[Go-diff] GO update 06/12/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri Jun 12 21:30:54 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.658 by 1.661

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060722
* Created object of type obo:TERM with id GO:0060723
* Created object of type obo:TERM with id GO:0060724
* Created object of type obo:TERM with id GO:0060725
* Created object of type obo:TERM with id GO:0060726
* Created object of type obo:TERM with id GO:0060727
* Created object of type obo:TERM with id GO:0060728
* Created object of type obo:TERM with id GO:0060729
* Created object of type obo:TERM with id GO:0060730
* Created object of type obo:TERM with id GO:0060731
* Created object of type obo:TERM with id GO:0060732
* Created object of type obo:TERM with id GO:0060733
* Created object of type obo:TERM with id GO:0060734
* Created object of type obo:TERM with id GO:0060735
* Populated new object GO:0060722 (macro)
  * Changed name of GO:0060722 from "<new term>" to "cell proliferation involved in embryonic placenta development"
  * Set definition of GO:0060722 to "The multiplication or reproduction of cells, resulting in the expansion of the population in the embryonic placenta."
  * Added definition dbxref GOC:dph to GO:0060722
  * Copied GO:0060722 to GO:0001892 with type part_of
  * Copied GO:0060722 to GO:0008283 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060722
* Populated new object GO:0060723 (macro)
  * Changed name of GO:0060723 from "<new term>" to "regulation of cell proliferation involved in embryonic placenta development"
  * Set definition of GO:0060723 to "Any process that modulates the rate, frequency, or extent of cell proliferation involved in embryonic placenta development."
  * Added definition dbxref GOC:dph to GO:0060723
  * Copied GO:0060723 to GO:0042127 with type OBO_REL:is_a
  * Copied GO:0060723 to GO:0060722 with type regulates
  * Assigned namespace "biological_process" to GO:0060723
* Populated new object GO:0060724 (macro)
  * Changed name of GO:0060724 from "<new term>" to "coreceptor activity involved in epidermal growth factor receptor signaling pathway"
  * Set definition of GO:0060724 to "Combining with an extracellular messenger, and in cooperation with a primary EGF receptor, initiating a change in cell activity through the EGF receptor signaling pathway."
  * Added definition dbxref GOC:dph to GO:0060724
  * Added definition dbxref GOC:tb to GO:0060724
  * Copied GO:0060724 to GO:0007173 with type part_of
  * Copied GO:0060724 to GO:0015026 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0060724
* Populated new object GO:0060725 (macro)
  * Changed name of GO:0060725 from "<new term>" to "regulation of coreceptor activity"
  * Set definition of GO:0060725 to "Any process that modulates the rate or frequency of coreceptor activity, combining with an extracellular or intracellular messenger, and in cooperation with a nearby primary receptor, initiating a change in cell activity."
  * Added definition dbxref GOC:dph to GO:0060725
  * Added definition dbxref GOC:tb to GO:0060725
  * Copied GO:0060725 to GO:0065009 with type OBO_REL:is_a
  * Copied GO:0060725 to GO:0010469 with type OBO_REL:is_a
  * Copied GO:0060725 to GO:0015026 with type regulates
  * Assigned namespace "biological_process" to GO:0060725
* Populated new object GO:0060726 (macro)
  * Changed name of GO:0060726 from "<new term>" to "regulation of coreceptor activity involved in epidermal growth factor receptor signaling pathway"
  * Set definition of GO:0060726 to "Any process that modulates the rate or frequency of coreceptor activity involved in epidermal growth factor receptor signaling pathway."
  * Added definition dbxref GOC:dph to GO:0060726
  * Added definition dbxref GOC:tb to GO:0060726
  * Copied GO:0060726 to GO:0060725 with type OBO_REL:is_a
  * Copied GO:0060726 to GO:0060724 with type regulates
  * Assigned namespace "biological_process" to GO:0060726
* Populated new object GO:0060727 (macro)
  * Changed name of GO:0060727 from "<new term>" to "positive regulation of coreceptor activity involved in epidermal growth factor receptor signaling pathway"
  * Set definition of GO:0060727 to "Any process that increases the rate or frequency of coreceptor activity involved in epidermal growth factor receptor signaling pathway."
  * Added definition dbxref GOC:dph to GO:0060727
  * Added definition dbxref GOC:tb to GO:0060727
  * Copied GO:0060727 to GO:0060724 with type positively_regulates
  * Copied GO:0060727 to GO:0044093 with type OBO_REL:is_a
  * Copied GO:0060727 to GO:0060726 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060727
* Populated new object GO:0060728 (macro)
  * Changed name of GO:0060728 from "<new term>" to "negative regulation of coreceptor activity involved in epidermal growth factor receptor signaling pathway"
  * Set definition of GO:0060728 to "Any process that decreases the rate or frequency of coreceptor activity involved in epidermal growth factor receptor signaling pathway."
  * Added definition dbxref GOC:dph to GO:0060728
  * Added definition dbxref GOC:tb to GO:0060728
  * Copied GO:0060728 to GO:0044092 with type OBO_REL:is_a
  * Copied GO:0060728 to GO:0060726 with type OBO_REL:is_a
  * Copied GO:0060728 to GO:0060724 with type negatively_regulates
  * Assigned namespace "biological_process" to GO:0060728
* Populated new object GO:0060729 (macro)
  * Changed name of GO:0060729 from "<new term>" to "intestinal epithelial structure maintenance"
  * Set definition of GO:0060729 to "A tissue homeostatic process required for the maintenance of the structure of the intestinal epithelium."
  * Added definition dbxref GOC:dph to GO:0060729
  * Added definition dbxref GOC:tb to GO:0060729
  * Added synonym "epithelial structure maintenance of intestine" to GO:0060729
  * Added general dbxref GOC:tb to synonym epithelial structure maintenance of intestine of GO:0060729
  * Added general dbxref GOC:dph to synonym epithelial structure maintenance of intestine of GO:0060729
  * Changed synonym scope of GO:0060729 from "Related" to "Exact"
  * Added synonym "maintenance of intestinal epithelium" to GO:0060729
  * Added general dbxref GOC:tb to synonym maintenance of intestinal epithelium of GO:0060729
  * Added general dbxref GOC:dph to synonym maintenance of intestinal epithelium of GO:0060729
  * Changed synonym scope of GO:0060729 from "Related" to "Exact"
  * Copied GO:0060729 to GO:0010669 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060729
* Populated new object GO:0060730 (macro)
  * Changed name of GO:0060730 from "<new term>" to "regulation of intestinal epithelial structure maintenance"
  * Set definition of GO:0060730 to "Any process that modulates the rate, frequency, or extent of intestinal epithelial structure maintenance, a tissue homeostatic process required for the maintenance of the structure of the intestinal epithelium."
  * Added definition dbxref GOC:dph to GO:0060730
  * Added definition dbxref GOC:tb to GO:0060730
  * Copied GO:0060730 to GO:0060729 with type regulates
  * Copied GO:0060730 to GO:0032844 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060730
* Populated new object GO:0060731 (macro)
  * Changed name of GO:0060731 from "<new term>" to "positive regulation of intestinal epithelial structure maintenance"
  * Set definition of GO:0060731 to "Any process the increases the rate, frequency or extent of intestinal epithelial structure maintenance, a tissue homeostatic process required for the maintenance of the structure of the intestinal epithelium."
  * Added definition dbxref GOC:dph to GO:0060731
  * Added definition dbxref GOC:tb to GO:0060731
  * Copied GO:0060731 to GO:0060730 with type OBO_REL:is_a
  * Copied GO:0060731 to GO:0032846 with type OBO_REL:is_a
  * Copied GO:0060731 to GO:0060729 with type positively_regulates
  * Assigned namespace "biological_process" to GO:0060731
* Populated new object GO:0060732 (macro)
  * Changed name of GO:0060732 from "<new term>" to "positive regulation of inositol phosphate biosynthetic process"
  * Set definition of GO:0060732 to "Any process that increases the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached."
  * Added definition dbxref GOC:dph to GO:0060732
  * Added definition dbxref GOC:tb to GO:0060732
  * Copied GO:0060732 to GO:0031328 with type OBO_REL:is_a
  * Copied GO:0060732 to GO:0032958 with type positively_regulates
  * Copied GO:0060732 to GO:0010919 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060732
* Populated new object GO:0060733 (macro)
  * Changed name of GO:0060733 from "<new term>" to "regulation of eIF2 alpha phosphorylation by amino acid starvation"
  * Set definition of GO:0060733 to "Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a cellular response to amino acid starvation."
  * Added definition dbxref GOC:dph to GO:0060733
  * Added definition dbxref GOC:tb to GO:0060733
  * Copied GO:0060733 to GO:0034198 with type OBO_REL:is_a
  * Copied GO:0060733 to GO:0001932 with type OBO_REL:is_a
  * Copied GO:0060733 to GO:0010998 with type regulates
  * Assigned namespace "biological_process" to GO:0060733
* Populated new object GO:0060734 (macro)
  * Changed name of GO:0060734 from "<new term>" to "regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress"
  * Set definition of GO:0060734 to "Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a cellular response to endoplasmic reticulum stress."
  * Added definition dbxref GOC:dph to GO:0060734
  * Added definition dbxref GOC:tb to GO:0060734
  * Added synonym "regulation of eIF2 alpha phosphorylation by ER stress" to GO:0060734
  * Added general dbxref GOC:tb to synonym regulation of eIF2 alpha phosphorylation by ER stress of GO:0060734
  * Added general dbxref GOC:dph to synonym regulation of eIF2 alpha phosphorylation by ER stress of GO:0060734
  * Changed synonym scope of GO:0060734 from "Related" to "Exact"
  * Copied GO:0060734 to GO:0010998 with type regulates
  * Copied GO:0060734 to GO:0034976 with type OBO_REL:is_a
  * Copied GO:0060734 to GO:0001932 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060734
* Populated new object GO:0060735 (macro)
  * Changed name of GO:0060735 from "<new term>" to "regulation of eIF2 alpha phosphorylation by dsRNA"
  * Set definition of GO:0060735 to "Any process that modulates the rate, frequency, or extent of eIF2 alpha phosphorylation as a cellular response to double-stranded RNA."
  * Added definition dbxref GOC:dph to GO:0060735
  * Added definition dbxref GOC:tb to GO:0060735
  * Added synonym "regulation of eIF2 alpha phosphorylation by double-stranded RNA" to GO:0060735
  * Added general dbxref GOC:dph to synonym regulation of eIF2 alpha phosphorylation by double-stranded RNA of GO:0060735
  * Changed synonym scope of GO:0060735 from "Related" to "Exact"
  * Added synonym "regulation of eIF2 alpha phosphorylation by PKR" to GO:0060735
  * Added general dbxref GOC:tb to synonym regulation of eIF2 alpha phosphorylation by PKR of GO:0060735
  * Added general dbxref GOC:dph to synonym regulation of eIF2 alpha phosphorylation by PKR of GO:0060735
  * Changed synonym scope of GO:0060735 from "Related" to "Narrow"
  * Copied GO:0060735 to GO:0010998 with type regulates
  * Copied GO:0060735 to GO:0043331 with type OBO_REL:is_a
  * Copied GO:0060735 to GO:0001932 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060735
* Added synonym "decidua development" to GO:0001893
* Added general dbxref GOC:dph to synonym decidua development of GO:0001893
* Deleted GO:0010154 --OBO_REL:is_a--> GO:0009791
* Copied GO:0030545 to GO:0010469 with type part_of
* Changed name of GO:0060669 from "embryonic placental morphogenesis" to "embryonic placenta morphogenesis"
* Changed name of GO:0060670 from "branching involved in embryonic placental morphogenesis" to "branching involved in embryonic placenta morphogenesis"
* Changed definition of GO:0060671 from "The process whereby a trophoblast cell acquires specialized features of an epithelial cell of the placenta." to "The process whereby a trophoblast cell acquires specialized features of an epithelial cell of the placental layrinthine layer."
* Copied GO:0060671 to GO:0060711 with type part_of
* Copied GO:0060672 to GO:0060670 with type part_of
* Deleted GO:0060720 --OBO_REL:is_a--> GO:0008283
* Copied GO:0060720 to GO:0060722 with type OBO_REL:is_a
* Copied GO:0060721 to GO:0060723 with type OBO_REL:is_a
* Copied GO:0080127 to GO:0009791 with type OBO_REL:is_a

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