[Go-diff] GO update 06/11/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Thu Jun 11 21:30:53 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.654 by 1.658

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010996
* Created object of type obo:TERM with id GO:0010997
* Created object of type obo:TERM with id GO:0010998
* Created object of type obo:TERM with id GO:0010999
* Created object of type obo:TERM with id GO:0060715
* Created object of type obo:TERM with id GO:0060716
* Created object of type obo:TERM with id GO:0060717
* Created object of type obo:TERM with id GO:0060718
* Created object of type obo:TERM with id GO:0060719
* Created object of type obo:TERM with id GO:0060720
* Created object of type obo:TERM with id GO:0060721
* Populated new object GO:0010996 (macro)
  * Changed name of GO:0010996 from "<new term>" to "response to auditory stimulus"
  * Set definition of GO:0010996 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auditory stimulus."
  * Added definition dbxref GOC:dph to GO:0010996
  * Added definition dbxref GOC:sl to GO:0010996
  * Added definition dbxref GOC:tb to GO:0010996
  * Added synonym "response to sound" to GO:0010996
  * Added general dbxref GOC:tb to synonym response to sound of GO:0010996
  * Added general dbxref GOC:sl to synonym response to sound of GO:0010996
  * Added general dbxref GOC:dph to synonym response to sound of GO:0010996
  * Changed synonym scope of GO:0010996 from "Related" to "Exact"
  * Added synonym "response to sound stimulus" to GO:0010996
  * Added general dbxref GOC:tb to synonym response to sound stimulus of GO:0010996
  * Added general dbxref GOC:dph to synonym response to sound stimulus of GO:0010996
  * Changed synonym scope of GO:0010996 from "Related" to "Exact"
  * Copied GO:0010996 to GO:0009612 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010996
* Populated new object GO:0010997 (macro)
  * Changed name of GO:0010997 from "<new term>" to "anaphase-promoting complex binding"
  * Set definition of GO:0010997 to "Interacting selectively with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis."
  * Added definition dbxref GOC:dph to GO:0010997
  * Added definition dbxref GOC:tb to GO:0010997
  * Added synonym "APC binding" to GO:0010997
  * Added general dbxref GOC:tb to synonym APC binding of GO:0010997
  * Added general dbxref GOC:dph to synonym APC binding of GO:0010997
  * Changed synonym scope of GO:0010997 from "Related" to "Exact"
  * Copied GO:0010997 to GO:0032403 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010997
* Populated new object GO:0010998 (macro)
  * Changed name of GO:0010998 from "<new term>" to "regulation of translational initiation by eIF2 alpha phosphorylation"
  * Set definition of GO:0010998 to "Any process that activates or increases the frequency, rate or extent of translation initiation in response to stress by the phosphorylation of eIF2 alpha."
  * Added definition dbxref GOC:dph to GO:0010998
  * Added definition dbxref GOC:hjd to GO:0010998
  * Added definition dbxref GOC:tb to GO:0010998
  * Copied GO:0010998 to GO:0043558 with type OBO_REL:is_a
  * Copied GO:0010998 to GO:0006468 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010998
* Populated new object GO:0010999 (macro)
  * Changed name of GO:0010999 from "<new term>" to "regulation of eIF2 alpha phosphorylation by heme"
  * Set definition of GO:0010999 to "Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a result of heme levels."
  * Added definition dbxref GOC:dph to GO:0010999
  * Added definition dbxref GOC:tb to GO:0010999
  * Copied GO:0010999 to GO:0010998 with type regulates
  * Copied GO:0010999 to GO:0001932 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010999
* Populated new object GO:0060715 (macro)
  * Changed name of GO:0060715 from "<new term>" to "syncitiotrophoblast cell differentiation involved in labyrinthine layer development"
  * Set definition of GO:0060715 to "The process whereby a chorionic trophoblast cell acquires specialized features of a syncitiotrophoblast of the labyrinthine layer of the placenta."
  * Added definition dbxref GOC:dph to GO:0060715
  * Copied GO:0060715 to GO:0060706 with type OBO_REL:is_a
  * Copied GO:0060715 to GO:0060711 with type part_of
  * Assigned namespace "biological_process" to GO:0060715
* Populated new object GO:0060716 (macro)
  * Changed name of GO:0060716 from "<new term>" to "labyrinthine layer blood vessel development"
  * Set definition of GO:0060716 to "The process whose specific outcome is the progression of a blood vessel of the labyrinthine layer of the placenta over time, from its formation to the mature structure. The embryonic vessels grow through the layer to come in close contact with the maternal blood supply."
  * Added definition dbxref GOC:dph to GO:0060716
  * Copied GO:0060716 to GO:0060674 with type OBO_REL:is_a
  * Copied GO:0060716 to GO:0060711 with type part_of
  * Assigned namespace "biological_process" to GO:0060716
* Populated new object GO:0060717 (macro)
  * Changed name of GO:0060717 from "<new term>" to "chorion development"
  * Set definition of GO:0060717 to "The biological process whose specific outcome is the progression of a chorion from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The chorion is an extraembryonic membrane."
  * Added definition dbxref GOC:dph to GO:0060717
  * Copied GO:0060717 to GO:0048856 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060717
* Populated new object GO:0060718 (macro)
  * Changed name of GO:0060718 from "<new term>" to "chorionic trophoblast cell differentiation"
  * Set definition of GO:0060718 to "The process whereby relatively unspecialized cells of the ectoplacental cone acquire specialized structural and/or functional features that characterize chorionic trophoblasts. These cells will migrate towards the spongiotrophoblast layer and give rise to syncytiotrophoblasts of the labyrinthine layer."
  * Added definition dbxref GOC:dph to GO:0060718
  * Added definition dbxref PMID:16983341 to GO:0060718
  * Copied GO:0060718 to GO:0060717 with type part_of
  * Copied GO:0060718 to GO:0030154 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060718
* Populated new object GO:0060719 (macro)
  * Changed name of GO:0060719 from "<new term>" to "chorionic trophoblast cell development"
  * Set definition of GO:0060719 to "The process whose specific outcome is the progression of chorionic trophoblast over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate."
  * Added definition dbxref GOC:16983341 to GO:0060719
  * Added definition dbxref GOC:dph to GO:0060719
  * Copied GO:0060719 to GO:0048468 with type OBO_REL:is_a
  * Copied GO:0060719 to GO:0060718 with type part_of
  * Assigned namespace "biological_process" to GO:0060719
* Populated new object GO:0060720 (macro)
  * Changed name of GO:0060720 from "<new term>" to "spongiotrophoblast cell proliferation"
  * Set definition of GO:0060720 to "The multiplication or reproduction of spongiotrophoblast cells, resulting in the expansion of the population in the spongiotrophoblast layer."
  * Added definition dbxref GOC:dph to GO:0060720
  * Copied GO:0060720 to GO:0008283 with type OBO_REL:is_a
  * Copied GO:0060720 to GO:0060712 with type part_of
  * Assigned namespace "biological_process" to GO:0060720
* Populated new object GO:0060721 (macro)
  * Changed name of GO:0060721 from "<new term>" to "regulation of spongiotrophoblast cell proliferation"
  * Set definition of GO:0060721 to "Any process that modulates the rate, frequency or extent of spongiotrophoblast cell proliferation."
  * Added definition dbxref GOC:dph to GO:0060721
  * Copied GO:0060721 to GO:0048638 with type OBO_REL:is_a
  * Copied GO:0060721 to GO:0042127 with type OBO_REL:is_a
  * Copied GO:0060721 to GO:0060720 with type regulates
  * Assigned namespace "biological_process" to GO:0060721
* Changed definition of GO:0001568 from "The process whose specific outcome is the progression of the blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood." to "The process whose specific outcome is the progression of a blood vessel over time, from its formation to the mature structure. The blood vessel is the vasculature carrying blood."
* Deleted GO:0001892 --OBO_REL:is_a--> GO:0001890
* Copied GO:0001892 to GO:0001890 with type part_of
* Copied GO:0001892 to GO:0048856 with type OBO_REL:is_a
* Deleted GO:0001893 --OBO_REL:is_a--> GO:0001890
* Copied GO:0001893 to GO:0001890 with type part_of
* Copied GO:0001893 to GO:0048856 with type OBO_REL:is_a
* Copied GO:0010899 to GO:0060696 with type OBO_REL:is_a
* Copied GO:0010973 to GO:0051130 with type OBO_REL:is_a
* Copied GO:0010974 to GO:0051129 with type OBO_REL:is_a
* Copied GO:0010990 to GO:0009966 with type OBO_REL:is_a
* Copied GO:0010993 to GO:0032844 with type OBO_REL:is_a
* Copied GO:0032955 to GO:0044087 with type OBO_REL:is_a
* Copied GO:0032955 to GO:0051128 with type OBO_REL:is_a
* Copied GO:0032965 to GO:0010556 with type OBO_REL:is_a
* Copied GO:0032966 to GO:0010558 with type OBO_REL:is_a
* Copied GO:0033604 to GO:0048523 with type OBO_REL:is_a
* Copied GO:0033605 to GO:0048522 with type OBO_REL:is_a
* Copied GO:0034307 to GO:0060284 with type OBO_REL:is_a
* Added synonym "regulation of translation initiation in response to stress" to GO:0043558
* Added general dbxref GOC:tb to synonym regulation of translation initiation in response to stress of GO:0043558
* Added general dbxref GOC:hjd to synonym regulation of translation initiation in response to stress of GO:0043558
* Added general dbxref GOC:dph to synonym regulation of translation initiation in response to stress of GO:0043558
* Changed synonym scope of GO:0043558 from "Related" to "Exact"
* Copied GO:0050709 to GO:0048523 with type OBO_REL:is_a
* Copied GO:0050714 to GO:0048522 with type OBO_REL:is_a
* Copied GO:0051965 to GO:0044089 with type OBO_REL:is_a
* Copied GO:0060504 to GO:0060688 with type OBO_REL:is_a
* Copied GO:0060514 to GO:0051094 with type OBO_REL:is_a
* Changed name of GO:0060674 from "placenta vasculature development" to "placenta blood vessel development"
* Changed definition of GO:0060674 from "The process whose specific outcome is the progression of the vasculature of the placenta over time, from its formation to the mature structure." to "The process whose specific outcome is the progression of a blood vessel of the placenta over time, from its formation to the mature structure."
* Copied GO:0060674 to GO:0001568 with type OBO_REL:is_a
* Copied GO:0060685 to GO:0050793 with type OBO_REL:is_a
* Copied GO:0060686 to GO:0051093 with type OBO_REL:is_a
* Copied GO:0060694 to GO:0032374 with type OBO_REL:is_a
* Copied GO:0060695 to GO:0032375 with type OBO_REL:is_a
* Copied GO:0060696 to GO:0050994 with type OBO_REL:is_a
* Copied GO:0060697 to GO:0050996 with type OBO_REL:is_a
* Copied GO:0060701 to GO:0032074 with type OBO_REL:is_a
* Changed definition of GO:0060706 from "The process whereby a relatively unspecialized cell acquires specialized features of an epithelial cell of the placenta." to "The process whereby a relatively unspecialized cell acquires specialized features of the embryonic placenta."
* Copied GO:0075296 to GO:0010720 with type OBO_REL:is_a
* Copied GO:0075297 to GO:0010721 with type OBO_REL:is_a

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