[Go-diff] GO update 03/16/2009

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.476 by 1.478

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010926
* Created object of type obo:TERM with id GO:0010927
* Created object of type obo:TERM with id GO:0070505
* Created object of type obo:TERM with id GO:0070506
* Populated new object GO:0010926 (macro)
  * Changed name of GO:0010926 from "<new term>" to "anatomical structure formation"
  * Set definition of GO:0010926 to "The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structure is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome."
  * Added definition dbxref GOC:dph to GO:0010926
  * Added definition dbxref GOC:tb to GO:0010926
  * Copied GO:0010926 to GO:0008150 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010926
* Populated new object GO:0010927 (macro)
  * Changed name of GO:0010927 from "<new term>" to "cellular component assembly involved in morphogenesis"
  * Set definition of GO:0010927 to "The cellular component assembly that is part of the initial shaping of the component during its developmental progression."
  * Added definition dbxref GOC:dph to GO:0010927
  * Added definition dbxref GOC:tb to GO:0010927
  * Copied GO:0010927 to GO:0048646 with type OBO_REL:is_a
  * Copied GO:0010927 to GO:0022607 with type OBO_REL:is_a
  * Copied GO:0010927 to GO:0032989 with type part_of
  * Assigned namespace "biological_process" to GO:0010927
* Populated new object GO:0070505 (macro)
  * Changed name of GO:0070505 from "<new term>" to "pollen coat"
  * Set definition of GO:0070505 to "A layer of extracellular matrix deposited onto the surface of the pollen wall upon disintegration of the tapetal layer of the anther wall in the late stages of pollen development. The composition of this material is highly heterogeneous and includes waxes, lipid droplets, small aromatic molecules, and proteins. The pollen coat is proposed to have many functions, such as holding pollen in the anther until dispersal, facilitation of pollen dispersal, protection of pollen from water loss and UV radiation, and facilitation of adhesion of pollen to the stigma."
  * Added definition dbxref GOC:mah to GO:0070505
  * Added definition dbxref GOC:rph to GO:0070505
  * Added definition dbxref PMID:12930826 to GO:0070505
  * Added definition dbxref PMID:15012271 to GO:0070505
  * Added synonym "pollenkitt" to GO:0070505
  * Added general dbxref PMID:15012271 to synonym pollenkitt of GO:0070505
  * Changed synonym scope of GO:0070505 from "Related" to "Exact"
  * Added synonym "tryphine" to GO:0070505
  * Added general dbxref PMID:15012271 to synonym tryphine of GO:0070505
  * Changed synonym scope of GO:0070505 from "Related" to "Exact"
  * Copied GO:0070505 to GO:0044420 with type OBO_REL:is_a
  * Assigned namespace "cellular_component" to GO:0070505
* Populated new object GO:0070506 (macro)
  * Changed name of GO:0070506 from "<new term>" to "high-density lipoprotein receptor activity"
  * Set definition of GO:0070506 to "Combining with a high-density lipoprotein to initiate a change in cell activity."
  * Added definition dbxref GOC:rl to GO:0070506
  * Added general dbxref Wikipedia:LDL_receptor to GO:0070506
  * Added synonym "HDL receptor" to GO:0070506
  * Added general dbxref GOC:rl to synonym HDL receptor of GO:0070506
  * Changed synonym scope of GO:0070506 from "Related" to "Exact"
  * Copied GO:0070506 to GO:0030228 with type OBO_REL:is_a
  * Copied GO:0070506 to GO:0008035 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070506
* Changed name of GO:0001675 from "acrosome formation" to "acrosome assembly"
* Added definition dbxref GOC:dph to GO:0001675
* Added definition dbxref GOC:tb to GO:0001675
* Added synonym "acrosome formation" to GO:0001675
* Added general dbxref GOC:tb to synonym acrosome formation of GO:0001675
* Added general dbxref GOC:dph to synonym acrosome formation of GO:0001675
* Changed synonym scope of GO:0001675 from "Related" to "Exact"
* Deleted GO:0001675 --OBO_REL:is_a--> GO:0048646
* Copied GO:0001675 to GO:0010927 with type OBO_REL:is_a
* Deleted GO:0007288 --OBO_REL:is_a--> GO:0022607
* Copied GO:0007288 to GO:0010927 with type OBO_REL:is_a
* Changed name of GO:0007306 from "eggshell chorion formation" to "eggshell chorion assembly"
* Added definition dbxref GOC:dph to GO:0007306
* Added definition dbxref GOC:tb to GO:0007306
* Added synonym "eggshell chorion formation" to GO:0007306
* Added general dbxref GOC:tb to synonym eggshell chorion formation of GO:0007306
* Added general dbxref GOC:dph to synonym eggshell chorion formation of GO:0007306
* Changed synonym scope of GO:0007306 from "Related" to "Exact"
* Deleted GO:0007306 --OBO_REL:is_a--> GO:0048646
* Copied GO:0007306 to GO:0010927 with type OBO_REL:is_a
* Deleted GO:0008302 --OBO_REL:is_a--> GO:0022607
* Changed name of GO:0010208 from "pollen wall formation" to "pollen wall assembly"
* Added synonym "pollen wall formation" to GO:0010208
* Added general dbxref GOC:tb to synonym pollen wall formation of GO:0010208
* Added general dbxref GOC:dph to synonym pollen wall formation of GO:0010208
* Changed synonym scope of GO:0010208 from "Related" to "Exact"
* Deleted GO:0010208 --OBO_REL:is_a--> GO:0048646
* Copied GO:0010208 to GO:0010927 with type OBO_REL:is_a
* Changed name of GO:0019068 from "virus assembly" to "virion assembly"
* Added synonym "virus assembly" to GO:0019068
* Added general dbxref GOC:tb to synonym virus assembly of GO:0019068
* Added general dbxref GOC:dph to synonym virus assembly of GO:0019068
* Changed synonym scope of GO:0019068 from "Related" to "Exact"
* Deleted GO:0019068 --OBO_REL:is_a--> GO:0022607
* Copied GO:0019068 to GO:0010927 with type OBO_REL:is_a
* Changed definition of GO:0022607 from "A cellular process that results in the assembly of a part of the cell." to "A cellular process that results in the assembly of a cellular component."
* Copied GO:0022607 to GO:0010926 with type OBO_REL:is_a
* Deleted GO:0030239 --OBO_REL:is_a--> GO:0022607
* Copied GO:0030239 to GO:0010927 with type OBO_REL:is_a
* Changed name of GO:0032288 from "myelin formation" to "myelin assembly"
* Added definition dbxref GOC:dph to GO:0032288
* Added definition dbxref GOC:tb to GO:0032288
* Added synonym "myelin formation" to GO:0032288
* Added general dbxref GOC:tb to synonym myelin formation of GO:0032288
* Added general dbxref GOC:dph to synonym myelin formation of GO:0032288
* Deleted GO:0032288 --OBO_REL:is_a--> GO:0048646
* Copied GO:0032288 to GO:0010927 with type OBO_REL:is_a
* Changed name of GO:0032989 from "cellular structure morphogenesis" to "cellular component morphogenesis"
* Added definition dbxref GOC:dph to GO:0032989
* Added definition dbxref GOC:tb to GO:0032989
* Added synonym "cellular structure morphogenesis" to GO:0032989
* Added general dbxref GOC:tb to synonym cellular structure morphogenesis of GO:0032989
* Added general dbxref GOC:dph to synonym cellular structure morphogenesis of GO:0032989
* Changed synonym scope of GO:0032989 from "Related" to "Exact"
* Deleted GO:0042244 --OBO_REL:is_a--> GO:0022607
* Copied GO:0042244 to GO:0010927 with type OBO_REL:is_a
* Deleted synonym "micrsopore wall" from GO:0043667
* Added synonym "microspore wall" to GO:0043667
* Changed synonym scope of GO:0043667 from "Related" to "Exact"
* Changed name of GO:0048646 from "anatomical structure formation" to "anatomical structure formation involved in morphogenesis"
* Changed definition of GO:0048646 from "The process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." to "The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome."
* Added definition dbxref GOC:tb to GO:0048646
* Deleted synonym "formation of an anatomical structure" from GO:0048646
* Added synonym "formation of an anatomical structure involved in morphogenesis" to GO:0048646
* Added general dbxref GOC:tb to synonym formation of an anatomical structure involved in morphogenesis of GO:0048646
* Added general dbxref GOC:dph to synonym formation of an anatomical structure involved in morphogenesis of GO:0048646
* Changed synonym scope of GO:0048646 from "Related" to "Exact"
* Copied GO:0048646 to GO:0010926 with type OBO_REL:is_a