[Go-diff] GO update 02/27/2009

Fri Feb 27 21:30:48 PST 2009

OBODIFF of gene_ontology_write.obo version 1.460 by 1.461

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070456
* Created object of type obo:TERM with id GO:0070457
* Created object of type obo:TERM with id GO:0070458
* Created object of type obo:TERM with id GO:0070459
* Created object of type obo:TERM with id GO:0070460
* Populated new object GO:0070456 (macro)
  * Changed name of GO:0070456 from "<new term>" to "galactose-1-phosphate phosphatase activity"
  * Set definition of GO:0070456 to "Catalysis of the reaction: galactose-1-phosphate + H2O = galactose + phosphate."
  * Added definition dbxref GOC:mah to GO:0070456
  * Copied GO:0070456 to GO:0016791 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070456
* Populated new object GO:0070457 (macro)
  * Changed name of GO:0070457 from "<new term>" to "D-galactose-1-phosphate phosphatase activity"
  * Set definition of GO:0070457 to "Catalysis of the reaction: D-galactose-1-phosphate + H2O = D-galactose + phosphate."
  * Added definition dbxref GOC:mah to GO:0070457
  * Added definition dbxref PMID:9462881 to GO:0070457
  * Copied GO:0070457 to GO:0070456 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070457
* Populated new object GO:0070458 (macro)
  * Changed name of GO:0070458 from "<new term>" to "cellular detoxification of nitrogen compound"
  * Set definition of GO:0070458 to "Any cellular process that reduces or removes the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances."
  * Added definition dbxref GOC:mah to GO:0070458
  * Added synonym "cellular detoxification of nitrogenous compound" to GO:0070458
  * Added general dbxref GOC:mah to synonym cellular detoxification of nitrogenous compound of GO:0070458
  * Changed synonym scope of GO:0070458 from "Related" to "Exact"
  * Copied GO:0070458 to GO:0051410 with type OBO_REL:is_a
  * Copied GO:0070458 to GO:0034641 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070458
* Populated new object GO:0070459 (macro)
  * Changed name of GO:0070459 from "<new term>" to "prolactin secretion"
  * Set definition of GO:0070459 to "The regulated release of prolactin, a peptide hormone that stimulates lactation, from secretory granules in the anterior pituitary."
  * Added definition dbxref GOC:mah to GO:0070459
  * Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0070459
  * Copied GO:0070459 to GO:0030072 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070459
* Populated new object GO:0070460 (macro)
  * Changed name of GO:0070460 from "<new term>" to "thyroid-stimulating hormone secretion"
  * Set definition of GO:0070460 to "The regulated release of thyroid-stimulating hormone, a peptide hormone that stimulates the activity of the thyroid gland, from secretory granules in the anterior pituitary."
  * Added definition dbxref GOC:mah to GO:0070460
  * Added definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) to GO:0070460
  * Added synonym "thyroid stimulating hormone secretion" to GO:0070460
  * Added general dbxref GOC:mah to synonym thyroid stimulating hormone secretion of GO:0070460
  * Changed synonym scope of GO:0070460 from "Related" to "Exact"
  * Copied GO:0070460 to GO:0030072 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070460
* Added synonym "late Golgi" to GO:0000138
* Added general dbxref GOC:mah to synonym late Golgi of GO:0000138
* Changed definition of GO:0000326 from "A compound organelle of plants where there is a lytic vacuole within a storage vacuole." to "A storage vacuole that contains a lytic vacuole; identified in plants."
* Deleted GO:0000327 --OBO_REL:is_a--> GO:0000326
* Copied GO:0000327 to GO:0000326 with type part_of
* Added synonym "isolation membrane" to GO:0000407
* added secondary id GO:0004700 to GO:0004674
* Added general dbxref EC:2.7.11.- to GO:0004674
* Added synonym "atypical PKC activity" to GO:0004674
* Changed synonym scope of GO:0004674 from "Related" to "Narrow"
* Added synonym "atypical protein kinase C activity" to GO:0004674
* Changed synonym scope of GO:0004674 from "Related" to "Narrow"
* Added synonym "conventional protein kinase C activity" to GO:0004698
* Added general dbxref PMID:9601053 to synonym conventional protein kinase C activity of GO:0004698
* Changed synonym scope of GO:0004698 from "Related" to "Exact"
* Added synonym "novel protein kinase C activity" to GO:0004699
* Added general dbxref PMID:9601053 to synonym novel protein kinase C activity of GO:0004699
* Changed synonym scope of GO:0004699 from "Related" to "Exact"
* Deleted GO:0004700 --OBO_REL:is_a--> GO:0004697
* Destroyed object GO:0004700
* Changed definition of GO:0005764 from "A cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions." to "A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions."
* Added definition dbxref GOC:mah to GO:0005764
* Added synonym "late Golgi" to GO:0005802
* Added general dbxref GOC:mah to synonym late Golgi of GO:0005802
* Changed definition of GO:0010273 from "Any process that reduce or remove the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion." to "Any process that reduces or removes the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion."
* Changed definition of GO:0010282 from "Vacuole that is maintained at acidic pH and has different tonoplast composition compared to the central vacuole. Found during leaf senescence and develops in the peripheral cytoplasm of cells that contain chloroplast." to "A lytic vacuole that is maintained at acidic pH and has different tonoplast composition compared to the central vacuole. Found during leaf senescence and develops in the peripheral cytoplasm of cells that contain chloroplast."
* Copied GO:0010282 to GO:0000325 with type OBO_REL:is_a
* Changed definition of GO:0010299 from "Any process that reduce or remove the toxicity of cobalt ion. These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion." to "Any process that reduces or removes the toxicity of cobalt ion. These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion."
* Changed definition of GO:0010312 from "Any process that reduce or remove the toxicity of zinc ion. These include transport of zinc away from sensitive areas and to compartments or complexes whose purpose is sequestration of zinc ion." to "Any process that reduces or removes the toxicity of zinc ion. These include transport of zinc away from sensitive areas and to compartments or complexes whose purpose is sequestration of zinc ion."
* Deleted GO:0010347 --OBO_REL:is_a--> GO:0016791
* Copied GO:0010347 to GO:0070456 with type OBO_REL:is_a
* Changed definition of GO:0016203 from "The developmental process by which a skeletal muscle attaches to a bone." to "The developmental process by which a skeletal muscle attaches to its target (such as bone or body wall)."
* Added definition dbxref GOC:sart to GO:0016203
* Added synonym "somatotropin secretion" to GO:0030252
* Added general dbxref GOC:mah to synonym somatotropin secretion of GO:0030252
* Changed synonym scope of GO:0030252 from "Related" to "Exact"
* Deleted GO:0045298 --part_of--> GO:0005874
* Changed definition of GO:0051410 from "Any process that reduce or remove the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances." to "Any process that reduces or removes the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances."
* Changed definition of GO:0060126 from "The process whereby a relatively unspecialized cell, acquires specialized structural and/or functional features of a somatotropin secreting cell. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin." to "The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a somatotropin secreting cell. A somatotropin secreting cell is an acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin."
* Changed synonym scope of GO:0060126 from "Related" to "Exact"
* Changed definition of GO:0060127 from "The process whereby a relatively unspecialized cell, acquires specialized structural and/or functional features of a prolactin secreting cell. A prolactin secreting cell is an acidophilic cell of the anterior pituitary that produces prolactin." to "The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a prolactin secreting cell. A prolactin secreting cell is an acidophilic cell of the anterior pituitary that produces prolactin."
* Changed definition of GO:0060128 from "The process whereby a relatively unspecialized cell, acquires specialized structural and/or functional features of a adrenocorticotropic hormone secreting cell. An adrenocorticotropic hormone secreting cell is a basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin." to "The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a adrenocorticotropic hormone secreting cell. An adrenocorticotropic hormone secreting cell is a basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin."
* Changed definition of GO:0060129 from "The process whereby a relatively unspecialized cell, acquires specialized structural and/or functional features of a adrenocorticotropi hormone secreting cell. A thyroid stimulating hormone secreting cell is a basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin." to "The process whereby a relatively unspecialized cell acquires specialized structural and/or functional features of a adrenocorticotropi hormone secreting cell. A thyroid stimulating hormone secreting cell is a basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin."
* Changed synonym scope of GO:0060133 from "Related" to "Exact"