[Go-diff] GO update 06/29/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Mon Jun 29 21:30:59 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.682 by 1.683

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070762
* Created object of type obo:TERM with id GO:0070763
* Created object of type obo:TERM with id GO:0070764
* Created object of type obo:TERM with id GO:0070765
* Created object of type obo:TERM with id GO:0070766
* Created object of type obo:TERM with id GO:0070767
* Created object of type obo:TERM with id GO:0070768
* Created object of type obo:TERM with id GO:0070769
* Created object of type obo:TERM with id GO:0070770
* Created object of type obo:TERM with id GO:0070771
* Populated new object GO:0070762 (macro)
  * Changed name of GO:0070762 from "<new term>" to "NDC1 complex"
  * Set definition of GO:0070762 to "A protein complex that forms part of the nuclear pore complex, and contains three transmembrane nucleoporins, encoded in S. cerevisiae by Ndc1p, Pom152p and Pom34p."
  * Added definition dbxref GOC:mah to GO:0070762
  * Added definition dbxref PMID:19414609 to GO:0070762
  * Added synonym "NDC1 subcomplex" to GO:0070762
  * Added general dbxref PMID:19414609 to synonym NDC1 subcomplex of GO:0070762
  * Changed synonym scope of GO:0070762 from "Related" to "Exact"
  * Copied GO:0070762 to GO:0044425 with type OBO_REL:is_a
  * Copied GO:0070762 to GO:0044428 with type OBO_REL:is_a
  * Copied GO:0070762 to GO:0005643 with type part_of
  * Copied GO:0070762 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070762
* Populated new object GO:0070763 (macro)
  * Changed name of GO:0070763 from "<new term>" to "Delta1 complex"
  * Set definition of GO:0070763 to "A protein complex that consists of homodimer of the Notch ligand Delta1."
  * Added definition dbxref PMID:12794186 to GO:0070763
  * Added synonym "Delta1 homodimer complex" to GO:0070763
  * Added general dbxref CORUM:3271 to synonym Delta1 homodimer complex of GO:0070763
  * Changed synonym scope of GO:0070763 from "Related" to "Exact"
  * Copied GO:0070763 to GO:0044459 with type OBO_REL:is_a
  * Copied GO:0070763 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070763
* Populated new object GO:0070764 (macro)
  * Changed name of GO:0070764 from "<new term>" to "gamma-secretase-Delta1 complex"
  * Set definition of GO:0070764 to "A protein complex that is formed by the association of the Notch ligand Delta1 with the gamma-secretase complex."
  * Added definition dbxref PMID:12794186 to GO:0070764
  * Copied GO:0070764 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0070764 to GO:0044459 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070764
* Populated new object GO:0070765 (macro)
  * Changed name of GO:0070765 from "<new term>" to "gamma-secretase complex"
  * Set definition of GO:0070765 to "A protein complex that has aspartic-type endopeptidase activity, and contains a catalytic subunit, presenilin (PS), that is a prototypical member of the GxGD-type aspartyl peptidases. The complex also contains additional subunits, including nicastrin, APH-1, PEN-2, and a regulatory subunit, CD147. Gamma-secretase cleaves several transmembrane proteins including the cell surface receptor Notch and the beta-amyloid precursor protein."
  * Added definition dbxref GOC:mah to GO:0070765
  * Added definition dbxref PMID:15286082 to GO:0070765
  * Added definition dbxref PMID:15890777 to GO:0070765
  * Added definition dbxref PMID:17047368 to GO:0070765
  * Added synonym "CD147-gamma-secretase complex (APH-1a, PS-1, PEN-2, NCT variant)" to GO:0070765
  * Added general dbxref CORUM:142 to synonym CD147-gamma-secretase complex (APH-1a, PS-1, PEN-2, NCT variant) of GO:0070765
  * Changed synonym scope of GO:0070765 from "Related" to "Narrow"
  * Added synonym "gamma-secretase complex (APH1A, PSEN1, PSENEN, NCSTN variant)" to GO:0070765
  * Added general dbxref CORUM:466 to synonym gamma-secretase complex (APH1A, PSEN1, PSENEN, NCSTN variant) of GO:0070765
  * Added general dbxref CORUM:43 to synonym gamma-secretase complex (APH1A, PSEN1, PSENEN, NCSTN variant) of GO:0070765
  * Added general dbxref CORUM:2891 to synonym gamma-secretase complex (APH1A, PSEN1, PSENEN, NCSTN variant) of GO:0070765
  * Added general dbxref CORUM:130 to synonym gamma-secretase complex (APH1A, PSEN1, PSENEN, NCSTN variant) of GO:0070765
  * Added general dbxref CORUM:45 to synonym gamma-secretase complex (APH1A, PSEN1, PSENEN, NCSTN variant) of GO:0070765
  * Changed synonym scope of GO:0070765 from "Related" to "Narrow"
  * Added synonym "gamma-secretase complex (APH1A, PSEN2, PSENEN, NCSTN)" to GO:0070765
  * Added general dbxref CORUM:468 to synonym gamma-secretase complex (APH1A, PSEN2, PSENEN, NCSTN) of GO:0070765
  * Changed synonym scope of GO:0070765 from "Related" to "Narrow"
  * Added synonym "gamma-secretase complex (APH1B, PSEN1, PSENEN, NCSTN)" to GO:0070765
  * Added general dbxref CORUM:3128 to synonym gamma-secretase complex (APH1B, PSEN1, PSENEN, NCSTN) of GO:0070765
  * Added synonym "gamma-secretase complex (APH1B, PSEN2, PSENEN, NCSTN)" to GO:0070765
  * Added general dbxref CORUM:467 to synonym gamma-secretase complex (APH1B, PSEN2, PSENEN, NCSTN) of GO:0070765
  * Changed synonym scope of GO:0070765 from "Related" to "Narrow"
  * Copied GO:0070765 to GO:0044459 with type OBO_REL:is_a
  * Copied GO:0070765 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070765
* Populated new object GO:0070766 (macro)
  * Changed name of GO:0070766 from "<new term>" to "endobrevin-synaptobrevin 2-alpha-SNAP-NSF-syntaxin-4 complex"
  * Set definition of GO:0070766 to "A SNARE complex that contains endobrevin (VAMP8),  synaptobrevin 2 (VAMP2), alpha-SNAP, NSF, and syntaxin 4 (or orthologs thereof)."
  * Added definition dbxref PMID:8973549 to GO:0070766
  * Added synonym "SNARE complex (Stx4, Napa, Vamp3, Nsf, Vamp2)" to GO:0070766
  * Added general dbxref CORUM:1876 to synonym SNARE complex (Stx4, Napa, Vamp3, Nsf, Vamp2) of GO:0070766
  * Changed synonym scope of GO:0070766 from "Related" to "Narrow"
  * Added synonym "Stx4-Napa-Vamp3-Nsf-Vamp2 complex" to GO:0070766
  * Added general dbxref CORUM:1876 to synonym Stx4-Napa-Vamp3-Nsf-Vamp2 complex of GO:0070766
  * Changed synonym scope of GO:0070766 from "Related" to "Narrow"
  * Copied GO:0070766 to GO:0031201 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070766
* Populated new object GO:0070767 (macro)
  * Changed name of GO:0070767 from "<new term>" to "BRCA1-Rad51 complex"
  * Set definition of GO:0070767 to "A protein complex that contains BRCA1 and Rad 51, and is involved in the control of recombination and of genome integrity."
  * Added definition dbxref GOC:mah to GO:0070767
  * Added definition dbxref PMID:9008167 to GO:0070767
  * Copied GO:0070767 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0070767 to GO:0044428 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070767
* Populated new object GO:0070768 (macro)
  * Changed name of GO:0070768 from "<new term>" to "synaptotagmin-synaptobrevin 2-SNAP-25-syntaxin-1a-syntaxin-1b-Unc13 complex"
  * Set definition of GO:0070768 to "A SNARE complex that contains synaptotagmin, synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, and Unc13b (or orthologs thereof)."
  * Added definition dbxref PMID:8999968 to GO:0070768
  * Added synonym "Snap25-Syt1-Unc13b-Vamp2-Stx1b2-Stx1a complex" to GO:0070768
  * Added general dbxref CORUM:1873 to synonym Snap25-Syt1-Unc13b-Vamp2-Stx1b2-Stx1a complex of GO:0070768
  * Changed synonym scope of GO:0070768 from "Related" to "Narrow"
  * Added synonym "SNARE complex (Snap25, Syt1, Unc13b, Vamp2, Stx1b2, Stx1a)" to GO:0070768
  * Added general dbxref CORUM:1873 to synonym SNARE complex (Snap25, Syt1, Unc13b, Vamp2, Stx1b2, Stx1a) of GO:0070768
  * Changed synonym scope of GO:0070768 from "Related" to "Narrow"
  * Copied GO:0070768 to GO:0031201 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070768
* Populated new object GO:0070769 (macro)
  * Changed name of GO:0070769 from "<new term>" to "alphaIIb-beta3 integrin-CIB complex"
  * Set definition of GO:0070769 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to CIB, a protein that binds calcium as well as the lphaIIb-beta3 integrin."
  * Added definition dbxref PMID:9030514 to GO:0070769
  * Added synonym "ITGA2B-ITGB3-CIB1 complex" to GO:0070769
  * Added general dbxref CORUM:2379 to synonym ITGA2B-ITGB3-CIB1 complex of GO:0070769
  * Changed synonym scope of GO:0070769 from "Related" to "Narrow"
  * Copied GO:0070769 to GO:0044459 with type OBO_REL:is_a
  * Copied GO:0070769 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070769
* Populated new object GO:0070770 (macro)
  * Changed name of GO:0070770 from "<new term>" to "alphaIIb-beta3 integrin-CD47-FAK complex"
  * Set definition of GO:0070770 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface antigen CD47 and the kinase FAK."
  * Added definition dbxref PMID:9169439 to GO:0070770
  * Added synonym "ITGA2b-ITGB3-CD47-FAK complex" to GO:0070770
  * Added general dbxref CORUM:2896 to synonym ITGA2b-ITGB3-CD47-FAK complex of GO:0070770
  * Changed synonym scope of GO:0070770 from "Related" to "Narrow"
  * Copied GO:0070770 to GO:0044459 with type OBO_REL:is_a
  * Copied GO:0070770 to GO:0043234 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070770
* Populated new object GO:0070771 (macro)
  * Changed name of GO:0070771 from "<new term>" to "alphaIIb-beta3 integrin-CD47-Src complex"
  * Set definition of GO:0070771 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface antigen CD47 and the kinase c-Src."
  * Added definition dbxref PMID:9169439 to GO:0070771
  * Added synonym "ITGA2b-ITGB3-CD47-SRC complex" to GO:0070771
  * Added general dbxref CORUM:2377 to synonym ITGA2b-ITGB3-CD47-SRC complex of GO:0070771
  * Changed synonym scope of GO:0070771 from "Related" to "Narrow"
  * Copied GO:0070771 to GO:0043234 with type OBO_REL:is_a
  * Copied GO:0070771 to GO:0044459 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070771
* Changed definition of GO:0017087 from "A protein complex that consists of a catalytic alpha subunit (alpha-MPP) and a regulatory beta subunits (beta-MPP), and catalyzes the release of N-terminal targeting peptides from precursor proteins imported into the mitochondrion." to "A protein complex that consists of a catalytic alpha subunit (alpha-MPP) and a regulatory beta subunit (beta-MPP), and catalyzes the release of N-terminal targeting peptides from precursor proteins imported into the mitochondrion."
* Changed name of GO:0070355 from "synaptotagmin-SNAP-25-syntaxin-1a-syntaxin-1b-Rab3a-complexin II complex" to "synaptotagmin-synaptobrevin 2-SNAP-25-syntaxin-1a-syntaxin-1b-Rab3a-complexin II complex"
* Changed definition of GO:0070355 from "A SNARE complex that contains synaptotagmin (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, Rab3a, and complexin II (or orthologs thereof)." to "A SNARE complex that contains synaptotagmin, synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, Rab3a, and complexin II (or orthologs thereof)."
* Changed name of GO:0070356 from "synaptotagmin-SNAP-25-syntaxin-1a-syntaxin-1b-Rab3a complex" to "synaptotagmin-synaptobrevin 2-SNAP-25-syntaxin-1a-syntaxin-1b-Rab3a complex"
* Changed definition of GO:0070356 from "A SNARE complex that contains synaptotagmin (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, and Rab3a (or orthologs thereof)." to "A SNARE complex that contains synaptotagmin, synaptobrevin 2 (VAMP2), SNAP-25, syntaxin 1a, syntaxin1b, and Rab3a (or orthologs thereof)."

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