[Go-diff] GO update 05/13/2009

Wed May 13 21:30:53 PDT 2009

OBODIFF of gene_ontology_write.obo version 1.608 by 1.609

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060596
* Created object of type obo:TERM with id GO:0060597
* Created object of type obo:TERM with id GO:0060598
* Created object of type obo:TERM with id GO:0060599
* Populated new object GO:0060596 (macro)
  * Changed name of GO:0060596 from "<new term>" to "mammary placode formation"
  * Set definition of GO:0060596 to "The developmental process by which the mammary placode forms. The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper."
  * Added definition dbxref GOC:dph to GO:0060596
  * Added definition dbxref PMID:16168142 to GO:0060596
  * Copied GO:0060596 to GO:0048646 with type OBO_REL:is_a
  * Copied GO:0060596 to GO:0060592 with type part_of
  * Assigned namespace "biological_process" to GO:0060596
* Populated new object GO:0060597 (macro)
  * Changed name of GO:0060597 from "<new term>" to "regulation of transcription from RNA polymerase II promoter involved in mammary gland formation"
  * Set definition of GO:0060597 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the formation of the mammary line, placode or bud."
  * Added definition dbxref GOC:dph to GO:0060597
  * Added definition dbxref PMID:16168142 to GO:0060597
  * Copied GO:0060597 to GO:0006357 with type OBO_REL:is_a
  * Copied GO:0060597 to GO:0060592 with type part_of
  * Assigned namespace "biological_process" to GO:0060597
* Populated new object GO:0060598 (macro)
  * Changed name of GO:0060598 from "<new term>" to "dichotomous subdivision of terminal units involved in mammary gland morphogenesis"
  * Set definition of GO:0060598 to "The process whereby the terminal end of a mammary duct bifurcates."
  * Added definition dbxref GOC:dph to GO:0060598
  * Added definition dbxref PMID:17120154 to GO:0060598
  * Added synonym "primary mammary duct branching " to GO:0060598
  * Added general dbxref GOC:dph to synonym primary mammary duct branching  of GO:0060598
  * Changed synonym scope of GO:0060598 from "Related" to "Exact"
  * Copied GO:0060598 to GO:0002009 with type OBO_REL:is_a
  * Copied GO:0060598 to GO:0060444 with type part_of
  * Assigned namespace "biological_process" to GO:0060598
* Populated new object GO:0060599 (macro)
  * Changed name of GO:0060599 from "<new term>" to "lateral branching involved in mammary gland morphogenesis"
  * Set definition of GO:0060599 to "The process whereby a branch forms along the side of a mammary duct."
  * Added definition dbxref GOC:dph to GO:0060599
  * Added definition dbxref PMID:17120154 to GO:0060599
  * Added synonym "lung duct secondary branching" to GO:0060599
  * Added general dbxref GOC:dph to synonym lung duct secondary branching of GO:0060599
  * Changed synonym scope of GO:0060599 from "Related" to "Exact"
  * Copied GO:0060599 to GO:0001763 with type OBO_REL:is_a
  * Copied GO:0060599 to GO:0002009 with type OBO_REL:is_a
  * Copied GO:0060599 to GO:0060444 with type part_of
  * Assigned namespace "biological_process" to GO:0060599
* Copied GO:0001727 to GO:0046834 with type part_of
* Copied GO:0003921 to GO:0006177 with type part_of
* Copied GO:0004124 to GO:0019344 with type part_of
* Copied GO:0004363 to GO:0006750 with type part_of
* Copied GO:0004430 to GO:0046854 with type part_of
* Copied GO:0004550 to GO:0006165 with type part_of
* Copied GO:0004705 to GO:0007258 with type part_of
* Copied GO:0004834 to GO:0000162 with type part_of
* Copied GO:0008705 to GO:0009086 with type part_of
* Copied GO:0016301 to GO:0016310 with type part_of
* Copied GO:0016307 to GO:0046854 with type part_of
* Copied GO:0016791 to GO:0016311 with type part_of
* Copied GO:0016847 to GO:0042218 with type part_of
* Copied GO:0018110 to GO:0018109 with type part_of
* Copied GO:0019200 to GO:0046835 with type part_of
* Copied GO:0019201 to GO:0046939 with type part_of
* Copied GO:0019207 to GO:0042325 with type part_of
* Copied GO:0019209 to GO:0042327 with type part_of
* Copied GO:0019210 to GO:0042326 with type part_of
* Changed definition of GO:0030879 from "The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk." to "The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. Its development starts with the formation of the mammary line and ends as the mature gland cycles between nursing and weaning stages."
* Copied GO:0033759 to GO:0051553 with type part_of
* Copied GO:0035004 to GO:0046854 with type part_of
* Copied GO:0035173 to GO:0016572 with type part_of
* Copied GO:0035174 to GO:0018105 with type part_of
* Copied GO:0035184 to GO:0018107 with type part_of
* Copied GO:0045431 to GO:0051555 with type part_of
* Added synonym "nucleoside monophosphate kinase activity" to GO:0050145
* Added general dbxref GOC:tb to synonym nucleoside monophosphate kinase activity of GO:0050145
* Added general dbxref GOC:dph to synonym nucleoside monophosphate kinase activity of GO:0050145
* Changed synonym scope of GO:0050145 from "Related" to "Exact"
* Copied GO:0050145 to GO:0046940 with type part_of
* Copied GO:0050577 to GO:0042350 with type part_of
* Changed name of GO:0060444 from "branching involved in mammary gland morphogeneis" to "branching involved in mammary gland morphogenesis"
* Deleted GO:0060490 --OBO_REL:is_a--> GO:0060441
* Copied GO:0060490 to GO:0060441 with type part_of
* Copied GO:0060490 to GO:0048754 with type OBO_REL:is_a
* Deleted definition dbxref PMID:17120154 from GO:0060595
* Added definition dbxref PMID:16168142 to GO:0060595