[Go-diff] GO update 02/12/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Thu Feb 12 21:30:48 PST 2009 

OBODIFF of gene_ontology_write.obo version 1.441 by 1.442

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070325
* Created object of type obo:TERM with id GO:0070326
* Created object of type obo:TERM with id GO:0070327
* Created object of type obo:TERM with id GO:0070328
* Created object of type obo:TERM with id GO:0070329
* Created object of type obo:TERM with id GO:0070330
* Created object of type obo:TERM with id GO:0070331
* Created object of type obo:TERM with id GO:0070332
* Created object of type obo:TERM with id GO:0070333
* Created object of type obo:TERM with id GO:0070334
* Populated new object GO:0070325 (macro)
  * Changed name of GO:0070325 from "<new term>" to "lipoprotein receptor binding"
  * Set definition of GO:0070325 to "Interacting selectively with a lipoprotein receptor."
  * Added definition dbxref GOC:rl to GO:0070325
  * Copied GO:0070325 to GO:0005102 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070325
* Populated new object GO:0070326 (macro)
  * Changed name of GO:0070326 from "<new term>" to "very-low-density lipoprotein receptor binding"
  * Set definition of GO:0070326 to "Interacting selectively with a very-low-density lipoprotein receptor."
  * Added definition dbxref GOC:mah to GO:0070326
  * Added synonym "VLDL receptor binding" to GO:0070326
  * Added general dbxref GOC:mah to synonym VLDL receptor binding of GO:0070326
  * Changed synonym scope of GO:0070326 from "Related" to "Exact"
  * Added synonym "VLDLR binding" to GO:0070326
  * Added general dbxref GOC:mah to synonym VLDLR binding of GO:0070326
  * Changed synonym scope of GO:0070326 from "Related" to "Exact"
  * Copied GO:0070326 to GO:0070325 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070326
* Populated new object GO:0070327 (macro)
  * Changed name of GO:0070327 from "<new term>" to "thyroid hormone transport"
  * Set definition of GO:0070327 to "The directed movement of thyroid hormone into, out of, within or between cells."
  * Added definition dbxref GOC:rph to GO:0070327
  * Added synonym "thyroxine transport" to GO:0070327
  * Added general dbxref GOC:mah to synonym thyroxine transport of GO:0070327
  * Changed synonym scope of GO:0070327 from "Related" to "Narrow"
  * Added synonym "triiodothyronine transport" to GO:0070327
  * Added general dbxref GOC:mah to synonym triiodothyronine transport of GO:0070327
  * Changed synonym scope of GO:0070327 from "Related" to "Narrow"
  * Copied GO:0070327 to GO:0009914 with type OBO_REL:is_a
  * Copied GO:0070327 to GO:0051937 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070327
* Populated new object GO:0070328 (macro)
  * Changed name of GO:0070328 from "<new term>" to "triglyceride homeostasis"
  * Set definition of GO:0070328 to "Any process involved in the maintenance of an internal equilibrium of triglyceride within an organism or cell."
  * Added definition dbxref GOC:mah to GO:0070328
  * Added synonym "triacylglycerol homeostasis" to GO:0070328
  * Added general dbxref GOC:rl to synonym triacylglycerol homeostasis of GO:0070328
  * Changed synonym scope of GO:0070328 from "Related" to "Exact"
  * Copied GO:0070328 to GO:0055088 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070328
* Populated new object GO:0070329 (macro)
  * Changed name of GO:0070329 from "<new term>" to "tRNA seleno-modification"
  * Set definition of GO:0070329 to "The addition a selenium atom to a nucleotide in a tRNA molecule."
  * Added definition dbxref GOC:mah to GO:0070329
  * Added definition dbxref PMID:14594807 to GO:0070329
  * Added GO:0070329 to category gosubset_prok
  * Added synonym "tRNA base modification to selenouridine" to GO:0070329
  * Added general dbxref GOC:mah to synonym tRNA base modification to selenouridine of GO:0070329
  * Changed synonym scope of GO:0070329 from "Related" to "Exact"
  * Copied GO:0070329 to GO:0006400 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070329
* Populated new object GO:0070330 (macro)
  * Changed name of GO:0070330 from "<new term>" to "aromatase activity"
  * Set definition of GO:0070330 to "Catalysis of the reduction of an aliphatic ring to yield an aromatic ring."
  * Added definition dbxref GOC:cb to GO:0070330
  * Added general dbxref EC:1.14.14.1 to GO:0070330
  * Added general dbxref MetaCyc:UNSPECIFIC-MONOOXYGENASE-RXN to GO:0070330
  * Added general dbxref UM-BBD_enzymeID:e0551 to GO:0070330
  * Added GO:0070330 to category gosubset_prok
  * Added synonym "estrogen synthetase activity" to GO:0070330
  * Changed synonym scope of GO:0070330 from "Related" to "Narrow"
  * Copied GO:0070330 to GO:0016712 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070330
* Populated new object GO:0070331 (macro)
  * Changed name of GO:0070331 from "<new term>" to "CD20-Lck-Fyn complex"
  * Set definition of GO:0070331 to "A protein complex that contains the cell-surface protein CD20 and the Src family tyrosine kinases Lck and Fyn."
  * Added definition dbxref GOC:mah to GO:0070331
  * Added definition dbxref PMID:7545683 to GO:0070331
  * Copied GO:0070331 to GO:0044464 with type OBO_REL:is_a
  * Copied GO:0070331 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070331
* Populated new object GO:0070332 (macro)
  * Changed name of GO:0070332 from "<new term>" to "CD20-Lck-Lyn-Fyn complex"
  * Set definition of GO:0070332 to "A protein complex that contains the cell-surface protein CD20 and the Src family tyrosine kinases Lck, Lyn and Fyn."
  * Added definition dbxref GOC:mah to GO:0070332
  * Added definition dbxref PMID:7545683 to GO:0070332
  * Copied GO:0070332 to GO:0044464 with type OBO_REL:is_a
  * Copied GO:0070332 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070332
* Populated new object GO:0070333 (macro)
  * Changed name of GO:0070333 from "<new term>" to "alpha6-beta4 integrin-Shc-Grb2 complex"
  * Set definition of GO:0070333 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to the adaptor proteins Shc and Grb2."
  * Added definition dbxref PMID:7556090 to GO:0070333
  * Added synonym "ITGA6-ITGB4-SHC-GRB2 complex" to GO:0070333
  * Added general dbxref CORUM:3096 to synonym ITGA6-ITGB4-SHC-GRB2 complex of GO:0070333
  * Changed synonym scope of GO:0070333 from "Related" to "Narrow"
  * Copied GO:0070333 to GO:0044459 with type OBO_REL:is_a
  * Copied GO:0070333 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070333
* Populated new object GO:0070334 (macro)
  * Changed name of GO:0070334 from "<new term>" to "alpha6-beta4 integrin-laminin 5 complex"
  * Set definition of GO:0070334 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to laminin 5."
  * Added definition dbxref GOC:mah to GO:0070334
  * Added definition dbxref PMID:7556090 to GO:0070334
  * Added synonym "ITGA6-ITGB4-LAMA5 complex" to GO:0070334
  * Added general dbxref CORUM:2322 to synonym ITGA6-ITGB4-LAMA5 complex of GO:0070334
  * Changed synonym scope of GO:0070334 from "Related" to "Narrow"
  * Copied GO:0070334 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0070334 to GO:0044459 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070334
* Changed definition of GO:0001514 from "The incorporation of selenocysteine into a peptide; uses a special tRNA that recognizes the UGA codon as selenocysteine, rather than as a termination codon. Selenocysteine is synthesized from serine before its incorporation, it is not a posttranslational modification of peptidyl-cysteine." to "The incorporation of selenocysteine into a peptide; uses a special tRNA that recognizes the UGA codon as selenocysteine, rather than as a termination codon. Selenocysteine is synthesized from serine before its incorporation; it is not a posttranslational modification of peptidyl-cysteine."
* added secondary id GO:0008402 to GO:0016712
* added secondary id GO:0050381 to GO:0016712
* Added general dbxref MetaCyc:UNSPECIFIC-MONOOXYGENASE-RXN to GO:0016712
* Added general dbxref UM-BBD_enzymeID:e0551 to GO:0016712
* Added synonym "aryl hydrocarbon hydroxylase activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym aryl hydrocarbon hydroxylase activity of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Narrow"
* Added synonym "aryl-4-monooxygenase activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym aryl-4-monooxygenase activity of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Narrow"
* Added synonym "cytochrome p450 activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym cytochrome p450 activity of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Narrow"
* Added synonym "cytochrome P450 CYP19" to GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Narrow"
* Added synonym "flavoprotein monooxygenase activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym flavoprotein monooxygenase activity of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Exact"
* Added synonym "flavoprotein-linked monooxygenase activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym flavoprotein-linked monooxygenase activity of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Exact"
* Added synonym "microsomal monooxygenase activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym microsomal monooxygenase activity of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Narrow"
* Added synonym "microsomal P-450" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym microsomal P-450 of GO:0016712
* Added synonym "microsomal p450 activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym microsomal p450 activity of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Narrow"
* Added synonym "substrate,reduced-flavoprotein:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym substrate,reduced-flavoprotein:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing) of GO:0016712
* Changed synonym scope of GO:0016712 from "Related" to "Exact"
* Added synonym "unspecific monooxygenase activity" to GO:0016712
* Added synonym "xenobiotic monooxygenase activity" to GO:0016712
* Added general dbxref EC:1.14.14.1 to synonym xenobiotic monooxygenase activity of GO:0016712
* Copied GO:0048242 to GO:0070327 with type OBO_REL:is_a
* Deleted GO:0050381 --OBO_REL:is_a--> GO:0016712
* Destroyed object GO:0050381
* Changed definition of GO:0050750 from "Interacting selectively with a low density lipoprotein receptor." to "Interacting selectively with a low-density lipoprotein receptor."
* Deleted GO:0050750 --OBO_REL:is_a--> GO:0005102
* Copied GO:0050750 to GO:0070325 with type OBO_REL:is_a
* Copied GO:0051625 to GO:0070327 with type OBO_REL:is_a

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