[Go-diff] GO update 02/26/2009
Remote CVS for Gene Ontology
gocvs at genome.stanford.edu
Thu Feb 26 21:30:51 PST 2009
OBODIFF of gene_ontology_write.obo version 1.458 by 1.460
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0044054
* Created object of type obo:TERM with id GO:0044055
* Created object of type obo:TERM with id GO:0044056
* Created object of type obo:TERM with id GO:0044057
* Created object of type obo:TERM with id GO:0044058
* Created object of type obo:TERM with id GO:0044059
* Created object of type obo:TERM with id GO:0044060
* Created object of type obo:TERM with id GO:0044061
* Created object of type obo:TERM with id GO:0044062
* Created object of type obo:TERM with id GO:0044063
* Created object of type obo:TERM with id GO:0044064
* Created object of type obo:TERM with id GO:0044065
* Created object of type obo:TERM with id GO:0044066
* Created object of type obo:TERM with id GO:0044067
* Created object of type obo:TERM with id GO:0044068
* Created object of type obo:TERM with id GO:0044069
* Created object of type obo:TERM with id GO:0044070
* Created object of type obo:TERM with id GO:0070451
* Created object of type obo:TERM with id GO:0070452
* Created object of type obo:TERM with id GO:0070453
* Created object of type obo:TERM with id GO:0070454
* Created object of type obo:TERM with id GO:0070455
* Populated new object GO:0044054 (macro)
* Changed name of GO:0044054 from "<new term>" to "rounding by symbiont of host cells"
* Set definition of GO:0044054 to "Any process by which an organism causes host cells to change shape and become round."
* Added definition dbxref GOC:mlg to GO:0044054
* Added GO:0044054 to category gosubset_prok
* Copied GO:0044054 to GO:0044004 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044054
* Populated new object GO:0044055 (macro)
* Changed name of GO:0044055 from "<new term>" to "modulation by symbiont of host system process"
* Set definition of GO:0044055 to "The alteration by a symbiont organism of the functioning of a system process in the host. A system process is a multicellular organismal process carried out by any of the organs or tissues in an organ system."
* Added definition dbxref GOC:mlg to GO:0044055
* Added synonym "regulation by symbiont of host system process " to GO:0044055
* Changed synonym scope of GO:0044055 from "Related" to "Exact"
* Copied GO:0044055 to GO:0044003 with type OBO_REL:is_a
* Copied GO:0044055 to GO:0044057 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044055
* Populated new object GO:0044056 (macro)
* Changed name of GO:0044056 from "<new term>" to "modulation by symbiont of host digestive system process"
* Set definition of GO:0044056 to "The alteration by a symbiont organism of the functioning of a digestive system process, a physical, chemical, or biochemical process carried out by the host organism to break down ingested nutrients into components that may be easily absorbed and directed into metabolism."
* Added definition dbxref GOC:jl to GO:0044056
* Added synonym "regulation by symbiont of host digestive system process" to GO:0044056
* Changed synonym scope of GO:0044056 from "Related" to "Exact"
* Copied GO:0044056 to GO:0044055 with type OBO_REL:is_a
* Copied GO:0044056 to GO:0044058 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044056
* Populated new object GO:0044057 (macro)
* Changed name of GO:0044057 from "<new term>" to "regulation of system process"
* Set definition of GO:0044057 to "Any process that modulates the frequency, rate or extent of a system process, a multicellular organismal process carried out by any of the organs or tissues in an organ system."
* Added definition dbxref GOC:jl to GO:0044057
* Copied GO:0044057 to GO:0051239 with type OBO_REL:is_a
* Copied GO:0044057 to GO:0003008 with type regulates
* Assigned namespace "biological_process" to GO:0044057
* Populated new object GO:0044058 (macro)
* Changed name of GO:0044058 from "<new term>" to "regulation of digestive system process"
* Set definition of GO:0044058 to "Any process that modulates the frequency, rate or extent of a digestive system process, a physical, chemical, or biochemical process carried out by living organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism."
* Added definition dbxref GOC:jl to GO:0044058
* Copied GO:0044058 to GO:0022600 with type regulates
* Copied GO:0044058 to GO:0044057 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044058
* Populated new object GO:0044059 (macro)
* Changed name of GO:0044059 from "<new term>" to "modulation by symbiont of host endocrine process"
* Set definition of GO:0044059 to "The alteration by a symbiont organism of the functioning of a endocrine process, any of the hormonal, neural, and secretory processes that release products into the blood or lymph, in the host organism."
* Added definition dbxref GOC:jl to GO:0044059
* Added GO:0044059 to category gosubset_prok
* Added synonym "regulation by symbiont of host endocrine process" to GO:0044059
* Changed synonym scope of GO:0044059 from "Related" to "Exact"
* Copied GO:0044059 to GO:0044060 with type OBO_REL:is_a
* Copied GO:0044059 to GO:0044055 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044059
* Populated new object GO:0044060 (macro)
* Changed name of GO:0044060 from "<new term>" to "regulation of endocrine process"
* Set definition of GO:0044060 to "Any process that modulates the frequency, rate or extent of an endocrine process, any of the hormonal, neural, and secretory processes that release products into the blood or lymph."
* Added definition dbxref GOC:jl to GO:0044060
* Added synonym "regulation of endocrine system process" to GO:0044060
* Changed synonym scope of GO:0044060 from "Related" to "Exact"
* Copied GO:0044060 to GO:0044057 with type OBO_REL:is_a
* Copied GO:0044060 to GO:0050886 with type regulates
* Assigned namespace "biological_process" to GO:0044060
* Populated new object GO:0044061 (macro)
* Changed name of GO:0044061 from "<new term>" to "modulation by symbiont of host excretion"
* Set definition of GO:0044061 to "The alteration by a symbiont organism of the functioning of excretion, the elimination by the host organism of the waste products that arise as a result of metabolic activity."
* Added definition dbxref GOC:jl to GO:0044061
* Added GO:0044061 to category gosubset_prok
* Added synonym "regulation by symbiont of host excretion " to GO:0044061
* Changed synonym scope of GO:0044061 from "Related" to "Exact"
* Copied GO:0044061 to GO:0044055 with type OBO_REL:is_a
* Copied GO:0044061 to GO:0044062 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044061
* Populated new object GO:0044062 (macro)
* Changed name of GO:0044062 from "<new term>" to "regulation of excretion"
* Set definition of GO:0044062 to "Any process that modulates the frequency, rate, or extent of excretion, the elimination by an organism of the waste products that arise as a result of metabolic activity."
* Added definition dbxref GOC:jl to GO:0044062
* Copied GO:0044062 to GO:0044057 with type OBO_REL:is_a
* Copied GO:0044062 to GO:0007588 with type regulates
* Assigned namespace "biological_process" to GO:0044062
* Populated new object GO:0044063 (macro)
* Changed name of GO:0044063 from "<new term>" to "modulation by symbiont of host neurological system process"
* Set definition of GO:0044063 to "The alteration by a symbiont organism of the functioning of a host neurophysiological process, an organ system process carried out by any of the organs or tissues of neurological system."
* Added definition dbxref GOC:jl to GO:0044063
* Added GO:0044063 to category gosubset_prok
* Added synonym "regulation by symbiont of host neurological system process" to GO:0044063
* Changed synonym scope of GO:0044063 from "Related" to "Exact"
* Copied GO:0044063 to GO:0044055 with type OBO_REL:is_a
* Copied GO:0044063 to GO:0031644 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044063
* Populated new object GO:0044064 (macro)
* Changed name of GO:0044064 from "<new term>" to "modulation by symbiont of host respiratory system process"
* Set definition of GO:0044064 to "The alteration by a symbiont organism of the functioning of a respiratory system process, an organ system process carried out by any of the organs or tissues of the respiratory system."
* Added definition dbxref GOC:jl to GO:0044064
* Added GO:0044064 to category gosubset_prok
* Added synonym "regulation by symbiont of host respiratory system process " to GO:0044064
* Changed synonym scope of GO:0044064 from "Related" to "Exact"
* Copied GO:0044064 to GO:0044065 with type OBO_REL:is_a
* Copied GO:0044064 to GO:0044055 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044064
* Populated new object GO:0044065 (macro)
* Changed name of GO:0044065 from "<new term>" to "regulation of respiratory system process"
* Set definition of GO:0044065 to "Any process that modulates the frequency, rate or extent of a respiratory system process, an organ system process carried out by any of the organs or tissues of the respiratory system."
* Added definition dbxref GOC:jl to GO:0044065
* Copied GO:0044065 to GO:0003016 with type regulates
* Copied GO:0044065 to GO:0044057 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044065
* Populated new object GO:0044066 (macro)
* Changed name of GO:0044066 from "<new term>" to "modification by symbiont of host cell nucleus"
* Set definition of GO:0044066 to "The process by which a symbiont organism effects a change in the structure or function of its host cell nucleus."
* Added definition dbxref GOC:jl to GO:0044066
* Added GO:0044066 to category gosubset_prok
* Added synonym "modification by symbiont of host nucleus " to GO:0044066
* Changed synonym scope of GO:0044066 from "Related" to "Exact"
* Added synonym "modification of host cell nucleus by symbiont" to GO:0044066
* Changed synonym scope of GO:0044066 from "Related" to "Exact"
* Added synonym "modification of host nucleus by symbiont" to GO:0044066
* Changed synonym scope of GO:0044066 from "Related" to "Exact"
* Copied GO:0044066 to GO:0052043 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044066
* Populated new object GO:0044067 (macro)
* Changed name of GO:0044067 from "<new term>" to "modification by symbiont of host intercellular junctions"
* Set definition of GO:0044067 to "The process by which a symbiont organism effects a change in the structure or function of its host intercellular junction, a specialized region of connection between two cells."
* Added definition dbxref GOC:jl to GO:0044067
* Added GO:0044067 to category gosubset_prok
* Added synonym "modification of host intercellular junctions by symbiont " to GO:0044067
* Changed synonym scope of GO:0044067 from "Related" to "Exact"
* Copied GO:0044067 to GO:0052043 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044067
* Populated new object GO:0044068 (macro)
* Changed name of GO:0044068 from "<new term>" to "modulation by symbiont of host cellular process"
* Set definition of GO:0044068 to "Any process by which a symbiont organism modulates the frequency, rate or extent of a cellular process, any process that is carried out at the cellular level, but not necessarily restricted to a single cell, in its host organism."
* Added definition dbxref GOC:jl to GO:0044068
* Added GO:0044068 to category gosubset_prok
* Added synonym "modulation of host cellular process by symbiont" to GO:0044068
* Changed synonym scope of GO:0044068 from "Related" to "Exact"
* Added synonym "regulation by symbiont of host cellular process " to GO:0044068
* Changed synonym scope of GO:0044068 from "Related" to "Exact"
* Added synonym "regulation of host cellular process by symbiont" to GO:0044068
* Changed synonym scope of GO:0044068 from "Related" to "Exact"
* Copied GO:0044068 to GO:0044003 with type OBO_REL:is_a
* Copied GO:0044068 to GO:0050794 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044068
* Populated new object GO:0044069 (macro)
* Changed name of GO:0044069 from "<new term>" to "modification by symbiont of host anion transport"
* Set definition of GO:0044069 to "The process by which a symbiont organism modulates the anion transport, the directed movement of anions, atoms or small molecules with a net negative charge, into, out of, within or between cells, of its host organism."
* Added definition dbxref GOC:jl to GO:0044069
* Added GO:0044069 to category gosubset_prok
* Added synonym "modification of host anion transport by symbiont" to GO:0044069
* Changed synonym scope of GO:0044069 from "Related" to "Exact"
* Copied GO:0044069 to GO:0052038 with type OBO_REL:is_a
* Copied GO:0044069 to GO:0044070 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0044069
* Populated new object GO:0044070 (macro)
* Changed name of GO:0044070 from "<new term>" to "regulation of anion transport"
* Set definition of GO:0044070 to "Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of, within or between cells."
* Added definition dbxref GOC:jl to GO:0044070
* Copied GO:0044070 to GO:0043269 with type OBO_REL:is_a
* Copied GO:0044070 to GO:0006820 with type regulates
* Assigned namespace "biological_process" to GO:0044070
* Populated new object GO:0070451 (macro)
* Changed name of GO:0070451 from "<new term>" to "cell hair"
* Set definition of GO:0070451 to "A long, thin cell projection that contains F-actin and tubulin, with microtubules centrally located and F-actin peripherally located."
* Added definition dbxref PMID:11526084 to GO:0070451
* Added general dbxref Wikipedia:Membrane_nanotube to GO:0070451
* Added GO:0070451 to category goslim_pir
* Added synonym "imaginal disc-derived wing hair" to GO:0070451
* Added general dbxref GOC:mah to synonym imaginal disc-derived wing hair of GO:0070451
* Changed synonym scope of GO:0070451 from "Related" to "Narrow"
* Added synonym "non-sensory hair" to GO:0070451
* Added general dbxref GOC:bf to synonym non-sensory hair of GO:0070451
* Changed synonym scope of GO:0070451 from "Related" to "Exact"
* Copied GO:0070451 to GO:0042995 with type OBO_REL:is_a
* Assigned namespace "cellular_component" to GO:0070451
* Populated new object GO:0070452 (macro)
* Changed name of GO:0070452 from "<new term>" to "positive regulation of ergosterol biosynthetic process"
* Set definition of GO:0070452 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol."
* Added definition dbxref GOC:mah to GO:0070452
* Added synonym "activation of ergosterol biosynthetic process" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Narrow"
* Added synonym "positive regulation of ergosterol anabolism" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Exact"
* Added synonym "positive regulation of ergosterol biosynthesis" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Exact"
* Added synonym "positive regulation of ergosterol formation" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Exact"
* Added synonym "positive regulation of ergosterol synthesis" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Exact"
* Added synonym "stimulation of ergosterol biosynthetic process" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Narrow"
* Added synonym "up regulation of ergosterol biosynthetic process" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Exact"
* Added synonym "up-regulation of ergosterol biosynthetic process" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Exact"
* Added synonym "upregulation of ergosterol biosynthetic process" to GO:0070452
* Changed synonym scope of GO:0070452 from "Related" to "Exact"
* Copied GO:0070452 to GO:0032443 with type OBO_REL:is_a
* Copied GO:0070452 to GO:0010893 with type OBO_REL:is_a
* Copied GO:0070452 to GO:0006696 with type positively_regulates
* Assigned namespace "biological_process" to GO:0070452
* Populated new object GO:0070453 (macro)
* Changed name of GO:0070453 from "<new term>" to "regulation of heme biosynthetic process"
* Set definition of GO:0070453 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme."
* Added definition dbxref GOC:mah to GO:0070453
* Added GO:0070453 to category gosubset_prok
* Added synonym "regulation of haem biosynthesis" to GO:0070453
* Added general dbxref GOC:mah to synonym regulation of haem biosynthesis of GO:0070453
* Changed synonym scope of GO:0070453 from "Related" to "Exact"
* Added synonym "regulation of haem biosynthetic process" to GO:0070453
* Added general dbxref GOC:mah to synonym regulation of haem biosynthetic process of GO:0070453
* Changed synonym scope of GO:0070453 from "Related" to "Exact"
* Added synonym "regulation of heme anabolism" to GO:0070453
* Added general dbxref GOC:mah to synonym regulation of heme anabolism of GO:0070453
* Changed synonym scope of GO:0070453 from "Related" to "Exact"
* Added synonym "regulation of heme biosynthesis" to GO:0070453
* Added general dbxref GOC:mah to synonym regulation of heme biosynthesis of GO:0070453
* Changed synonym scope of GO:0070453 from "Related" to "Exact"
* Added synonym "regulation of heme formation" to GO:0070453
* Added general dbxref GOC:mah to synonym regulation of heme formation of GO:0070453
* Changed synonym scope of GO:0070453 from "Related" to "Exact"
* Added synonym "regulation of heme synthesis" to GO:0070453
* Added general dbxref GOC:mah to synonym regulation of heme synthesis of GO:0070453
* Changed synonym scope of GO:0070453 from "Related" to "Exact"
* Copied GO:0070453 to GO:0051193 with type OBO_REL:is_a
* Copied GO:0070453 to GO:0006783 with type regulates
* Assigned namespace "biological_process" to GO:0070453
* Populated new object GO:0070454 (macro)
* Changed name of GO:0070454 from "<new term>" to "negative regulation of heme biosynthetic process"
* Set definition of GO:0070454 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme."
* Added definition dbxref GOC:mah to GO:0070454
* Added synonym "down regulation of heme biosynthetic process" to GO:0070454
* Added general dbxref GOC:mah to synonym down regulation of heme biosynthetic process of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Added synonym "down-regulation of heme biosynthetic process" to GO:0070454
* Added general dbxref GOC:mah to synonym down-regulation of heme biosynthetic process of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Added synonym "downregulation of heme biosynthetic process" to GO:0070454
* Added general dbxref GOC:mah to synonym downregulation of heme biosynthetic process of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Added synonym "inhibition of heme biosynthetic process" to GO:0070454
* Added general dbxref GOC:mah to synonym inhibition of heme biosynthetic process of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Narrow"
* Added synonym "negative regulation of haem biosynthetic process" to GO:0070454
* Added general dbxref GOC:mah to synonym negative regulation of haem biosynthetic process of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Added synonym "negative regulation of heme anabolism" to GO:0070454
* Added general dbxref GOC:mah to synonym negative regulation of heme anabolism of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Added synonym "negative regulation of heme biosynthesis" to GO:0070454
* Added general dbxref GOC:mah to synonym negative regulation of heme biosynthesis of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Added synonym "negative regulation of heme formation" to GO:0070454
* Added general dbxref GOC:mah to synonym negative regulation of heme formation of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Added synonym "negative regulation of heme synthesis" to GO:0070454
* Added general dbxref GOC:mah to synonym negative regulation of heme synthesis of GO:0070454
* Changed synonym scope of GO:0070454 from "Related" to "Exact"
* Copied GO:0070454 to GO:0051195 with type OBO_REL:is_a
* Copied GO:0070454 to GO:0006783 with type negatively_regulates
* Copied GO:0070454 to GO:0070453 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0070454
* Populated new object GO:0070455 (macro)
* Changed name of GO:0070455 from "<new term>" to "positive regulation of heme biosynthetic process"
* Set definition of GO:0070455 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme."
* Added definition dbxref GOC:mah to GO:0070455
* Added synonym "activation of heme biosynthetic process" to GO:0070455
* Added general dbxref GOC:mah to synonym activation of heme biosynthetic process of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Narrow"
* Added synonym "positive regulation of haem biosynthetic process" to GO:0070455
* Added general dbxref GOC:mah to synonym positive regulation of haem biosynthetic process of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Added synonym "positive regulation of heme anabolism" to GO:0070455
* Added general dbxref GOC:mah to synonym positive regulation of heme anabolism of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Added synonym "positive regulation of heme biosynthesis" to GO:0070455
* Added general dbxref GOC:mah to synonym positive regulation of heme biosynthesis of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Added synonym "positive regulation of heme formation" to GO:0070455
* Added general dbxref GOC:mah to synonym positive regulation of heme formation of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Added synonym "positive regulation of heme synthesis" to GO:0070455
* Added general dbxref GOC:mah to synonym positive regulation of heme synthesis of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Added synonym "stimulation of heme biosynthetic process" to GO:0070455
* Added general dbxref GOC:mah to synonym stimulation of heme biosynthetic process of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Narrow"
* Added synonym "up regulation of heme biosynthetic process" to GO:0070455
* Added general dbxref GOC:mah to synonym up regulation of heme biosynthetic process of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Added synonym "up-regulation of heme biosynthetic process" to GO:0070455
* Added general dbxref GOC:mah to synonym up-regulation of heme biosynthetic process of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Added synonym "upregulation of heme biosynthetic process" to GO:0070455
* Added general dbxref GOC:mah to synonym upregulation of heme biosynthetic process of GO:0070455
* Changed synonym scope of GO:0070455 from "Related" to "Exact"
* Copied GO:0070455 to GO:0006783 with type positively_regulates
* Copied GO:0070455 to GO:0070453 with type OBO_REL:is_a
* Copied GO:0070455 to GO:0051194 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0070455
* Changed comment from "This term was made obsolete because it has been superseded by more accurate terms to represent the biological processes occurring, and it is not clear that this term represents a useful concept." to "This term was made obsolete because it has been superseded by more accurate terms to represent the biological processes occurring, and it is not clear that this term represents a useful entity."
* Changed comment from "Note that this term was split from 'bud site selection/establishment of cell polarity (sensu Saccharomyces) ; GO:0007115' (sibling term 'establishment of cell polarity (sensu Saccharomyces) ; GO:0000283')." to "Note that this term was split from 'bud site selection/establishment of cell polarity (sensu Saccharomyces) ; GO:0007115' (a sibling term, 'establishment of cell polarity (sensu Saccharomyces) ; GO:0000283', was created but has since been merged with 'establishment of cell polarity' ; GO:0030010)."
* Added general dbxref Wikipedia:Intramembranous_ossification to GO:0001957
* Added general dbxref Wikipedia:Endochondral_ossification to GO:0001958
* Added general dbxref Wikipedia:Startle_reaction to GO:0001964
* Added general dbxref Wikipedia:Aggression to GO:0002118
* Added general dbxref Wikipedia:Adaptive_immune_system to GO:0002250
* Added general dbxref Wikipedia:Immune_syntem to GO:0002376
* Added general dbxref Wikipedia:Type_II_hypersensitivity to GO:0002445
* Added general dbxref Wikipedia:Hypersensitivity to GO:0002524
* Deleted GO:0003074 --OBO_REL:is_a--> GO:0051239
* Copied GO:0003074 to GO:0044062 with type OBO_REL:is_a
* Deleted GO:0003078 --OBO_REL:is_a--> GO:0051239
* Copied GO:0003078 to GO:0044062 with type OBO_REL:is_a
* Deleted GO:0003093 --OBO_REL:is_a--> GO:0051239
* Copied GO:0003093 to GO:0044057 with type OBO_REL:is_a
* Added general dbxref Wikipedia:Tubuloglomerular_feedback to GO:0003098
* Changed comment from "This term was made obsolete because the concept belongs in the process ontology." to "This term was made obsolete because the term belongs in the process ontology."
* Changed comment from "Note that this term is not a child of 'alpha-glucosides activity ; GO:0004558', because in the reaction represented by GO:0004339 results in the release of beta-D-glucose, whereas in GO:0004558 alpha-D-glucose is released." to "Note that this term is not a child of 'alpha-glucosidase activity ; GO:0004558', because in the reaction represented by GO:0004339 results in the release of beta-D-glucose, whereas in GO:0004558 alpha-D-glucose is released."
* Changed definition of GO:0004937 from "Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha1-adrenergic receptors." to "Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha1-adrenergic receptors; the activity involves transmitting the signal to the Gq alpha subunit of a heterotrimeric G protein."
* Added definition dbxref GOC:cb to GO:0004937
* Changed definition of GO:0004938 from "Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha2-adrenergic receptors." to "Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of alpha2-adrenergic receptors; the activity involves transmitting the signal to the Gi alpha subunit of a heterotrimeric G protein."
* Added definition dbxref GOC:cb to GO:0004938
* Changed definition of GO:0004939 from "Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta-adrenergic receptors." to "Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta-adrenergic receptors; the activity involves transmitting the signal to the Gs alpha subunit of a heterotrimeric G protein."
* Added definition dbxref GOC:cb to GO:0004939
* Changed comment from "Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'inotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'." to "Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'ionotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'."
* Changed comment from "Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'inotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'." to "Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'ionotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'."
* Changed comment from "Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. One function possessed by this complex is represented by the molecular function term 'casein kinase II ; GO:0004682'." to "Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex."
* Changed definition of GO:0005956 from "Complex that possesses casein kinase activity, found in nearly every subcellular compartment. Protein kinase CK2 complexes are usually tetramers of two alpha and two beta subunits, and can phosphorylate many protein substrates in addition to casein." to "A protein complex that possesses protein serine/threonine kinase activity, and is found in nearly every subcellular compartment. Protein kinase CK2 complexes are usually tetramers of two alpha and two beta subunits, and can phosphorylate many protein substrates in addition to casein."
* Added general dbxref Wikipedia:Carbohydrate_metabolism to GO:0005975
* Added general dbxref Wikipedia:Fructose to GO:0006000
* Added general dbxref Wikipedia:Galactose to GO:0006012
* Added general dbxref Wikipedia:Inositol to GO:0006020
* Added general dbxref Wikipedia:Pyruvic_acid to GO:0006090
* Added general dbxref Wikipedia:Gluconeogenesis to GO:0006094
* Added general dbxref Wikipedia:Glycolysis to GO:0006096
* Added general dbxref Wikipedia:Glyoxylate_cycle to GO:0006097
* Added general dbxref Wikipedia:Pentose_phosphate_pathway to GO:0006098
* Added general dbxref Wikipedia:Tricarboxylic_acid_cycle to GO:0006099
* Added general dbxref Wikipedia:Fermentation_(biochemistry) to GO:0006113
* Added general dbxref Wikipedia:Oxidative_phosphorylation to GO:0006119
* Added general dbxref Wikipedia:ATP_hydrolysis to GO:0006200
* Added general dbxref Wikipedia:DNA_replication to GO:0006260
* Added general dbxref Wikipedia:DNA_repair to GO:0006281
* Added general dbxref Wikipedia:Base_excision_repair to GO:0006284
* Added general dbxref Wikipedia:DNA_mismatch_repair to GO:0006298
* Added general dbxref Wikipedia:Postreplication_repair to GO:0006301
* Added general dbxref Wikipedia:DNA_methylation to GO:0006306
* Added general dbxref Wikipedia:Mitotic_crossover to GO:0006312
* Added general dbxref Wikipedia:Genomic_imprinting to GO:0006349
* Added general dbxref Wikipedia:Transcription_(genetics) to GO:0006350
* Added general dbxref Wikipedia:Post-transcriptional_modification to GO:0006396
* Added general dbxref Wikipedia:Reverse_transcription to GO:0006410
* Added general dbxref Wikipedia:Translation_(genetics) to GO:0006412
* Added general dbxref Wikipedia:Translational_frameshift to GO:0006452
* Added general dbxref Wikipedia:Protein_folding to GO:0006457
* Added general dbxref Wikipedia:Proteolysis to GO:0006508
* Added general dbxref Wikipedia:Arginine to GO:0006525
* Added general dbxref Wikipedia:Cysteine_metabolism to GO:0006534
* Added general dbxref Wikipedia:Glutamic_acid to GO:0006536
* Added general dbxref Wikipedia:Histidine to GO:0006547
* Added general dbxref Wikipedia:Lysine to GO:0006553
* Added general dbxref Wikipedia:Tryptophan to GO:0006568
* Added general dbxref Wikipedia:Tyrosine to GO:0006570
* Added general dbxref Wikipedia:Protein_targeting to GO:0006605
* Added general dbxref Wikipedia:Lipid_metabolism to GO:0006629
* Added general dbxref Wikipedia:Fatty_acid_metabolism to GO:0006631
* Added general dbxref Wikipedia:Fatty_acid_synthesis to GO:0006633
* Added general dbxref Wikipedia:Steroid_metabolisms#Steroid_biosynthesis to GO:0006694
* Added general dbxref Wikipedia:Biotin to GO:0006768
* Added general dbxref Wikipedia:Riboflavin to GO:0006771
* Added general dbxref Wikipedia:Thiamine to GO:0006772
* Added general dbxref Wikipedia:Porphyrin to GO:0006778
* Added general dbxref Wikipedia:Sulfur_metabolism to GO:0006790
* Added general dbxref Wikipedia:Xenobiotic_metabolism to GO:0006805
* Added general dbxref Wikipedia:Carnitine#Role_in_fatty_acid_metabolism to GO:0006853
* Added general dbxref Wikipedia:Exocytosis to GO:0006887
* Added general dbxref Wikipedia:Endocytosis to GO:0006897
* Added general dbxref Wikipedia:Receptor-mediated_endocytosis to GO:0006898
* Added general dbxref Wikipedia:Pinocytosis to GO:0006907
* Added general dbxref Wikipedia:Phagocytosis to GO:0006909
* Added general dbxref Wikipedia:Autophagy_(cellular) to GO:0006914
* Added general dbxref Wikipedia:Apoptosis to GO:0006915
* Added general dbxref Wikipedia:Chemotaxis to GO:0006935
* Added general dbxref Wikipedia:Muscle_contraction to GO:0006936
* Deleted GO:0006937 --OBO_REL:is_a--> GO:0051239
* Copied GO:0006937 to GO:0044057 with type OBO_REL:is_a
* Added general dbxref Wikipedia:Lipid_bilayer_fusion to GO:0006944
* Added general dbxref Wikipedia:Inflammation to GO:0006954
* Added general dbxref Wikipedia:Humoral_immunity to GO:0006959
* Added general dbxref Wikipedia:Microtubule_nucleation to GO:0007020
* Added general dbxref Wikipedia:Cell_cycle to GO:0007049
* Added general dbxref Wikipedia:Chromosome_segregation to GO:0007059
* Added general dbxref Wikipedia:Mitosis to GO:0007067
* Added general dbxref Wikipedia:Mitosis#Endomitosis to GO:0007113
* Changed comment from "This term was made obsolete because it represents two concepts." to "This term was made obsolete because it represents two processes."
* Added general dbxref Wikipedia:Meiosis to GO:0007126
* Added general dbxref Wikipedia:Meiosis#Meiosis_I to GO:0007127
* Added general dbxref Wikipedia:Synapsis to GO:0007129
* Added general dbxref Wikipedia:Meiosis#Meiosis_II to GO:0007135
* Added general dbxref Wikipedia:Cell_signaling to GO:0007154
* Added general dbxref Wikipedia:Cell_adhesion to GO:0007155
* Added general dbxref Wikipedia:Signal_transduction to GO:0007165
* Added general dbxref Wikipedia:Notch_signaling_pathway to GO:0007219
* Added general dbxref Wikipedia:Hedgehog_signaling_pathway to GO:0007224
* Added general dbxref Wikipedia:Neurotransmission to GO:0007268
* Added general dbxref Wikipedia:Spermatogenesis to GO:0007283
* Added general dbxref Wikipedia:Spermiogenesis to GO:0007286
* Added general dbxref Wikipedia:Vitellogenesis to GO:0007296
* Added general dbxref Wikipedia:Insemination to GO:0007320
* Added general dbxref Wikipedia:Acrosome_reaction to GO:0007340
* Added general dbxref Wikipedia:Egg_activation to GO:0007343
* Added general dbxref Wikipedia:Gastrulation to GO:0007369
* Added general dbxref Wikipedia:Axon_guidance to GO:0007411
* Added general dbxref Wikipedia:Synaptogenesis to GO:0007416
* Added general dbxref Wikipedia:Neural_development to GO:0007417
* Added general dbxref Wikipedia:Heart_development to GO:0007507
* Added general dbxref Wikipedia:Sex-determination_system to GO:0007530
* Added general dbxref Wikipedia:Sexual_differentiation to GO:0007548
* Added general dbxref Wikipedia:Dosage_compensation to GO:0007549
* Added general dbxref Wikipedia:Metamorphosis to GO:0007552
* Added general dbxref Wikipedia:Histolysis to GO:0007559
* Added general dbxref Wikipedia:Pupa#Emergence to GO:0007562
* Added general dbxref Wikipedia:Gestation to GO:0007565
* Added general dbxref Wikipedia:AgingSenescence to GO:0007568
* Added general dbxref Wikipedia:Senescence#Cellular_senescence to GO:0007569
* Added general dbxref Wikipedia:Digestion to GO:0007586
* Added general dbxref Wikipedia:Excretion to GO:0007588
* Added general dbxref Wikipedia:Lactation to GO:0007595
* Deleted GO:0008016 --OBO_REL:is_a--> GO:0051239
* Copied GO:0008016 to GO:0044057 with type OBO_REL:is_a
* Deleted GO:0009987 --disjoint_from--> GO:0051704
* Deleted GO:0009987 --disjoint_from--> GO:0032501
* Changed comment from "This term was made obsolete because it did not represent a concept discrete from its sibling terms." to "This term was made obsolete because it did not represent a process discrete from its sibling terms."
* Changed comment from "Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'inotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'." to "Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function terms 'ionotropic glutamate receptor activity ; GO:0004970' and 'cation channel activity ; GO:0005261'."
* Changed comment from "The type II protein secretion system complex does not include components of the Sec or Tat pathways. For components of these pathways, consider annotating to 'cell envelope Sec complex ; GO:0031522' or 'TAT protein translocation system complex ; GO:0033281'." to "Note that the type II protein secretion system complex does not include components of the Sec or Tat pathways. For components of these pathways, consider annotating to 'cell envelope Sec complex ; GO:0031522' or 'TAT protein translocation system complex ; GO:0033281'."
* Changed name of GO:0019054 from "modification by virus of host cellular process" to "modulation by virus of host cellular process"
* Added synonym "modification by virus of host cellular process" to GO:0019054
* Changed synonym scope of GO:0019054 from "Related" to "Exact"
* Deleted GO:0019054 --OBO_REL:is_a--> GO:0044003
* Copied GO:0019054 to GO:0044068 with type OBO_REL:is_a
* Deleted GO:0019229 --OBO_REL:is_a--> GO:0051239
* Copied GO:0019229 to GO:0044057 with type OBO_REL:is_a
* Deleted GO:0030300 --OBO_REL:is_a--> GO:0051239
* Copied GO:0030300 to GO:0044058 with type OBO_REL:is_a
* Changed comment from "This term was made obsolete because it has been superseded by more accurate terms to represent the biological processes occurring, and it is not clear that this term represents a useful concept." to "This term was made obsolete because it has been superseded by more accurate terms to represent the biological processes occurring, and it is not clear that this term represents a useful entity."
* Changed comment from "Note that this concept is a child of 'actin cytoskeleton organization and biogenesis ; GO:0030036' because the actin cytoskeleton is defined as actin filaments and associated proteins." to "Note that this term is a child of 'actin cytoskeleton organization and biogenesis ; GO:0030036' because the actin cytoskeleton is defined as actin filaments and associated proteins."
* Changed comment from "Note that this concept is a child of 'actin cytoskeleton organization and biogenesis ; GO:0030036' because the actin cytoskeleton is defined as actin filaments and associated proteins; myosin structures are sufficiently closely associated with actin filaments to be included with the actin cytoskeleton." to "Note that this term is a child of 'actin cytoskeleton organization and biogenesis ; GO:0030036' because the actin cytoskeleton is defined as actin filaments and associated proteins; myosin structures are sufficiently closely associated with actin filaments to be included with the actin cytoskeleton."
* Changed definition of GO:0031644 from "Any process that modulates the frequency, rate or extent of a neurophysiological process." to "Any process that modulates the frequency, rate or extent of a neurophysiological process, an organ system process carried out by any of the organs or tissues of neurological system."
* Deleted GO:0031644 --OBO_REL:is_a--> GO:0051239
* Copied GO:0031644 to GO:0044057 with type OBO_REL:is_a
* Deleted GO:0042312 --OBO_REL:is_a--> GO:0051239
* Copied GO:0042312 to GO:0044057 with type OBO_REL:is_a
* Deleted GO:0043502 --OBO_REL:is_a--> GO:0051239
* Copied GO:0043502 to GO:0044057 with type OBO_REL:is_a
* Changed comment from "Note that this term is a child of 'extracellular matrix part ; GO:0044420' rather than the more specific 'extracellular matrix (sensu Magnoliophyta) ; GO:0048196', because unlike the usual plant cell wall, the pollen wall does not contain a middle lamella, as specified in the definition of 'extracellular matrix (sensu Magnoliophyta) ; GO:0048196'." to "Note that this term is a child of 'extracellular matrix part ; GO:0044420' rather than the more specific middle lamella-containing extracellular matrix ; GO:0048196', because unlike the usual plant cell wall, the pollen wall does not contain a middle lamella, as specified in the definition of 'middle lamella-containing extracellular matrix ; GO:0048196'."
* Changed comment from "Note that IgM and IgD can be coexpressed by B cells via an alternate splicing mechanism, but true recombinational isotype switching to IgD has been demonstrated as well. Note that this term is best used to annotate gene products which are involved in the mechanism of DNA recombination used in isotype switching, like the B cell specific Swap70 factor in the mouse, rather than gene products which promote isotype switching such as cytokines or co-stimulatory molecules, which should instead be annotated to GO:0045191." to "Note that IgM and IgD can be coexpressed by B cells via an alternate splicing mechanism, but true recombinational isotype switching to IgD has been demonstrated as well. Note that this term is best used to annotate gene products which are involved in the mechanism of DNA recombination used in isotype switching, like the B cell specific Swap70 factor in the mouse, rather than gene products which promote isotype switching such as cytokines or co-stimulatory molecules, which should instead be annotated to 'regulation of isotype switching ; GO:0045191'."
* Deleted GO:0046877 --OBO_REL:is_a--> GO:0051239
* Copied GO:0046877 to GO:0044058 with type OBO_REL:is_a
* Deleted GO:0052026 --OBO_REL:is_a--> GO:0044003
* Copied GO:0052026 to GO:0044068 with type OBO_REL:is_a
* Added synonym "modulation by symbiont of host signal transduction" to GO:0052027
* Added synonym "modulation of host signal transduction by symbiont" to GO:0052027
* Changed synonym scope of GO:0052027 from "Related" to "Exact"
* Added synonym "regulation by symbiont of host signal transduction pathway" to GO:0052027
* Changed synonym scope of GO:0052027 from "Related" to "Exact"
* Deleted GO:0052027 --OBO_REL:is_a--> GO:0044003
* Copied GO:0052027 to GO:0044068 with type OBO_REL:is_a
* Deleted GO:0052038 --OBO_REL:is_a--> GO:0044003
* Copied GO:0052038 to GO:0044068 with type OBO_REL:is_a
* Deleted GO:0052040 --OBO_REL:is_a--> GO:0044003
* Copied GO:0052040 to GO:0044068 with type OBO_REL:is_a
* Changed name of GO:0052055 from "modification by symbiont of host molecular function" to "modulation by symbiont of host molecular function"
* Added synonym "modification by symbiont of host molecular function" to GO:0052055
* Changed synonym scope of GO:0052055 from "Related" to "Exact"
* Deleted GO:0052190 --OBO_REL:is_a--> GO:0044003
* Copied GO:0052190 to GO:0044068 with type OBO_REL:is_a
* Changed definition of GO:0070176 from "A transcriptional repressor complex that contains the lin-9, lin-35, lin-37, lin-52, lin-53, lin-5is involved in 4-, dpl-1 and efl-1 proteins, and is involveed in cell fate specification." to "A transcriptional repressor complex that contains the lin-9, lin-35, lin-37, lin-52, lin-53, lin-5is involved in 4-, dpl-1 and efl-1 proteins, and is involved in cell fate specification."
* Changed definition of GO:0070227 from "The process of apopotosis in a lymphocyte." to "The process of apoptosis in a lymphocyte."
* Changed definition of GO:0070314 from "A process by which progression through the cell cycle is halted during G1 phase, whereupon the cell enters a specialized resting state known as G0 or quiescensce." to "A process by which progression through the cell cycle is halted during G1 phase, whereupon the cell enters a specialized resting state known as G0 or quiescence."
* Changed comment from "Note that this MAPKKK cascade is commonly refered to as the ERK pathway in the literature, but involves only ERK1 or ERK2, not other ERK kinases." to "Note that this MAPKKK cascade is commonly referred to as the ERK pathway in the literature, but involves only ERK1 or ERK2, not other ERK kinases."
More information about the Go-diff
mailing list