[Go-diff] GO update 06/04/2009

Thu Jun 4 21:30:53 PDT 2009

OBODIFF of gene_ontology_write.obo version 1.637 by 1.638

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070693
* Created object of type obo:TERM with id GO:0070694
* Created object of type obo:TERM with id GO:0070695
* Created object of type obo:TERM with id GO:0070696
* Created object of type obo:TERM with id GO:0070697
* Created object of type obo:TERM with id GO:0070698
* Created object of type obo:TERM with id GO:0070699
* Created object of type obo:TERM with id GO:0070700
* Populated new object GO:0070693 (macro)
  * Changed name of GO:0070693 from "<new term>" to "P-TEFb-cap methyltransferase complex"
  * Set definition of GO:0070693 to "A protein complex that is formed by the association of positive transcription elongation factor complex b (P-TEFb) with the mRNA capping methyltransferase."
  * Added definition dbxref PMID:17332744 to GO:0070693
  * Added definition dbxref PMID:19328067 to GO:0070693
  * Added synonym "Cdk9-Pcm1 complex" to GO:0070693
  * Added general dbxref GOC:vw to synonym Cdk9-Pcm1 complex of GO:0070693
  * Changed synonym scope of GO:0070693 from "Related" to "Narrow"
  * Added synonym "P-TEFb-Pcm1 complex" to GO:0070693
  * Added general dbxref GOC:vw to synonym P-TEFb-Pcm1 complex of GO:0070693
  * Changed synonym scope of GO:0070693 from "Related" to "Narrow"
  * Copied GO:0070693 to GO:0044428 with type OBO_REL:is_a
  * Copied GO:0070693 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070693
* Populated new object GO:0070694 (macro)
  * Changed name of GO:0070694 from "<new term>" to "deoxyribonucleoside 5'-monophosphate N-gylcosidase activity"
  * Set definition of GO:0070694 to "Catalysis of the reaction: a deoxyribonucleoside 5'-monophosphate + H20 = deoxyribose 5-monophosphate + a purine or pyrimidine base."
  * Added definition dbxref GOC:ab to GO:0070694
  * Added definition dbxref PMID:17234634 to GO:0070694
  * Added general dbxref EC:3.2.2.- to GO:0070694
  * Copied GO:0070694 to GO:0016799 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070694
* Populated new object GO:0070695 (macro)
  * Changed name of GO:0070695 from "<new term>" to "FHF complex"
  * Added comment "Note that the gene/protein name 'APC' should not be confused with the abbreviation for 'anaphase promoting complex'."
  * Set definition of GO:0070695 to "A protein complex that is composed of AKTIP/FTS, FAM160A2/p107FHIP, and one or more members of the Hook family of proteins, HOOK1, HOOK2, and HOOK3. The complex is thought to promote vesicle trafficking and/or fusion, and associates with the homotypic vesicular sorting complex (the HOPS complex)."
  * Added definition dbxref GOC:ab to GO:0070695
  * Added definition dbxref GOC:mah to GO:0070695
  * Added definition dbxref PMID:18799622 to GO:0070695
  * Copied GO:0070695 to GO:0044444 with type OBO_REL:is_a
  * Copied GO:0070695 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070695
* Populated new object GO:0070696 (macro)
  * Changed name of GO:0070696 from "<new term>" to "transmembrane receptor protein serine/threonine kinase binding"
  * Set definition of GO:0070696 to "Interacting selectively with a receptor that spans a cell membrane and possesses protein serine/threonine kinase activity."
  * Added definition dbxref GOC:mah to GO:0070696
  * Copied GO:0070696 to GO:0033612 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070696
* Populated new object GO:0070697 (macro)
  * Changed name of GO:0070697 from "<new term>" to "activin receptor binding"
  * Set definition of GO:0070697 to "Interacting selectively with an activin receptor."
  * Added definition dbxref GOC:vk to GO:0070697
  * Copied GO:0070697 to GO:0070696 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070697
* Populated new object GO:0070698 (macro)
  * Changed name of GO:0070698 from "<new term>" to "type I activin receptor binding"
  * Set definition of GO:0070698 to "Interacting selectively with a type I activin receptor."
  * Added definition dbxref GOC:vk to GO:0070698
  * Copied GO:0070698 to GO:0070697 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070698
* Populated new object GO:0070699 (macro)
  * Changed name of GO:0070699 from "<new term>" to "type II activin receptor binding"
  * Set definition of GO:0070699 to "Interacting selectively with a type II activin receptor."
  * Added definition dbxref GOC:vk to GO:0070699
  * Copied GO:0070699 to GO:0070697 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070699
* Populated new object GO:0070700 (macro)
  * Changed name of GO:0070700 from "<new term>" to "BMP receptor binding"
  * Set definition of GO:0070700 to "Interacting selectively with a BMP receptor."
  * Added definition dbxref GOC:vk to GO:0070700
  * Added synonym "bone morphogenetic protein receptor binding" to GO:0070700
  * Added general dbxref GOC:mah to synonym bone morphogenetic protein receptor binding of GO:0070700
  * Changed synonym scope of GO:0070700 from "Related" to "Exact"
  * Copied GO:0070700 to GO:0070696 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070700
* Deleted GO:0000440 --OBO_REL:is_a--> GO:0044428
* Deleted GO:0005160 --OBO_REL:is_a--> GO:0005102
* Copied GO:0005160 to GO:0070696 with type OBO_REL:is_a
* Deleted GO:0032944 --OBO_REL:is_a--> GO:0042127
* Deleted GO:0032945 --OBO_REL:is_a--> GO:0008285
* Deleted GO:0032946 --OBO_REL:is_a--> GO:0008284
* Deleted definition dbxref GOC:ed from GO:0044094
* Added definition dbxref GOC:ecd to GO:0044094
* Deleted definition dbxref GOC:ed from GO:0044095
* Added definition dbxref GOC:ecd to GO:0044095
* Deleted GO:0050770 --OBO_REL:is_a--> GO:0031344
* Deleted GO:0050773 --OBO_REL:is_a--> GO:0031344
* Deleted definition dbxref GOC:ed from GO:0055114
* Added definition dbxref GOC:ecd to GO:0055114
* Deleted definition dbxref GOC:ed from GO:0055117
* Added definition dbxref GOC:ecd to GO:0055117
* Deleted definition dbxref GOC:ed from GO:0055118
* Added definition dbxref GOC:ecd to GO:0055118
* Deleted definition dbxref GOC:ed from GO:0055119
* Added definition dbxref GOC:ecd to GO:0055119
* Changed name of GO:0070680 from "asparaginyl-tRNAasn biosynthesis via transamidation" to "asparaginyl-tRNAAsn biosynthesis via transamidation"
* Changed definition of GO:0070680 from "A tRNA aminoacylation process in which asparaginyl-tRNAasn is formed by a tRNA-dependent two-step pathway. In the first step a non-discriminating aspartyl-tRNA synthetase generates the misacylated L-aspartyl-tRNAasn species, and in the second step it is amidated to the correctly charged L-asparaginyl-tRNAasn by the heterotrimeric aspartyl-tRNAAsn amidotransferase." to "A tRNA aminoacylation process in which asparaginyl-tRNAAsn is formed by a tRNA-dependent two-step pathway. In the first step a non-discriminating aspartyl-tRNA synthetase generates the misacylated L-aspartyl-tRNAAsn species, and in the second step it is amidated to the correctly charged L-asparaginyl-tRNAAsn by the heterotrimeric aspartyl-tRNAAsn amidotransferase."
* Changed name of GO:0070681 from "glutaminyl-tRNAgln biosynthesis via transamidation" to "glutaminyl-tRNAGln biosynthesis via transamidation"
* Changed definition of GO:0070681 from "A tRNA aminoacylation process in which glutaminyl-tRNAgln is formed by a tRNA-dependent two-step pathway. In the first step a non-discriminating glutamyl-tRNAGlx synthetase generates the misacylated L-glutamyl-tRNAgln species, and in the second step it is amidated to the correctly charged L-glutaminyl-tRNAgln by a glutamyl-tRNAGln amidotransferase." to "A tRNA aminoacylation process in which glutaminyl-tRNAGln is formed by a tRNA-dependent two-step pathway. In the first step a non-discriminating glutamyl-tRNAGlx synthetase generates the misacylated L-glutamyl-tRNAGln species, and in the second step it is amidated to the correctly charged L-glutaminyl-tRNAGln by a glutamyl-tRNAGln amidotransferase."