[Go-diff] GO update 07/02/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Thu Jul 2 21:30:59 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.688 by 1.689

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070774
* Created object of type obo:TERM with id GO:0070775
* Created object of type obo:TERM with id GO:0070776
* Created object of type obo:TERM with id GO:0070777
* Created object of type obo:TERM with id GO:0070778
* Created object of type obo:TERM with id GO:0070779
* Created object of type obo:TERM with id GO:0070780
* Created object of type obo:TERM with id GO:0070781
* Created object of type obo:TERM with id GO:0070782
* Populated new object GO:0070774 (macro)
  * Changed name of GO:0070774 from "<new term>" to "phytoceramidase activity"
  * Set definition of GO:0070774 to "Catalysis of the reaction: a phytoceramide + H2O = a fatty acid + phytosphingosine."
  * Added definition dbxref GOC:pde to GO:0070774
  * Added definition dbxref PMID:11356846 to GO:0070774
  * Copied GO:0070774 to GO:0004553 with type OBO_REL:is_a
  * Copied GO:0070774 to GO:0017040 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070774
* Populated new object GO:0070775 (macro)
  * Changed name of GO:0070775 from "<new term>" to "H3 histone acetyltransferase complex"
  * Set definition of GO:0070775 to "A multisubunit complex that catalyzes the acetylation of histone H3."
  * Added definition dbxref GOC:mah to GO:0070775
  * Added synonym "H3 HAT complex" to GO:0070775
  * Added general dbxref GOC:mah to synonym H3 HAT complex of GO:0070775
  * Changed synonym scope of GO:0070775 from "Related" to "Exact"
  * Copied GO:0070775 to GO:0000123 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070775
* Populated new object GO:0070776 (macro)
  * Changed name of GO:0070776 from "<new term>" to "MOZ/MORF histone acetyltransferase complex"
  * Set definition of GO:0070776 to "A histone acetyltransferase complex that has histone H3 acetyltransferase and coactivator activities. Subunits of the human complex include MYST3/MOZ, MYST4/MORF, ING5, EAF6 and one of BRPF1, BRD1/BRPF2 and BRPF3."
  * Added definition dbxref PMID:18794358 to GO:0070776
  * Copied GO:0070776 to GO:0070775 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070776
* Populated new object GO:0070777 (macro)
  * Changed name of GO:0070777 from "<new term>" to "D-aspartate transport"
  * Set definition of GO:0070777 to "The directed movement of D-aspartate, the D-enantiomer of the anion of (2R)-2-aminobutanedioic acid, into, out of, within or between cells."
  * Added definition dbxref ChEBI:17364 to GO:0070777
  * Added definition dbxref GOC:mah to GO:0070777
  * Added definition dbxref GOC:rph to GO:0070777
  * Copied GO:0070777 to GO:0042940 with type OBO_REL:is_a
  * Copied GO:0070777 to GO:0015810 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070777
* Populated new object GO:0070778 (macro)
  * Changed name of GO:0070778 from "<new term>" to "L-aspartate transport"
  * Set definition of GO:0070778 to "The directed movement of L-aspartate, the L-enantiomer of the anion of (2R)-2-aminobutanedioic acid, into, out of, within or between cells."
  * Added definition dbxref ChEBI:17053 to GO:0070778
  * Added definition dbxref GOC:mah to GO:0070778
  * Copied GO:0070778 to GO:0015810 with type OBO_REL:is_a
  * Copied GO:0070778 to GO:0015807 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070778
* Populated new object GO:0070779 (macro)
  * Changed name of GO:0070779 from "<new term>" to "D-aspartate import"
  * Set definition of GO:0070779 to "The directed movement of D-aspartate, the L-enantiomer of the anion of 2-aminopentanedioic acid, into a cell or organelle."
  * Added definition dbxref GOC:rph to GO:0070779
  * Added GO:0070779 to category gosubset_prok
  * Added synonym "D-aspartate uptake" to GO:0070779
  * Added general dbxref GOC:mah to synonym D-aspartate uptake of GO:0070779
  * Changed synonym scope of GO:0070779 from "Related" to "Exact"
  * Copied GO:0070779 to GO:0043090 with type OBO_REL:is_a
  * Copied GO:0070779 to GO:0070777 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070779
* Populated new object GO:0070780 (macro)
  * Changed name of GO:0070780 from "<new term>" to "dihydrosphingosine-1-phosphate phosphatase activity"
  * Set definition of GO:0070780 to "Catalysis of the reaction: dihydrosphingosine 1-phosphate + H2O = dihydrosphingosine + phosphate."
  * Added definition dbxref GOC:pde to GO:0070780
  * Added definition dbxref PMID:12815058 to GO:0070780
  * Added general dbxref MetaCyc:RXN3DJ-25 to GO:0070780
  * Added synonym "dihydrosphingosine-1-phosphate phosphohydrolase activity" to GO:0070780
  * Added general dbxref GOC:mah to synonym dihydrosphingosine-1-phosphate phosphohydrolase activity of GO:0070780
  * Changed synonym scope of GO:0070780 from "Related" to "Exact"
  * Added synonym "sphinganine-1-phosphate phosphatase activity" to GO:0070780
  * Added general dbxref GOC:mah to synonym sphinganine-1-phosphate phosphatase activity of GO:0070780
  * Changed synonym scope of GO:0070780 from "Related" to "Exact"
  * Copied GO:0070780 to GO:0016791 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070780
* Populated new object GO:0070781 (macro)
  * Changed name of GO:0070781 from "<new term>" to "response to biotin"
  * Set definition of GO:0070781 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotin stimulus."
  * Added definition dbxref GOC:sl to GO:0070781
  * Added synonym "response to Bios IIB" to GO:0070781
  * Added general dbxref GOC:sl to synonym response to Bios IIB of GO:0070781
  * Changed synonym scope of GO:0070781 from "Related" to "Exact"
  * Added synonym "response to coenzyme R" to GO:0070781
  * Added general dbxref GOC:sl to synonym response to coenzyme R of GO:0070781
  * Changed synonym scope of GO:0070781 from "Related" to "Exact"
  * Added synonym "response to vitamin B7" to GO:0070781
  * Added general dbxref GOC:sl to synonym response to vitamin B7 of GO:0070781
  * Changed synonym scope of GO:0070781 from "Related" to "Exact"
  * Added synonym "response to vitamin H" to GO:0070781
  * Added general dbxref GOC:sl to synonym response to vitamin H of GO:0070781
  * Changed synonym scope of GO:0070781 from "Related" to "Exact"
  * Copied GO:0070781 to GO:0033273 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070781
* Populated new object GO:0070782 (macro)
  * Changed name of GO:0070782 from "<new term>" to "phosphatidylserine exposure on apoptotic cell surface"
  * Set definition of GO:0070782 to "A phospholipid scrambling process that results in the appearance of phosphatidylserine on the outer leaflet of the plasma membrane of an apoptotic cell, which acts as an "eat-me" signal for engulfing cells. Phosphatidylserine is exposed on the apoptotic cell surface by a phospholipid scramblase activity."
  * Added definition dbxref GOC:mah to GO:0070782
  * Added definition dbxref GOC:rk to GO:0070782
  * Added definition dbxref PMID:11536005 to GO:0070782
  * Added synonym "externalization of phosphatidylserine" to GO:0070782
  * Added general dbxref GOC:rk to synonym externalization of phosphatidylserine of GO:0070782
  * Changed synonym scope of GO:0070782 from "Related" to "Exact"
  * Copied GO:0070782 to GO:0006915 with type part_of
  * Copied GO:0070782 to GO:0017121 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070782
* Deleted GO:0006049 --OBO_REL:is_a--> GO:0044275
* Deleted GO:0006580 --OBO_REL:is_a--> GO:0006066
* Added comment "This term was made obsolete because prepilin peptidase is a single gene product, and there is no evidence that it acts as a multimer."
* Changed definition of GO:0009367 from "An enzyme complex that catalyzes the cleavage of a Gly-Phe bond to release an N-terminal, basic peptide of 5-8 residues from type IV prepilin, and then N-methylates the new N-terminal amino group." to "OBSOLETE. An enzyme complex that catalyzes the cleavage of a Gly-Phe bond to release an N-terminal, basic peptide of 5-8 residues from type IV prepilin, and then N-methylates the new N-terminal amino group."
* Deleted GO:0009367 --OBO_REL:is_a--> GO:0043234
* Deleted GO:0009367 --OBO_REL:is_a--> GO:0044425
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at f81a50
* Deleted synonym "L-aspartate transport" from GO:0015810
* Deleted GO:0018981 --OBO_REL:is_a--> GO:0006066
* Deleted GO:0019262 --OBO_REL:is_a--> GO:0044275
* Deleted GO:0019278 --OBO_REL:is_a--> GO:0044275
* Deleted GO:0019579 --OBO_REL:is_a--> GO:0046395
* Removed GO:0022904 from category goslim_candida
* Removed GO:0022904 from category goslim_generic
* Removed GO:0022904 from category goslim_goa
* Removed GO:0022904 from category goslim_pir
* Removed GO:0022904 from category goslim_plant
* Removed GO:0022904 from category goslim_yeast
* Removed GO:0022904 from category gosubset_prok
* Removed GO:0032543 from category goslim_generic
* Removed GO:0032543 from category goslim_plant
* Removed GO:0032543 from category goslim_yeast
* Removed GO:0032543 from category gosubset_prok
* Removed GO:0032544 from category goslim_generic
* Removed GO:0032544 from category goslim_plant
* Removed GO:0032544 from category goslim_yeast
* Removed GO:0032544 from category gosubset_prok
* Deleted GO:0033100 --OBO_REL:is_a--> GO:0000123
* Copied GO:0033100 to GO:0070775 with type OBO_REL:is_a
* Copied GO:0042400 to GO:0046395 with type OBO_REL:is_a
* Deleted GO:0042413 --OBO_REL:is_a--> GO:0042402
* Copied GO:0042413 to GO:0006579 with type OBO_REL:is_a
* Copied GO:0042424 to GO:0019614 with type OBO_REL:is_a
* Copied GO:0042426 to GO:0046164 with type OBO_REL:is_a
* Copied GO:0042433 to GO:0046700 with type OBO_REL:is_a
* Copied GO:0042437 to GO:0046395 with type OBO_REL:is_a
* Copied GO:0042439 to GO:0006066 with type OBO_REL:is_a
* Copied GO:0042558 to GO:0046483 with type OBO_REL:is_a
* Copied GO:0042560 to GO:0046700 with type OBO_REL:is_a
* Copied GO:0042573 to GO:0032787 with type OBO_REL:is_a
* Copied GO:0042573 to GO:0001523 with type OBO_REL:is_a
* Copied GO:0042574 to GO:0006081 with type OBO_REL:is_a
* Deleted GO:0042760 --OBO_REL:is_a--> GO:0009062
* Copied GO:0042760 to GO:0042758 with type OBO_REL:is_a
* Copied GO:0042816 to GO:0046483 with type OBO_REL:is_a
* Copied GO:0042817 to GO:0006081 with type OBO_REL:is_a
* Copied GO:0042820 to GO:0046700 with type OBO_REL:is_a
* Deleted GO:0042834 --OBO_REL:is_a--> GO:0001871
* Copied GO:0042834 to GO:0005539 with type OBO_REL:is_a
* Copied GO:0042843 to GO:0019323 with type OBO_REL:is_a
* Copied GO:0042854 to GO:0009698 with type OBO_REL:is_a
* Copied GO:0042856 to GO:0046271 with type OBO_REL:is_a
* Copied GO:0043101 to GO:0046483 with type OBO_REL:is_a
* Copied GO:0043173 to GO:0009117 with type OBO_REL:is_a
* Copied GO:0043174 to GO:0009116 with type OBO_REL:is_a
* Copied GO:0043394 to GO:0030247 with type OBO_REL:is_a
* Deleted GO:0043437 --OBO_REL:is_a--> GO:0006631
* Copied GO:0043437 to GO:0046459 with type OBO_REL:is_a
* Copied GO:0043545 to GO:0051189 with type OBO_REL:is_a
* Deleted GO:0043613 --OBO_REL:is_a--> GO:0008300
* Copied GO:0043613 to GO:0046247 with type OBO_REL:is_a
* Deleted GO:0043637 --OBO_REL:is_a--> GO:0009116
* Copied GO:0043637 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0043641 to GO:0043603 with type OBO_REL:is_a
* Copied GO:0043641 to GO:0016137 with type OBO_REL:is_a
* Deleted GO:0043643 --OBO_REL:is_a--> GO:0042180
* Copied GO:0043643 to GO:0030638 with type OBO_REL:is_a
* Copied GO:0043645 to GO:0006790 with type OBO_REL:is_a
* Deleted GO:0043649 --OBO_REL:is_a--> GO:0016054
* Copied GO:0043649 to GO:0046395 with type OBO_REL:is_a
* Deleted GO:0043651 --OBO_REL:is_a--> GO:0006631
* Copied GO:0043651 to GO:0001676 with type OBO_REL:is_a
* Copied GO:0043651 to GO:0033559 with type OBO_REL:is_a
* Copied GO:0046031 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046032 to GO:0046130 with type OBO_REL:is_a
* Copied GO:0046033 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046034 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046037 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046038 to GO:0046130 with type OBO_REL:is_a
* Copied GO:0046039 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046058 to GO:0006163 with type OBO_REL:is_a
* Copied GO:0046068 to GO:0006163 with type OBO_REL:is_a
* Copied GO:0046069 to GO:0006195 with type OBO_REL:is_a
* Copied GO:0046113 to GO:0046700 with type OBO_REL:is_a
* Copied GO:0046176 to GO:0046395 with type OBO_REL:is_a
* Copied GO:0046221 to GO:0046700 with type OBO_REL:is_a
* Deleted GO:0046224 --OBO_REL:is_a--> GO:0016999
* Copied GO:0046224 to GO:0030650 with type OBO_REL:is_a
* Deleted GO:0046226 --OBO_REL:is_a--> GO:0019439
* Copied GO:0046226 to GO:0046271 with type OBO_REL:is_a
* Copied GO:0046228 to GO:0046395 with type OBO_REL:is_a
* Copied GO:0046267 to GO:0046164 with type OBO_REL:is_a
* Copied GO:0046300 to GO:0032787 with type OBO_REL:is_a
* Copied GO:0046310 to GO:0042205 with type OBO_REL:is_a
* Deleted GO:0046333 --OBO_REL:is_a--> GO:0006576
* Copied GO:0046333 to GO:0042439 with type OBO_REL:is_a
* Copied GO:0046333 to GO:0018958 with type OBO_REL:is_a
* Copied GO:0046334 to GO:0019336 with type OBO_REL:is_a
* Copied GO:0046336 to GO:0046164 with type OBO_REL:is_a
* Deleted GO:0046337 --OBO_REL:is_a--> GO:0006644
* Copied GO:0046337 to GO:0006650 with type OBO_REL:is_a
* Deleted GO:0046338 --OBO_REL:is_a--> GO:0009395
* Copied GO:0046338 to GO:0046475 with type OBO_REL:is_a
* Copied GO:0046341 to GO:0006650 with type OBO_REL:is_a
* Copied GO:0046342 to GO:0046475 with type OBO_REL:is_a
* Copied GO:0046345 to GO:0016107 with type OBO_REL:is_a
* Deleted GO:0046348 --OBO_REL:is_a--> GO:0016052
* Copied GO:0046348 to GO:0046365 with type OBO_REL:is_a
* Deleted GO:0046350 --OBO_REL:is_a--> GO:0006022
* Copied GO:0046350 to GO:0030203 with type OBO_REL:is_a
* Copied GO:0046376 to GO:0006644 with type OBO_REL:is_a
* Copied GO:0046376 to GO:0009117 with type OBO_REL:is_a
* Changed definition of GO:0046400 from "The chemical reactions and pathways involving ketodeoxyoctanoate, 2-keto-3-deoxy-D-octaonate, an acid present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria." to "The chemical reactions and pathways involving ketodeoxyoctanoate, 2-keto-3-deoxy-D-octanoate, an acid present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria."
* Copied GO:0046433 to GO:0019637 with type OBO_REL:is_a
* Copied GO:0046443 to GO:0009117 with type OBO_REL:is_a
* Copied GO:0046444 to GO:0009161 with type OBO_REL:is_a
* Deleted GO:0046445 --OBO_REL:is_a--> GO:0034641
* Deleted GO:0046445 --OBO_REL:is_a--> GO:0006725
* Deleted GO:0046445 --OBO_REL:is_a--> GO:0009820
* Copied GO:0046445 to GO:0033076 with type OBO_REL:is_a
* Copied GO:0046448 to GO:0046483 with type OBO_REL:is_a
* Copied GO:0046449 to GO:0043603 with type OBO_REL:is_a
* Copied GO:0046450 to GO:0043603 with type OBO_REL:is_a
* Copied GO:0046452 to GO:0042558 with type OBO_REL:is_a
* Copied GO:0046465 to GO:0006644 with type OBO_REL:is_a
* Deleted GO:0046469 --OBO_REL:is_a--> GO:0006644
* Copied GO:0046469 to GO:0006650 with type OBO_REL:is_a
* Copied GO:0046475 to GO:0046503 with type OBO_REL:is_a
* Copied GO:0046478 to GO:0006687 with type OBO_REL:is_a
* Deleted GO:0046482 --OBO_REL:is_a--> GO:0009308
* Copied GO:0046482 to GO:0009072 with type OBO_REL:is_a
* Deleted GO:0046490 --OBO_REL:is_a--> GO:0044237
* Copied GO:0046490 to GO:0006644 with type OBO_REL:is_a
* Deleted GO:0046493 --OBO_REL:is_a--> GO:0044255
* Copied GO:0046493 to GO:0006644 with type OBO_REL:is_a
* Copied GO:0046493 to GO:0006664 with type OBO_REL:is_a
* Copied GO:0046499 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046500 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046502 to GO:0019752 with type OBO_REL:is_a
* Copied GO:0046514 to GO:0030149 with type OBO_REL:is_a
* Copied GO:0046653 to GO:0042558 with type OBO_REL:is_a
* Copied GO:0046655 to GO:0006520 with type OBO_REL:is_a
* Copied GO:0046657 to GO:0009063 with type OBO_REL:is_a
* Copied GO:0046710 to GO:0046128 with type OBO_REL:is_a
* Copied GO:0046712 to GO:0046130 with type OBO_REL:is_a
* Copied GO:0046900 to GO:0042558 with type OBO_REL:is_a
* Copied GO:0046900 to GO:0006575 with type OBO_REL:is_a
* Deleted GO:0048252 --OBO_REL:is_a--> GO:0006631
* Copied GO:0048252 to GO:0001676 with type OBO_REL:is_a
* Copied GO:0048503 to GO:0051861 with type OBO_REL:is_a
* Copied GO:0048503 to GO:0005545 with type OBO_REL:is_a

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