[Go-diff] GO update 06/18/2009

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.668 by 1.670

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070732
* Created object of type obo:TERM with id GO:0070733
* Populated new object GO:0070732 (macro)
  * Changed name of GO:0070732 from "<new term>" to "spindle envelope"
  * Set definition of GO:0070732 to "An organelle envelope that surrounds the chromosomes and the central part of the spindle apparatus during mitosis and meiosis; observed in many invertebrates. The spindle envelope consists of membrane layers, called parafusorial membranes, derived from endoplasmic reticulum membrane; in male meiosis it forms during prometaphase and persists until early in the ensuing interphase."
  * Added definition dbxref GOC:mah to GO:0070732
  * Added definition dbxref GOC:sart to GO:0070732
  * Added definition dbxref PMID:19417004 to GO:0070732
  * Added definition dbxref PMID:6428889 to GO:0070732
  * Added GO:0070732 to category goslim_candida
  * Added GO:0070732 to category goslim_yeast
  * Copied GO:0070732 to GO:0031967 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070732
* Populated new object GO:0070733 (macro)
  * Changed name of GO:0070733 from "<new term>" to "protein adenylyltransferase activity"
  * Set definition of GO:0070733 to "Catalysis of the reaction: ATP + protein = diphosphate + adenylyl-protein; mediates the addition of an adenylyl (adenosine 5'-monophosphate; AMP group) to specific residues of target proteins."
  * Added definition dbxref GOC:mah to GO:0070733
  * Added definition dbxref PMID:19039103 to GO:0070733
  * Added definition dbxref PMID:19362538 to GO:0070733
  * Added GO:0070733 to category gosubset_prok
  * Added synonym "adenosine monophosphate-protein transferase activity" to GO:0070733
  * Added general dbxref GOC:mah to synonym adenosine monophosphate-protein transferase activity of GO:0070733
  * Changed synonym scope of GO:0070733 from "Related" to "Exact"
  * Added synonym "AMPylator" to GO:0070733
  * Added general dbxref GOC:mah to synonym AMPylator of GO:0070733
  * Copied GO:0070733 to GO:0070566 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070733
* Deleted GO:0002818 --OBO_REL:is_a--> GO:0009987
* Deleted GO:0005275 --OBO_REL:is_a--> GO:0015837
* Copied GO:0005275 to GO:0015837 with type part_of
* Deleted GO:0006308 --OBO_REL:is_a--> GO:0044265
* Deleted GO:0006401 --OBO_REL:is_a--> GO:0044265
* Copied GO:0007231 to GO:0033554 with type OBO_REL:is_a
* Copied GO:0008207 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0008209 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0008210 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0008211 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0008212 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0008298 to GO:0070727 with type OBO_REL:is_a
* Copied GO:0008299 to GO:0044249 with type OBO_REL:is_a
* Added synonym "hypodermis development" to GO:0008544
* Added general dbxref GOC:kmv to synonym hypodermis development of GO:0008544
* Added general dbxref GOC:rk to synonym hypodermis development of GO:0008544
* Copied GO:0008654 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0009252 to GO:0034637 with type OBO_REL:is_a
* Copied GO:0009626 to GO:0033554 with type OBO_REL:is_a
* Copied GO:0009683 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0009690 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0009692 to GO:0034754 with type OBO_REL:is_a
* Copied GO:0009755 to GO:0032870 with type OBO_REL:is_a
* Copied GO:0009756 to GO:0051716 with type OBO_REL:is_a
* Copied GO:0009863 to GO:0051716 with type OBO_REL:is_a
* Copied GO:0009867 to GO:0051716 with type OBO_REL:is_a
* Changed synonym scope of GO:0009913 from "Exact" to "Narrow"
* Added synonym "hypodermal cell differentiation" to GO:0009913
* Added general dbxref GOC:kmv to synonym hypodermal cell differentiation of GO:0009913
* Added general dbxref GOC:rk to synonym hypodermal cell differentiation of GO:0009913
* Changed definition of GO:0009957 from "Process by which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed." to "The process by which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed."
* Changed synonym scope of GO:0009957 from "Exact" to "Narrow"
* Added synonym "hypodermal cell fate specification" to GO:0009957
* Added general dbxref GOC:kmv to synonym hypodermal cell fate specification of GO:0009957
* Added general dbxref GOC:rk to synonym hypodermal cell fate specification of GO:0009957
* Copied GO:0010017 to GO:0051716 with type OBO_REL:is_a
* Deleted GO:0010252 --OBO_REL:is_a--> GO:0009850
* Copied GO:0010252 to GO:0048878 with type OBO_REL:is_a
* Deleted synonym "gibberrellin homeostasis" from GO:0010336
* Added synonym "gibberellin homeostasis" to GO:0010336
* Changed synonym scope of GO:0010336 from "Related" to "Broad"
* Deleted GO:0010336 --OBO_REL:is_a--> GO:0009685
* Copied GO:0010384 to GO:0010382 with type OBO_REL:is_a
* Copied GO:0010393 to GO:0044264 with type OBO_REL:is_a
* Copied GO:0010395 to GO:0044264 with type OBO_REL:is_a
* Copied GO:0010411 to GO:0044264 with type OBO_REL:is_a
* Copied GO:0010412 to GO:0044264 with type OBO_REL:is_a
* Added synonym "hypodermal cell division" to GO:0010481
* Added general dbxref GOC:kmv to synonym hypodermal cell division of GO:0010481
* Added general dbxref GOC:rk to synonym hypodermal cell division of GO:0010481
* Added synonym "regulation of hypodermal cell division" to GO:0010482
* Added general dbxref GOC:kmv to synonym regulation of hypodermal cell division of GO:0010482
* Added general dbxref GOC:rk to synonym regulation of hypodermal cell division of GO:0010482
* Copied GO:0010767 to GO:0034644 with type OBO_REL:is_a
* Copied GO:0016063 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0017180 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0017183 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0018250 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0018865 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0019243 --OBO_REL:is_a--> GO:0051595
* Copied GO:0019262 to GO:0044275 with type OBO_REL:is_a
* Copied GO:0019276 to GO:0044262 with type OBO_REL:is_a
* Copied GO:0019278 to GO:0044275 with type OBO_REL:is_a
* Copied GO:0019331 to GO:0034641 with type OBO_REL:is_a
* Deleted GO:0019350 --OBO_REL:is_a--> GO:0019349
* Copied GO:0019350 to GO:0044264 with type OBO_REL:is_a
* Copied GO:0019409 to GO:0034641 with type OBO_REL:is_a
* Copied GO:0019680 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0019879 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0021787 to GO:0051716 with type OBO_REL:is_a
* Copied GO:0021788 to GO:0051716 with type OBO_REL:is_a
* Copied GO:0021790 to GO:0051716 with type OBO_REL:is_a
* Copied GO:0021791 to GO:0051716 with type OBO_REL:is_a
* Deleted GO:0031179 --OBO_REL:is_a--> GO:0043412
* Added GO:0034641 to category goslim_pombe
* Deleted GO:0042049 --OBO_REL:is_a--> GO:0006637
* Deleted GO:0042446 --OBO_REL:is_a--> GO:0044249
* Deleted GO:0042447 --OBO_REL:is_a--> GO:0044248
* Changed definition of GO:0044037 from "The chemical reactions and pathways involving macromolecules forming, or destined to form, part of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis, involving more than one organism." to "The chemical reactions and pathways involving macromolecules forming, or destined to form, part of a cell wall, involving more than one organism. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis."
* Added synonym "regulation of hypodermal cell differentiation" to GO:0045604
* Added general dbxref GOC:kmv to synonym regulation of hypodermal cell differentiation of GO:0045604
* Added general dbxref GOC:rk to synonym regulation of hypodermal cell differentiation of GO:0045604
* Added synonym "negative regulation of hypodermal cell differentiation" to GO:0045605
* Added general dbxref GOC:kmv to synonym negative regulation of hypodermal cell differentiation of GO:0045605
* Added general dbxref GOC:rk to synonym negative regulation of hypodermal cell differentiation of GO:0045605
* Added synonym "positive regulation of hypodermal cell differentiation" to GO:0045606
* Added general dbxref GOC:kmv to synonym positive regulation of hypodermal cell differentiation of GO:0045606
* Added general dbxref GOC:rk to synonym positive regulation of hypodermal cell differentiation of GO:0045606
* Added synonym "regulation of hypodermis development" to GO:0045682
* Added general dbxref GOC:kmv to synonym regulation of hypodermis development of GO:0045682
* Added general dbxref GOC:rk to synonym regulation of hypodermis development of GO:0045682
* Added synonym "negative regulation of hypodermis development" to GO:0045683
* Added general dbxref GOC:kmv to synonym negative regulation of hypodermis development of GO:0045683
* Added general dbxref GOC:rk to synonym negative regulation of hypodermis development of GO:0045683
* Added synonym "positive regulation of hypodermis development" to GO:0045684
* Added general dbxref GOC:kmv to synonym positive regulation of hypodermis development of GO:0045684
* Added general dbxref GOC:rk to synonym positive regulation of hypodermis development of GO:0045684
* Deleted GO:0048254 --OBO_REL:is_a--> GO:0016074
* Added synonym "hypodermis morphogenesis" to GO:0048730
* Added general dbxref GOC:kmv to synonym hypodermis morphogenesis of GO:0048730
* Added general dbxref GOC:rk to synonym hypodermis morphogenesis of GO:0048730
* Deleted GO:0060513 --part_of--> GO:0060512
* Deleted GO:0060685 --OBO_REL:is_a--> GO:0022603