[Go-diff] GO update 06/05/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Jun 5 21:30:54 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.638 by 1.641

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060685
* Created object of type obo:TERM with id GO:0060686
* Created object of type obo:TERM with id GO:0060687
* Created object of type obo:TERM with id GO:0060688
* Populated new object GO:0060685 (macro)
  * Changed name of GO:0060685 from "<new term>" to "regulation of prostatic bud formation"
  * Set definition of GO:0060685 to "Any process that modulates the rate, frequency, or extent of prostatic bud formation, the morphogenetic process whereby a region of the fetal urogenital sinus epithelium is specified to become the prostate, resulting in prostate bud outgrowth."
  * Added definition dbxref GOC:dph to GO:0060685
  * Copied GO:0060685 to GO:0060513 with type regulates
  * Copied GO:0060685 to GO:0022603 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060685
* Populated new object GO:0060686 (macro)
  * Changed name of GO:0060686 from "<new term>" to "negative regulation of prostatic bud formation"
  * Set definition of GO:0060686 to "Any process that decreases the rate, frequency, or extent of prostatic bud formation, the morphogenetic process whereby a region of the fetal urogenital sinus epithelium is specified to become the prostate, resulting in prostate bud outgrowth."
  * Added definition dbxref GOC:dph to GO:0060686
  * Copied GO:0060686 to GO:0060685 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060686
* Populated new object GO:0060687 (macro)
  * Changed name of GO:0060687 from "<new term>" to "regulation of branching involved in prostate gland morphogenesis"
  * Set definition of GO:0060687 to "Any process that modulates the rate, frequency, or extent of prostate gland branching, the process by which the branching structure of the prostate gland is generated and organized. Morphogenesis pertains to the creation of form. A branch is a division or offshoot from a main stem."
  * Added definition dbxref GOC:dph to GO:0060687
  * Copied GO:0060687 to GO:0060688 with type OBO_REL:is_a
  * Copied GO:0060687 to GO:0060442 with type regulates
  * Assigned namespace "biological_process" to GO:0060687
* Populated new object GO:0060688 (macro)
  * Changed name of GO:0060688 from "<new term>" to "regulation of morphogenesis of a branching structure"
  * Set definition of GO:0060688 to "Any process that modulates the rate, frequency, or extent of branching morphogenesis, the process by which the anatomical structures of branches are generated and organized."
  * Added definition dbxref GOC:dph to GO:0060688
  * Copied GO:0060688 to GO:0001763 with type regulates
  * Copied GO:0060688 to GO:0022603 with type OBO_REL:is_a
  * Copied GO:0060688 to GO:0051239 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060688
* Copied GO:0000917 to GO:0022607 with type OBO_REL:is_a
* Changed definition of GO:0007416 from "The biosynthesis of a synapse." to "The biogenesis of a synapse."
* Deleted GO:0007416 --OBO_REL:is_a--> GO:0022607
* Copied GO:0007416 to GO:0044085 with type OBO_REL:is_a
* Changed name of GO:0008353 from "RNA polymerase subunit kinase activity" to "RNA polymerase II carboxy-terminal domain kinase activity"
* Changed definition of GO:0008353 from "Catalysis of the reaction: ATP + (DNA-directed RNA polymerase) = ADP + phospho-(DNA-directed RNA polymerase)." to "Catalysis of the reaction: ATP + (DNA-directed RNA polymerase II) = ADP + phospho-(DNA-directed RNA polymerase II); phosphorylation occurs on residues in the carboxy-terminal domain (CTD) repeats."
* Added definition dbxref GOC:mah to GO:0008353
* Changed synonym scope of GO:0008353 from "Exact" to "Broad"
* Changed synonym scope of GO:0008353 from "Exact" to "Broad"
* Changed synonym scope of GO:0008353 from "Narrow" to "Exact"
* Changed synonym scope of GO:0008353 from "Exact" to "Broad"
* Added synonym "RNA polymerase subunit kinase activity" to GO:0008353
* Added general dbxref EC:2.7.11.23 to synonym RNA polymerase subunit kinase activity of GO:0008353
* Changed synonym scope of GO:0008353 from "Related" to "Broad"
* Deleted GO:0010382 --OBO_REL:is_a--> GO:0044237
* Copied GO:0010382 to GO:0044260 with type OBO_REL:is_a
* Deleted GO:0015895 --OBO_REL:is_a--> GO:0015893
* Copied GO:0015895 to GO:0006810 with type OBO_REL:is_a
* Set definition of GO:0015949 to "The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide is synthesized from another nucleobase, nucleoside or nucleotide."
* Added definition dbxref GOC:mah to GO:0015949
* Added definition dbxref ISBN:0306444747 to GO:0015949
* Added definition dbxref ISBN:0471394831 to GO:0015949
* Set definition of GO:0015950 to "The chemical reactions and pathways by which a purine nucleotide is synthesized from another purine nucleotide."
* Added definition dbxref GOC:mah to GO:0015950
* Added definition dbxref ISBN:0306444747 to GO:0015950
* Added definition dbxref ISBN:0471394831 to GO:0015950
* Set definition of GO:0015951 to "The chemical reactions and pathways by which a purine ribonucleotide is synthesized from another purine ribonucleotide."
* Added definition dbxref GOC:mah to GO:0015951
* Added definition dbxref ISBN:0306444747 to GO:0015951
* Added definition dbxref ISBN:0471394831 to GO:0015951
* Set definition of GO:0015952 to "The chemical reactions and pathways by which a purine deoxyribonucleotide is synthesized from another purine deoxyribonucleotide."
* Added definition dbxref GOC:mah to GO:0015952
* Added definition dbxref ISBN:0306444747 to GO:0015952
* Added definition dbxref ISBN:0471394831 to GO:0015952
* Set definition of GO:0015953 to "The chemical reactions and pathways by which a pyrimidine nucleotide is synthesized from another pyrimidine nucleotide."
* Added definition dbxref GOC:mah to GO:0015953
* Added definition dbxref ISBN:0306444747 to GO:0015953
* Added definition dbxref ISBN:0471394831 to GO:0015953
* Set definition of GO:0015954 to "The chemical reactions and pathways by which a pyrimidine ribonucleotide is synthesized from another pyrimidine ribonucleotide."
* Added definition dbxref GOC:mah to GO:0015954
* Added definition dbxref ISBN:0306444747 to GO:0015954
* Added definition dbxref ISBN:0471394831 to GO:0015954
* Set definition of GO:0015955 to "The chemical reactions and pathways by which a pyrimidine deoxyribonucleotide is synthesized from another pyrimidine deoxyribonucleotide."
* Added definition dbxref GOC:mah to GO:0015955
* Added definition dbxref ISBN:0306444747 to GO:0015955
* Added definition dbxref ISBN:0471394831 to GO:0015955
* Set definition of GO:0016534 to "Increases the activity of cyclin-dependent protein kinase 5."
* Added definition dbxref GOC:mah to GO:0016534
* Changed synonym scope of GO:0017126 from "Exact" to "Narrow"
* Copied GO:0017126 to GO:0044085 with type OBO_REL:is_a
* Set definition of GO:0018351 to "The addition of an ester group to a cysteine residue in a protein."
* Added definition dbxref GOC:mah to GO:0018351
* Set definition of GO:0018442 to "The addition of an ester group to a glutamic acid residue in a protein."
* Added definition dbxref GOC:mah to GO:0018442
* Set definition of GO:0019686 to "The chemical reactions and pathways by which a purine nucleoside is synthesized from another purine nucleoside."
* Added definition dbxref GOC:mah to GO:0019686
* Added definition dbxref ISBN:0306444747 to GO:0019686
* Added definition dbxref ISBN:0471394831 to GO:0019686
* Set definition of GO:0019688 to "The chemical reactions and pathways by which a purine deoxyribonucleoside is synthesized from another purine deoxyribonucleoside."
* Added definition dbxref GOC:mah to GO:0019688
* Added definition dbxref ISBN:0306444747 to GO:0019688
* Added definition dbxref ISBN:0471394831 to GO:0019688
* Set definition of GO:0019689 to "The chemical reactions and pathways by which a pyrimidine nucleoside is synthesized from another pyrimidine nucleoside."
* Added definition dbxref GOC:mah to GO:0019689
* Added definition dbxref ISBN:0306444747 to GO:0019689
* Added definition dbxref ISBN:0471394831 to GO:0019689
* Set definition of GO:0019690 to "The chemical reactions and pathways by which a pyrimidine deoxyribonucleoside is synthesized from another deoxyribopyrimidine nucleoside."
* Added definition dbxref GOC:mah to GO:0019690
* Added definition dbxref ISBN:0306444747 to GO:0019690
* Added definition dbxref ISBN:0471394831 to GO:0019690
* Set definition of GO:0019714 to "The addition of an ester group to a glutamine residue in a protein."
* Added definition dbxref GOC:mah to GO:0019714
* Deleted GO:0019714 --OBO_REL:is_a--> GO:0018442
* Copied GO:0019714 to GO:0018350 with type OBO_REL:is_a
* Set definition of GO:0030293 to "Stops, prevents or reduces the activity of a transmembrane receptor protein tyrosine kinase."
* Added definition dbxref GOC:mah to GO:0030293
* Set definition of GO:0030294 to "Stops, prevents or reduces the activity of a receptor signaling protein tyrosine kinase."
* Added definition dbxref GOC:mah to GO:0030294
* Set definition of GO:0030297 to "Increases the activity of a transmembrane receptor protein tyrosine kinase."
* Added definition dbxref GOC:mah to GO:0030297
* Set definition of GO:0030298 to "Increases the activity of a receptor signaling protein tyrosine kinase."
* Added definition dbxref GOC:mah to GO:0030298
* Set definition of GO:0030379 to "Combining with neurotensin, a neuropeptide active in the central and peripheral nervous system in mammals, to initiate a change in cell activity by a mechanism independent of coupling to G proteins."
* Added definition dbxref GOC:mah to GO:0030379
* Added definition dbxref PMID:9756851 to GO:0030379
* Copied GO:0030437 to GO:0048468 with type OBO_REL:is_a
* Deleted GO:0031321 --OBO_REL:is_a--> GO:0048468
* Copied GO:0031321 to GO:0010926 with type OBO_REL:is_a
* Copied GO:0032120 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0032130 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0032940 to GO:0009987 with type OBO_REL:is_a
* Copied GO:0032964 to GO:0009059 with type OBO_REL:is_a
* Copied GO:0034994 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0035038 to GO:0022607 with type OBO_REL:is_a
* Set definition of GO:0042171 to "Catalysis of the transfer of acyl groups from acyl-CoA to lysophosphatidic acid to form phosphatidic acid."
* Added definition dbxref PMID:16369050 to GO:0042171
* Changed synonym scope of GO:0042546 from "Exact" to "Narrow"
* Set definition of GO:0045029 to "Combining with a nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by UDP."
* Added definition dbxref GOC:mah to GO:0045029
* Set definition of GO:0045030 to "Combining with a nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by UTP."
* Added definition dbxref GOC:mah to GO:0045030
* Set definition of GO:0045031 to "Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by ATP."
* Added definition dbxref GOC:mah to GO:0045031
* Set definition of GO:0045032 to "Combining with adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by ADP."
* Added definition dbxref GOC:mah to GO:0045032
* Set definition of GO:0046609 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + solute(in) = solute(in) + sulfate(out), by a channel in a cell membrane whose opening is governed by the membrane potential."
* Added definition dbxref GOC:mah to GO:0046609
* Copied GO:0051026 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0051651 to GO:0009987 with type OBO_REL:is_a
* Deleted GO:0060295 --OBO_REL:is_a--> GO:0032386
* Added synonym "prostate ductal budding" to GO:0060513
* Added general dbxref PMID:11401393 to synonym prostate ductal budding of GO:0060513
* Added general dbxref GOC:dph to synonym prostate ductal budding of GO:0060513
* Changed synonym scope of GO:0060513 from "Related" to "Exact"
* Copied GO:0060514 to GO:0060685 with type OBO_REL:is_a
* Deleted GO:0060656 --OBO_REL:is_a--> GO:0051239
* Deleted GO:0060656 --OBO_REL:is_a--> GO:0022603
* Copied GO:0060656 to GO:0060688 with type OBO_REL:is_a
* Deleted GO:0060665 --OBO_REL:is_a--> GO:0022603
* Deleted GO:0060665 --OBO_REL:is_a--> GO:0051239
* Copied GO:0060665 to GO:0060688 with type OBO_REL:is_a
* Deleted GO:0060668 --OBO_REL:is_a--> GO:0051239
* Deleted GO:0060668 --OBO_REL:is_a--> GO:0022603
* Copied GO:0060668 to GO:0060688 with type OBO_REL:is_a
* Copied GO:0070458 to GO:0033554 with type OBO_REL:is_a
* Copied GO:0070499 to GO:0022607 with type OBO_REL:is_a

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