[Go-diff] GO update 01/27/2009

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.414 by 1.415

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Changed definition of GO:0010243 from "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. Organic nitrogen is contained as amines in organic compounds such as amino acids and proteins." to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. An organic nitrogen compound is formally a compound containing at least one carbon-nitrogen bond."
* Added definition dbxref ChEBI:35352 to GO:0010243
* Added synonym "response to organonitrogen compound" to GO:0010243
* Added general dbxref ChEBI:35352 to synonym response to organonitrogen compound of GO:0010243
* Changed synonym scope of GO:0010243 from "Related" to "Exact"
* added secondary id GO:0012503 to GO:0012502
* Added synonym "induction of non-apoptotic programmed cell death" to GO:0012502
* Changed synonym scope of GO:0012502 from "Related" to "Narrow"
* Added synonym "induction of nonapoptotic programmed cell death" to GO:0012502
* Changed synonym scope of GO:0012502 from "Related" to "Narrow"
* Deleted GO:0012503 --OBO_REL:is_a--> GO:0012502
* Deleted GO:0012504 --OBO_REL:is_a--> GO:0012503
* Destroyed object GO:0012503
* Deleted GO:0012504 --OBO_REL:is_a--> GO:0052397
* Deleted GO:0012504 --OBO_REL:is_a--> GO:0012503
* Deleted GO:0012504 --OBO_REL:is_a--> GO:0052153
* Deleted GO:0012504 --OBO_REL:is_a--> GO:0052044
* Destroyed object GO:0012504
* Deleted GO:0014075 --OBO_REL:is_a--> GO:0010033
* Copied GO:0014075 to GO:0010243 with type OBO_REL:is_a
* Changed definition of GO:0016707 from "Catalysis of the reaction: gibberellin 20 + 2-oxoglutarate + O2 = gibberellin 1 + succinate + CO2." to "Catalysis of the reaction: a gibberellin + 2-oxoglutarate + O2 = a 3-beta-hydroxy-gibberellin + succinate + CO2."
* Added definition dbxref GOC:kad to GO:0016707
* Changed synonym scope of GO:0016707 from "Exact" to "Narrow"
* Changed synonym scope of GO:0016707 from "Exact" to "Narrow"
* Added synonym "fibrillar collagen organization" to GO:0030199
* Added general dbxref GOC:mah to synonym fibrillar collagen organization of GO:0030199
* Changed synonym scope of GO:0030199 from "Related" to "Exact"
* Added synonym "chromosomal passenger complex" to GO:0032133
* Added general dbxref GOC:mcc to synonym chromosomal passenger complex of GO:0032133
* Changed synonym scope of GO:0032133 from "Related" to "Exact"
* Changed definition of GO:0045543 from "Catalysis of the reaction: gibberellin 1 + 2-oxoglutarate + O2 = 2-beta-hydroxygibberellin 1 + succinate + CO2." to "Catalysis of the reaction: a gibberellin + 2-oxoglutarate + O2 = a 2-beta-hydroxygibberellin + succinate + CO2."
* Added definition dbxref GOC:kad to GO:0045543
* Changed synonym scope of GO:0045543 from "Exact" to "Narrow"
* added secondary id GO:0052152 to GO:0052040
* Added synonym "modulation by symbiont of host non-apoptotic programmed cell death" to GO:0052040
* Changed synonym scope of GO:0052040 from "Related" to "Narrow"
* added secondary id GO:0052153 to GO:0052042
* Added synonym "positive regulation by symbiont of host non-apoptotic programmed cell death" to GO:0052042
* Changed synonym scope of GO:0052042 from "Related" to "Narrow"
* Deleted GO:0052044 --OBO_REL:is_a--> GO:0052042
* Deleted GO:0052152 --OBO_REL:is_a--> GO:0052459
* Deleted GO:0052152 --OBO_REL:is_a--> GO:0052040
* Deleted GO:0052153 --OBO_REL:is_a--> GO:0052152
* Destroyed object GO:0052152
* Deleted GO:0052153 --OBO_REL:is_a--> GO:0052042
* Deleted GO:0052153 --OBO_REL:is_a--> GO:0052518
* Deleted GO:0052153 --OBO_REL:is_a--> GO:0052152
* Deleted GO:0012504 --OBO_REL:is_a--> GO:0052153
* Destroyed object GO:0052153
* added secondary id GO:0052459 to GO:0052248
* Added synonym "modulation by organism of non-apoptotic programmed cell death in other organism during symbiotic interaction" to GO:0052248
* Changed synonym scope of GO:0052248 from "Related" to "Narrow"
* added secondary id GO:0052518 to GO:0052330
* Added synonym "positive regulation by organism of non-apoptotic programmed cell death in other organism during symbiotic interaction" to GO:0052330
* Changed synonym scope of GO:0052330 from "Related" to "Narrow"
* Copied GO:0052330 to GO:0043068 with type OBO_REL:is_a
* Deleted GO:0052397 --OBO_REL:is_a--> GO:0052400
* Deleted GO:0052397 --OBO_REL:is_a--> GO:0052518
* Deleted GO:0012504 --OBO_REL:is_a--> GO:0052397
* Destroyed object GO:0052397
* added secondary id GO:0012504 to GO:0052400
* added secondary id GO:0052397 to GO:0052400
* Added synonym "activation by organism of non-apoptotic programmed cell death in other organism" to GO:0052400
* Changed synonym scope of GO:0052400 from "Related" to "Narrow"
* Added synonym "induction by organism of non-apoptotic programmed cell death in other organism during symbiotic interaction" to GO:0052400
* Changed synonym scope of GO:0052400 from "Related" to "Narrow"
* Added synonym "induction of non-apoptotic programmed cell death by other organism" to GO:0052400
* Deleted GO:0052400 --OBO_REL:is_a--> GO:0052330
* Copied GO:0052400 to GO:0012502 with type OBO_REL:is_a
* Copied GO:0052400 to GO:0052042 with type OBO_REL:is_a
* Deleted GO:0052459 --OBO_REL:is_a--> GO:0052248
* Deleted GO:0052518 --OBO_REL:is_a--> GO:0052459
* Deleted GO:0052152 --OBO_REL:is_a--> GO:0052459
* Destroyed object GO:0052459
* Deleted GO:0052518 --OBO_REL:is_a--> GO:0043068
* Deleted GO:0052518 --OBO_REL:is_a--> GO:0052459
* Deleted GO:0052518 --OBO_REL:is_a--> GO:0052330
* Deleted GO:0052397 --OBO_REL:is_a--> GO:0052518
* Deleted GO:0052153 --OBO_REL:is_a--> GO:0052518
* Destroyed object GO:0052518