[Go-diff] GO update 01/20/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Tue Jan 20 21:30:47 PST 2009 

OBODIFF of gene_ontology_write.obo version 1.397 by 1.400

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010865
* Created object of type obo:TERM with id GO:0043992
* Created object of type obo:TERM with id GO:0043993
* Created object of type obo:TERM with id GO:0043994
* Created object of type obo:TERM with id GO:0043995
* Created object of type obo:TERM with id GO:0043996
* Created object of type obo:TERM with id GO:0043997
* Created object of type obo:TERM with id GO:0043998
* Created object of type obo:TERM with id GO:0043999
* Created object of type obo:TERM with id GO:0044012
* Created object of type obo:TERM with id GO:0044013
* Created object of type obo:TERM with id GO:0044014
* Created object of type obo:TERM with id GO:0044015
* Created object of type obo:TERM with id GO:0044016
* Created object of type obo:TERM with id GO:0044017
* Created object of type obo:TERM with id GO:0044018
* Created object of type obo:TERM with id GO:0044019
* Created object of type obo:TERM with id GO:0044020
* Created object of type obo:TERM with id GO:0044021
* Created object of type obo:TERM with id GO:0044022
* Created object of type obo:TERM with id GO:0044023
* Created object of type obo:TERM with id GO:0044024
* Created object of type obo:TERM with id GO:0044025
* Created object of type obo:TERM with id GO:0070262
* Populated new object GO:0010865 (macro)
  * Changed name of GO:0010865 from "<new term>" to "stipule development"
  * Set definition of GO:0010865 to "The process whose specific outcome is the progression of the stipule over time, from its formation to the mature structure. A stipule is one of (usually) a pair of appendages at the bases of leaves in many broad-leaved angiosperms."
  * Added definition dbxref GOC:tb to GO:0010865
  * Copied GO:0010865 to GO:0048366 with type part_of
  * Copied GO:0010865 to GO:0048856 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010865
* Populated new object GO:0043992 (macro)
  * Changed name of GO:0043992 from "<new term>" to "histone acetyltransferase activity (H3-K9 specific)"
  * Set definition of GO:0043992 to "Catalysis of the addition of an acetyl group onto lysine at position 9 of the histone H3 protein."
  * Added definition dbxref GOC:jl to GO:0043992
  * Added synonym "histone lysine N-acetyltransferase activity (H3-K9 specific)" to GO:0043992
  * Changed synonym scope of GO:0043992 from "Related" to "Exact"
  * Copied GO:0043992 to GO:0010484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043992
* Populated new object GO:0043993 (macro)
  * Changed name of GO:0043993 from "<new term>" to "histone acetyltransferase activity (H3-K18 specific)"
  * Set definition of GO:0043993 to "Catalysis of the addition of an acetyl group to lysine at position 18 of the histone H3."
  * Added definition dbxref GOC:jl to GO:0043993
  * Added synonym "histone lysine N-acetyltransferase activity (H3-K18 specific)" to GO:0043993
  * Changed synonym scope of GO:0043993 from "Related" to "Exact"
  * Copied GO:0043993 to GO:0010484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043993
* Populated new object GO:0043994 (macro)
  * Changed name of GO:0043994 from "<new term>" to "histone acetyltransferase activity (H3-K23 specific)"
  * Set definition of GO:0043994 to "Catalysis of the addition of an acetyl group onto lysine at position 23 of the histone H3 protein."
  * Added definition dbxref GOC:jl to GO:0043994
  * Added synonym "histone lysine N-acetyltransferase activity (H3-K23 specific)" to GO:0043994
  * Changed synonym scope of GO:0043994 from "Related" to "Exact"
  * Copied GO:0043994 to GO:0010484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043994
* Populated new object GO:0043995 (macro)
  * Changed name of GO:0043995 from "<new term>" to "histone acetyltransferase activity (H4-K5 specific)"
  * Set definition of GO:0043995 to "Catalysis of the addition of an acetyl group onto lysine at position 5 of the histone H4 protein."
  * Added definition dbxref GOC:jl to GO:0043995
  * Added synonym "histone lysine N-acetyltransferase activity (H4-K5 specific)" to GO:0043995
  * Changed synonym scope of GO:0043995 from "Related" to "Exact"
  * Copied GO:0043995 to GO:0010485 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043995
* Populated new object GO:0043996 (macro)
  * Changed name of GO:0043996 from "<new term>" to "histone acetyltransferase activity (H4-K8 specific)"
  * Set definition of GO:0043996 to "Catalysis of the addition of an acetyl group onto lysine at position 8 of the histone H4 protein."
  * Added definition dbxref GOC:jl to GO:0043996
  * Added synonym "histone lysine N-acetyltransferase activity (H4-K8 specific)" to GO:0043996
  * Changed synonym scope of GO:0043996 from "Related" to "Exact"
  * Copied GO:0043996 to GO:0010485 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043996
* Populated new object GO:0043997 (macro)
  * Changed name of GO:0043997 from "<new term>" to "histone acetyltransferase activity (H4-K12 specific)"
  * Set definition of GO:0043997 to "Catalysis of the addition of an acetyl group onto lysine at position 12 of the histone H4 protein."
  * Added definition dbxref GOC:jl to GO:0043997
  * Added synonym "histone lysine N-acetyltransferase activity (H4-K12 specific)" to GO:0043997
  * Changed synonym scope of GO:0043997 from "Related" to "Exact"
  * Copied GO:0043997 to GO:0010485 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043997
* Populated new object GO:0043998 (macro)
  * Changed name of GO:0043998 from "<new term>" to "H2A histone acetyltransferase activity"
  * Set definition of GO:0043998 to "Catalysis of the addition of an acetyl group to a lysine of the histone H2A."
  * Added definition dbxref GOC:jl to GO:0043998
  * Added synonym "H2A histone lysine N-acetyltransferase activity" to GO:0043998
  * Changed synonym scope of GO:0043998 from "Related" to "Exact"
  * Copied GO:0043998 to GO:0004402 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043998
* Populated new object GO:0043999 (macro)
  * Changed name of GO:0043999 from "<new term>" to "histone acetyltransferase activity (H2A-K5 specific)"
  * Set definition of GO:0043999 to "Catalysis of the addition of an acetyl group to lysine at position 5 of the histone H2A."
  * Added definition dbxref GOC:jl to GO:0043999
  * Added synonym "histone lysine N-acetyltransferase activity (H2A-K5 specific)" to GO:0043999
  * Changed synonym scope of GO:0043999 from "Related" to "Exact"
  * Copied GO:0043999 to GO:0043998 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0043999
* Populated new object GO:0044012 (macro)
  * Changed name of GO:0044012 from "<new term>" to "histone acetyltransferase activity (H2A-K9 specific)"
  * Set definition of GO:0044012 to "Catalysis of the addition of an acetyl group to lysine at position 9 of the histone H2A."
  * Added definition dbxref GOC:jl to GO:0044012
  * Added synonym "histone lysine N-acetyltransferase activity (H2A-K9 specific)" to GO:0044012
  * Changed synonym scope of GO:0044012 from "Related" to "Exact"
  * Copied GO:0044012 to GO:0043998 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044012
* Populated new object GO:0044013 (macro)
  * Changed name of GO:0044013 from "<new term>" to "H2B histone acetyltransferase activity"
  * Set definition of GO:0044013 to "Catalysis of the addition of an acetyl group to a lysine of the histone H2B."
  * Added definition dbxref GOC:jl to GO:0044013
  * Added synonym "H2B histone lysine N-acetyltransferase activity" to GO:0044013
  * Changed synonym scope of GO:0044013 from "Related" to "Exact"
  * Copied GO:0044013 to GO:0004402 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044013
* Populated new object GO:0044014 (macro)
  * Changed name of GO:0044014 from "<new term>" to "histone acetyltransferase activity (H2B-K5 specific)"
  * Set definition of GO:0044014 to "Catalysis of the addition of an acetyl group to lysine at position 5 of the histone H2B."
  * Added definition dbxref GOC:jl to GO:0044014
  * Added synonym "histone lysine N-acetyltransferase activity (H2B-K5 specific)" to GO:0044014
  * Changed synonym scope of GO:0044014 from "Related" to "Exact"
  * Copied GO:0044014 to GO:0044013 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044014
* Populated new object GO:0044015 (macro)
  * Changed name of GO:0044015 from "<new term>" to "histone acetyltransferase activity (H2B-K12 specific)"
  * Set definition of GO:0044015 to "Catalysis of the addition of an acetyl group to lysine at position 12 of the histone H2B."
  * Added definition dbxref GOC:jl to GO:0044015
  * Added synonym "histone lysine N-acetyltransferase activity (H2B-K12 specific)" to GO:0044015
  * Changed synonym scope of GO:0044015 from "Related" to "Exact"
  * Copied GO:0044015 to GO:0044013 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044015
* Populated new object GO:0044016 (macro)
  * Changed name of GO:0044016 from "<new term>" to "histone acetyltransferase activity (H3-K4 specific)"
  * Set definition of GO:0044016 to "Catalysis of the addition of an acetyl group to lysine at position 4 of the histone H3."
  * Added definition dbxref GOC:jl to GO:0044016
  * Added synonym "histone lysine N-acetyltransferase activity (H3-K4 specific)" to GO:0044016
  * Changed synonym scope of GO:0044016 from "Related" to "Exact"
  * Copied GO:0044016 to GO:0010484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044016
* Populated new object GO:0044017 (macro)
  * Changed name of GO:0044017 from "<new term>" to "histone acetyltransferase activity (H3-K27 specific)"
  * Set definition of GO:0044017 to "Catalysis of the addition of an acetyl group to lysine at position 27 of the histone H3."
  * Added definition dbxref GOC:jl to GO:0044017
  * Added synonym "histone lysine N-acetyltransferase activity (H3-K27 specific)" to GO:0044017
  * Changed synonym scope of GO:0044017 from "Related" to "Exact"
  * Copied GO:0044017 to GO:0010484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044017
* Populated new object GO:0044018 (macro)
  * Changed name of GO:0044018 from "<new term>" to "histone acetyltransferase activity (H3-K36 specific)"
  * Set definition of GO:0044018 to "Catalysis of the addition of an acetyl group to lysine at position 36 of the histone H3."
  * Added definition dbxref GOC:jl to GO:0044018
  * Added synonym "histone lysine N-acetyltransferase activity (H3-K36 specific)" to GO:0044018
  * Changed synonym scope of GO:0044018 from "Related" to "Exact"
  * Copied GO:0044018 to GO:0010484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044018
* Populated new object GO:0044019 (macro)
  * Changed name of GO:0044019 from "<new term>" to "histone acetyltransferase activity (H3-K72 specific)"
  * Set definition of GO:0044019 to "Catalysis of the addition of an acetyl group onto lysine at position 72 of the histone H3 protein."
  * Added definition dbxref GOC:mah to GO:0044019
  * Added synonym "histone lysine N-acetyltransferase activity (H3-K72 specific)" to GO:0044019
  * Changed synonym scope of GO:0044019 from "Related" to "Exact"
  * Copied GO:0044019 to GO:0010484 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044019
* Populated new object GO:0044020 (macro)
  * Changed name of GO:0044020 from "<new term>" to "histone methyltransferase activity (H4-R3 specific)"
  * Set definition of GO:0044020 to "Catalysis of the addition of a methyl group to arginine at position 3 of the histone H4."
  * Added definition dbxref GOC:jl to GO:0044020
  * Added synonym "histone-arginine N-methyltransferase activity (H4-R3 specific)" to GO:0044020
  * Changed synonym scope of GO:0044020 from "Related" to "Exact"
  * Copied GO:0044020 to GO:0008469 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044020
* Populated new object GO:0044021 (macro)
  * Changed name of GO:0044021 from "<new term>" to "histone kinase activity (H3-S3 specific)"
  * Set definition of GO:0044021 to "Catalysis of the transfer of a phosphate group to the serine-3 residue of the N-terminal tail of histone H3."
  * Added definition dbxref GOC:jl to GO:0044021
  * Added synonym "histone serine kinase activity (H3-S3 specific)" to GO:0044021
  * Changed synonym scope of GO:0044021 from "Related" to "Exact"
  * Added synonym "histone-serine kinase activity (H3-S3 specific)" to GO:0044021
  * Changed synonym scope of GO:0044021 from "Related" to "Exact"
  * Copied GO:0044021 to GO:0035174 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044021
* Populated new object GO:0044022 (macro)
  * Changed name of GO:0044022 from "<new term>" to "histone kinase activity (H3-S28 specific)"
  * Set definition of GO:0044022 to "Catalysis of the transfer of a phosphate group to the serine-28 residue of the N-terminal tail of histone H3."
  * Added definition dbxref GOC:jl to GO:0044022
  * Added synonym "histone serine kinase activity (H3-S28 specific)" to GO:0044022
  * Changed synonym scope of GO:0044022 from "Related" to "Exact"
  * Added synonym "histone-serine kinase activity (H3-S28 specific)" to GO:0044022
  * Changed synonym scope of GO:0044022 from "Related" to "Exact"
  * Copied GO:0044022 to GO:0035174 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044022
* Populated new object GO:0044023 (macro)
  * Changed name of GO:0044023 from "<new term>" to "histone kinase activity (H4-S1 specific)"
  * Set definition of GO:0044023 to "Catalysis of the transfer of a phosphate group to the serine-1 residue of the N-terminal tail of histone H4."
  * Added definition dbxref GOC:jl to GO:0044023
  * Added synonym "histone serine kinase activity (H4-S1 specific)" to GO:0044023
  * Changed synonym scope of GO:0044023 from "Related" to "Exact"
  * Added synonym "histone-serine kinase activity (H4-S1 specific)" to GO:0044023
  * Changed synonym scope of GO:0044023 from "Related" to "Exact"
  * Copied GO:0044023 to GO:0035174 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044023
* Populated new object GO:0044024 (macro)
  * Changed name of GO:0044024 from "<new term>" to "histone kinase activity (H2A-S1 specific)"
  * Set definition of GO:0044024 to "Catalysis of the transfer of a phosphate group to the serine-1 residue of the N-terminal tail of histone H2A."
  * Added definition dbxref GOC:jl to GO:0044024
  * Added synonym "histone serine kinase activity (H2A-S1 specific)" to GO:0044024
  * Changed synonym scope of GO:0044024 from "Related" to "Exact"
  * Added synonym "histone-serine kinase activity (H2A-S1 specific)" to GO:0044024
  * Changed synonym scope of GO:0044024 from "Related" to "Exact"
  * Copied GO:0044024 to GO:0035174 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044024
* Populated new object GO:0044025 (macro)
  * Changed name of GO:0044025 from "<new term>" to "histone kinase activity (H2B-S14 specific)"
  * Set definition of GO:0044025 to "Catalysis of the transfer of a phosphate group to the serine-14 residue of the N-terminal tail of histone H2B."
  * Added definition dbxref GOC:jl to GO:0044025
  * Added synonym "histone serine kinase activity (H2B-S14 specific)" to GO:0044025
  * Changed synonym scope of GO:0044025 from "Related" to "Exact"
  * Added synonym "histone-serine kinase activity (H2B-S14 specific)" to GO:0044025
  * Changed synonym scope of GO:0044025 from "Related" to "Exact"
  * Copied GO:0044025 to GO:0035174 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0044025
* Populated new object GO:0070262 (macro)
  * Changed name of GO:0070262 from "<new term>" to "peptidyl-serine dephosphorylation"
  * Set definition of GO:0070262 to "The removal of phosphoric residues from peptidyl-O-phospho-L-serine to form peptidyl-serine."
  * Added definition dbxref GOC:bf to GO:0070262
  * Copied GO:0070262 to GO:0006470 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070262
* Copied GO:0000226 to GO:0007010 with type OBO_REL:is_a
* Added synonym "histone methyltransferase activity" to GO:0008469
* Changed synonym scope of GO:0008469 from "Related" to "Broad"
* Deleted GO:0010484 --OBO_REL:is_a--> GO:0004406
* Copied GO:0010484 to GO:0004402 with type OBO_REL:is_a
* Deleted GO:0010485 --OBO_REL:is_a--> GO:0004406
* Copied GO:0010485 to GO:0004402 with type OBO_REL:is_a
* Changed definition of GO:0022613 from "The cellular process by which a complex containing RNA and proteins, is synthesized, aggregates, and bonds together." to "The cellular process by which a complex containing RNA and proteins is synthesized, aggregates, and bonds together."
* Copied GO:0030036 to GO:0007010 with type OBO_REL:is_a
* Changed name of GO:0031151 from "histone lysine N-methyltransferase activity (H3-K79 specific)" to "histone methyltransferase activity (H3-K79 specific)"
* Added synonym "histone lysine N-methyltransferase activity (H3-K79 specific)" to GO:0031151
* Changed synonym scope of GO:0031151 from "Related" to "Exact"
* Changed name of GO:0032931 from "histone lysine N-acetyltransferase activity (H3-K56 specific)" to "histone acetyltransferase activity (H3-K56 specific)"
* Added synonym "histone lysine N-acetyltransferase activity (H3-K56 specific)" to GO:0032931
* Changed synonym scope of GO:0032931 from "Related" to "Exact"
* Deleted GO:0032931 --OBO_REL:is_a--> GO:0004406
* Copied GO:0032931 to GO:0010484 with type OBO_REL:is_a
* Changed name of GO:0035175 from "histone serine kinase activity (H3-S10 specific)" to "histone kinase activity (H3-S10 specific)"
* Added synonym "histone serine kinase activity (H3-S10 specific)" to GO:0035175
* Changed synonym scope of GO:0035175 from "Related" to "Exact"
* Changed name of GO:0042799 from "histone lysine N-methyltransferase activity (H4-K20 specific)" to "histone methyltransferase activity (H4-K20 specific)"
* Added synonym "histone lysine N-methyltransferase activity (H4-K20 specific)" to GO:0042799
* Changed synonym scope of GO:0042799 from "Related" to "Exact"
* Changed name of GO:0042800 from "histone lysine N-methyltransferase activity (H3-K4 specific)" to "histone methyltransferase activity (H3-K4 specific)"
* Added synonym "histone lysine N-methyltransferase activity (H3-K4 specific)" to GO:0042800
* Changed synonym scope of GO:0042800 from "Related" to "Exact"
* Changed name of GO:0043166 from "H4/H2A histone acetyltransferase activity" to "H4/H2 histone acetyltransferase activity"
* Copied GO:0045104 to GO:0007010 with type OBO_REL:is_a
* Deleted GO:0046972 --OBO_REL:is_a--> GO:0004402
* Copied GO:0046972 to GO:0010485 with type OBO_REL:is_a
* Changed name of GO:0046974 from "histone lysine N-methyltransferase activity (H3-K9 specific)" to "histone methyltransferase activity (H3-K9 specific)"
* Added synonym "histone lysine N-methyltransferase activity (H3-K9 specific)" to GO:0046974
* Changed synonym scope of GO:0046974 from "Related" to "Exact"
* Changed name of GO:0046975 from "histone lysine N-methyltransferase activity (H3-K36 specific)" to "histone methyltransferase activity (H3-K36 specific)"
* Added synonym "histone lysine N-methyltransferase activity (H3-K36 specific)" to GO:0046975
* Changed synonym scope of GO:0046975 from "Related" to "Exact"
* Changed name of GO:0046976 from "histone lysine N-methyltransferase activity (H3-K27 specific)" to "histone methyltransferase activity (H3-K27 specific)"
* Added synonym "histone lysine N-methyltransferase activity (H3-K27 specific)" to GO:0046976
* Changed synonym scope of GO:0046976 from "Related" to "Exact"

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