[Go-diff] GO update 01/19/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Mon Jan 19 21:30:47 PST 2009 

OBODIFF of gene_ontology_write.obo version 1.395 by 1.397

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0043977
* Created object of type obo:TERM with id GO:0043978
* Created object of type obo:TERM with id GO:0043979
* Created object of type obo:TERM with id GO:0043980
* Created object of type obo:TERM with id GO:0043981
* Created object of type obo:TERM with id GO:0043982
* Created object of type obo:TERM with id GO:0043983
* Created object of type obo:TERM with id GO:0043984
* Created object of type obo:TERM with id GO:0043985
* Created object of type obo:TERM with id GO:0043986
* Created object of type obo:TERM with id GO:0043987
* Created object of type obo:TERM with id GO:0043988
* Created object of type obo:TERM with id GO:0043989
* Created object of type obo:TERM with id GO:0043990
* Created object of type obo:TERM with id GO:0043991
* Populated new object GO:0043977 (macro)
  * Changed name of GO:0043977 from "<new term>" to "histone H2A-K5 acetylation"
  * Set definition of GO:0043977 to "The modification of histone H2A by the addition of an acetyl group to a lysine residue at position 5 of the histone."
  * Added definition dbxref GOC:jl to GO:0043977
  * Added synonym "histone H2A acetylation at K5" to GO:0043977
  * Changed synonym scope of GO:0043977 from "Related" to "Exact"
  * Copied GO:0043977 to GO:0043968 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043977
* Populated new object GO:0043978 (macro)
  * Changed name of GO:0043978 from "<new term>" to "histone H2A-K9 acetylation"
  * Set definition of GO:0043978 to "The modification of histone H2A by the addition of an acetyl group to a lysine residue at position 9 of the histone."
  * Added definition dbxref GOC:jl to GO:0043978
  * Added synonym "histone H2A acetylation at K9" to GO:0043978
  * Changed synonym scope of GO:0043978 from "Related" to "Exact"
  * Copied GO:0043978 to GO:0043968 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043978
* Populated new object GO:0043979 (macro)
  * Changed name of GO:0043979 from "<new term>" to "histone H2B-K5 acetylation"
  * Set definition of GO:0043979 to "The modification of histone H2B by the addition of an acetyl group to a lysine residue at position 5 of the histone."
  * Added definition dbxref GOC:jl to GO:0043979
  * Added synonym "histone H2B acetylation at K5" to GO:0043979
  * Changed synonym scope of GO:0043979 from "Related" to "Exact"
  * Copied GO:0043979 to GO:0043969 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043979
* Populated new object GO:0043980 (macro)
  * Changed name of GO:0043980 from "<new term>" to "histone H2B-K12 acetylation"
  * Set definition of GO:0043980 to "The modification of histone H2B by the addition of an acetyl group to a lysine residue at position 12 of the histone."
  * Added definition dbxref GOC:jl to GO:0043980
  * Added synonym "histone H2B acetylation at K12" to GO:0043980
  * Changed synonym scope of GO:0043980 from "Related" to "Exact"
  * Copied GO:0043980 to GO:0043969 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043980
* Populated new object GO:0043981 (macro)
  * Changed name of GO:0043981 from "<new term>" to "histone H4-K5 acetylation"
  * Set definition of GO:0043981 to "The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 5 of the histone."
  * Added definition dbxref GOC:jl to GO:0043981
  * Added synonym "histone H4 acetylation at K5" to GO:0043981
  * Changed synonym scope of GO:0043981 from "Related" to "Exact"
  * Copied GO:0043981 to GO:0043967 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043981
* Populated new object GO:0043982 (macro)
  * Changed name of GO:0043982 from "<new term>" to "histone H4-K8 acetylation"
  * Set definition of GO:0043982 to "The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 8 of the histone."
  * Added definition dbxref GOC:jl to GO:0043982
  * Added synonym "histone H4 acetylation at K8" to GO:0043982
  * Changed synonym scope of GO:0043982 from "Related" to "Exact"
  * Copied GO:0043982 to GO:0043967 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043982
* Populated new object GO:0043983 (macro)
  * Changed name of GO:0043983 from "<new term>" to "histone H4-K12 acetylation"
  * Set definition of GO:0043983 to "The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 12 of the histone."
  * Added definition dbxref GOC:jl to GO:0043983
  * Added synonym "histone H4 acetylation at K12" to GO:0043983
  * Changed synonym scope of GO:0043983 from "Related" to "Exact"
  * Copied GO:0043983 to GO:0043967 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043983
* Populated new object GO:0043984 (macro)
  * Changed name of GO:0043984 from "<new term>" to "histone H4-K16 acetylation"
  * Set definition of GO:0043984 to "The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 16 of the histone."
  * Added definition dbxref GOC:jl to GO:0043984
  * Added synonym "histone H4 acetylation at K16" to GO:0043984
  * Changed synonym scope of GO:0043984 from "Related" to "Exact"
  * Copied GO:0043984 to GO:0043967 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043984
* Populated new object GO:0043985 (macro)
  * Changed name of GO:0043985 from "<new term>" to "histone H4-R3 methylation"
  * Set definition of GO:0043985 to "The modification of histone H4 by addition of a methyl group to arginine at position 3 of the histone."
  * Added definition dbxref GOC:mah to GO:0043985
  * Added synonym "histone H4 methylation at R3" to GO:0043985
  * Changed synonym scope of GO:0043985 from "Related" to "Exact"
  * Added synonym "histone H4 R3 methylation" to GO:0043985
  * Changed synonym scope of GO:0043985 from "Related" to "Exact"
  * Added synonym "histone H4R3me" to GO:0043985
  * Changed synonym scope of GO:0043985 from "Related" to "Exact"
  * Copied GO:0043985 to GO:0034969 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043985
* Populated new object GO:0043986 (macro)
  * Changed name of GO:0043986 from "<new term>" to "histone H3-S3 phosphorylation"
  * Set definition of GO:0043986 to "The modification of histone H3 by the addition of an phosphate group to a serine residue at position 3 of the histone."
  * Added definition dbxref GOC:jl to GO:0043986
  * Added synonym "histone H3 phosphorylation at S3" to GO:0043986
  * Changed synonym scope of GO:0043986 from "Related" to "Exact"
  * Added synonym "histone H3S3 phosphorylation" to GO:0043986
  * Changed synonym scope of GO:0043986 from "Related" to "Exact"
  * Copied GO:0043986 to GO:0016572 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043986
* Populated new object GO:0043987 (macro)
  * Changed name of GO:0043987 from "<new term>" to "histone H3-S10 phosphorylation"
  * Set definition of GO:0043987 to "The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone."
  * Added definition dbxref GOC:jl to GO:0043987
  * Added synonym "histone H3 phosphorylation at S10" to GO:0043987
  * Changed synonym scope of GO:0043987 from "Related" to "Exact"
  * Added synonym "histone H3S10 phosphorylation" to GO:0043987
  * Changed synonym scope of GO:0043987 from "Related" to "Exact"
  * Copied GO:0043987 to GO:0016572 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043987
* Populated new object GO:0043988 (macro)
  * Changed name of GO:0043988 from "<new term>" to "histone H3-S28 phosphorylation"
  * Set definition of GO:0043988 to "The modification of histone H3 by the addition of an phosphate group to a serine residue at position 28 of the histone."
  * Added definition dbxref GOC:jl to GO:0043988
  * Added synonym "histone H3 phosphorylation at S28" to GO:0043988
  * Changed synonym scope of GO:0043988 from "Related" to "Exact"
  * Added synonym "histone H3S28 phosphorylation" to GO:0043988
  * Changed synonym scope of GO:0043988 from "Related" to "Exact"
  * Copied GO:0043988 to GO:0016572 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043988
* Populated new object GO:0043989 (macro)
  * Changed name of GO:0043989 from "<new term>" to "histone H4-S1 phosphorylation"
  * Set definition of GO:0043989 to "The modification of histone H4 by the addition of an phosphate group to a serine residue at position 1 of the histone."
  * Added definition dbxref GOC:jl to GO:0043989
  * Added synonym "histone H4 phosphorylation at S1" to GO:0043989
  * Changed synonym scope of GO:0043989 from "Related" to "Exact"
  * Added synonym "histone H4S1 phosphorylation" to GO:0043989
  * Changed synonym scope of GO:0043989 from "Related" to "Exact"
  * Copied GO:0043989 to GO:0016572 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043989
* Populated new object GO:0043990 (macro)
  * Changed name of GO:0043990 from "<new term>" to "histone H2A-S1 phosphorylation"
  * Set definition of GO:0043990 to "The modification of histone H2A by the addition of an phosphate group to a serine residue at position 1 of the histone."
  * Added definition dbxref GOC:jl to GO:0043990
  * Added synonym "histone H2A phosphorylation at S1" to GO:0043990
  * Changed synonym scope of GO:0043990 from "Related" to "Exact"
  * Added synonym "histone H2AS1 phosphorylation" to GO:0043990
  * Changed synonym scope of GO:0043990 from "Related" to "Exact"
  * Copied GO:0043990 to GO:0016572 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043990
* Populated new object GO:0043991 (macro)
  * Changed name of GO:0043991 from "<new term>" to "histone H2B-S14 phosphorylation"
  * Set definition of GO:0043991 to "The modification of histone H2B by the addition of an phosphate group to a serine residue at position 14 of the histone."
  * Added definition dbxref GOC:jl to GO:0043991
  * Added synonym "histone H2B phosphorylation at S14" to GO:0043991
  * Changed synonym scope of GO:0043991 from "Related" to "Exact"
  * Added synonym "histone H2BS14 phosphorylation" to GO:0043991
  * Changed synonym scope of GO:0043991 from "Related" to "Exact"
  * Copied GO:0043991 to GO:0016572 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0043991
* Deleted GO:0043946 --OBO_REL:is_a--> GO:0043086
* Deleted GO:0043946 --OBO_REL:is_a--> GO:0052204
* Copied GO:0043946 to GO:0043085 with type OBO_REL:is_a
* Changed name of GO:0043947 from "positive regulation by host of symbiont enzyme activity" to "positive regulation by host of symbiont catalytic activity"
* Added synonym "positive regulation by host of symbiont enzyme activity" to GO:0043947
* Changed synonym scope of GO:0043947 from "Related" to "Exact"
* Changed name of GO:0043948 from "positive regulation by symbiont of host enzyme activity" to "positive regulation by symbiont of host catalytic activity"
* Added synonym "positive regulation by symbiont of host enzyme activity" to GO:0043948
* Changed synonym scope of GO:0043948 from "Related" to "Exact"
* Deleted GO:0051671 --OBO_REL:is_a--> GO:0043085
* Changed name of GO:0052053 from "negative regulation by symbiont of host enzyme activity" to "negative regulation by symbiont of host catalytic activity"
* Added synonym "negative regulation by symbiont of host enzyme activity" to GO:0052053
* Changed synonym scope of GO:0052053 from "Related" to "Exact"
* Changed name of GO:0052148 from "modification by symbiont of host catalytic activity" to "modulation by symbiont of host catalytic activity"
* Deleted synonym "modification by symbiont of host enzyme activity" from GO:0052148
* Deleted synonym "modification of catalytic activity of host by symbiont" from GO:0052148
* Added synonym "modulation by symbiont of host enzyme activity" to GO:0052148
* Added general dbxref GOC:tb to synonym modulation by symbiont of host enzyme activity of GO:0052148
* Changed synonym scope of GO:0052148 from "Related" to "Exact"
* Added synonym "modulation of catalytic activity of host by symbiont" to GO:0052148
* Changed synonym scope of GO:0052148 from "Related" to "Exact"
* Changed name of GO:0052149 from "modification by symbiont of host protease activity" to "modulation by symbiont of host protease activity"
* Changed name of GO:0052198 from "modification of protease activity in other organism during symbiotic interaction" to "modulation of protease activity in other organism during symbiotic interaction"
* Changed name of GO:0052203 from "modification of catalytic activity in other organism during symbiotic interaction" to "modulation of catalytic activity in other organism during symbiotic interaction"
* Deleted synonym "modification of enzyme activity in other organism during symbiotic interaction" from GO:0052203
* Added synonym "modulation of enzyme activity in other organism during symbiotic interaction" to GO:0052203
* Added general dbxref GOC:tb to synonym modulation of enzyme activity in other organism during symbiotic interaction of GO:0052203
* Changed synonym scope of GO:0052203 from "Related" to "Exact"
* Changed name of GO:0052205 from "modification of molecular function in other organism during symbiotic interaction" to "modulation of molecular function in other organism during symbiotic interaction"
* Added synonym "modification of molecular function in other organism during symbiotic interaction" to GO:0052205
* Changed synonym scope of GO:0052205 from "Related" to "Exact"
* Changed name of GO:0052403 from "negative regulation by host of symbiont enzyme activity" to "negative regulation by host of symbiont catalytic activity"
* Added synonym "negative regulation by host of symbiont enzyme activity" to GO:0052403
* Changed synonym scope of GO:0052403 from "Related" to "Exact"
* Changed name of GO:0052422 from "modification by host of symbiont catalytic activity" to "modulation by host of symbiont catalytic activity"
* Deleted synonym "modification by host of symbiont enzyme activity" from GO:0052422
* Added synonym "modulation by host of symbiont enzyme activity" to GO:0052422
* Added general dbxref GOC:tb to synonym modulation by host of symbiont enzyme activity of GO:0052422
* Changed synonym scope of GO:0052422 from "Related" to "Exact"
* Changed name of GO:0052427 from "modification by host of symbiont protease activity" to "modulation by host of symbiont protease activity"
* Deleted GO:0075332 --OBO_REL:is_a--> GO:0075075

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