[Go-diff] GO update 03/31/2009

Tue Mar 31 21:30:48 PDT 2009

OBODIFF of gene_ontology_write.obo version 1.503 by 1.505

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060465
* Created object of type obo:TERM with id GO:0070538
* Created object of type obo:TERM with id GO:0070539
* Created object of type obo:TERM with id GO:0070540
* Populated new object GO:0060465 (macro)
  * Changed name of GO:0060465 from "<new term>" to "pharynx development"
  * Set definition of GO:0060465 to "The biological process whose specific outcome is the progression of a pharynx from an initial condition to its mature state. The pharynx is the part of the digestive system immediately posterior to the mouth."
  * Added definition dbxref GOC:dph to GO:0060465
  * Added definition dbxref GOC:rk to GO:0060465
  * Added synonym "pharyngeal development" to GO:0060465
  * Copied GO:0060465 to GO:0048856 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060465
* Populated new object GO:0070538 (macro)
  * Changed name of GO:0070538 from "<new term>" to "oleic acid binding"
  * Set definition of GO:0070538 to "Interacting selectively with oleic acid, the 18-carbon monounsaturated fatty acid (9Z)-octadec-9-enoic acid."
  * Added definition dbxref ChEBI:16196 to GO:0070538
  * Added definition dbxref GOC:lp to GO:0070538
  * Added definition dbxref GOC:mah to GO:0070538
  * Copied GO:0070538 to GO:0005504 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070538
* Populated new object GO:0070539 (macro)
  * Changed name of GO:0070539 from "<new term>" to "linoleic acid binding"
  * Set definition of GO:0070539 to "Interacting selectively with linoleic acid, the 18-carbon unsaturated fatty acid (9Z,12Z)-octadeca-9,12-dienoic acid."
  * Added definition dbxref ChEBI:17351 to GO:0070539
  * Added definition dbxref GOC:lp to GO:0070539
  * Added definition dbxref GOC:mah to GO:0070539
  * Copied GO:0070539 to GO:0005504 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070539
* Populated new object GO:0070540 (macro)
  * Changed name of GO:0070540 from "<new term>" to "stearic acid binding"
  * Set definition of GO:0070540 to "Interacting selectively with stearic acid, the 18-carbon saturated fatty acid octadecanoic acid."
  * Added definition dbxref ChEBI:28842 to GO:0070540
  * Added definition dbxref GOC:lp to GO:0070540
  * Added definition dbxref GOC:mah to GO:0070540
  * Copied GO:0070540 to GO:0005504 with type OBO_REL:is_a
  * Assigned namespace "molecular_function" to GO:0070540
* Changed definition of GO:0000913 from "The process of marking the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation." to "The aggregation, arrangement and bonding together of a set of components to form the preprophase band, a dense band of microtubules that marks the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation."
* Added definition dbxref GOC:mah to GO:0000913
* Added synonym "preprophase band assembly" to GO:0000913
* Added general dbxref GOC:mah to synonym preprophase band assembly of GO:0000913
* Changed synonym scope of GO:0000913 from "Related" to "Exact"
* Copied GO:0000913 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0001325 to GO:0010926 with type OBO_REL:is_a
* Added synonym "lipid raft assembly" to GO:0001765
* Added general dbxref GOC:mah to synonym lipid raft assembly of GO:0001765
* Changed synonym scope of GO:0001765 from "Related" to "Exact"
* Added synonym "membrane raft assembly" to GO:0001765
* Added general dbxref GOC:mah to synonym membrane raft assembly of GO:0001765
* Changed synonym scope of GO:0001765 from "Related" to "Exact"
* Copied GO:0001765 to GO:0022607 with type OBO_REL:is_a
* Added synonym "phagolysosome assembly" to GO:0001845
* Added general dbxref GOC:mah to synonym phagolysosome assembly of GO:0001845
* Changed synonym scope of GO:0001845 from "Related" to "Exact"
* Copied GO:0001845 to GO:0022607 with type OBO_REL:is_a
* Deleted GO:0006622 --OBO_REL:is_a--> GO:0006605
* Copied GO:0006622 to GO:0006623 with type OBO_REL:is_a
* Copied GO:0006999 to GO:0043933 with type OBO_REL:is_a
* Copied GO:0007416 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0009574 to GO:0044430 with type OBO_REL:is_a
* Copied GO:0009574 to GO:0015630 with type part_of
* Deleted GO:0009663 --OBO_REL:is_a--> GO:0007028
* Copied GO:0009663 to GO:0045216 with type OBO_REL:is_a
* Copied GO:0009665 to GO:0048308 with type OBO_REL:is_a
* Copied GO:0009992 to GO:0055082 with type OBO_REL:is_a
* Copied GO:0019069 to GO:0010927 with type OBO_REL:is_a
* Added general dbxref GOC:mah to synonym spinal cord dorsal-ventral patterning of GO:0021513
* Added general dbxref GOC:mah to synonym forebrain dorsal-ventral pattern formation of GO:0021798
* Copied GO:0022617 to GO:0022411 with type OBO_REL:is_a
* Copied GO:0030031 to GO:0022607 with type OBO_REL:is_a
* Added comment "This term was made obsolete because no known receptor binds apolipoprotein E; instead, receptors bind holo-lipoprotein E (apolipoprotein E + bound lipid)."
* Changed definition of GO:0030227 from "Combining with apolipoprotein E to initiate a change in cell activity." to "OBSOLETE. Combining with apolipoprotein E to initiate a change in cell activity."
* Deleted GO:0030227 --OBO_REL:is_a--> GO:0034187
* Deleted GO:0030227 --OBO_REL:is_a--> GO:0030226
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 135e617
* Added synonym "apolipoprotein E receptor activity" to GO:0030229
* Added general dbxref GOC:rl to synonym apolipoprotein E receptor activity of GO:0030229
* Copied GO:0030474 to GO:0022607 with type OBO_REL:is_a
* Copied GO:0030994 to GO:0022411 with type OBO_REL:is_a
* Copied GO:0033298 to GO:0016050 with type OBO_REL:is_a
* Deleted GO:0033502 --OBO_REL:is_a--> GO:0042593
* Copied GO:0033502 to GO:0033501 with type OBO_REL:is_a
* Added comment "Note that this term is to be used only to annotate gene products that bind to lipid-free APOA1. For receptors that bind lipid-associated apolipoproteins (plasma lipoprotein particles), consider annotating to 'lipoprotein receptor activity ; GO:0030228' or its child terms."
* Deleted GO:0034620 --OBO_REL:is_a--> GO:0051716
* Copied GO:0034620 to GO:0033554 with type OBO_REL:is_a
* Copied GO:0034637 to GO:0044249 with type OBO_REL:is_a
* Copied GO:0034728 to GO:0043933 with type OBO_REL:is_a
* Copied GO:0043282 to GO:0060465 with type part_of
* Copied GO:0043482 to GO:0051716 with type OBO_REL:is_a
* Copied GO:0044247 to GO:0034962 with type OBO_REL:is_a
* Added comment "This term was made obsolete because no known receptor binds apolipoprotein E; instead, receptors bind holo-lipoprotein E (apolipoprotein E + bound lipid)."
* Changed definition of GO:0050749 from "Interacting selectively with an apolipoprotein E receptor." to "OBSOLETE. Interacting selectively with an apolipoprotein E receptor."
* Deleted GO:0050749 --OBO_REL:is_a--> GO:0034190
* Deleted GO:0050749 --OBO_REL:is_a--> GO:0050750
* org.geneontology.oboedit.datamodel.history.ObsoleteObjectHistoryItem at 1950731
* Copied GO:0051383 to GO:0043933 with type OBO_REL:is_a
* Copied GO:0051878 to GO:0022607 with type OBO_REL:is_a
* Deleted GO:0060152 --part_of--> GO:0060151
* Copied GO:0060152 to GO:0060151 with type OBO_REL:is_a
* Added synonym "apolipoprotein E receptor binding" to GO:0070326
* Added general dbxref GOC:rl to synonym apolipoprotein E receptor binding of GO:0070326