[Go-diff] GO update 03/13/2009

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.473 by 1.476

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0002136
* Created object of type obo:TERM with id GO:0060422
* Populated new object GO:0002136 (macro)
  * Changed name of GO:0002136 from "<new term>" to "wobble base lysidine biosynthesis"
  * Added comment "Exclusively located at the anticodon wobble position (position 34) of eubacterial and some organellar tRNAIle2. This modification converts the codon specificity from AUG to AUA, and it also converts the aminoacylation specificity of the tRNA from methionine to isoleucine. Requires ATP."
  * Set definition of GO:0002136 to "The process whereby the carbonyl of cytosine at position 34 of a tRNA is post-transcriptionally replaced by lysine."
  * Added definition dbxref PMID:15894617 to GO:0002136
  * Copied GO:0002136 to GO:0002101 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0002136
* Populated new object GO:0060422 (macro)
  * Changed name of GO:0060422 from "<new term>" to "peptidyl-dipeptidase inhibitor activity"
  * Set definition of GO:0060422 to "Stops, prevents or reduces the activity of a peptidyl-dipeptidase. Peptidyl-dipeptidase activity catalyzes the release of C-terminal dipeptides from a polypeptide chain."
  * Added definition dbxref GOC:dph to GO:0060422
  * Added definition dbxref GOC:tb to GO:0060422
  * Copied GO:0060422 to GO:0030414 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0060422
* Copied GO:0005092 to GO:0019003 with type positively_regulates
* Added comment "This term was made obsolete because it represents a molecular function."
* Changed definition of GO:0006510 from "The hydrolysis of a peptide bond or bonds within a protein using energy from the hydrolysis of ATP." to "OBSOLETE. The hydrolysis of a peptide bond or bonds within a protein using energy from the hydrolysis of ATP."
* Removed GO:0006510 from category gosubset_prok
* Deleted GO:0006510 --OBO_REL:is_a--> GO:0006508
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at d01101
* Copied GO:0008191 to GO:0048551 with type OBO_REL:is_a
* Copied GO:0016219 to GO:0019003 with type negatively_regulates
* Deleted synonym "" from GO:0030414
* Changed synonym scope of GO:0030414 from "Exact" to "Related"
* Deleted GO:0042031 --OBO_REL:is_a--> GO:0030414
* Copied GO:0042031 to GO:0060422 with type OBO_REL:is_a