulates the frequency, rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster." * Deleted synonym "regulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035206 * Changed definition of GO:0035207 from "Any process that stops, prevents or reduces the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen." to "Any process that stops, prevents or reduces the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster." * Deleted synonym "down regulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035207 * Deleted synonym "down-regulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035207 * Deleted synonym "downregulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035207 * Deleted synonym "inhibition of hemocyte proliferation (sensu Arthropoda)" from GO:0035207 * Deleted synonym "negative regulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035207 * Added synonym "down regulation of hemocyte proliferation" to GO:0035207 * Changed synonym scope of GO:0035207 from "Related" to "Exact" * Added synonym "down-regulation of hemocyte proliferation" to GO:0035207 * Changed synonym scope of GO:0035207 from "Related" to "Exact" * Added synonym "downregulation of hemocyte proliferation" to GO:0035207 * Changed synonym scope of GO:0035207 from "Related" to "Exact" * Added synonym "inhibition of hemocyte proliferation" to GO:0035207 * Changed synonym scope of GO:0035207 from "Related" to "Narrow" * Changed definition of GO:0035208 from "Any process that activates or increases the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen." to "Any process that activates or increases the rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) that are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this process is found in Drosophila melanogaster." * Deleted synonym "activation of hemocyte proliferation (sensu Arthropoda)" from GO:0035208 * Deleted synonym "positive regulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035208 * Deleted synonym "stimulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035208 * Deleted synonym "up regulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035208 * Deleted synonym "up-regulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035208 * Deleted synonym "upregulation of hemocyte proliferation (sensu Arthropoda)" from GO:0035208 * Added synonym "activation of hemocyte proliferation" to GO:0035208 * Changed synonym scope of GO:0035208 from "Related" to "Narrow" * Added synonym "stimulation of hemocyte proliferation" to GO:0035208 * Changed synonym scope of GO:0035208 from "Related" to "Narrow" * Added synonym "up regulation of hemocyte proliferation" to GO:0035208 * Changed synonym scope of GO:0035208 from "Related" to "Exact" * Added synonym "up-regulation of hemocyte proliferation" to GO:0035208 * Changed synonym scope of GO:0035208 from "Related" to "Exact" * Added synonym "upregulation of hemocyte proliferation" to GO:0035208 * Changed synonym scope of GO:0035208 from "Related" to "Exact" * Changed definition of GO:0035209 from "The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects which undergo a complete metamorphosis." to "The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects that undergo a complete metamorphosis." * Deleted synonym "pupal development (sensu Insecta)" from GO:0035209 * Changed definition of GO:0035210 from "The process whose specific outcome is the progression of the prepupa over time, from its formation to the mature structure. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects which undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation." to "The process whose specific outcome is the progression of the prepupa over time, from its formation to the mature structure. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects that undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation." * Deleted synonym "prepupal development (sensu Insecta)" from GO:0035210 * Deleted synonym "cell competition (sensu Metazoa)" from GO:0035212 * Changed definition of GO:0035293 from "The process that gives rise to the patterns of cell differentiation in the chitin-based larval cuticle." to "The process that gives rise to the patterns of cell differentiation in the chitin-based larval cuticle. An example of this is found in Drosophila melanogaster." * Deleted synonym "larval cuticle pattern formation (sensu Insecta)" from GO:0035293 * Deleted synonym "hair organization (sensu Insecta)" from GO:0035316 * Deleted synonym "trichome organisation (sensu Insecta)" from GO:0035316 * Deleted synonym "trichome organization and biogenesis (sensu Insecta)" from GO:0035316 * Added synonym "trichome organisation" to GO:0035316 * Changed synonym scope of GO:0035316 from "Related" to "Broad" * Added synonym "trichome organization and biogenesis" to GO:0035316 * Changed synonym scope of GO:0035316 from "Related" to "Broad" * Changed definition of GO:0035317 from "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an imaginal disc-derived wing hair. A wing hair is an actin-rich, polarized, non-sensory apical projection that protrudes from each of the approximately 30,000 wing epithelial cells." to "A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of an imaginal disc-derived wing hair. A wing hair is an actin-rich, polarized, non-sensory apical projection that protrudes from each of the approximately 30,000 wing epithelial cells. An example of this is found in Drosophila melanogaster." * Deleted synonym "wing trichome organization and biogenesis (sensu Insecta)" from GO:0035317 * Added synonym "wing trichome organization and biogenesis" to GO:0035317 * Changed synonym scope of GO:0035317 from "Related" to "Exact" * Deleted synonym "mitotic spindle positioning (sensu Fungi)" from GO:0040001 * Deleted synonym "mitotic spindle positioning (sensu Saccharomyces)" from GO:0040001 * Deleted synonym "mitotic spindle positioning and orientation (sensu Saccharomyces)" from GO:0040001 * Deleted synonym "mitotic spindle positioning or orientation (sensu Fungi)" from GO:0040001 * Added synonym "mitotic spindle positioning and orientation" to GO:0040001 * Changed synonym scope of GO:0040001 from "Related" to "Narrow" * Changed definition of GO:0040002 from "Synthesis and deposition of a collagen and cuticulin-based noncellular, hardened, or membranous secretion from an epithelial sheet." to "Synthesis and deposition of a collagen and cuticulin-based noncellular, hardened, or membranous secretion from an epithelial sheet. An example of this process is found in Caenorhabditis elegans." * Deleted synonym "cuticle anabolism (sensu Nematoda)" from GO:0040002 * Deleted synonym "cuticle biosynthetic process (sensu Nematoda)" from GO:0040002 * Deleted synonym "cuticle formation (sensu Nematoda)" from GO:0040002 * Deleted synonym "cuticle synthesis (sensu Nematoda)" from GO:0040002 * Added synonym "cuticle anabolism" to GO:0040002 * Changed synonym scope of GO:0040002 from "Related" to "Exact" * Added synonym "cuticle biosynthetic process" to GO:0040002 * Changed synonym scope of GO:0040002 from "Related" to "Exact" * Added synonym "cuticle formation" to GO:0040002 * Changed synonym scope of GO:0040002 from "Related" to "Exact" * Added synonym "cuticle synthesis" to GO:0040002 * Changed synonym scope of GO:0040002 from "Related" to "Exact" * Changed definition of GO:0040003 from "Synthesis and deposition of a chitin-based noncellular, hardened, or membranous secretion from an epithelial sheet." to "Synthesis and deposition of a chitin-based noncellular, hardened, or membranous secretion from an epithelial sheet. An example of this process is found in Drosophila melanogaster." * Deleted synonym "cuticle anabolism (sensu Insecta)" from GO:0040003 * Deleted synonym "cuticle biosynthetic process (sensu Insecta)" from GO:0040003 * Deleted synonym "cuticle formation (sensu Insecta)" from GO:0040003 * Deleted synonym "cuticle synthesis (sensu Insecta)" from GO:0040003 * Added synonym "cuticle anabolism" to GO:0040003 * Changed synonym scope of GO:0040003 from "Related" to "Broad" * Added synonym "cuticle biosynthetic process" to GO:0040003 * Changed synonym scope of GO:0040003 from "Related" to "Broad" * Added synonym "cuticle formation" to GO:0040003 * Changed synonym scope of GO:0040003 from "Related" to "Broad" * Added synonym "cuticle synthesis" to GO:0040003 * Changed synonym scope of GO:0040003 from "Related" to "Broad" * Changed definition of GO:0040004 from "Attaching of a collagen and cuticulin-based cuticle to the epithelium underlying it." to "Attaching of a collagen and cuticulin-based cuticle to the epithelium underlying it. An example of this process is found in Caenorhabditis elegans." * Deleted synonym "cuticular attachment to epithelium (sensu Nematoda)" from GO:0040004 * Added synonym "cuticular attachment to epithelium" to GO:0040004 * Changed synonym scope of GO:0040004 from "Related" to "Broad" * Changed definition of GO:0040005 from "Attaching of a chitin-containing cuticle to the epithelium underlying it." to "Attaching of a chitin-containing cuticle to the epithelium underlying it. An example of this process is found in Drosophila melanogaster." * Deleted synonym "cuticular attachment to epithelium (sensu Insecta)" from GO:0040005 * Added synonym "cuticular attachment to epithelium" to GO:0040005 * Changed synonym scope of GO:0040005 from "Related" to "Broad" * Deleted synonym "cuticular attachment to epithelium (sensu Protostomia and Nematoda)" from GO:0040006 * Added synonym "cuticular attachment to epithelium" to GO:0040006 * Changed synonym scope of GO:0040006 from "Related" to "Broad" * Deleted synonym "hermaphrodite germ-line sex determination (sensu Nematoda)" from GO:0040021 * Deleted synonym "feminization of hermaphroditic germ-line (sensu Nematoda)" from GO:0040022 * Deleted synonym "adult eye photoreceptor development (sensu Drosophila)" from GO:0042051 * Deleted synonym "eye photoreceptor development (sensu Endopterygota)" from GO:0042051 * Added synonym "adult eye photoreceptor development" to GO:0042051 * Changed synonym scope of GO:0042051 from "Related" to "Narrow" * Deleted synonym "establishment of ommatidial polarity (sensu Endopterygota)" from GO:0042067 * Deleted synonym "cone cell differentiation (sensu Endopterygota)" from GO:0042675 * Deleted synonym "cone cell fate commitment (sensu Endopterygota)" from GO:0042676 * Deleted synonym "cone cell fate specification (sensu Endopterygota)" from GO:0042679 * Deleted synonym "cone cell fate determination (sensu Endopterygota)" from GO:0042680 * Deleted synonym "regulation of cone cell fate specification (sensu Endopterygota)" from GO:0042682 * Changed synonym scope of GO:0042683 from "Exact" to "Broad" * Deleted synonym "down regulation of cone cell fate specification (sensu Endopterygota)" from GO:0042683 * Changed synonym scope of GO:0042683 from "Exact" to "Broad" * Deleted synonym "down-regulation of cone cell fate specification (sensu Endopterygota)" from GO:0042683 * Changed synonym scope of GO:0042683 from "Exact" to "Broad" * Deleted synonym "downregulation of cone cell fate specification (sensu Endopterygota)" from GO:0042683 * Changed synonym scope of GO:0042683 from "Narrow" to "Broad" * Deleted synonym "inhibition of cone cell fate specification (sensu Endopterygota)" from GO:0042683 * Deleted synonym "negative regulation of cone cell fate specification (sensu Endopterygota)" from GO:0042683 * Deleted synonym "suppression of cone cell fate (sensu Drosophila)" from GO:0042683 * Added synonym "suppression of cone cell fate" to GO:0042683 * Changed synonym scope of GO:0042683 from "Related" to "Broad" * Created link GO:0043433 -OBO_REL:is_a-> GO:0090048 * Deleted GO:0044128 --OBO_REL:is_a--> GO:0045927 * Created link GO:0044128 -OBO_REL:is_a-> GO:0044148 * Deleted GO:0044129 --OBO_REL:is_a--> GO:0051094 * Created link GO:0044129 -OBO_REL:is_a-> GO:0044149 * Deleted GO:0044130 --OBO_REL:is_a--> GO:0045926 * Created link GO:0044130 -OBO_REL:is_a-> GO:0044146 * Deleted GO:0044131 --OBO_REL:is_a--> GO:0051093 * Created link GO:0044131 -OBO_REL:is_a-> GO:0044147 * Deleted GO:0044140 --OBO_REL:is_a--> GO:0045926 * Created link GO:0044140 -OBO_REL:is_a-> GO:0044146 * Deleted GO:0044141 --OBO_REL:is_a--> GO:0051093 * Created link GO:0044141 -OBO_REL:is_a-> GO:0044147 * Deleted GO:0044142 --OBO_REL:is_a--> GO:0045927 * Created link GO:0044142 -OBO_REL:is_a-> GO:0044148 * Deleted GO:0044143 --OBO_REL:is_a--> GO:0051094 * Created link GO:0044143 -OBO_REL:is_a-> GO:0044149 * Created link GO:0044145 -OBO_REL:is_a-> GO:0050793 * Changed name of GO:0044461 from "flagellin-based flagellum part" to "bacterial-type flagellum part" * Added synonym "flagellin-based flagellum part" to GO:0044461 * Changed synonym scope of GO:0044461 from "Related" to "Exact" * Changed name of GO:0046400 from "ketodeoxyoctanoate metabolic process" to "keto-3-deoxy-D-manno-octulosonic acid metabolic process" * Changed definition of GO:0046400 from "The chemical reactions and pathways involving ketodeoxyoctanoate, 2-keto-3-deoxy-D-octanoate, an acid present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria." to "The chemical reactions and pathways involving keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria." * Added definition dbxref ChEBI:32817 to GO:0046400 * Deleted synonym "3-deoxy-D-manno-octulosonic acid metabolic process" from GO:0046400 * Deleted synonym "ketodeoxyoctanoate metabolism" from GO:0046400 * Added synonym "KDO metabolic process" to GO:0046400 * Added general dbxref GOC:mah to synonym KDO metabolic process of GO:0046400 * Changed synonym scope of GO:0046400 from "Related" to "Exact" * Added synonym "KDO metabolism" to GO:0046400 * Added general dbxref GOC:mah to synonym KDO metabolism of GO:0046400 * Changed synonym scope of GO:0046400 from "Related" to "Exact" * Added synonym "keto-3-deoxy-D-manno-octulosonic acid metabolism" to GO:0046400 * Changed synonym scope of GO:0046400 from "Related" to "Exact" * Added synonym "ketodeoxyoctanoate metabolic process" to GO:0046400 * Added general dbxref ISBN:0198506732 to synonym ketodeoxyoctanoate metabolic process of GO:0046400 * Added definition dbxref GOC:dph to GO:0046619 * Added definition dbxref GOC:sdb_2009 to GO:0046619 * Added definition dbxref GOC:tb to GO:0046619 * Deleted GO:0046619 --part_of--> GO:0048593 * Created link GO:0046619 -part_of-> GO:0060900 * Deleted synonym "retina cell programmed cell death (sensu Endopterygota)" from GO:0046667 * Deleted synonym "retinal cell programmed cell death (sensu Endopterygota)" from GO:0046667 * Added synonym "retina cell programmed cell death" to GO:0046667 * Changed synonym scope of GO:0046667 from "Related" to "Exact" * Deleted synonym "corneal lens development (sensu Endopterygota)" from GO:0048058 * Deleted synonym "compound eye development (sensu Endopterygota)" from GO:0048749 * Deleted synonym "eye development (sensu Endopterygota)" from GO:0048749 * Deleted synonym "corneal lens morphogenesis (sensu Endopterygota)" from GO:0048750 * Deleted GO:0048752 --OBO_REL:is_a--> GO:0009653 * Created link GO:0048752 -OBO_REL:is_a-> GO:0035239 * Created link GO:0048752 -part_of-> GO:0060872 * Created link GO:0051090 -OBO_REL:is_a-> GO:0090046 * Created link GO:0051091 -OBO_REL:is_a-> GO:0090047 * Created link GO:0060557 -OBO_REL:is_a-> GO:0010893 * Created link GO:0060579 -part_of-> GO:0021513 * Deleted GO:0060796 --OBO_REL:is_a--> GO:0006357 * Created link GO:0060860 -OBO_REL:is_a-> GO:0009909 * Created link GO:0060862 -OBO_REL:is_a-> GO:0051093 * Created link GO:0070786 -OBO_REL:is_a-> GO:0090033 * Created link GO:0090061 -OBO_REL:is_a-> GO:0001558 * Created link GO:0090063 -OBO_REL:is_a-> GO:0051495 * Created link GO:0090065 -OBO_REL:is_a-> GO:0060147 From gocvs at genome.stanford.edu Fri Aug 14 21:30:11 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 14 Aug 2009 21:30:11 -0700 Subject: [Go-diff] GO update 08/14/2009 Message-ID: <200908150430.n7F4UBKg012073@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.752 by 1.755 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060903 * Created object of type obo:TERM with id GO:0060904 * Created object of type obo:TERM with id GO:0060905 * Created object of type obo:TERM with id GO:0060906 * [Changed name of GO:0060903 from "null" to "positive regulation of meiosis I", Set definition of GO:0060903 to "Any process that increases the rate, frequency, or extent of meiosis I, a cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells.", Added definition dbxref GOC:dph to GO:0060903, Added definition dbxref GOC:tb to GO:0060903, Created link GO:0060903 -OBO_REL:is_a-> GO:0060631, Created link GO:0060903 -positively_regulates-> GO:0007127, Assigned namespace "biological_process" to GO:0060903] * Changed name of GO:0060903 from "null" to "positive regulation of meiosis I" * Set definition of GO:0060903 to "Any process that increases the rate, frequency, or extent of meiosis I, a cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells." * Added definition dbxref GOC:dph to GO:0060903 * Added definition dbxref GOC:tb to GO:0060903 * Created link GO:0060903 -OBO_REL:is_a-> GO:0060631 * Created link GO:0060903 -positively_regulates-> GO:0007127 * Assigned namespace "biological_process" to GO:0060903 * [Changed name of GO:0060904 from "null" to "regulation of protein folding in endoplasmic reticulum", Set definition of GO:0060904 to "Any process that modulates the rate, frequency or extent of the protein folding process that takes place in the endoplasmic reticulum (ER). Secreted, plasma membrane and organelle proteins are folded in the ER, assisted by chaperones and foldases (protein disulphide isomerases), and additional factors required for optimal folding (ATP, Ca2+ and an oxidizing environment to allow disulfide bond formation).", Added definition dbxref GOC:dph to GO:0060904, Added definition dbxref GOC:tb to GO:0060904, Created link GO:0060904 -OBO_REL:is_a-> GO:0032268, Created link GO:0060904 -regulates-> GO:0034975, Assigned namespace "biological_process" to GO:0060904] * Changed name of GO:0060904 from "null" to "regulation of protein folding in endoplasmic reticulum" * Set definition of GO:0060904 to "Any process that modulates the rate, frequency or extent of the protein folding process that takes place in the endoplasmic reticulum (ER). Secreted, plasma membrane and organelle proteins are folded in the ER, assisted by chaperones and foldases (protein disulphide isomerases), and additional factors required for optimal folding (ATP, Ca2+ and an oxidizing environment to allow disulfide bond formation)." * Added definition dbxref GOC:dph to GO:0060904 * Added definition dbxref GOC:tb to GO:0060904 * Created link GO:0060904 -OBO_REL:is_a-> GO:0032268 * Created link GO:0060904 -regulates-> GO:0034975 * Assigned namespace "biological_process" to GO:0060904 * [Changed name of GO:0060905 from "null" to "regulation of induction of conjugation upon nitrogen starvation", Set definition of GO:0060905 to "Any process that modulates the frequency of induction of conjugation upon nitrogen starvation, the process by which a cell initiates conjugation with cellular fusion upon nitrogen starvation.", Added definition dbxref GOC:dph to GO:0060905, Added definition dbxref GOC:tb to GO:0060905, Created link GO:0060905 -regulates-> GO:0031142, Created link GO:0060905 -OBO_REL:is_a-> GO:0080134, Assigned namespace "biological_process" to GO:0060905] * Changed name of GO:0060905 from "null" to "regulation of induction of conjugation upon nitrogen starvation" * Set definition of GO:0060905 to "Any process that modulates the frequency of induction of conjugation upon nitrogen starvation, the process by which a cell initiates conjugation with cellular fusion upon nitrogen starvation." * Added definition dbxref GOC:dph to GO:0060905 * Added definition dbxref GOC:tb to GO:0060905 * Created link GO:0060905 -regulates-> GO:0031142 * Created link GO:0060905 -OBO_REL:is_a-> GO:0080134 * Assigned namespace "biological_process" to GO:0060905 * [Changed name of GO:0060906 from "null" to "negative regulation of chromatin silencing by small RNA", Set definition of GO:0060906 to "Any process that decreases the frequency, rate or extent of chromatin silencing by small RNA. Chromatin silencing by small RNA is the repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region.", Added definition dbxref GOC:dph to GO:0060906, Added definition dbxref GOC:tb to GO:0060906, Created link GO:0060906 -negatively_regulates-> GO:0031048, Created link GO:0060906 -OBO_REL:is_a-> GO:0010964, Assigned namespace "biological_process" to GO:0060906] * Changed name of GO:0060906 from "null" to "negative regulation of chromatin silencing by small RNA" * Set definition of GO:0060906 to "Any process that decreases the frequency, rate or extent of chromatin silencing by small RNA. Chromatin silencing by small RNA is the repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region." * Added definition dbxref GOC:dph to GO:0060906 * Added definition dbxref GOC:tb to GO:0060906 * Created link GO:0060906 -negatively_regulates-> GO:0031048 * Created link GO:0060906 -OBO_REL:is_a-> GO:0010964 * Assigned namespace "biological_process" to GO:0060906 * Changed definition of GO:0007282 from "The four rounds of incomplete mitosis undergone by the cystoblast to form a 16-cell cyst. Within the cyst, one cell differentiates into an oocyte while the rest become nurse cells." to "The four rounds of incomplete mitosis undergone by the cystoblast to form a 16-cell cyst. Within the cyst, one cell differentiates into an oocyte while the rest become nurse cells. An example of this is found in Drosophila melanogaster." * Deleted synonym "vulval development (sensu Nematoda)" from GO:0040025 * Deleted synonym "activation of vulval development (sensu Nematoda)" from GO:0040026 * Deleted synonym "positive regulation of vulval development (sensu Nematoda)" from GO:0040026 * Deleted synonym "stimulation of vulval development (sensu Nematoda)" from GO:0040026 * Deleted synonym "up regulation of vulval development (sensu Nematoda)" from GO:0040026 * Deleted synonym "up-regulation of vulval development (sensu Nematoda)" from GO:0040026 * Deleted synonym "upregulation of vulval development (sensu Nematoda)" from GO:0040026 * Added synonym "activation of vulval development" to GO:0040026 * Added synonym "stimulation of vulval development" to GO:0040026 * Added synonym "up regulation of vulval development" to GO:0040026 * Added synonym "up-regulation of vulval development" to GO:0040026 * Added synonym "upregulation of vulval development" to GO:0040026 * Deleted synonym "down regulation of vulval development (sensu Nematoda)" from GO:0040027 * Deleted synonym "down-regulation of vulval development (sensu Nematoda)" from GO:0040027 * Deleted synonym "downregulation of vulval development (sensu Nematoda)" from GO:0040027 * Deleted synonym "inhibition of vulval development (sensu Nematoda)" from GO:0040027 * Deleted synonym "negative regulation of vulval development (sensu Nematoda)" from GO:0040027 * Added synonym "down regulation of vulval development" to GO:0040027 * Changed synonym scope of GO:0040027 from "Related" to "Exact" * Added synonym "down-regulation of vulval development" to GO:0040027 * Changed synonym scope of GO:0040027 from "Related" to "Exact" * Added synonym "downregulation of vulval development" to GO:0040027 * Changed synonym scope of GO:0040027 from "Related" to "Exact" * Added synonym "inhibition of vulval development" to GO:0040027 * Changed synonym scope of GO:0040027 from "Related" to "Narrow" * Added synonym "negative regulation of vulval development" to GO:0040027 * Changed synonym scope of GO:0040027 from "Related" to "Exact" * Deleted synonym "regulation of vulval development (sensu Nematoda)" from GO:0040028 * Changed definition of GO:0042001 from "The determination of sex and sexual phenotypes in a hermaphroditic organism's soma." to "The determination of sex and sexual phenotypes in a hermaphroditic organism's soma. An example of this is found in Caenorhabditis elegans." * Deleted synonym "hermaphrodite somatic sex determination (sensu Nematoda)" from GO:0042001 * Changed definition of GO:0042003 from "Promotion of male sex and sexual phenotypes in the hermaphroditic nematode soma." to "Promotion of male sex and sexual phenotypes in the hermaphroditic nematode soma. An example of this is found in Caenorhabditis elegans." * Deleted synonym "masculinization of hermaphrodite soma (sensu Nematoda)" from GO:0042003 * Changed definition of GO:0042004 from "Promotion of female sex and sexual phenotypes in the hermaphroditic soma." to "Promotion of female sex and sexual phenotypes in the hermaphroditic soma. An example of this is found in Caenorhabditis elegans." * Deleted synonym "feminization of hermaphrodite soma (sensu Nematoda)" from GO:0042004 * Changed definition of GO:0042006 from "The determination of male sex and sexual phenotype in the germ-line of the hermaphrodite." to "The determination of male sex and sexual phenotype in the germ-line of the hermaphrodite. An example of this is found in Caenorhabditis elegans." * Deleted synonym "masculinization of hermaphroditic germ-line (sensu Nematoda)" from GO:0042006 * Changed definition of GO:0042070 from "Maintenance of the oocyte nucleus in a particular position within the cell during the establishment and maintenance of the axes of the oocyte." to "Maintenance of the oocyte nucleus in a particular position within the cell during the establishment and maintenance of the axes of the oocyte. An example of this process is found In Drosophila melanogaster." * Changed synonym scope of GO:0042070 from "Related" to "Broad" * Deleted synonym "maintenance of oocyte nucleus localization during oocyte axis determination (sensu Insecta)" from GO:0042070 * Changed synonym scope of GO:0042070 from "Exact" to "Broad" * Deleted synonym "maintenance of oocyte nucleus position during oocyte axis determination (sensu Insecta)" from GO:0042070 * Changed synonym scope of GO:0042070 from "Exact" to "Broad" * Deleted synonym "oocyte axis determination, maintenance of oocyte nucleus localization (sensu Insecta)" from GO:0042070 * Changed synonym scope of GO:0042070 from "Exact" to "Broad" * Deleted synonym "oocyte axis determination, maintenance of oocyte nucleus position (sensu Insecta)" from GO:0042070 * Changed synonym scope of GO:0042070 from "Exact" to "Broad" * Deleted synonym "oocyte axis determination, oocyte nucleus anchoring (sensu Insecta)" from GO:0042070 * Changed synonym scope of GO:0042070 from "Exact" to "Broad" * Deleted synonym "oocyte nucleus anchoring during oocyte axis determination (sensu Insecta)" from GO:0042070 * Changed definition of GO:0042243 from "The aggregation, arrangement and bonding together of a set of components to form an asexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from a product of mitosis." to "The aggregation, arrangement and bonding together of a set of components to form an asexual spore wall, the specialized envelope lying outside the cell membrane of a spore derived from a product of mitosis. Examples of this process are found in Bacterial species." * Deleted synonym "spore wall assembly (sensu Bacteria)" from GO:0042243 * Changed definition of GO:0042329 from "The action of a molecule that contributes to the structural integrity of a collagen and cuticulin-based cuticle." to "The action of a molecule that contributes to the structural integrity of a collagen and cuticulin-based cuticle. An example of this process is found in Caenorhabditis elegans." * Deleted synonym "structural constituent of cuticle (sensu Nematoda)" from GO:0042329 * Added synonym "structural constituent of cuticle" to GO:0042329 * Changed synonym scope of GO:0042329 from "Related" to "Broad" * Changed definition of GO:0042336 from "Synthesis and deposition of a protein-based noncellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle." to "Synthesis and deposition of a protein-based noncellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. Examples of this process are found in invertebrate species." * Deleted synonym "cuticle anabolism during molting (sensu Protostomia and Nematoda)" from GO:0042336 * Deleted synonym "cuticle biosynthetic process during molting (sensu Protostomia and Nematoda)" from GO:0042336 * Deleted synonym "cuticle formation during molting (sensu Protostomia and Nematoda)" from GO:0042336 * Deleted synonym "cuticle synthesis during molting (sensu Protostomia and Nematoda)" from GO:0042336 * Added synonym "cuticle anabolism during molting" to GO:0042336 * Changed synonym scope of GO:0042336 from "Related" to "Broad" * Added synonym "cuticle biosynthetic process during molting" to GO:0042336 * Changed synonym scope of GO:0042336 from "Related" to "Broad" * Added synonym "cuticle formation during molting" to GO:0042336 * Changed synonym scope of GO:0042336 from "Related" to "Broad" * Added synonym "cuticle synthesis during molting" to GO:0042336 * Changed synonym scope of GO:0042336 from "Related" to "Broad" * Changed definition of GO:0042337 from "The synthesis and deposition of a chitin-based noncellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle." to "The synthesis and deposition of a chitin-based non-cellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. An example of this is found in Drosophila melanogaster." * Deleted synonym "cuticle anabolism during molting (sensu Insecta)" from GO:0042337 * Deleted synonym "cuticle biosynthetic process during molting (sensu Insecta)" from GO:0042337 * Deleted synonym "cuticle formation during molting (sensu Insecta)" from GO:0042337 * Deleted synonym "cuticle synthesis during molting (sensu Insecta)" from GO:0042337 * Added synonym "cuticle anabolism during molting" to GO:0042337 * Changed synonym scope of GO:0042337 from "Related" to "Broad" * Added synonym "cuticle biosynthetic process during molting" to GO:0042337 * Changed synonym scope of GO:0042337 from "Related" to "Broad" * Added synonym "cuticle formation during molting" to GO:0042337 * Changed synonym scope of GO:0042337 from "Related" to "Broad" * Added synonym "cuticle synthesis during molting" to GO:0042337 * Changed synonym scope of GO:0042337 from "Related" to "Broad" * Changed definition of GO:0042338 from "Synthesis and deposition of a collagen and cuticulin-based noncellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle." to "Synthesis and deposition of a collagen and cuticulin-based noncellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. An example of this process is found in Caenorhabditis elegans." * Deleted synonym "cuticle anabolism during molting (sensu Nematoda)" from GO:0042338 * Deleted synonym "cuticle biosynthetic process during molting (sensu Nematoda)" from GO:0042338 * Deleted synonym "cuticle formation during molting (sensu Nematoda)" from GO:0042338 * Deleted synonym "cuticle synthesis during molting (sensu Nematoda)" from GO:0042338 * Added synonym "cuticle anabolism during molting" to GO:0042338 * Changed synonym scope of GO:0042338 from "Related" to "Broad" * Added synonym "cuticle biosynthetic process during molting" to GO:0042338 * Changed synonym scope of GO:0042338 from "Related" to "Broad" * Added synonym "cuticle formation during molting" to GO:0042338 * Changed synonym scope of GO:0042338 from "Related" to "Broad" * Added synonym "cuticle synthesis during molting" to GO:0042338 * Changed synonym scope of GO:0042338 from "Related" to "Broad" * Deleted synonym "hemocyte differentiation (sensu Arthropoda)" from GO:0042386 * Deleted synonym "NADH dehydrogenase (ubiquinone) complex, peripheral segment (sensu Eukaryota)" from GO:0042652 * Deleted synonym "NADH-Q oxidoreductase complex, peripheral segment (sensu Eukaryota)" from GO:0042652 * Deleted synonym "respiratory chain complex I, peripheral segment (sensu Eukaryota)" from GO:0042652 * Added synonym "NADH dehydrogenase (ubiquinone) complex, peripheral segment" to GO:0042652 * Changed synonym scope of GO:0042652 from "Related" to "Broad" * Added synonym "NADH-Q oxidoreductase complex, peripheral segment" to GO:0042652 * Changed synonym scope of GO:0042652 from "Related" to "Broad" * Deleted synonym "NADH-Q oxidoreductase complex, membrane segment (sensu Eukaryota)" from GO:0042653 * Deleted synonym "respiratory chain complex I, membrane segment (sensu Eukaryota)" from GO:0042653 * Added synonym "NADH-Q oxidoreductase complex, membrane segment" to GO:0042653 * Changed synonym scope of GO:0042653 from "Related" to "Broad" * Deleted synonym "ATP synthesis coupled electron transport (sensu Eukaryota)" from GO:0042775 * Deleted synonym "ATP synthesis coupled proton transport (sensu Eukaryota)" from GO:0042776 * Deleted synonym "flagellar part (sensu Bacteria)" from GO:0044461 * Changed definition of GO:0045497 from "The process whose specific outcome is the progression of the analia of the female over time, from formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc." to "The process whose specific outcome is the progression of the analia of the female over time, from formation to the mature structure. The analia is the posterior-most vertral appendage that develops from the genital disc. An example of this process is found in Drosophila melanogaster." * Deleted synonym "female analia development (sensu Endopterygota)" from GO:0045497 * Deleted GO:0045616 --OBO_REL:is_a--> GO:0045595 * Created link GO:0045616 -OBO_REL:is_a-> GO:0045604 * Deleted GO:0045617 --OBO_REL:is_a--> GO:0045596 * Created link GO:0045617 -OBO_REL:is_a-> GO:0045605 * Deleted GO:0045618 --OBO_REL:is_a--> GO:0045597 * Created link GO:0045618 -OBO_REL:is_a-> GO:0045606 * Changed definition of GO:0048052 from "The process whereby relatively unspecialized cells acquire the specialized features of R1 and R6 photoreceptors." to "The process whereby relatively unspecialized cells acquire the specialized features of R1 and R6 photoreceptors. An example of this process is found in Drosophila melanogaster." * Deleted synonym "R1/R6 cell differentiation (sensu Endopterygota)" from GO:0048052 * Changed definition of GO:0048053 from "The process whose specific outcome is the progression of the R1 and R6 pair of photoreceptors in the eye over time, from their formation to the