[Go-diff] GO update 01/26/2009

Mon Jan 26 21:30:48 PST 2009

OBODIFF of gene_ontology_write.obo version 1.411 by 1.414

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010866
* Created object of type obo:TERM with id GO:0010867
* Created object of type obo:TERM with id GO:0010868
* Created object of type obo:TERM with id GO:0010869
* Created object of type obo:TERM with id GO:0010870
* Created object of type obo:TERM with id GO:0010871
* Created object of type obo:TERM with id GO:0070271
* Created object of type obo:TERM with id GO:0070272
* Created object of type obo:TERM with id GO:0070273
* Created object of type obo:TERM with id GO:0070274
* Populated new object GO:0010866 (macro)
  * Changed name of GO:0010866 from "<new term>" to "regulation of triacylglycerol biosynthetic process"
  * Set definition of GO:0010866 to "Any process that modulates the rate, frequency, or extent of triacylglycerol biosynthesis. Triacylglycerol biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol."
  * Added definition dbxref GOC:tb to GO:0010866
  * Copied GO:0010866 to GO:0019432 with type regulates
  * Copied GO:0010866 to GO:0046890 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010866
* Populated new object GO:0010867 (macro)
  * Changed name of GO:0010867 from "<new term>" to "positive regulation of triacylglycerol biosynthetic process"
  * Set definition of GO:0010867 to "Any process that increases the rate, frequency, or extent of triacylglycerol biosynthesis. Triacylglycerol biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol."
  * Added definition dbxref GOC:tb to GO:0010867
  * Copied GO:0010867 to GO:0046889 with type OBO_REL:is_a
  * Copied GO:0010867 to GO:0019432 with type positively_regulates
  * Copied GO:0010867 to GO:0010866 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010867
* Populated new object GO:0010868 (macro)
  * Changed name of GO:0010868 from "<new term>" to "negative regulation of triacylglycerol biosynthetic process"
  * Set definition of GO:0010868 to "Any process that decreases the rate, frequency, or extent of triacylglycerol biosynthesis. Triacylglycerol biosynthesis is the collection of chemical reactions and pathways resulting in the formation of triacylglycerol, any triester of glycerol."
  * Added definition dbxref GOC:tb to GO:0010868
  * Copied GO:0010868 to GO:0051055 with type OBO_REL:is_a
  * Copied GO:0010868 to GO:0010866 with type OBO_REL:is_a
  * Copied GO:0010868 to GO:0019432 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0010868
* Populated new object GO:0010869 (macro)
  * Changed name of GO:0010869 from "<new term>" to "regulation of receptor biosynthetic process"
  * Set definition of GO:0010869 to "Any process that modulates the frequency or rate of receptor biosynthesis. Receptor biosynthesis is the collection of chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function."
  * Added definition dbxref GOC:tb to GO:0010869
  * Copied GO:0010869 to GO:0010556 with type OBO_REL:is_a
  * Copied GO:0010869 to GO:0032800 with type regulates
  * Assigned namespace "biological_process" to GO:0010869
* Populated new object GO:0010870 (macro)
  * Changed name of GO:0010870 from "<new term>" to "positive regulation of receptor biosynthetic process"
  * Set definition of GO:0010870 to "Any process that increases the frequency or rate of receptor biosynthesis. Receptor biosynthesis is the collection of chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function."
  * Added definition dbxref GOC:tb to GO:0010870
  * Copied GO:0010870 to GO:0010557 with type OBO_REL:is_a
  * Copied GO:0010870 to GO:0010869 with type OBO_REL:is_a
  * Copied GO:0010870 to GO:0032800 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010870
* Populated new object GO:0010871 (macro)
  * Changed name of GO:0010871 from "<new term>" to "negative regulation of receptor biosynthetic process"
  * Set definition of GO:0010871 to "Any process that decreases the frequency or rate of receptor biosynthesis. Receptor biosynthesis is the collection of chemical reactions and pathways resulting in the formation of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function."
  * Added definition dbxref GOC:tb to GO:0010871
  * Copied GO:0010871 to GO:0032800 with type negatively_regulates
  * Copied GO:0010871 to GO:0010558 with type OBO_REL:is_a
  * Copied GO:0010871 to GO:0010869 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010871
* Populated new object GO:0070271 (macro)
  * Changed name of GO:0070271 from "<new term>" to "protein complex biogenesis"
  * Set definition of GO:0070271 to "The cellular process by which a protein complex is synthesized, aggregates, and bonds together. Includes the synthesis of the constituent protein molecules."
  * Added definition dbxref GOC:mah to GO:0070271
  * Added GO:0070271 to category gosubset_prok
  * Added synonym "protein complex biogenesis and assembly" to GO:0070271
  * Added general dbxref GOC:mah<new dbxref> to synonym protein complex biogenesis and assembly of GO:0070271
  * Changed synonym scope of GO:0070271 from "Related" to "Exact"
  * Copied GO:0070271 to GO:0016043 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070271
* Populated new object GO:0070272 (macro)
  * Changed name of GO:0070272 from "<new term>" to "proton-transporting ATP synthase complex biogenesis"
  * Set definition of GO:0070272 to "The biogenesis of a proton-transporting ATP synthase (also known as F-type ATPase), a two-sector ATPase found in the inner membrane of mitochondria and chloroplasts, and in bacterial plasma membranes. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together."
  * Added definition dbxref GOC:mah to GO:0070272
  * Added definition dbxref PMID:19103153 to GO:0070272
  * Added synonym "F-type ATPase complex biogenesis" to GO:0070272
  * Added general dbxref GOC:mah to synonym F-type ATPase complex biogenesis of GO:0070272
  * Changed synonym scope of GO:0070272 from "Related" to "Exact"
  * Copied GO:0070272 to GO:0070271 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070272
* Populated new object GO:0070273 (macro)
  * Changed name of GO:0070273 from "<new term>" to "phosphatidylinositol-4-phosphate binding"
  * Set definition of GO:0070273 to "Interacting selectively with phosphatidylinositol-4-phosphate, a phosphorylated derivative of phosphatidylinositol."
  * Added definition dbxref GOC:mah to GO:0070273
  * Copied GO:0070273 to GO:0035091 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070273
* Populated new object GO:0070274 (macro)
  * Changed name of GO:0070274 from "<new term>" to "RES complex"
  * Set definition of GO:0070274 to "A protein complex that is required for efficient splicing, and prevents leakage of unspliced pre-mRNAs from the nucleus (named for pre-mRNA REtention and Splicing). In Saccharomyces, the complex consists of Ist3p, Bud13p, and Pml1p."
  * Added definition dbxref PMID:15565172 to GO:0070274
  * Added definition dbxref PMID:18809678 to GO:0070274
  * Added definition dbxref PMID:19010333 to GO:0070274
  * Added definition dbxref PMID:19033360 to GO:0070274
  * Added synonym "pre-mRNA retention and splicing complex" to GO:0070274
  * Added general dbxref GOC:sre<new dbxref> to synonym pre-mRNA retention and splicing complex of GO:0070274
  * Changed synonym scope of GO:0070274 from "Related" to "Exact"
  * Copied GO:0070274 to GO:0044428 with type OBO_REL:is_a
  * Copied GO:0070274 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070274
* Changed definition of GO:0003885 from "Catalysis of the reaction: D-arabinono-1,4-lactone + O2 = D-erythro-ascorbate + H2O2." to "Catalysis of the reaction: D-arabinono-1,4-lactone + O2 = dehydro-D-arabinono-1,4-lactone + H2O2."
* Copied GO:0006461 to GO:0070271 with type part_of
* Deleted GO:0012503 --OBO_REL:is_a--> GO:0043068
* Changed name of GO:0022613 from "ribonucleoprotein complex biogenesis and assembly" to "ribonucleoprotein complex biogenesis"
* Changed definition of GO:0022613 from "The cellular process by which a complex containing RNA and proteins is synthesized, aggregates, and bonds together." to "The cellular process by which a complex containing RNA and proteins is synthesized, aggregates, and bonds together. Includes the synthesis of the constituent RNA and protein molecules."
* Added definition dbxref GOC:mah to GO:0022613
* Deleted synonym "RNA-protein complex biogenesis and assembly" from GO:0022613
* Added synonym "ribonucleoprotein complex biogenesis and assembly" to GO:0022613
* Added general dbxref GOC:mah<new dbxref> to synonym ribonucleoprotein complex biogenesis and assembly of GO:0022613
* Changed synonym scope of GO:0022613 from "Related" to "Exact"
* Added synonym "RNA-protein complex biogenesis" to GO:0022613
* Added general dbxref GOC:mah to synonym RNA-protein complex biogenesis of GO:0022613
* Changed synonym scope of GO:0022613 from "Related" to "Exact"
* Deleted GO:0030258 --OBO_REL:is_a--> GO:0043170
* Deleted GO:0032444 --OBO_REL:is_a--> GO:0043234
* Copied GO:0032444 to GO:0005667 with type OBO_REL:is_a
* Copied GO:0034293 to GO:0019953 with type OBO_REL:is_a
* Copied GO:0043461 to GO:0070272 with type part_of
* Deleted GO:0045560 --OBO_REL:is_a--> GO:0010556
* Copied GO:0045560 to GO:0010869 with type OBO_REL:is_a
* Deleted GO:0045563 --OBO_REL:is_a--> GO:0010558
* Copied GO:0045563 to GO:0010871 with type OBO_REL:is_a
* Deleted GO:0045564 --OBO_REL:is_a--> GO:0010557
* Copied GO:0045564 to GO:0010870 with type OBO_REL:is_a
* Deleted GO:0045714 --OBO_REL:is_a--> GO:0010556
* Copied GO:0045714 to GO:0010869 with type OBO_REL:is_a
* Deleted GO:0045715 --OBO_REL:is_a--> GO:0010558
* Copied GO:0045715 to GO:0010871 with type OBO_REL:is_a
* Deleted GO:0045716 --OBO_REL:is_a--> GO:0010557
* Copied GO:0045716 to GO:0010870 with type OBO_REL:is_a
* Deleted GO:0048268 --OBO_REL:is_a--> GO:0006461
* Copied GO:0048268 to GO:0043623 with type OBO_REL:is_a
* Deleted GO:0052459 --OBO_REL:is_a--> GO:0043067