[Go-diff] GO update 05/20/2009

Wed May 20 21:30:54 PDT 2009

OBODIFF of gene_ontology_write.obo version 1.618 by 1.620

Starting obodiff at /share/go/bin/oboedit/current using 256M of memory
* Created object of type obo:TERM with id GO:0010963
* Created object of type obo:TERM with id GO:0010964
* Created object of type obo:TERM with id GO:0010965
* Created object of type obo:TERM with id GO:0010966
* Created object of type obo:TERM with id GO:0010967
* Created object of type obo:TERM with id GO:0010968
* Created object of type obo:TERM with id GO:0010969
* Created object of type obo:TERM with id GO:0060639
* Created object of type obo:TERM with id GO:0060640
* Created object of type obo:TERM with id GO:0060641
* Populated new object GO:0010963 (macro)
  * Changed name of GO:0010963 from "<new term>" to "regulation of L-arginine import"
  * Set definition of GO:0010963 to "Any process that modulates the frequency, rate or extent of L-arginine import. L-arginine import is the directed movement of L-arginine, the L-enantiomer of 2-amino-5-guanidinopentanoic acid, into a cell or organelle."
  * Added definition dbxref GOC:dph to GO:0010963
  * Added definition dbxref GOC:tb to GO:0010963
  * Copied GO:0010963 to GO:0010958 with type OBO_REL:is_a
  * Copied GO:0010963 to GO:0043091 with type regulates
  * Assigned namespace "biological_process" to GO:0010963
* Populated new object GO:0010964 (macro)
  * Changed name of GO:0010964 from "<new term>" to "regulation of chromatin silencing by small RNA"
  * Set definition of GO:0010964 to "Any process that modulates the frequency, rate or extent of chromatin silencing by small RNA. Chromatin silencing by small RNA is the repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region."
  * Added definition dbxref GOC:dph to GO:0010964
  * Added definition dbxref GOC:tb to GO:0010964
  * Copied GO:0010964 to GO:0031048 with type regulates
  * Copied GO:0010964 to GO:0050794 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010964
* Populated new object GO:0010965 (macro)
  * Changed name of GO:0010965 from "<new term>" to "regulation of mitotic sister chromatid separation"
  * Set definition of GO:0010965 to "Any process that modulates the frequency, rate or extent of mitotic sister chromatid separation. Mitotic sister chromatid separation is the process by which sister chromatids are physically detached from each other during mitosis."
  * Added definition dbxref GOC:dph to GO:0010965
  * Added definition dbxref GOC:tb to GO:0010965
  * Copied GO:0010965 to GO:0051306 with type regulates
  * Copied GO:0010965 to GO:0007088 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010965
* Populated new object GO:0010966 (macro)
  * Changed name of GO:0010966 from "<new term>" to "regulation of phosphate transport"
  * Set definition of GO:0010966 to "Any process that modulates the frequency, rate or extent of phosphate transport. Phosphate transport is the directed movement of phosphate into, out of, within or between cells."
  * Added definition dbxref GOC:dph to GO:0010966
  * Added definition dbxref GOC:tb to GO:0010966
  * Copied GO:0010966 to GO:0044070 with type OBO_REL:is_a
  * Copied GO:0010966 to GO:0006817 with type regulates
  * Assigned namespace "biological_process" to GO:0010966
* Populated new object GO:0010967 (macro)
  * Changed name of GO:0010967 from "<new term>" to "regulation of polyamine biosynthetic process"
  * Set definition of GO:0010967 to "Any process that modulates the frequency, rate or extent of polyamine biosynthesis. Polyamine biosynthesis is the chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups."
  * Added definition dbxref GOC:dph to GO:0010967
  * Added definition dbxref GOC:tb to GO:0010967
  * Copied GO:0010967 to GO:0006596 with type regulates
  * Copied GO:0010967 to GO:0033238 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010967
* Populated new object GO:0010968 (macro)
  * Changed name of GO:0010968 from "<new term>" to "regulation of microtubule nucleation"
  * Set definition of GO:0010968 to "Any process that modulates the rate, frequency or extent of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell."
  * Added definition dbxref GOC:dph to GO:0010968
  * Added definition dbxref GOC:tb to GO:0010968
  * Copied GO:0010968 to GO:0007020 with type regulates
  * Copied GO:0010968 to GO:0070507 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0010968
* Populated new object GO:0010969 (macro)
  * Changed name of GO:0010969 from "<new term>" to "regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion"
  * Set definition of GO:0010969 to "Any process that modulates the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion."
  * Added definition dbxref GOC:dph to GO:0010969
  * Added definition dbxref GOC:tb to GO:0010969
  * Copied GO:0010969 to GO:0060238 with type OBO_REL:is_a
  * Copied GO:0010969 to GO:0000750 with type regulates
  * Assigned namespace "biological_process" to GO:0010969
* Populated new object GO:0060639 (macro)
  * Changed name of GO:0060639 from "<new term>" to "positive regulation of salivary gland formation by mesenchymal-epithelial signaling"
  * Set definition of GO:0060639 to "Any process that induces the formation of the salivary gland field by means of the secretion of a signal by a mesenchymal cell and its reception and interpretation by an epithelial cell resulting in it adopting the identity of a salivary gland bud cell."
  * Added definition dbxref GOC:dph to GO:0060639
  * Copied GO:0060639 to GO:0007435 with type positively_regulates
  * Copied GO:0060639 to GO:0060638 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060639
* Populated new object GO:0060640 (macro)
  * Changed name of GO:0060640 from "<new term>" to "positive regulation of dentine-containing tooth bud formation by mesenchymal-epithelial signaling"
  * Set definition of GO:0060640 to "Any process that initiates the formation of a tooth bud by the secretion of a signal from a mesenchymal cell and its reception and subsequent change in the identity of an epithelial cell of the tooth bud."
  * Added definition dbxref GOC:dph to GO:0060640
  * Copied GO:0060640 to GO:0042488 with type OBO_REL:is_a
  * Copied GO:0060640 to GO:0060638 with type OBO_REL:is_a
  * Assigned namespace "biological_process" to GO:0060640
* Populated new object GO:0060641 (macro)
  * Changed name of GO:0060641 from "<new term>" to "mammary gland duct regression in males"
  * Set definition of GO:0060641 to "The process by which the epithelium of the mammary duct is destroyed in males."
  * Added definition dbxref GOC:dph to GO:0060641
  * Added definition dbxref PMID:12558599 to GO:0060641
  * Copied GO:0060641 to GO:0060033 with type OBO_REL:is_a
  * Copied GO:0060641 to GO:0060603 with type part_of
  * Assigned namespace "biological_process" to GO:0060641
* Changed name of GO:0000750 from "pheromone-dependent signal transduction during conjugation with cellular fusion" to "pheromone-dependent signal transduction involved in conjugation with cellular fusion"
* Changed definition of GO:0001725 from "A contractile actin filament bundle that consists of short
actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber." to "A contractile actin filament bundle that consists of short actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber."
* Changed name of GO:0032005 from "signal transduction during conjugation with cellular fusion" to "signal transduction involved in conjugation with cellular fusion"
* Added synonym "regulation of actin cable assembly" to GO:0032231
* Added general dbxref GOC:tb to synonym regulation of actin cable assembly of GO:0032231
* Added general dbxref GOC:dph to synonym regulation of actin cable assembly of GO:0032231
* Changed synonym scope of GO:0032231 from "Related" to "Exact"
* Changed definition of GO:0043149 from "The aggregation, arrangement and bonding together of a set of components to form a stress fiber. A stress fiber is a contractile actin filament bundle that consists of short
actin filaments with alternating polarity." to "The aggregation, arrangement and bonding together of a set of components to form a stress fiber. A stress fiber is a contractile actin filament bundle that consists of short actin filaments with alternating polarity."
* Changed name of GO:0060238 from "regulation of signal transduction during conjugation with cellular fusion" to "regulation of signal transduction involved in conjugation with cellular fusion"
* Changed definition of GO:0060238 from "Any process that modulates the rate, frequency or extent of the series of molecular signals that bring about the relay, amplification or dampening of a signal generated in response to a cue, such as starvation or pheromone exposure, in organisms that undergo conjugation with cellular fusion." to "Any process that modulates the rate, frequency or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, the series of molecular signals that bring about the relay, amplification or dampening of a signal generated in response to a cue, such as starvation or pheromone exposure, in organisms that undergo conjugation with cellular fusion."
* Changed name of GO:0060239 from "positive regulation of signal transduction during conjugation with cellular fusion" to "positive regulation of signal transduction involved in conjugation with cellular fusion"
* Changed name of GO:0060240 from "negative regulation of signal transduction during conjugation with cellular fusion" to "negative regulation of signal transduction involved in conjugation with cellular fusion"
* Changed name of GO:0060614 from "negative regulation of mammary gland development by androgen receptor signaling pathway" to "negative regulation of mammary gland development in males by androgen receptor signaling pathway"
* Changed definition of GO:0060614 from "Any process that decreases the rate or extent of mammary gland development by an androgen binding to its receptor, causing a change in state or activity of a cell." to "Any process that decreases the rate or extent of mammary gland development in the male by an androgen binding to its receptor, causing a change in state or activity of a cell."
* Changed definition of GO:0060617 from "Any process that mediates the transfer of information from a mesenchymal cell to an epithelial cell that results in the formation of a mammary placode." to "Any process that initiates the formation of a mammary placode through a mechanism that mediates the transfer of information from a mesenchymal cell to an epithelial cell resulting in the epithelial cell adopting the identity of a cell of the mammary placode."