[Go-diff] GO update 05/15/2009

Remote CVS for Gene Ontology gocvs at genome.stanford.edu
Fri May 15 21:30:53 PDT 2009 

OBODIFF of gene_ontology_write.obo version 1.610 by 1.613

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0060603
* Created object of type obo:TERM with id GO:0060604
* Created object of type obo:TERM with id GO:0060605
* Created object of type obo:TERM with id GO:0060606
* Created object of type obo:TERM with id GO:0060607
* Created object of type obo:TERM with id GO:0060608
* Created object of type obo:TERM with id GO:0060609
* Created object of type obo:TERM with id GO:0060610
* Created object of type obo:TERM with id GO:0060611
* Created object of type obo:TERM with id GO:0060612
* Created object of type obo:TERM with id GO:0060613
* Populated new object GO:0060603 (macro)
  * Changed name of GO:0060603 from "<new term>" to "mammary gland duct morphogenesis"
  * Set definition of GO:0060603 to "The process by which anatomical structures of the mammary ducts are generated and organized. Mammary ducts are epithelial tubes that transport milk."
  * Added definition dbxref GOC:dph to GO:0060603
  * Added definition dbxref PMID:17120154 to GO:0060603
  * Copied GO:0060603 to GO:0060443 with type part_of
  * Assigned namespace "biological_process" to GO:0060603
* Populated new object GO:0060604 (macro)
  * Changed name of GO:0060604 from "<new term>" to "mammary gland duct cavitation"
  * Set definition of GO:0060604 to "Creation of the central hole of the mammary gland duct by the hollowing out of a solid rod."
  * Added definition dbxref GOC:dph to GO:0060604
  * Added definition dbxref PMID:17120154 to GO:0060604
  * Copied GO:0060604 to GO:0060603 with type part_of
  * Copied GO:0060604 to GO:0060605 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060604
* Populated new object GO:0060605 (macro)
  * Changed name of GO:0060605 from "<new term>" to "lumen cavitation"
  * Set definition of GO:0060605 to "The formation of a lumen by hollowing out a solid rod or cord."
  * Added definition dbxref GOC:dph to GO:0060605
  * Copied GO:0060605 to GO:0035148 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060605
* Populated new object GO:0060606 (macro)
  * Changed name of GO:0060606 from "<new term>" to "sealing an epithelial fold to form a lumen"
  * Set definition of GO:0060606 to "Creation of the central hole of a tube in an anatomical structure by sealing the edges of an epithelial fold."
  * Added definition dbxref GOC:dph to GO:0060606
  * Copied GO:0060606 to GO:0035148 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060606
* Populated new object GO:0060607 (macro)
  * Changed name of GO:0060607 from "<new term>" to "cell-cell adhesion involved in sealing an epithelial fold"
  * Set definition of GO:0060607 to "The attachment of one cell to another cell along the edges of two epithelial folds, giving rise to the lumen of an epithelial tube."
  * Added definition dbxref GOC:dph to GO:0060607
  * Copied GO:0060607 to GO:0016337 with type OBO_REL:is_a
  * Copied GO:0060607 to GO:0060606 with type part_of
  * Assigned namespace "biological_process" to GO:0060607
* Populated new object GO:0060608 (macro)
  * Changed name of GO:0060608 from "<new term>" to "cell-cell adhesion involved in neural tube closure"
  * Set definition of GO:0060608 to "The attachment of one cell to another cell along the edges of two epithelial folds, giving rise to the lumen of the neural tube."
  * Added definition dbxref GOC:dph to GO:0060608
  * Copied GO:0060608 to GO:0001843 with type part_of
  * Copied GO:0060608 to GO:0060607 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060608
* Populated new object GO:0060609 (macro)
  * Changed name of GO:0060609 from "<new term>" to "apoptosis involved in lumen cavitation"
  * Set definition of GO:0060609 to "The process of apoptosis that contributes to the hollowing out of an epithelial rod or cord to form the central hole in a tube."
  * Added definition dbxref GOC:dph to GO:0060609
  * Copied GO:0060609 to GO:0060561 with type OBO_REL:is_a
  * Copied GO:0060609 to GO:0060605 with type part_of
  * Assigned namespace "biological_process" to GO:0060609
* Populated new object GO:0060610 (macro)
  * Changed name of GO:0060610 from "<new term>" to "mammary gland mesenchymal cell differentiation"
  * Set definition of GO:0060610 to "The process whereby a relatively unspecialized cell acquires specialized features of a mammary gland mesenchymal cell. Mammary gland mesenchymal cells form a loosely connected network of cells that surround the mammary ducts."
  * Added definition dbxref GOC:dph to GO:0060610
  * Copied GO:0060610 to GO:0030879 with type part_of
  * Copied GO:0060610 to GO:0048762 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060610
* Populated new object GO:0060611 (macro)
  * Changed name of GO:0060611 from "<new term>" to "mammary gland fat pad development"
  * Set definition of GO:0060611 to "The progression of the mammary gland fat pad over time, from its formation to the mature structure. The mammary fat pads are adipose structures in the gland that are invaded by the mammary ducts."
  * Added definition dbxref GOC:dph to GO:0060611
  * Copied GO:0060611 to GO:0030879 with type part_of
  * Copied GO:0060611 to GO:0060613 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060611
* Populated new object GO:0060612 (macro)
  * Changed name of GO:0060612 from "<new term>" to "adipose tissue development"
  * Set definition of GO:0060612 to "The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat."
  * Added definition dbxref GOC:dph to GO:0060612
  * Copied GO:0060612 to GO:0009888 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060612
* Populated new object GO:0060613 (macro)
  * Changed name of GO:0060613 from "<new term>" to "fat pad development"
  * Set definition of GO:0060613 to "The progression of a fat pad from its initial formation to its mature structure. A fat pad is an accumulation of adipose tissue."
  * Added definition dbxref GOC:dph to GO:0060613
  * Copied GO:0060613 to GO:0060612 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060613
* Deleted GO:0001843 --OBO_REL:is_a--> GO:0016337
* Copied GO:0001843 to GO:0060606 with type OBO_REL:is_a
* Deleted GO:0005979 --OBO_REL:is_a--> GO:0032885
* Copied GO:0006282 to GO:0080135 with type OBO_REL:is_a
* Copied GO:0007595 to GO:0030879 with type part_of
* Copied GO:0010219 to GO:0080134 with type OBO_REL:is_a
* Copied GO:0010504 to GO:0080135 with type OBO_REL:is_a
* Copied GO:0010851 to GO:0031279 with type part_of
* Copied GO:0010921 to GO:0035303 with type OBO_REL:is_a
* Deleted GO:0010962 --OBO_REL:is_a--> GO:0032881
* Copied GO:0010962 to GO:0031326 with type OBO_REL:is_a
* Copied GO:0010962 to GO:0010675 with type OBO_REL:is_a
* Copied GO:0010962 to GO:0032885 with type OBO_REL:is_a
* Deleted GO:0014024 --OBO_REL:is_a--> GO:0035148
* Copied GO:0014024 to GO:0060605 with type OBO_REL:is_a
* Deleted GO:0014027 --OBO_REL:is_a--> GO:0035148
* Copied GO:0014027 to GO:0060605 with type OBO_REL:is_a
* Changed definition of GO:0015457 from "Facilitates transport across one or more biological membranes but do not themselves participate directly in transport. These proteins always function in conjunction with one or more established transport systems. They may provide a function connected with energy coupling to transport, play a structural role in complex formation, serve a biogenic or stability function or function in regulation." to "Facilitates transport across one or more biological membranes but do not themselves participate directly as transporters. These proteins always function in conjunction with one or more established transport systems. They may provide a function connected with energy coupling to transport, play a structural role in complex formation, serve a biogenic or stability function or function in regulation."
* Copied GO:0015457 to GO:0006810 with type part_of
* Copied GO:0016241 to GO:0080135 with type OBO_REL:is_a
* Changed definition of GO:0016249 from "Functions to locate the position of ion channels in the cell." to "Functions to localize the position of ion channels in the cell."
* Copied GO:0016249 to GO:0051179 with type part_of
* Copied GO:0030193 to GO:0080134 with type OBO_REL:is_a
* Copied GO:0030234 to GO:0050790 with type part_of
* Copied GO:0030337 to GO:0006259 with type part_of
* Copied GO:0031156 to GO:0080134 with type OBO_REL:is_a
* Copied GO:0031347 to GO:0080134 with type OBO_REL:is_a
* Deleted GO:0032949 --OBO_REL:is_a--> GO:0032885
* Deleted GO:0032951 --OBO_REL:is_a--> GO:0032885
* Copied GO:0033131 to GO:0006109 with type OBO_REL:is_a
* Copied GO:0042056 to GO:0050918 with type part_of
* Copied GO:0043028 to GO:0043281 with type part_of
* Copied GO:0043416 to GO:0080134 with type OBO_REL:is_a
* Copied GO:0043506 to GO:0046328 with type OBO_REL:is_a
* Copied GO:0043506 to GO:0001932 with type OBO_REL:is_a
* Copied GO:0043516 to GO:0080135 with type OBO_REL:is_a
* Copied GO:0043549 to GO:0042325 with type OBO_REL:is_a
* Copied GO:0043550 to GO:0019216 with type OBO_REL:is_a
* Copied GO:0045499 to GO:0050919 with type part_of
* Copied GO:0048679 to GO:0080134 with type OBO_REL:is_a
* Changed definition of GO:0048762 from "The process whereby a relatively unspecialized cell acquires specialized features of a mesenchymal cell." to "The process whereby a relatively unspecialized cell acquires specialized features of a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types."
* Added definition dbxref GOC:dph to GO:0048762
* Changed name of GO:0060444 from "branching involved in mammary gland morphogenesis" to "branching involved in mammary gland duct morphogenesis"
* Changed definition of GO:0060444 from "The process by which the branching structure of the mammary gland is generated and organized. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk." to "The process by which the branching structure of the mammary gland duct is generated and organized. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk."
* Deleted GO:0060444 --OBO_REL:is_a--> GO:0001763
* Deleted GO:0060444 --part_of--> GO:0060443
* Copied GO:0060444 to GO:0048754 with type OBO_REL:is_a
* Copied GO:0060444 to GO:0060562 with type OBO_REL:is_a
* Copied GO:0060444 to GO:0060603 with type part_of
* Changed name of GO:0060598 from "dichotomous subdivision of terminal units involved in mammary gland morphogenesis" to "dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis"
* Changed name of GO:0060599 from "lateral sprouting involved in mammary gland morphogenesis" to "lateral sprouting involved in mammary gland duct morphogenesis"
* Changed definition of GO:0060600 from "x." to "The process whereby an epithelial cord, rod or tube bifurcates at its end."
* Copied GO:0070562 to GO:0032107 with type OBO_REL:is_a
* Copied GO:0070563 to GO:0032108 with type OBO_REL:is_a
* Copied GO:0070564 to GO:0032109 with type OBO_REL:is_a

More information about the Go-diff mailing list