[Go-diff] GO update 06/01/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Mon Jun 1 21:30:54 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.625 by 1.629

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010971
* Created object of type obo:TERM with id GO:0010972
* Created object of type obo:TERM with id GO:0010973
* Created object of type obo:TERM with id GO:0010974
* Created object of type obo:TERM with id GO:0010975
* Created object of type obo:TERM with id GO:0010976
* Created object of type obo:TERM with id GO:0010977
* Created object of type obo:TERM with id GO:0010978
* Created object of type obo:TERM with id GO:0010979
* Created object of type obo:TERM with id GO:0010980
* Created object of type obo:TERM with id GO:0010981
* Created object of type obo:TERM with id GO:0010982
* Created object of type obo:TERM with id GO:0010983
* Created object of type obo:TERM with id GO:0010984
* Created object of type obo:TERM with id GO:0010985
* Created object of type obo:TERM with id GO:0010986
* Created object of type obo:TERM with id GO:0010987
* Created object of type obo:TERM with id GO:0010988
* Created object of type obo:TERM with id GO:0010989
* Created object of type obo:TERM with id GO:0060661
* Created object of type obo:TERM with id GO:0060662
* Created object of type obo:TERM with id GO:0060663
* Created object of type obo:TERM with id GO:0060664
* Created object of type obo:TERM with id GO:0060665
* Created object of type obo:TERM with id GO:0060666
* Created object of type obo:TERM with id GO:0060667
* Created object of type obo:TERM with id GO:0060668
* Populated new object GO:0010971 (macro)
  * Changed name of GO:0010971 from "<new term>" to "positive regulation of G2/M transition of mitotic cell cycle"
  * Set definition of GO:0010971 to "Any process that increases the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle."
  * Added definition dbxref GOC:dph to GO:0010971
  * Added definition dbxref GOC:tb to GO:0010971
  * Copied GO:0010971 to GO:0000086 with type positively_regulates
  * Copied GO:0010971 to GO:0045931 with type OBO_REL:is_a
  * Copied GO:0010971 to GO:0010389 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010971
* Populated new object GO:0010972 (macro)
  * Changed name of GO:0010972 from "<new term>" to "negative regulation of G2/M transition of mitotic cell cycle"
  * Set definition of GO:0010972 to "Any process that decreases the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle."
  * Added definition dbxref GOC:dph to GO:0010972
  * Added definition dbxref GOC:tb to GO:0010972
  * Copied GO:0010972 to GO:0000086 with type negatively_regulates
  * Copied GO:0010972 to GO:0045930 with type OBO_REL:is_a
  * Copied GO:0010972 to GO:0010389 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010972
* Populated new object GO:0010973 (macro)
  * Changed name of GO:0010973 from "<new term>" to "positive regulation of barrier septum formation"
  * Set definition of GO:0010973 to "Any process that increases the frequency, rate or extent of barrier septum formation. Barrier septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis."
  * Added definition dbxref GOC:dph to GO:0010973
  * Added definition dbxref GOC:tb to GO:0010973
  * Copied GO:0010973 to GO:0032467 with type OBO_REL:is_a
  * Copied GO:0010973 to GO:0000917 with type positively_regulates
  * Copied GO:0010973 to GO:0032955 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010973
* Populated new object GO:0010974 (macro)
  * Changed name of GO:0010974 from "<new term>" to "negative regulation of barrier septum formation"
  * Set definition of GO:0010974 to "Any process that decreases the frequency, rate or extent of barrier septum formation. Barrier septum formation is he assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis."
  * Added definition dbxref GOC:dph to GO:0010974
  * Added definition dbxref GOC:tb to GO:0010974
  * Copied GO:0010974 to GO:0032955 with type OBO_REL:is_a
  * Copied GO:0010974 to GO:0000917 with type negatively_regulates
  * Copied GO:0010974 to GO:0032466 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010974
* Populated new object GO:0010975 (macro)
  * Changed name of GO:0010975 from "<new term>" to "regulation of neuron projection development"
  * Set definition of GO:0010975 to "Any process that modulates the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites)."
  * Added definition dbxref GOC:dph to GO:0010975
  * Added definition dbxref GOC:tb to GO:0010975
  * Copied GO:0010975 to GO:0031175 with type regulates
  * Copied GO:0010975 to GO:0031344 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010975
* Populated new object GO:0010976 (macro)
  * Changed name of GO:0010976 from "<new term>" to "positive regulation of neuron projection development"
  * Set definition of GO:0010976 to "Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites)."
  * Added definition dbxref GOC:dph to GO:0010976
  * Added definition dbxref GOC:tb to GO:0010976
  * Copied GO:0010976 to GO:0031346 with type OBO_REL:is_a
  * Copied GO:0010976 to GO:0010975 with type OBO_REL:is_a
  * Copied GO:0010976 to GO:0031175 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010976
* Populated new object GO:0010977 (macro)
  * Changed name of GO:0010977 from "<new term>" to "negative regulation of neuron projection development"
  * Set definition of GO:0010977 to "Any process that decreases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites)."
  * Added definition dbxref GOC:dph to GO:0010977
  * Added definition dbxref GOC:tb to GO:0010977
  * Copied GO:0010977 to GO:0010975 with type OBO_REL:is_a
  * Copied GO:0010977 to GO:0031345 with type OBO_REL:is_a
  * Copied GO:0010977 to GO:0031175 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0010977
* Populated new object GO:0010978 (macro)
  * Changed name of GO:0010978 from "<new term>" to "gene silencing involved in chronological cell aging"
  * Set definition of GO:0010978 to "Any transcriptional or post-transcriptional process, arising in non-dividing cells as they age, carried out at the cellular level that results in long-term gene inactivation."
  * Added definition dbxref GOC:dph to GO:0010978
  * Added definition dbxref GOC:jp to GO:0010978
  * Added definition dbxref GOC:tb to GO:0010978
  * Copied GO:0010978 to GO:0001300 with type part_of
  * Copied GO:0010978 to GO:0016458 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010978
* Populated new object GO:0010979 (macro)
  * Changed name of GO:0010979 from "<new term>" to "regulation of vitamin D 24-hydroxylase activity"
  * Set definition of GO:0010979 to "Any process that modulates the rate, frequency or extent of vitamin D 24-hydroxylase activity. Vitamin D 24-hydroxylase activity catalyzes the hydroxylation of C-24 of any form of vitamin D."
  * Added definition dbxref GOC:dph to GO:0010979
  * Added definition dbxref GOC:tb to GO:0010979
  * Copied GO:0010979 to GO:0070576 with type regulates
  * Copied GO:0010979 to GO:0051341 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010979
* Populated new object GO:0010980 (macro)
  * Changed name of GO:0010980 from "<new term>" to "positive regulation of vitamin D 24-hydroxylase activity"
  * Set definition of GO:0010980 to "Any process that increases the rate, frequency or extent of vitamin D 24-hydroxylase activity. Vitamin D 24-hydroxylase activity catalyzes the hydroxylation of C-24 of any form of vitamin D."
  * Added definition dbxref GOC:dph to GO:0010980
  * Added definition dbxref GOC:tb to GO:0010980
  * Copied GO:0010980 to GO:0051353 with type OBO_REL:is_a
  * Copied GO:0010980 to GO:0010979 with type OBO_REL:is_a
  * Copied GO:0010980 to GO:0070576 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010980
* Populated new object GO:0010981 (macro)
  * Changed name of GO:0010981 from "<new term>" to "regulation of cell wall macromolecule metabolic process"
  * Set definition of GO:0010981 to "Any process that modulates the rate, frequency or extent of cell wall macromolecule metabolism. Cell wall macromolecule metabolic processes are the chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis."
  * Added definition dbxref GOC:dph to GO:0010981
  * Added definition dbxref GOC:tb to GO:0010981
  * Copied GO:0010981 to GO:0044036 with type regulates
  * Copied GO:0010981 to GO:0060255 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010981
* Populated new object GO:0010982 (macro)
  * Changed name of GO:0010982 from "<new term>" to "regulation of high-density lipoprotein particle clearance"
  * Set definition of GO:0010982 to "Any process that modulates the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process by which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010982
  * Added definition dbxref GOC:tb to GO:0010982
  * Copied GO:0010982 to GO:0034384 with type regulates
  * Copied GO:0010982 to GO:0010984 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010982
* Populated new object GO:0010983 (macro)
  * Changed name of GO:0010983 from "<new term>" to "positive regulation of high-density lipoprotein particle clearance"
  * Set definition of GO:0010983 to "Any process that increases the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process by which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010983
  * Added definition dbxref GOC:tb to GO:0010983
  * Copied GO:0010983 to GO:0010982 with type OBO_REL:is_a
  * Copied GO:0010983 to GO:0010986 with type OBO_REL:is_a
  * Copied GO:0010983 to GO:0034384 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010983
* Populated new object GO:0010984 (macro)
  * Changed name of GO:0010984 from "<new term>" to "regulation of lipoprotein particle clearance"
  * Set definition of GO:0010984 to "Any process that modulates the rate, frequency, or extent of lipoprotein particle clearance. Lipoprotein particle clearance is the process by which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010984
  * Added definition dbxref GOC:tb to GO:0010984
  * Copied GO:0010984 to GO:0051128 with type OBO_REL:is_a
  * Copied GO:0010984 to GO:0034381 with type regulates
  * Assigned namespace "biological_process" to GO:0010984
* Populated new object GO:0010985 (macro)
  * Changed name of GO:0010985 from "<new term>" to "negative regulation of lipoprotein particle clearance"
  * Set definition of GO:0010985 to "Any process that decreases the rate, frequency, or extent of lipoprotein particle clearance. Lipoprotein particle clearance is the process by which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010985
  * Added definition dbxref GOC:tb to GO:0010985
  * Copied GO:0010985 to GO:0051129 with type OBO_REL:is_a
  * Copied GO:0010985 to GO:0034381 with type negatively_regulates
  * Copied GO:0010985 to GO:0010984 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010985
* Populated new object GO:0010986 (macro)
  * Changed name of GO:0010986 from "<new term>" to "positive regulation of lipoprotein particle clearance"
  * Set definition of GO:0010986 to "Any process that increases the rate, frequency, or extent of lipoprotein particle clearance. Lipoprotein particle clearance is the process by which a lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010986
  * Added definition dbxref GOC:tb to GO:0010986
  * Copied GO:0010986 to GO:0051130 with type OBO_REL:is_a
  * Copied GO:0010986 to GO:0010984 with type OBO_REL:is_a
  * Copied GO:0010986 to GO:0034381 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0010986
* Populated new object GO:0010987 (macro)
  * Changed name of GO:0010987 from "<new term>" to "negative regulation of high-density lipoprotein particle clearance"
  * Set definition of GO:0010987 to "Any process that decreases the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process by which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010987
  * Added definition dbxref GOC:tb to GO:0010987
  * Copied GO:0010987 to GO:0010982 with type OBO_REL:is_a
  * Copied GO:0010987 to GO:0010985 with type OBO_REL:is_a
  * Copied GO:0010987 to GO:0034384 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0010987
* Populated new object GO:0010988 (macro)
  * Changed name of GO:0010988 from "<new term>" to "regulation of low-density lipoprotein particle clearance"
  * Set definition of GO:0010988 to "Any process that modulates the rate, frequency or extent of low-density lipoprotein particle clearance. Low-density lipoprotein particle clearance is the process by which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010988
  * Added definition dbxref GOC:tb to GO:0010988
  * Copied GO:0010988 to GO:0010984 with type OBO_REL:is_a
  * Copied GO:0010988 to GO:0034383 with type regulates
  * Assigned namespace "biological_process" to GO:0010988
* Populated new object GO:0010989 (macro)
  * Changed name of GO:0010989 from "<new term>" to "negative regulation of low-density lipoprotein particle clearance"
  * Set definition of GO:0010989 to "Any process that decreases the rate, frequency or extent of low-density lipoprotein particle clearance. Low-density lipoprotein particle clearance is the process by which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded."
  * Added definition dbxref GOC:dph to GO:0010989
  * Added definition dbxref GOC:tb to GO:0010989
  * Copied GO:0010989 to GO:0010985 with type OBO_REL:is_a
  * Copied GO:0010989 to GO:0010988 with type OBO_REL:is_a
  * Copied GO:0010989 to GO:0034383 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0010989
* Populated new object GO:0060661 (macro)
  * Changed name of GO:0060661 from "<new term>" to "submandibular salivary gland formation"
  * Set definition of GO:0060661 to "The developmental process pertaining to the initial formation of a submandibular salivary gland. This process begins with a thickening of the epithelium next to the tongue and ends when a bud linked to the oral surface is formed."
  * Added definition dbxref GOC:dph to GO:0060661
  * Added definition dbxref PMID:17336109 to GO:0060661
  * Copied GO:0060661 to GO:0048646 with type OBO_REL:is_a
  * Copied GO:0060661 to GO:0007435 with type part_of
  * Assigned namespace "biological_process" to GO:0060661
* Populated new object GO:0060662 (macro)
  * Changed name of GO:0060662 from "<new term>" to "salivary gland cavitation"
  * Set definition of GO:0060662 to "The process by which the solid core of salivary epithelium gives rise to the hollow tube of the gland."
  * Added definition dbxref GOC:dph to GO:0060662
  * Copied GO:0060662 to GO:0007435 with type part_of
  * Copied GO:0060662 to GO:0060605 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060662
* Populated new object GO:0060663 (macro)
  * Changed name of GO:0060663 from "<new term>" to "apoptosis involved in salivary gland cavitation"
  * Set definition of GO:0060663 to "The apoptosis process in which the solid core of the gland is hollowed out to form the duct."
  * Added definition dbxref GOC:dph to GO:0060663
  * Added definition dbxref PMID:17336109 to GO:0060663
  * Copied GO:0060663 to GO:0060561 with type OBO_REL:is_a
  * Copied GO:0060663 to GO:0060662 with type part_of
  * Assigned namespace "biological_process" to GO:0060663
* Populated new object GO:0060664 (macro)
  * Changed name of GO:0060664 from "<new term>" to "epithelial cell proliferation involved in salivary gland morphogenesis"
  * Set definition of GO:0060664 to "The multiplication or reproduction of epithelial cells of the submandibular salivary gland, resulting in the expansion of a cell population and the shaping of the gland."
  * Added definition dbxref GOC:dph to GO:0060664
  * Added definition dbxref PMID:17336109 to GO:0060664
  * Copied GO:0060664 to GO:0050673 with type OBO_REL:is_a
  * Copied GO:0060664 to GO:0007435 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060664
* Populated new object GO:0060665 (macro)
  * Changed name of GO:0060665 from "<new term>" to "regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling"
  * Set definition of GO:0060665 to "Any process that modulates the rate, frequency, or extent of branching involved in salivary gland morphogenesis as a result of signals being generated by the mesenchyme and received and interpreted by the salivary gland epithelium."
  * Added definition dbxref GOC:dph to GO:0060665
  * Added definition dbxref PMID:17336109 to GO:0060665
  * Copied GO:0060665 to GO:0060445 with type regulates
  * Copied GO:0060665 to GO:0022603 with type OBO_REL:is_a
  * Copied GO:0060665 to GO:0060638 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060665
* Populated new object GO:0060666 (macro)
  * Changed name of GO:0060666 from "<new term>" to "dichotomous subdivision of terminal units involved in salivary gland branching"
  * Set definition of GO:0060666 to "The process whereby a salivary epithelial cord bifurcates at its end."
  * Added definition dbxref GOC:dph to GO:0060666
  * Copied GO:0060666 to GO:0060600 with type OBO_REL:is_a
  * Copied GO:0060666 to GO:0060445 with type part_of
  * Assigned namespace "biological_process" to GO:0060666
* Populated new object GO:0060667 (macro)
  * Changed name of GO:0060667 from "<new term>" to "branch elongation involved in salivary gland morphogenesis"
  * Set definition of GO:0060667 to "The differential growth of the salivary branches along their axis, resulting in the growth of a branch."
  * Added definition dbxref GOC:dph to GO:0060667
  * Copied GO:0060667 to GO:0060445 with type part_of
  * Copied GO:0060667 to GO:0060560 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060667
* Populated new object GO:0060668 (macro)
  * Changed name of GO:0060668 from "<new term>" to "regulation of salivary gland branching by extracellular matrix-epithelial cell signaling"
  * Set definition of GO:0060668 to "Any process that modulates the rate, frequency, or extent of salivary gland branching as a result of the transfer of information from the extracellular matrix to the epithelium of the salivary gland."
  * Added definition dbxref GOC:dph to GO:0060668
  * Copied GO:0060668 to GO:0007154 with type OBO_REL:is_a
  * Copied GO:0060668 to GO:0022603 with type OBO_REL:is_a
  * Copied GO:0060668 to GO:0060445 with type regulates
  * Assigned namespace "biological_process" to GO:0060668
* Changed definition of GO:0003677 from "Any process by which a gene product interacts selectively with DNA (deoxyribonucleic acid)." to "Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid)."
* Deleted GO:0010915 --OBO_REL:is_a--> GO:0051128
* Copied GO:0010915 to GO:0010984 with type OBO_REL:is_a
* Deleted GO:0010916 --OBO_REL:is_a--> GO:0051129
* Copied GO:0010916 to GO:0010985 with type OBO_REL:is_a
* Copied GO:0031030 to GO:0010974 with type OBO_REL:is_a
* Copied GO:0031031 to GO:0010973 with type OBO_REL:is_a
* Changed definition of GO:0032955 from "Any process that modulates the frequency, rate or extent of barrier septum formation." to "Any process that modulates the frequency, rate or extent of barrier septum formation. Barrier septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis."
* Copied GO:0034222 to GO:0010981 with type OBO_REL:is_a

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