[Go-diff] GO update 07/31/2009
Remote CVS for Gene Ontology
gocvs at genome.stanford.edu
Fri Jul 31 21:30:12 PDT 2009
OBODIFF of gene_ontology_write.obo version 1.723 by 1.725
[INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo]
(allowDangling = false)
(followImports = true)
[INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo]
(allowDangling = false)
(followImports = true)
* Created object of type obo:TERM with id GO:0060784
* Created object of type obo:TERM with id GO:0060785
* Created object of type obo:TERM with id GO:0060786
* Created object of type obo:TERM with id GO:0070838
* Created object of type obo:TERM with id GO:0070839
* Created object of type obo:TERM with id GO:0070840
* Created object of type obo:TERM with id GO:0070841
* Created object of type obo:TERM with id GO:0070842
* Created object of type obo:TERM with id GO:0070843
* Created object of type obo:TERM with id GO:0070844
* Created object of type obo:TERM with id GO:0070845
* Created object of type obo:TERM with id GO:0070846
* [Changed name of GO:0060784 from "null" to "regulation of cell proliferation involved in tissue homeostasis", Set definition of GO:0060784 to "Any process that modulates the frequency, rate or extent of cell proliferation resulting in the equilibrium of the number of cell within a tissue.", Added definition dbxref GOC:dph to GO:0060784, Created link GO:0060784 -part_of-> GO:0048873, Created link GO:0060784 -OBO_REL:is_a-> GO:0042127, Assigned namespace "biological_process" to GO:0060784]
* Changed name of GO:0060784 from "null" to "regulation of cell proliferation involved in tissue homeostasis"
* Set definition of GO:0060784 to "Any process that modulates the frequency, rate or extent of cell proliferation resulting in the equilibrium of the number of cell within a tissue."
* Added definition dbxref GOC:dph to GO:0060784
* Created link GO:0060784 -part_of-> GO:0048873
* Created link GO:0060784 -OBO_REL:is_a-> GO:0042127
* Assigned namespace "biological_process" to GO:0060784
* [Changed name of GO:0060785 from "null" to "regulation of apoptosis involved in tissue homeostasis", Set definition of GO:0060785 to "Any process that modulates the occurrence or rate of cell death by apoptosis that results in the maintenance of the equilibrium of the number of cells within a tissue.", Added definition dbxref GOC:dph to GO:0060785, Created link GO:0060785 -OBO_REL:is_a-> GO:0042981, Created link GO:0060785 -part_of-> GO:0048873, Assigned namespace "biological_process" to GO:0060785]
* Changed name of GO:0060785 from "null" to "regulation of apoptosis involved in tissue homeostasis"
* Set definition of GO:0060785 to "Any process that modulates the occurrence or rate of cell death by apoptosis that results in the maintenance of the equilibrium of the number of cells within a tissue."
* Added definition dbxref GOC:dph to GO:0060785
* Created link GO:0060785 -OBO_REL:is_a-> GO:0042981
* Created link GO:0060785 -part_of-> GO:0048873
* Assigned namespace "biological_process" to GO:0060785
* [Changed name of GO:0060786 from "null" to "regulation of cell differentiation involved in tissue homeostasis", Set definition of GO:0060786 to "Any process that modulates the frequency, rate or extent of cell differentiation that contributes to the maintenance of an equilibrium of a cell type within a tissue.", Added definition dbxref GOC:dph to GO:0060786, Created link GO:0060786 -OBO_REL:is_a-> GO:0045595, Created link GO:0060786 -part_of-> GO:0048873, Assigned namespace "biological_process" to GO:0060786]
* Changed name of GO:0060786 from "null" to "regulation of cell differentiation involved in tissue homeostasis"
* Set definition of GO:0060786 to "Any process that modulates the frequency, rate or extent of cell differentiation that contributes to the maintenance of an equilibrium of a cell type within a tissue."
* Added definition dbxref GOC:dph to GO:0060786
* Created link GO:0060786 -OBO_REL:is_a-> GO:0045595
* Created link GO:0060786 -part_of-> GO:0048873
* Assigned namespace "biological_process" to GO:0060786
* [Changed name of GO:0070838 from "null" to "divalent metal ion transport", Set definition of GO:0070838 to "The directed movement of divalent metal cations, any metal ion with a +2 electric charge, into, out of, within or between cells.", Added definition dbxref GOC:mah to GO:0070838, Created link GO:0070838 -OBO_REL:is_a-> GO:0015674, Created link GO:0070838 -OBO_REL:is_a-> GO:0030001, Assigned namespace "biological_process" to GO:0070838]
* Changed name of GO:0070838 from "null" to "divalent metal ion transport"
* Set definition of GO:0070838 to "The directed movement of divalent metal cations, any metal ion with a +2 electric charge, into, out of, within or between cells."
* Added definition dbxref GOC:mah to GO:0070838
* Created link GO:0070838 -OBO_REL:is_a-> GO:0015674
* Created link GO:0070838 -OBO_REL:is_a-> GO:0030001
* Assigned namespace "biological_process" to GO:0070838
* [Changed name of GO:0070839 from "null" to "divalent metal ion export", Set definition of GO:0070839 to "The directed movement of divalent metal cations, any metal ion with a +2 electric charge, out of a cell or organelle.", Added definition dbxref GOC:mah to GO:0070839, Created link GO:0070839 -OBO_REL:is_a-> GO:0070838, Assigned namespace "biological_process" to GO:0070839]
* Changed name of GO:0070839 from "null" to "divalent metal ion export"
* Set definition of GO:0070839 to "The directed movement of divalent metal cations, any metal ion with a +2 electric charge, out of a cell or organelle."
* Added definition dbxref GOC:mah to GO:0070839
* Created link GO:0070839 -OBO_REL:is_a-> GO:0070838
* Assigned namespace "biological_process" to GO:0070839
* [Changed name of GO:0070840 from "null" to "dynein complex binding", Set definition of GO:0070840 to "Interacting selectively and non-covalently with a dynein complex, a protein complex that contains two or three dynein heavy chains and several light chains, and has microtubule motor activity.", Added definition dbxref GOC:mah to GO:0070840, Created link GO:0070840 -OBO_REL:is_a-> GO:0032403, Assigned namespace "molecular_function" to GO:0070840]
* Changed name of GO:0070840 from "null" to "dynein complex binding"
* Set definition of GO:0070840 to "Interacting selectively and non-covalently with a dynein complex, a protein complex that contains two or three dynein heavy chains and several light chains, and has microtubule motor activity."
* Added definition dbxref GOC:mah to GO:0070840
* Created link GO:0070840 -OBO_REL:is_a-> GO:0032403
* Assigned namespace "molecular_function" to GO:0070840
* [Changed name of GO:0070841 from "null" to "inclusion body assembly", Set definition of GO:0070841 to "The aggregation, arrangement and bonding together of a set of components to form an inclusion body.", Added definition dbxref GOC:mah to GO:0070841, Created link GO:0070841 -OBO_REL:is_a-> GO:0022607, Assigned namespace "biological_process" to GO:0070841]
* Changed name of GO:0070841 from "null" to "inclusion body assembly"
* Set definition of GO:0070841 to "The aggregation, arrangement and bonding together of a set of components to form an inclusion body."
* Added definition dbxref GOC:mah to GO:0070841
* Created link GO:0070841 -OBO_REL:is_a-> GO:0022607
* Assigned namespace "biological_process" to GO:0070841
* [Changed name of GO:0070842 from "null" to "aggresome assembly", Set definition of GO:0070842 to "The aggregation, arrangement and bonding together of a set of components to form an aggresome; requires the microtubule cytoskeleton and dynein.", Added definition dbxref GOC:rl to GO:0070842, Added definition dbxref PMID:14675537 to GO:0070842, Created link GO:0070842 -OBO_REL:is_a-> GO:0070841, Assigned namespace "biological_process" to GO:0070842]
* Changed name of GO:0070842 from "null" to "aggresome assembly"
* Set definition of GO:0070842 to "The aggregation, arrangement and bonding together of a set of components to form an aggresome; requires the microtubule cytoskeleton and dynein."
* Added definition dbxref GOC:rl to GO:0070842
* Added definition dbxref PMID:14675537 to GO:0070842
* Created link GO:0070842 -OBO_REL:is_a-> GO:0070841
* Assigned namespace "biological_process" to GO:0070842
* [Changed name of GO:0070843 from "null" to "misfolded protein transport", Set definition of GO:0070843 to "The directed movement of misfolded proteins in a cell, including the movement of proteins between specific compartments or structures within a cell.", Added definition dbxref GOC:mah to GO:0070843, Added definition dbxref PMID:14675537 to GO:0070843, Created link GO:0070843 -OBO_REL:is_a-> GO:0006886, Assigned namespace "biological_process" to GO:0070843]
* Changed name of GO:0070843 from "null" to "misfolded protein transport"
* Set definition of GO:0070843 to "The directed movement of misfolded proteins in a cell, including the movement of proteins between specific compartments or structures within a cell."
* Added definition dbxref GOC:mah to GO:0070843
* Added definition dbxref PMID:14675537 to GO:0070843
* Created link GO:0070843 -OBO_REL:is_a-> GO:0006886
* Assigned namespace "biological_process" to GO:0070843
* [Changed name of GO:0070844 from "null" to "polyubiquitinated protein transport", Set definition of GO:0070844 to "The directed movement of polyubiquitinated proteins in a cell, including the movement of proteins between specific compartments or structures within a cell.", Added definition dbxref GOC:mah to GO:0070844, Added definition dbxref PMID:14675537 to GO:0070844, Added synonym "polyubiquitylated protein transport" to GO:0070844, Added general dbxref GOC:mah to synonym polyubiquitylated protein transport of GO:0070844, Changed synonym scope of GO:0070844 from "Related" to "Exact", Created link GO:0070844 -OBO_REL:is_a-> GO:0006886, Assigned namespace "biological_process" to GO:0070844]
* Changed name of GO:0070844 from "null" to "polyubiquitinated protein transport"
* Set definition of GO:0070844 to "The directed movement of polyubiquitinated proteins in a cell, including the movement of proteins between specific compartments or structures within a cell."
* Added definition dbxref GOC:mah to GO:0070844
* Added definition dbxref PMID:14675537 to GO:0070844
* Added synonym "polyubiquitylated protein transport" to GO:0070844
* Added general dbxref GOC:mah to synonym polyubiquitylated protein transport of GO:0070844
* Changed synonym scope of GO:0070844 from "Related" to "Exact"
* Created link GO:0070844 -OBO_REL:is_a-> GO:0006886
* Assigned namespace "biological_process" to GO:0070844
* [Changed name of GO:0070845 from "null" to "polyubiquitinated misfolded protein transport", Set definition of GO:0070845 to "The directed movement of misfolded polyubiquitinated proteins in a cell, including the movement of proteins between specific compartments or structures within a cell.", Added definition dbxref GOC:mah to GO:0070845, Added definition dbxref PMID:14675537 to GO:0070845, Added synonym "misfolded polyubiquitinated protein transport" to GO:0070845, Added general dbxref GOC:mah to synonym misfolded polyubiquitinated protein transport of GO:0070845, Added synonym "polyubiquitylated misfolded protein transport" to GO:0070845, Added general dbxref GOC:mah to synonym polyubiquitylated misfolded protein transport of GO:0070845, Changed synonym scope of GO:0070845 from "Related" to "Exact", Created link GO:0070845 -OBO_REL:is_a-> GO:0070843, Created link GO:0070845 -OBO_REL:is_a-> GO:0070844, Assigned namespace "biological_process" to GO:0070845]
* Changed name of GO:0070845 from "null" to "polyubiquitinated misfolded protein transport"
* Set definition of GO:0070845 to "The directed movement of misfolded polyubiquitinated proteins in a cell, including the movement of proteins between specific compartments or structures within a cell."
* Added definition dbxref GOC:mah to GO:0070845
* Added definition dbxref PMID:14675537 to GO:0070845
* Added synonym "misfolded polyubiquitinated protein transport" to GO:0070845
* Added general dbxref GOC:mah to synonym misfolded polyubiquitinated protein transport of GO:0070845
* Added synonym "polyubiquitylated misfolded protein transport" to GO:0070845
* Added general dbxref GOC:mah to synonym polyubiquitylated misfolded protein transport of GO:0070845
* Changed synonym scope of GO:0070845 from "Related" to "Exact"
* Created link GO:0070845 -OBO_REL:is_a-> GO:0070843
* Created link GO:0070845 -OBO_REL:is_a-> GO:0070844
* Assigned namespace "biological_process" to GO:0070845
* [Changed name of GO:0070846 from "null" to "Hsp90 deacetylation", Set definition of GO:0070846 to "The modification of an Hsp90 protein by removal of acetyl groups.", Added definition dbxref GOC:mah to GO:0070846, Created link GO:0070846 -OBO_REL:is_a-> GO:0006476, Assigned namespace "biological_process" to GO:0070846]
* Changed name of GO:0070846 from "null" to "Hsp90 deacetylation"
* Set definition of GO:0070846 to "The modification of an Hsp90 protein by removal of acetyl groups."
* Added definition dbxref GOC:mah to GO:0070846
* Created link GO:0070846 -OBO_REL:is_a-> GO:0006476
* Assigned namespace "biological_process" to GO:0070846
* added secondary id GO:0005904 to GO:0005886
* Added synonym "plasma membrane lipid bilayer" to GO:0005886
* Added general dbxref GOC:mah to synonym plasma membrane lipid bilayer of GO:0005886
* Changed synonym scope of GO:0005886 from "Related" to "Narrow"
* Destroyed object GO:0005904
* Deleted GO:0006022 --OBO_REL:is_a--> GO:0005975
* Deleted GO:0006023 --OBO_REL:is_a--> GO:0016051
* Deleted GO:0006026 --OBO_REL:is_a--> GO:0016052
* Deleted GO:0006816 --OBO_REL:is_a--> GO:0030001
* Deleted GO:0006816 --OBO_REL:is_a--> GO:0015674
* Created link GO:0006816 -OBO_REL:is_a-> GO:0070838
* Deleted GO:0010806 --OBO_REL:is_a--> GO:0034763
* Deleted GO:0010958 --OBO_REL:is_a--> GO:0034762
* Deleted GO:0014053 --OBO_REL:is_a--> GO:0048523
* Deleted GO:0014054 --OBO_REL:is_a--> GO:0048522
* Removing consider replacement GO:0019898 to GO:0015025
* Adding replacement GO:0031225 to GO:0015025
* Created link GO:0015684 -OBO_REL:is_a-> GO:0070838
* Deleted GO:0015693 --OBO_REL:is_a--> GO:0030001
* Deleted GO:0015693 --OBO_REL:is_a--> GO:0015674
* Created link GO:0015693 -OBO_REL:is_a-> GO:0070838
* Created link GO:0031059 -OBO_REL:is_a-> GO:0070846
* Created link GO:0031063 -regulates-> GO:0070846
* Created link GO:0031064 -negatively_regulates-> GO:0070846
* Created link GO:0031065 -positively_regulates-> GO:0070846
* Deleted GO:0051942 --OBO_REL:is_a--> GO:0034763
* Deleted GO:0051943 --OBO_REL:is_a--> GO:0034764
* Deleted GO:0060031 --OBO_REL:is_a--> GO:0016477
* Changed definition of GO:0060776 from "The leaf morphogenesis process which results in the shaping of a simple leaf. A simple leaf is a leaf in which the lamina is undivided." to "The leaf morphogenesis process which results in the shaping of a simple leaf. A simple leaf is a leaf in which the lamina is undivided."
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