[Go-diff] GO update 03/27/2009

[Remote CVS for Gene Ontology]

OBODIFF of gene_ontology_write.obo version 1.497 by 1.499

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010943
* Created object of type obo:TERM with id GO:0010944
* Created object of type obo:TERM with id GO:0070529
* Populated new object GO:0010943 (macro)
  * Changed name of GO:0010943 from "<new term>" to "NADPH pyrophosphatase activity"
  * Set definition of GO:0010943 to "Catalysis of the reaction: NADPH + H20 = NMNH + ADP."
  * Added definition dbxref GOC:tb to GO:0010943
  * Copied GO:0010943 to GO:0004551 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0010943
* Populated new object GO:0010944 (macro)
  * Changed name of GO:0010944 from "<new term>" to "negative regulation of transcription by competitive promoter binding"
  * Set definition of GO:0010944 to "x."
  * Added definition dbxref GOC:tb to GO:0010944
  * Copied GO:0010944 to GO:0045892 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010944
* Populated new object GO:0070529 (macro)
  * Changed name of GO:0070529 from "<new term>" to "L-tryptophan aminotransferase activity"
  * Set definition of GO:0070529 to "Catalysis of the transfer of an amino group from L-tryptophan to an acceptor, usually a 2-oxo acid."
  * Added definition dbxref GOC:mah to GO:0070529
  * Copied GO:0070529 to GO:0008483 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070529
* Changed synonym scope of GO:0000210 from "Exact" to "Broad"
* Added comment "This term was made obsolete because it represents a regulator of an obsolete molecular function."
* Changed definition of GO:0008605 from "Modulation of the activity of the enzyme protein kinase CK2." to "OBSOLETE. Modulation of the activity of the enzyme protein kinase CK2."
* Deleted GO:0008605 --OBO_REL:is_a--> GO:0019887
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1fc15f2
* Deleted GO:0008784 --OBO_REL:is_a--> GO:0016855
* Copied GO:0008784 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0008837 --OBO_REL:is_a--> GO:0016855
* Copied GO:0008837 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0008881 --OBO_REL:is_a--> GO:0016855
* Copied GO:0008881 to GO:0047661 with type OBO_REL:is_a
* Added comment "This term was made obsolete because it represents a regulator of an obsolete molecular function."
* Changed definition of GO:0016484 from "Required for the maturation and activation of proprotein convertase 2." to "OBSOLETE. Required for the maturation and activation of proprotein convertase 2."
* Deleted GO:0016484 --OBO_REL:is_a--> GO:0008047
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 104e6c3
* Added comment "This term was made obsolete because it represents a regulator of non-existent molecular function."
* Changed definition of GO:0017114 from "Stops, prevents or reduces the activity of a protease by a wide-spectrum protease inhibitor. A wide-spectrum protease inhibitor is a protein having a peptide stretch which contains specific cleavage sites for different proteinases enabling inhibition of all four classes of proteinases by formation of a covalent bond between the inhibitor and the protease." to "OBSOLETE. Stops, prevents or reduces the activity of a protease by a wide-spectrum protease inhibitor. A wide-spectrum protease inhibitor is a protein having a peptide stretch which contains specific cleavage sites for different proteinases enabling inhibition of all four classes of proteinases by formation of a covalent bond between the inhibitor and the protease."
* Deleted GO:0017114 --OBO_REL:is_a--> GO:0030414
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at ca213f
* Deleted GO:0018111 --OBO_REL:is_a--> GO:0016855
* Copied GO:0018111 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0018112 --OBO_REL:is_a--> GO:0016855
* Copied GO:0018112 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0018113 --OBO_REL:is_a--> GO:0016855
* Copied GO:0018113 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0018114 --OBO_REL:is_a--> GO:0016855
* Copied GO:0018114 to GO:0047661 with type OBO_REL:is_a
* Added general dbxref GOC:mah to synonym spinal cord dorsal-ventral patterning of GO:0021513
* Added general dbxref GOC:mah to synonym forebrain dorsal-ventral pattern formation of GO:0021798
* Added comment "This term was made obsolete because it represents a regulator of a non-existent molecular function."
* Changed definition of GO:0030161 from "Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue." to "OBSOLETE. Stops, prevents or reduces the activity of the enzyme calpain, which catalyzes of the preferential cleavage of Tyr-Xaa, Met-Xaa or Arg-Xaa with Leu or Val as the P2 residue."
* Deleted GO:0030161 --OBO_REL:is_a--> GO:0010859
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 4caf80
* Added comment "This term was made obsolete because it represents a regulator of an obsolete molecular function."
* Changed definition of GO:0030304 from "Stops, prevents or reduces the activity of the serine endopeptidase trypsin." to "OBSOLETE. Stops, prevents or reduces the activity of the serine endopeptidase trypsin."
* Deleted GO:0030304 --OBO_REL:is_a--> GO:0004867
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 9628c3
* Deleted GO:0030378 --OBO_REL:is_a--> GO:0016855
* Copied GO:0030378 to GO:0047661 with type OBO_REL:is_a
* Added comment "This term was made obsolete because it represents a regulator of an obsolete molecular function."
* Changed definition of GO:0030415 from "Stops, prevents or reduces the activity of the enzyme carboxypeptidase A." to "OBSOLETE. Stops, prevents or reduces the activity of the enzyme carboxypeptidase A."
* Deleted GO:0030415 --OBO_REL:is_a--> GO:0030414
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 4e3d62
* Added comment "This term was made obsolete because it represents a regulator of an obsolete molecular function."
* Changed definition of GO:0030567 from "Increases the rate of proteolysis catalyzed by thrombin." to "OBSOLETE. Increases the rate of proteolysis catalyzed by thrombin."
* Deleted GO:0030567 --OBO_REL:is_a--> GO:0016504
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at a01d4c
* Added comment "This term was made obsolete because it represents a regulator of an obsolete molecular function."
* Changed definition of GO:0030568 from "Stops, prevents or reduces the activity of the serine endopeptidase plasmin." to "OBSOLETE. Stops, prevents or reduces the activity of the serine endopeptidase plasmin."
* Deleted GO:0030568 --OBO_REL:is_a--> GO:0004867
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1e39b29
* Added comment "This term was made obsolete because it represents a regulator of an obsolete molecular function term."
* Changed definition of GO:0030569 from "Stops, prevents or reduces the activity of the serine endopeptidase chymotrypsin." to "OBSOLETE. Stops, prevents or reduces the activity of the serine endopeptidase chymotrypsin."
* Deleted GO:0030569 --OBO_REL:is_a--> GO:0004867
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1dfe150
* Added comment "This term was made obsolete because it represents a regulator of a non-existent molecular function term."
* Changed definition of GO:0042031 from "Stops, prevents or reduces the activity of angiotensin-converting enzyme, thereby preventing the synthesis of angiotensin II from its precursor, angiotensin I." to "OBSOLETE. Stops, prevents or reduces the activity of angiotensin-converting enzyme, thereby preventing the synthesis of angiotensin II from its precursor, angiotensin I."
* Deleted GO:0042031 --OBO_REL:is_a--> GO:0060422
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 141817d
* Deleted GO:0047462 --OBO_REL:is_a--> GO:0016855
* Copied GO:0047462 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0047580 --OBO_REL:is_a--> GO:0016855
* Copied GO:0047580 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0047679 --OBO_REL:is_a--> GO:0016855
* Copied GO:0047679 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0047689 --OBO_REL:is_a--> GO:0016855
* Copied GO:0047689 to GO:0047661 with type OBO_REL:is_a
* Deleted GO:0050157 --OBO_REL:is_a--> GO:0016855
* Copied GO:0050157 to GO:0047661 with type OBO_REL:is_a
* Changed synonym scope of GO:0050362 from "Exact" to "Related"
* Changed synonym scope of GO:0050362 from "Exact" to "Related"
* Deleted GO:0050362 --OBO_REL:is_a--> GO:0008483
* Copied GO:0050362 to GO:0070529 with type OBO_REL:is_a