[Go-diff] GO update 01/08/2009

Thu Jan 8 21:30:48 PST 2009

OBODIFF of gene_ontology_write.obo version 1.374 by 1.376

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043962
* Created object of type obo:TERM with id GO:0043963
* Created object of type obo:TERM with id GO:0043964
* Created object of type obo:TERM with id GO:0043965
* Created object of type obo:TERM with id GO:0070220
* Created object of type obo:TERM with id GO:0070221
* Created object of type obo:TERM with id GO:0070222
* Created object of type obo:TERM with id GO:0070223
* Created object of type obo:TERM with id GO:0070224
* Created object of type obo:TERM with id GO:0070225
* Created object of type obo:TERM with id GO:0070226
* Populated new object GO:0043962 (macro)
  * Changed name of GO:0043962 from "<new term>" to "negative regulation by host of symbiont adenylate cyclase-mediated signal transduction"
  * Added comment "Note that this term is used to annotate gene products of the host. To annotate symbiont gene products, consider the biological process term "positive regulation by symbiont of host adenylate cyclase-mediated signal transduction; GO:0075336"."
  * Set definition of GO:0043962 to "Any process by which an organism stops, prevents or reduces the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction."
  * Added definition dbxref GOC:pamgo_curators to GO:0043962
  * Copied GO:0043962 to GO:0052492 with type OBO_REL:is_a
  * Copied GO:0043962 to GO:0075332 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043962
* Populated new object GO:0043963 (macro)
  * Changed name of GO:0043963 from "<new term>" to "modulation by symbiont of host adenylate cyclase-mediated signal transduction"
  * Set definition of GO:0043963 to "Any process by which the symbiont modulates the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction."
  * Added definition dbxref GOC:pamgo_curators to GO:0043963
  * Added GO:0043963 to category gosubset_prok
  * Copied GO:0043963 to GO:0052027 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043963
* Populated new object GO:0043964 (macro)
  * Changed name of GO:0043964 from "<new term>" to "positive regulation by symbiont of host adenylate cyclase-mediated signal transduction"
  * Set definition of GO:0043964 to "Any process by which an organism activates, maintains or increases the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction."
  * Added definition dbxref GOC:pamgo_curators to GO:0043964
  * Added GO:0043964 to category gosubset_prok
  * Copied GO:0043964 to GO:0043963 with type OBO_REL:is_a
  * Copied GO:0043964 to GO:0052028 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043964
* Populated new object GO:0043965 (macro)
  * Changed name of GO:0043965 from "<new term>" to "negative regulation by symbiont of host adenylate cyclase-mediated signal transduction"
  * Set definition of GO:0043965 to "Any process by which an organism stops, prevents or reduces the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction."
  * Added definition dbxref GOC:pamgo_curators to GO:0043965
  * Added GO:0043965 to category gosubset_prok
  * Copied GO:0043965 to GO:0043963 with type OBO_REL:is_a
  * Copied GO:0043965 to GO:0052029 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043965
* Populated new object GO:0070220 (macro)
  * Changed name of GO:0070220 from "<new term>" to "aerobic sulfur oxidation"
  * Set definition of GO:0070220 to "A sulfur oxidation process that proceeds via the reaction catalyzed by sulfur dioxygenase, and requires the presence of oxygen."
  * Added definition dbxref MetaCyc:SULFUROX-PWY to GO:0070220
  * Added general dbxref MetaCyc:SULFUROX-PWY to GO:0070220
  * Added GO:0070220 to category gosubset_prok
  * Added synonym "aerobic sulphur oxidation" to GO:0070220
  * Added general dbxref GOC:mah to synonym aerobic sulphur oxidation of GO:0070220
  * Changed synonym scope of GO:0070220 from "Related" to "Exact"
  * Copied GO:0070220 to GO:0019417 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070220
* Populated new object GO:0070221 (macro)
  * Changed name of GO:0070221 from "<new term>" to "sulfide oxidation, using sulfide:quinone oxidoreductase"
  * Set definition of GO:0070221 to "A sulfide oxidation process that proceeds via the reaction catalyzed by sulfide:quinone oxidoreductase."
  * Added definition dbxref MetaCyc:P222-PWY to GO:0070221
  * Added general dbxref MetaCyc:P222-PWY to GO:0070221
  * Added GO:0070221 to category gosubset_prok
  * Added synonym "sulfide oxidation, using sulfide-quinone reductase" to GO:0070221
  * Added general dbxref MetaCyc:P222-PWY to synonym sulfide oxidation, using sulfide-quinone reductase of GO:0070221
  * Added general dbxref GOC:mah to synonym sulfide oxidation, using sulfide-quinone reductase of GO:0070221
  * Changed synonym scope of GO:0070221 from "Related" to "Exact"
  * Added synonym "sulphide oxidation, using sulfide:quinone oxidoreductase" to GO:0070221
  * Added general dbxref GOC:mah to synonym sulphide oxidation, using sulfide:quinone oxidoreductase of GO:0070221
  * Changed synonym scope of GO:0070221 from "Related" to "Exact"
  * Copied GO:0070221 to GO:0019418 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070221
* Populated new object GO:0070222 (macro)
  * Changed name of GO:0070222 from "<new term>" to "sulfide oxidation, using sulfide dehydrogenase"
  * Set definition of GO:0070222 to "A sulfide oxidation process that proceeds via the reaction catalyzed by sulfide dehydrogenase."
  * Added definition dbxref MetaCyc:PWY-5274 to GO:0070222
  * Added general dbxref MetaCyc:PWY-5274 to GO:0070222
  * Added GO:0070222 to category gosubset_prok
  * Added synonym "sulphide oxidation, using sulfide dehydrogenase" to GO:0070222
  * Added general dbxref GOC:mah to synonym sulphide oxidation, using sulfide dehydrogenase of GO:0070222
  * Changed synonym scope of GO:0070222 from "Related" to "Exact"
  * Copied GO:0070222 to GO:0019418 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070222
* Populated new object GO:0070223 (macro)
  * Changed name of GO:0070223 from "<new term>" to "sulfide oxidation, using sulfur dioxygenase"
  * Set definition of GO:0070223 to "A sulfide oxidation process that proceeds via the reaction catalyzed by sulfur dioxygenase."
  * Added definition dbxref MetaCyc:PWY-5285 to GO:0070223
  * Added general dbxref MetaCyc:PWY-5285 to GO:0070223
  * Added GO:0070223 to category gosubset_prok
  * Added synonym "sulphide oxidation, using sulfur dioxygenase" to GO:0070223
  * Added general dbxref GOC:mah to synonym sulphide oxidation, using sulfur dioxygenase of GO:0070223
  * Changed synonym scope of GO:0070223 from "Related" to "Exact"
  * Copied GO:0070223 to GO:0019418 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070223
* Populated new object GO:0070224 (macro)
  * Changed name of GO:0070224 from "<new term>" to "sulfide:quinone oxidoreductase activity"
  * Set definition of GO:0070224 to "Catalysis of the reaction: hydrogen sulfide + a quinone = S0 + a hydroquinone."
  * Added definition dbxref MetaCyc:R17-RXN to GO:0070224
  * Added general dbxref EC:1.8.5.- to GO:0070224
  * Added general dbxref MetaCyc:R17-RXN to GO:0070224
  * Added GO:0070224 to category gosubset_prok
  * Added synonym "sulfide-quinone reductase activity" to GO:0070224
  * Added general dbxref MetaCyc:MONOMER-12314 to synonym sulfide-quinone reductase activity of GO:0070224
  * Changed synonym scope of GO:0070224 from "Related" to "Exact"
  * Added synonym "sulphide:quinone oxidoreductase activity" to GO:0070224
  * Added general dbxref GOC:mah to synonym sulphide:quinone oxidoreductase activity of GO:0070224
  * Changed synonym scope of GO:0070224 from "Related" to "Exact"
  * Copied GO:0070224 to GO:0016672 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070224
* Populated new object GO:0070225 (macro)
  * Changed name of GO:0070225 from "<new term>" to "sulfide dehydrogenase activity"
  * Set definition of GO:0070225 to "Catalysis of the reaction: hydrogen sulfide + oxidized cytochrome c = S0 + reduced cytochrome c"
  * Added definition dbxref MetaCyc:RXN-8156 to GO:0070225
  * Added general dbxref EC:1.8.2.- to GO:0070225
  * Added general dbxref MetaCyc:RXN-8156 to GO:0070225
  * Added GO:0070225 to category gosubset_prok
  * Added synonym "flavocytochrome c sulfide dehydrogenase activity" to GO:0070225
  * Added general dbxref MetaCyc:RXN-8156 to synonym flavocytochrome c sulfide dehydrogenase activity of GO:0070225
  * Changed synonym scope of GO:0070225 from "Related" to "Exact"
  * Added synonym "sulphide dehydrogenase activity" to GO:0070225
  * Added general dbxref GOC:mah to synonym sulphide dehydrogenase activity of GO:0070225
  * Changed synonym scope of GO:0070225 from "Related" to "Exact"
  * Copied GO:0070225 to GO:0016669 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070225
* Populated new object GO:0070226 (macro)
  * Changed name of GO:0070226 from "<new term>" to "sulfur:ferric ion oxidoreductase activity"
  * Set definition of GO:0070226 to "Catalysis of the reaction: a perthiol + 4 Fe3+ + 3 H2O <=> sulfite + a thiol + 4 Fe2+ + 8 H+."
  * Added definition dbxref MetaCyc:SULFFEOXIDO-RXN to GO:0070226
  * Added general dbxref MetaCyc:SULFFEOXIDO-RXN to GO:0070226
  * Added GO:0070226 to category gosubset_prok
  * Added synonym "hydrogen sulfide:ferric ion oxidoreductase" to GO:0070226
  * Added general dbxref MetaCyc:SULFFEOXIDO-RXN to synonym hydrogen sulfide:ferric ion oxidoreductase of GO:0070226
  * Changed synonym scope of GO:0070226 from "Related" to "Exact"
  * Added synonym "sulfur:ferric ion oxidoreductase activity" to GO:0070226
  * Added general dbxref GOC:mah to synonym sulfur:ferric ion oxidoreductase activity of GO:0070226
  * Changed synonym scope of GO:0070226 from "Related" to "Exact"
  * Copied GO:0070226 to GO:0016667 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070226
* added secondary id GO:0019378 to GO:0000103
* Added general dbxref MetaCyc:PWY-781 to GO:0000103
* Added synonym "sulfate assimilation, phosphoadenylyl sulfate reduction by an oxidoreductase, acting on sulfur group of donors, NAD or NADP as acceptor" to GO:0000103
* Changed synonym scope of GO:0000103 from "Related" to "Narrow"
* Added synonym "sulphate assimilation, phosphoadenylyl sulphate reduction by an oxidoreductase, acting on sulphur group of donors, NAD or NADP as acceptor" to GO:0000103
* Changed synonym scope of GO:0000103 from "Related" to "Narrow"
* Copied GO:0010134 to GO:0019419 with type OBO_REL:is_a
* Added synonym "siroheme sulfite reductase activity" to GO:0016002
* Added general dbxref MetaCyc:SULFITE-REDUCTASE-RXN to synonym siroheme sulfite reductase activity of GO:0016002
* Changed synonym scope of GO:0016002 from "Related" to "Narrow"
* Deleted GO:0019378 --OBO_REL:is_a--> GO:0000103
* Destroyed object GO:0019378
* Copied GO:0019379 to GO:0019419 with type OBO_REL:is_a
* Changed definition of GO:0019417 from "The addition of oxygen to elemental sulfur." to "The chemical reactions and pathways resulting the addition of oxygen to elemental sulfur."
* Added definition dbxref MetaCyc:FESULFOX-PWY to GO:0019417
* Deleted general dbxref MetaCyc:SULFUROX-PWY from GO:0019417
* Set definition of GO:0019418 to "The chemical reactions and pathways resulting the conversion of of sulfide to elemental sulfur in a higher oxidation state, or to sulfite or sulfate."
* Added definition dbxref MetaCyc:P222-PWY to GO:0019418
* Added definition dbxref MetaCyc:P223-PWY to GO:0019418
* Added definition dbxref MetaCyc:PWY-5274 to GO:0019418
* Added definition dbxref MetaCyc:PWY-5285 to GO:0019418
* added secondary id GO:0019421 to GO:0019419
* Changed definition of GO:0019419 from "The chemical reactions and pathways resulting in the reduction of sulfate to another sulfur-containing ion or compound such as hydrogen sulfide or thiosulfate." to "The chemical reactions and pathways resulting in the reduction of sulfate to another sulfur-containing ion or compound such as hydrogen sulfide, adenosine-phosphosulfate (APS)  or thiosulfate."
* Added synonym "assimilatory sulfate reduction" to GO:0019419
* Changed synonym scope of GO:0019419 from "Related" to "Narrow"
* Added synonym "assimilatory sulphate reduction" to GO:0019419
* Changed synonym scope of GO:0019419 from "Related" to "Narrow"
* Added synonym "sulfate reduction, APS pathway" to GO:0019419
* Changed synonym scope of GO:0019419 from "Related" to "Narrow"
* Added synonym "sulphate reduction, APS pathway" to GO:0019419
* Changed synonym scope of GO:0019419 from "Related" to "Narrow"
* Deleted GO:0019421 --OBO_REL:is_a--> GO:0019419
* Destroyed object GO:0019421
* Set definition of GO:0019423 to "A sulfur oxidation process that proceeds via the reaction catalyzed by sulfur:ferric ion oxidoreductase, and requires the presence of ferric ion (Fe3+)."
* Added definition dbxref MetaCyc:FESULFOX-PWY to GO:0019423
* added secondary id GO:0019425 to GO:0019424
* Set definition of GO:0019424 to "A sulfide oxidation process that proceeds via the reaction catalyzed by siroheme sulfite reductase."
* Added definition dbxref MetaCyc:P223-PWY to GO:0019424
* Added synonym "sulfur oxidation, using sirohaem sulfite reductase" to GO:0019424
* Added synonym "sulfur oxidation, using siroheme sulfite reductase" to GO:0019424
* Added synonym "sulphur oxidation, using siroheme sulphite reductase" to GO:0019424
* Deleted GO:0019425 --OBO_REL:is_a--> GO:0019417
* Destroyed object GO:0019425