[Go-diff] GO update 01/22/2009
Remote CVS for Gene Ontology
gocvs at genome.stanford.edu
Thu Jan 22 21:30:47 PST 2009
OBODIFF of gene_ontology_write.obo version 1.406 by 1.410
Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0080030
* Created object of type obo:TERM with id GO:0080031
* Created object of type obo:TERM with id GO:0080032
* Created object of type obo:TERM with id GO:0080033
* Created object of type obo:TERM with id GO:0080034
* Created object of type obo:TERM with id GO:0080035
* Created object of type obo:TERM with id GO:0080036
* Created object of type obo:TERM with id GO:0080037
* Created object of type obo:TERM with id GO:0080038
* Populated new object GO:0080030 (macro)
* Changed name of GO:0080030 from "<new term>" to "methyl indole-3-acetate esterase activity"
* Set definition of GO:0080030 to "Catalysis of the reaction methyl indole-3-acetate (MeIAA) + H2O = indole-3-acetate (IAA)+ methanol."
* Added definition dbxref PMID:18467465 to GO:0080030
* Added synonym "indole-3-Acetic acid methyl ester esterase activity" to GO:0080030
* Changed synonym scope of GO:0080030 from "Related" to "Exact"
* Added synonym "MeIAA esterase activity" to GO:0080030
* Changed synonym scope of GO:0080030 from "Related" to "Exact"
* Added synonym "Methyl IAA esterase activity" to GO:0080030
* Changed synonym scope of GO:0080030 from "Related" to "Exact"
* Added synonym "methyl indole-3-acetate esterase activity" to GO:0080030
* Copied GO:0080030 to GO:0004091 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080030
* Populated new object GO:0080031 (macro)
* Changed name of GO:0080031 from "<new term>" to "methyl salicylate esterase activity"
* Set definition of GO:0080031 to "Catalysis of the reaction methyl salicylate (MeSA) + H2O = salicylic acid (SA)+ methanol."
* Added definition dbxref PMID:18467465 to GO:0080031
* Added definition dbxref PMID:18643994 to GO:0080031
* Added synonym "MESA esterase activity" to GO:0080031
* Changed synonym scope of GO:0080031 from "Related" to "Exact"
* Added synonym "methyl SA esterase activity" to GO:0080031
* Changed synonym scope of GO:0080031 from "Related" to "Exact"
* Added synonym "methylsalicylate esterase activity" to GO:0080031
* Changed synonym scope of GO:0080031 from "Related" to "Exact"
* Added synonym "salicylic acid methyl ester esterase activity" to GO:0080031
* Changed synonym scope of GO:0080031 from "Related" to "Exact"
* Copied GO:0080031 to GO:0004091 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080031
* Populated new object GO:0080032 (macro)
* Changed name of GO:0080032 from "<new term>" to "methyl jasmonate esterase activity"
* Set definition of GO:0080032 to "Catalysis of the reaction methyl jasmonate (MeJA) + H2O = jasmonate (JA)+ methanol."
* Added definition dbxref PMID:15233793 to GO:0080032
* Added definition dbxref PMID:18467465 to GO:0080032
* Added synonym "jasmonic acid methyl ester esterase activity" to GO:0080032
* Changed synonym scope of GO:0080032 from "Related" to "Exact"
* Added synonym "MEJA esterase activity" to GO:0080032
* Changed synonym scope of GO:0080032 from "Related" to "Exact"
* Added synonym "methyl JA esterase activity" to GO:0080032
* Changed synonym scope of GO:0080032 from "Related" to "Exact"
* Copied GO:0080032 to GO:0004091 with type OBO_REL:is_a
* Assigned namespace "molecular_function" to GO:0080032
* Populated new object GO:0080033 (macro)
* Changed name of GO:0080033 from "<new term>" to "response to nitrite"
* Set definition of GO:0080033 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus."
* Added definition dbxref GOC:DL to GO:0080033
* Added definition dbxref PMID:17951451 to GO:0080033
* Copied GO:0080033 to GO:0010035 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0080033
* Populated new object GO:0080034 (macro)
* Changed name of GO:0080034 from "<new term>" to "host response to induction by symbiont of tumor, nodule or growth in host"
* Set definition of GO:0080034 to "A change in the state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the formation of an abnormal mass of cells in the host organism, induced by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction."
* Added definition dbxref PMID:18836040 to GO:0080034
* Copied GO:0080034 to GO:0009608 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0080034
* Populated new object GO:0080035 (macro)
* Changed name of GO:0080035 from "<new term>" to "2-hydroxy-but-3-enyl glucosinolate biosynthetic process"
* Set definition of GO:0080035 to "The chemical reactions and pathways resulting in the formation of progoitrin, a 2-hydroxy-but-3-enyl glucosinolate. Glucosinolates are substituted thioglucosides found in rapeseed products and related cruciferae, and progoitin has been implicated in causing goiters in mammals and bitter taste in cruciferous vegetables."
* Added definition dbxref PMID:11560911 to GO:0080035
* Added definition dbxref PMID:18945935 to GO:0080035
* Added synonym "2-hydroxy-but-3-enyl glucosinolate anabolism" to GO:0080035
* Changed synonym scope of GO:0080035 from "Related" to "Exact"
* Added synonym "2-hydroxy-but-3-enyl glucosinolate biosynthesis" to GO:0080035
* Changed synonym scope of GO:0080035 from "Related" to "Exact"
* Added synonym "2-hydroxy-but-3-enyl glucosinolate formation" to GO:0080035
* Changed synonym scope of GO:0080035 from "Related" to "Exact"
* Added synonym "2-hydroxy-but-3-enyl glucosinolate synthesis" to GO:0080035
* Added synonym "progoitrin biosynthesis" to GO:0080035
* Changed synonym scope of GO:0080035 from "Related" to "Exact"
* Added synonym "progoitrin biosynthetic process" to GO:0080035
* Added synonym "progoitrin synthesis" to GO:0080035
* Changed synonym scope of GO:0080035 from "Related" to "Exact"
* Copied GO:0080035 to GO:0019761 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0080035
* Populated new object GO:0080036 (macro)
* Changed name of GO:0080036 from "<new term>" to "regulation of cytokinin mediated signaling"
* Set definition of GO:0080036 to "Any process that modulates the frequency, rate or extent of signal transduction mediated by cytokinin."
* Added definition dbxref GOC:DL to GO:0080036
* Copied GO:0080036 to GO:0009966 with type OBO_REL:is_a
* Copied GO:0080036 to GO:0048583 with type OBO_REL:is_a
* Copied GO:0080036 to GO:0009736 with type regulates
* Assigned namespace "biological_process" to GO:0080036
* Populated new object GO:0080037 (macro)
* Changed name of GO:0080037 from "<new term>" to "negative regulation of cytokinin mediated signaling"
* Set definition of GO:0080037 to "Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by cytokinin."
* Added definition dbxref GOC:DL to GO:0080037
* Added definition dbxref PMID:14973166 to GO:0080037
* Copied GO:0080037 to GO:0009736 with type negatively_regulates
* Copied GO:0080037 to GO:0080036 with type OBO_REL:is_a
* Copied GO:0080037 to GO:0009968 with type OBO_REL:is_a
* Copied GO:0080037 to GO:0048585 with type OBO_REL:is_a
* Assigned namespace "biological_process" to GO:0080037
* Populated new object GO:0080038 (macro)
* Changed name of GO:0080038 from "<new term>" to "postive regulation of cytokinin mediated signaling"
* Set definition of GO:0080038 to "Any process that activates or increases the frequency, rate or extent of signal transduction mediated by cytokinin."
* Added definition dbxref GOC:DL to GO:0080038
* Copied GO:0080038 to GO:0048584 with type OBO_REL:is_a
* Copied GO:0080038 to GO:0009967 with type OBO_REL:is_a
* Copied GO:0080038 to GO:0080036 with type OBO_REL:is_a
* Copied GO:0080038 to GO:0009736 with type positively_regulates
* Assigned namespace "biological_process" to GO:0080038
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