[Go-diff] GO update 03/26/2009

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.496 by 1.497

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0070527
* Created object of type obo:TERM with id GO:0070528
* Populated new object GO:0070527 (macro)
  * Changed name of GO:0070527 from "<new term>" to "platelet aggregation"
  * Set definition of GO:0070527 to "The adhesion of one platelet to one or more other platelets via adhesion molecules."
  * Added definition dbxref GOC:vk to GO:0070527
  * Added synonym "blood platelet aggregation" to GO:0070527
  * Added general dbxref CL:0000233 to synonym blood platelet aggregation of GO:0070527
  * Changed synonym scope of GO:0070527 from "Related" to "Exact"
  * Added synonym "thrombocyte aggregation" to GO:0070527
  * Added general dbxref CL:0000233 to synonym thrombocyte aggregation of GO:0070527
  * Copied GO:0070527 to GO:0030168 with type part_of
  * Copied GO:0070527 to GO:0034109 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070527
* Populated new object GO:0070528 (macro)
  * Changed name of GO:0070528 from "<new term>" to "protein kinase C signaling cascade"
  * Set definition of GO:0070528 to "A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound."
  * Added definition dbxref GOC:mah to GO:0070528
  * Added synonym "PKC signaling cascade" to GO:0070528
  * Added general dbxref GOC:mah to synonym PKC signaling cascade of GO:0070528
  * Changed synonym scope of GO:0070528 from "Related" to "Exact"
  * Added synonym "protein kinase C signalling cascade" to GO:0070528
  * Added general dbxref GOC:mah to synonym protein kinase C signalling cascade of GO:0070528
  * Changed synonym scope of GO:0070528 from "Related" to "Exact"
  * Copied GO:0070528 to GO:0007243 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0070528
* Changed name of GO:0003992 from "acetylornithine transaminase activity" to "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity"
* Changed synonym scope of GO:0003992 from "Exact" to "Broad"
* Deleted synonym "N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity" from GO:0003992
* Added synonym "acetylornithine transaminase activity" to GO:0003992
* Added general dbxref EC:2.6.1.11 to synonym acetylornithine transaminase activity of GO:0003992
* Changed synonym scope of GO:0003992 from "Related" to "Broad"
* Changed name of GO:0004069 from "aspartate transaminase activity" to "L-aspartate:2-oxoglutarate aminotransferase activity"
* Changed synonym scope of GO:0004069 from "Exact" to "Broad"
* Changed synonym scope of GO:0004069 from "Exact" to "Broad"
* Changed synonym scope of GO:0004069 from "Exact" to "Broad"
* Changed synonym scope of GO:0004069 from "Exact" to "Broad"
* Changed synonym scope of GO:0004069 from "Exact" to "Broad"
* Deleted synonym "L-aspartate:2-oxoglutarate aminotransferase activity" from GO:0004069
* Changed synonym scope of GO:0004069 from "Exact" to "Broad"
* Changed synonym scope of GO:0004069 from "Exact" to "Related"
* Added synonym "aspartate transaminase activity" to GO:0004069
* Added general dbxref EC:2.6.1.1 to synonym aspartate transaminase activity of GO:0004069
* Changed synonym scope of GO:0004069 from "Related" to "Broad"
* Changed definition of GO:0004108 from "Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA." to "Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the si-face of oxaloacetate; acetyl-CoA thus provides the two carbon atoms of the pro-S carboxymethyl group."
* Added definition dbxref ISBN:0121227073 to GO:0004108
* Changed name of GO:0004648 from "phosphoserine transaminase activity" to "O-phospho-L-serine:2-oxoglutarate aminotransferase activity"
* Deleted synonym "O-phospho-L-serine:2-oxoglutarate aminotransferase activity" from GO:0004648
* Changed synonym scope of GO:0004648 from "Exact" to "Broad"
* Added synonym "phosphoserine transaminase activity" to GO:0004648
* Added general dbxref EC:2.6.1.52 to synonym phosphoserine transaminase activity of GO:0004648
* Changed synonym scope of GO:0004648 from "Related" to "Broad"
* Changed name of GO:0004838 from "tyrosine transaminase activity" to "L-tyrosine:2-oxoglutarate aminotransferase activity"
* Changed synonym scope of GO:0004838 from "Exact" to "Broad"
* Deleted synonym "L-tyrosine:2-oxoglutarate aminotransferase activity" from GO:0004838
* Changed synonym scope of GO:0004838 from "Exact" to "Related"
* Changed synonym scope of GO:0004838 from "Exact" to "Related"
* Changed synonym scope of GO:0004838 from "Exact" to "Related"
* Changed synonym scope of GO:0004838 from "Exact" to "Related"
* Changed synonym scope of GO:0004838 from "Exact" to "Related"
* Changed synonym scope of GO:0004838 from "Exact" to "Broad"
* Added synonym "tyrosine transaminase activity" to GO:0004838
* Added general dbxref EC:2.6.1.5 to synonym tyrosine transaminase activity of GO:0004838
* Changed synonym scope of GO:0004838 from "Related" to "Broad"
* Changed name of GO:0008110 from "histidine transaminase activity" to "L-histidine:2-oxoglutarate aminotransferase activity"
* Changed synonym scope of GO:0008110 from "Exact" to "Broad"
* Deleted synonym "L-histidine:2-oxoglutarate aminotransferase activity" from GO:0008110
* Added synonym "histidine transaminase activity" to GO:0008110
* Added general dbxref EC:2.6.1.38 to synonym histidine transaminase activity of GO:0008110
* Changed synonym scope of GO:0008110 from "Related" to "Broad"
* Changed name of GO:0008793 from "aromatic-amino-acid transaminase activity" to "aromatic-amino-acid:2-oxoglutarate aminotransferase activity"
* Deleted synonym "aromatic-amino-acid:2-oxoglutarate aminotransferase activity" from GO:0008793
* Added synonym "aromatic-amino-acid transaminase activity" to GO:0008793
* Added general dbxref EC:2.6.1.57 to synonym aromatic-amino-acid transaminase activity of GO:0008793
* Changed synonym scope of GO:0008793 from "Related" to "Exact"
* Deleted synonym "undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase activity" from GO:0008955
* Added synonym "undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase activity" to GO:0008955
* Added general dbxref EC:2.4.1.129 to synonym undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase activity of GO:0008955
* Changed synonym scope of GO:0008955 from "Related" to "Exact"
* Added general dbxref Wikipedia:Morphogenesis to GO:0009653
* Added general dbxref Wikipedia:C4_carbon_fixation to GO:0009760
* Added general dbxref Wikipedia:Crassulacean_acid_metabolism to GO:0009761
* Added general dbxref Wikipedia:Embryogenesis to GO:0009790
* Added general dbxref Wikipedia:Flavonoid to GO:0009813
* Added general dbxref Wikipedia:Ripening to GO:0009835
* Added general dbxref Wikipedia:Abscission to GO:0009838
* Added general dbxref Wikipedia:Germination#Seed_germination to GO:0009845
* Added general dbxref Wikipedia:Photorespiration to GO:0009853
* Added general dbxref Wikipedia:Pollination to GO:0009856
* Added general dbxref Wikipedia:Histogenesis to GO:0009888
* Added general dbxref Wikipedia:Dehiscence_(botany) to GO:0009900
* Added general dbxref Wikipedia:Xanthophyll#Xanthophyll_cycle to GO:0010028
* Added general dbxref Wikipedia:Transpiration to GO:0010148
* Added general dbxref Wikipedia:Senescence to GO:0010149
* Added general dbxref Wikipedia:Seed#Seed_dormancy_and_protection to GO:0010162
* Added general dbxref Wikipedia:Photoinhibition to GO:0010205
* Added general dbxref Wikipedia:Hydrotropism to GO:0010274
* Added general dbxref Wikipedia:Gene_expression to GO:0010467
* Added general dbxref Wikipedia:Regulation_of_gene_expression to GO:0010468
* Added general dbxref Wikipedia:Programmed_cell_death to GO:0012501
* Changed synonym scope of GO:0014076 from "Exact" to "Related"
* Added general dbxref Wikipedia:Muscle_atrophy to GO:0014889
* Added general dbxref Wikipedia:Muscle_hypertrophy to GO:0014896
* Added general dbxref Wikipedia:Methanogenesis to GO:0015948
* Added general dbxref Wikipedia:Stringent_response to GO:0015968
* Added general dbxref Wikipedia:Lithotrophy to GO:0015975
* Added synonym "lithotrophy" to GO:0015975
* Added general dbxref Wikipedia:Lithotrophy to synonym lithotrophy of GO:0015975
* Changed synonym scope of GO:0015975 from "Related" to "Exact"
* Added general dbxref Wikipedia:Autotrophy to GO:0015977
* Added general dbxref Wikipedia:Heterotroph to GO:0015978
* Added general dbxref Wikipedia:Photosynthesis to GO:0015979
* Added general dbxref Wikipedia:Viral_life_cycle to GO:0016032
* Added general dbxref Wikipedia:Lipid_catabolism to GO:0016042
* Added general dbxref Wikipedia:Type_I_hypersensitivity to GO:0016068
* Added general dbxref Wikipedia:Terpenoid to GO:0016114
* Added general dbxref Wikipedia:RNA_interference to GO:0016246
* Added general dbxref Wikipedia:Death to GO:0016265
* Added general dbxref Wikipedia:Phosphorylation to GO:0016310
* Added general dbxref Wikipedia:Dephosphorylation to GO:0016311
* Added general dbxref Wikipedia:Post_transcriptional_gene_silencing to GO:0016441
* Added general dbxref Wikipedia:Gene_silencing to GO:0016458
* Added general dbxref Wikipedia:Cell_migration to GO:0016477
* Added general dbxref Wikipedia:Histone#Histone_modifications_in_chromatin_regulation to GO:0016570
* Added general dbxref Wikipedia:Histone_methylation to GO:0016571
* Added general dbxref Wikipedia:SUMO_protein to GO:0016925
* Added general dbxref Wikipedia:Drug_metabolism to GO:0017144
* Changed definition of GO:0018605 from "Catalysis of the reaction: toluene-4-sulfonate + NADH + H+ + O2 = NAD+ + HSO3(-) + 4-methylcatechol." to "Catalysis of the reaction: 2-aminobenzenesulfonate + NADH + H+ + O2 = NAD+ + NH3 + 3-sulfocatechol."
* Deleted definition dbxref UM-BBD_enzymeID:e0241 from GO:0018605
* Added definition dbxref PMID:10589735 to GO:0018605
* Added general dbxref Wikipedia:Apolysis to GO:0018989
* Added general dbxref Wikipedia:Oviposition to GO:0018991
* Added general dbxref Wikipedia:Viral_transformation to GO:0019087
* Added general dbxref Wikipedia:Proprioception to GO:0019230
* Added general dbxref Wikipedia:Nociception to GO:0019233
* Added general dbxref Wikipedia:Anammox to GO:0019331
* Added general dbxref Wikipedia:Transsulfuration_pathway to GO:0019346
* Added general dbxref Wikipedia:Arachidonic_acid to GO:0019369
* Added general dbxref Wikipedia:Leukotriene#Leukotriene_synthesis to GO:0019370
* Added general dbxref Wikipedia:Beta-alanine to GO:0019482
* Added general dbxref Wikipedia:Protein_metabolism to GO:0019538
* Added general dbxref Wikipedia:Glucuronic_acid to GO:0019585
* Added general dbxref Wikipedia:Butanediol_fermentation to GO:0019650
* Added general dbxref Wikipedia:Ethanol_fermentation to GO:0019655
* Added general dbxref Wikipedia:Lactic_acid_fermentation to GO:0019659
* Added general dbxref Wikipedia:Mixed_acid_fermentation to GO:0019664
* Added general dbxref Wikipedia:Photolysis#Photolysis_in_photosynthesis to GO:0019684
* Added general dbxref Wikipedia:Calcium_signaling to GO:0019722
* Added general dbxref Wikipedia:Secondary_metabolism to GO:0019748
* Added general dbxref Wikipedia:Cytolysis to GO:0019835
* Added general dbxref Wikipedia:Antigen_presentation to GO:0019882
* Added general dbxref Wikipedia:Sexual_reproduction to GO:0019953
* Added general dbxref Wikipedia:Asexual_reproduction to GO:0019954
* Added general dbxref Wikipedia:Rosetting to GO:0020013
* Added general dbxref Wikipedia:Protozoal_merogony to GO:0020014
* Added general dbxref Wikipedia:Antigenic_variation to GO:0020033
* Added general dbxref GOC:mah to synonym spinal cord dorsal-ventral patterning of GO:0021513
* Added general dbxref Wikipedia:parahippocampal_gyrus to GO:0021770
* Deleted synonym "hippocampal gyrus" from GO:0021770
* Added synonym "hippocampal gyrus development" to GO:0021770
* Added general dbxref GOC:dgh to synonym hippocampal gyrus development of GO:0021770
* Changed synonym scope of GO:0021770 from "Related" to "Exact"
* Added general dbxref GOC:mah to synonym forebrain dorsal-ventral pattern formation of GO:0021798
* Added general dbxref Wikipedia:Neurogenesis to GO:0022008
* Added general dbxref Wikipedia:Electron_transport_chain to GO:0022900
* Added general dbxref Wikipedia:Electron_transfer to GO:0022904
* Added general dbxref Wikipedia:Lysogenic_cycle to GO:0030069
* Added general dbxref Wikipedia:Haematopoiesis to GO:0030097
* Added general dbxref Wikipedia:Diuresis to GO:0030146
* Added general dbxref Wikipedia:Natriuresis to GO:0030147
* Added general dbxref Wikipedia:Cellular_differentiation to GO:0030154
* Added general dbxref Wikipedia:Protein_catabolism to GO:0030163
* Added general dbxref Wikipedia:Denaturation#Protein_denaturation to GO:0030164
* Added general dbxref Wikipedia:Erythropoiesis to GO:0030218
* Added general dbxref Wikipedia:Pyknosis to GO:0030263
* Added general dbxref Wikipedia:Sperm_motility to GO:0030317
* Added general dbxref Wikipedia:Defecation to GO:0030421
* Added general dbxref Wikipedia:Sleep to GO:0030431
* Added general dbxref Wikipedia:Peristalsis to GO:0030432
* Added general dbxref Wikipedia:Sporogenesis to GO:0030435
* Added general dbxref Wikipedia:Ovulation to GO:0030728
* Added general dbxref Wikipedia:Protein_splicing to GO:0030908
* Added general dbxref Wikipedia:Pancreas to GO:0031016
* Added general dbxref Wikipedia:Regeneration_(biology) to GO:0031099
* Added general dbxref Wikipedia:Biomineralisation to GO:0031214
* Added general dbxref Wikipedia:Attenuator_(genetics) to GO:0031555
* Added general dbxref Wikipedia:Spindle_checkpoint to GO:0031577
* Added general dbxref Wikipedia:Transposon to GO:0032196
* Added general dbxref Wikipedia:Transposon##Class_I:_Retrotransposons to GO:0032197
* Added general dbxref Wikipedia:Methylation to GO:0032259
* Added general dbxref Wikipedia:Clavulanic_acid to GO:0033050
* Changed name of GO:0033094 from "putrescine aminotransferase activity" to "butane-1,4-diamine:2-oxoglutarate aminotransferase activity"
* Deleted synonym "butane-1,4-diamine:2-oxoglutarate aminotransferase activity" from GO:0033094
* Changed synonym scope of GO:0033094 from "Exact" to "Related"
* Changed synonym scope of GO:0033094 from "Exact" to "Broad"
* Added synonym "putrescine aminotransferase activity" to GO:0033094
* Added general dbxref EC:2.6.1.82 to synonym putrescine aminotransferase activity of GO:0033094
* Changed synonym scope of GO:0033094 from "Related" to "Broad"
* Added general dbxref Wikipedia:V(D)J_recombination to GO:0033151
* Added general dbxref Wikipedia:Pupa to GO:0035074
* Added general dbxref Wikipedia:Operant_conditioning to GO:0035106
* Added general dbxref Wikipedia:Social_behavior to GO:0035176
* Added general dbxref Wikipedia:Segmentation_(biology) to GO:0035282
* Added general dbxref Wikipedia:Wound_healing to GO:0042060
* Added general dbxref Wikipedia:Intraflagellar_transport to GO:0042073
* Added general dbxref Wikipedia:Ribosome_biogenesis to GO:0042254
* Added general dbxref Wikipedia:Vocal_learning to GO:0042297
* Added general dbxref Wikipedia:Vasoconstriction to GO:0042310
* Added general dbxref Wikipedia:Vasodilation to GO:0042311
* Added general dbxref Wikipedia:Taxis to GO:0042330
* Added general dbxref Wikipedia:Phototaxis to GO:0042331
* Added general dbxref Wikipedia:Norepinephrine#Degradation to GO:0042422
* Added general dbxref Wikipedia:Catecholamines to GO:0042423
* Added general dbxref Wikipedia:Serotonin to GO:0042427
* Added general dbxref Wikipedia:Kinesis to GO:0042465
* Added general dbxref Wikipedia:Chemokinesis to GO:0042466
* Added general dbxref Wikipedia:Odontogenesis to GO:0042476
* Added general dbxref Wikipedia:Myelin to GO:0042552
* Added general dbxref Wikipedia:Retinol to GO:0042572
* Added general dbxref Wikipedia:Thelarche to GO:0042695
* Added general dbxref Wikipedia:Menarche to GO:0042696
* Added general dbxref Wikipedia:Menopause to GO:0042697
* Added general dbxref Wikipedia:Menstruation to GO:0042703
* Added general dbxref Wikipedia:Fibrinolysis to GO:0042730
* Added general dbxref Wikipedia:Hibernation to GO:0042750
* Added general dbxref Wikipedia:Estivation to GO:0042751
* Added general dbxref Wikipedia:Thermotaxis to GO:0043052
* Added general dbxref Wikipedia:Erection#Penile_erection to GO:0043084
* Added general dbxref Wikipedia:Binary_fission to GO:0043093
* Added general dbxref Wikipedia:Nucleotide_salvage to GO:0043173
* Added general dbxref Wikipedia:Anoikis to GO:0043276
* Added general dbxref Wikipedia:Malolactic_fermentation to GO:0043464
* Added general dbxref Wikipedia:Malate-aspartate_shuttle to GO:0043490
* Added general dbxref Wikipedia:Neuroprotection to GO:0043526
* Added general dbxref Wikipedia:Chemotropism to GO:0043577
* Added general dbxref Wikipedia:Linoleic_acid to GO:0043651
* Added general dbxref Wikipedia:Posttranslational_modification to GO:0043687
* Added general dbxref Wikipedia:Cellular_differentiation#Dedifferentiation to GO:0043696
* Added general dbxref Wikipedia:Spore to GO:0043934
* Changed name of GO:0047801 from "cysteine transaminase activity" to "L-cysteine:2-oxoglutarate aminotransferase activity"
* Changed synonym scope of GO:0047801 from "Exact" to "Broad"
* Changed synonym scope of GO:0047801 from "Exact" to "Broad"
* Deleted synonym "L-cysteine:2-oxoglutarate aminotransferase activity" from GO:0047801
* Added synonym "cysteine transaminase activity" to GO:0047801
* Added general dbxref EC:2.6.1.3 to synonym cysteine transaminase activity of GO:0047801
* Changed synonym scope of GO:0047801 from "Related" to "Broad"
* Changed name of GO:0047810 from "D-alanine transaminase activity" to "D-alanine:2-oxoglutarate aminotransferase activity"
* Deleted synonym "D-alanine:2-oxoglutarate aminotransferase activity" from GO:0047810
* Changed synonym scope of GO:0047810 from "Exact" to "Broad"
* Added synonym "D-alanine transaminase activity" to GO:0047810
* Added general dbxref EC:2.6.1.21 to synonym D-alanine transaminase activity of GO:0047810
* Changed synonym scope of GO:0047810 from "Related" to "Broad"
* Changed name of GO:0047958 from "glycine transaminase activity" to "glycine:2-oxoglutarate aminotransferase activity"
* Changed synonym scope of GO:0047958 from "Exact" to "Broad"
* Deleted synonym "glycine:2-oxoglutarate aminotransferase activity" from GO:0047958
* Added synonym "glycine transaminase activity" to GO:0047958
* Added general dbxref EC:2.6.1.4 to synonym glycine transaminase activity of GO:0047958
* Changed synonym scope of GO:0047958 from "Related" to "Broad"
* Changed name of GO:0050048 from "leucine transaminase activity" to "L-leucine:2-oxoglutarate aminotransferase activity"
* Changed synonym scope of GO:0050048 from "Exact" to "Broad"
* Deleted synonym "L-leucine:2-oxoglutarate aminotransferase activity" from GO:0050048
* Changed synonym scope of GO:0050048 from "Exact" to "Broad"
* Added synonym "leucine transaminase activity" to GO:0050048
* Added general dbxref EC:2.6.1.6 to synonym leucine transaminase activity of GO:0050048
* Changed synonym scope of GO:0050048 from "Related" to "Broad"
* Changed name of GO:0050362 from "tryptophan transaminase activity" to "L-tryptophan:2-oxoglutarate aminotransferase activity"
* Changed synonym scope of GO:0050362 from "Exact" to "Related"
* Changed synonym scope of GO:0050362 from "Exact" to "Broad"
* Changed synonym scope of GO:0050362 from "Exact" to "Broad"
* Deleted synonym "L-tryptophan:2-oxoglutarate aminotransferase activity" from GO:0050362
* Added synonym "tryptophan transaminase activity" to GO:0050362
* Added general dbxref EC:2.6.1.27 to synonym tryptophan transaminase activity of GO:0050362
* Changed synonym scope of GO:0050362 from "Related" to "Broad"
* Changed definition of GO:0050450 from "Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA ." to "Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the re-face of oxaloacetate; acetyl-CoA provides the two carbon atoms of the pro-R carboxymethyl group."
* Deleted definition dbxref MetaCyc:CITRATE-(RE)-SYNTHASE-RXN from GO:0050450
* Added definition dbxref ISBN:0121227073 to GO:0050450
* Added definition dbxref MetaCyc:CITRATE-RE-SYNTHASE-RXN to GO:0050450
* Deleted general dbxref MetaCyc:CITRATE-(RE)-SYNTHASE-RXN from GO:0050450
* Added general dbxref MetaCyc:CITRATE-RE-SYNTHASE-RXN to GO:0050450
* Copied GO:0070487 to GO:0070527 with type OBO_REL:is_a
* Copied GO:0070488 to GO:0070527 with type OBO_REL:is_a
* Copied GO:0070489 to GO:0070527 with type OBO_REL:is_a