From gocvs at genome.stanford.edu Mon Nov 2 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 2 Nov 2009 21:30:13 -0800 Subject: [Go-diff] GO update 11/02/2009 Message-ID: <200911030530.nA35UDA3026943@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.868 by 1.870 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003322 * Created object of type obo:TERM with id GO:0003323 * Created object of type obo:TERM with id GO:0003324 * Created object of type obo:TERM with id GO:0003325 * Created object of type obo:TERM with id GO:0003326 * Created object of type obo:TERM with id GO:0003327 * Created object of type obo:TERM with id GO:0003328 * Created object of type obo:TERM with id GO:0003329 * Created object of type obo:TERM with id GO:0003330 * Created object of type obo:TERM with id GO:0003331 * Created object of type obo:TERM with id GO:0003332 * Created object of type obo:TERM with id GO:0003333 * [Changed name of GO:0003322 from "null" to "pancreatic A cell development", Set definition of GO:0003322 to "The process whose specific outcome is the progression of a pancreatic A cell over time, from its formation to the mature structure. A pancreatic A cell is a cell in the pancreas that secretes glucagon.", Added definition dbxref GOC:dph to GO:0003322, Added synonym "pancreatic alpha cell development" to GO:0003322, Added general dbxref GOC:dph to synonym pancreatic alpha cell development of GO:0003322, Changed synonym scope of GO:0003322 from "Related" to "Exact", Created link GO:0003322 -part_of-> GO:0003310, Created link GO:0003322 -OBO_REL:is_a-> GO:0048468, Assigned namespace "biological_process" to GO:0003322] * Changed name of GO:0003322 from "null" to "pancreatic A cell development" * Set definition of GO:0003322 to "The process whose specific outcome is the progression of a pancreatic A cell over time, from its formation to the mature structure. A pancreatic A cell is a cell in the pancreas that secretes glucagon." * Added definition dbxref GOC:dph to GO:0003322 * Added synonym "pancreatic alpha cell development" to GO:0003322 * Added general dbxref GOC:dph to synonym pancreatic alpha cell development of GO:0003322 * Changed synonym scope of GO:0003322 from "Related" to "Exact" * Created link GO:0003322 -part_of-> GO:0003310 * Created link GO:0003322 -OBO_REL:is_a-> GO:0048468 * Assigned namespace "biological_process" to GO:0003322 * [Changed name of GO:0003323 from "null" to "pancreatic B cell development", Set definition of GO:0003323 to "The process whose specific outcome is the progression of a pancreatic B cell over time, from its formation to the mature structure. Beta cells are cells of the pancreas that secrete insulin.", Added definition dbxref GOC:dph to GO:0003323, Added synonym "pancreatic beta cell development" to GO:0003323, Added general dbxref GOC:dph to synonym pancreatic beta cell development of GO:0003323, Changed synonym scope of GO:0003323 from "Related" to "Exact", Created link GO:0003323 -OBO_REL:is_a-> GO:0048468, Created link GO:0003323 -part_of-> GO:0003309, Assigned namespace "biological_process" to GO:0003323] * Changed name of GO:0003323 from "null" to "pancreatic B cell development" * Set definition of GO:0003323 to "The process whose specific outcome is the progression of a pancreatic B cell over time, from its formation to the mature structure. Beta cells are cells of the pancreas that secrete insulin." * Added definition dbxref GOC:dph to GO:0003323 * Added synonym "pancreatic beta cell development" to GO:0003323 * Added general dbxref GOC:dph to synonym pancreatic beta cell development of GO:0003323 * Changed synonym scope of GO:0003323 from "Related" to "Exact" * Created link GO:0003323 -OBO_REL:is_a-> GO:0048468 * Created link GO:0003323 -part_of-> GO:0003309 * Assigned namespace "biological_process" to GO:0003323 * [Changed name of GO:0003324 from "null" to "pancreatic D cell development", Set definition of GO:0003324 to "The process whose specific outcome is the progression of a pancreatic delta cell over time, from its formation to the mature structure. A delta cell is a cell of the pancreas that produces somatostatin.", Added definition dbxref GOC:dph to GO:0003324, Added synonym "pancreatic delta cell development" to GO:0003324, Added general dbxref GOC:dph to synonym pancreatic delta cell development of GO:0003324, Changed synonym scope of GO:0003324 from "Related" to "Exact", Created link GO:0003324 -part_of-> GO:0003311, Created link GO:0003324 -OBO_REL:is_a-> GO:0048468, Assigned namespace "biological_process" to GO:0003324] * Changed name of GO:0003324 from "null" to "pancreatic D cell development" * Set definition of GO:0003324 to "The process whose specific outcome is the progression of a pancreatic delta cell over time, from its formation to the mature structure. A delta cell is a cell of the pancreas that produces somatostatin." * Added definition dbxref GOC:dph to GO:0003324 * Added synonym "pancreatic delta cell development" to GO:0003324 * Added general dbxref GOC:dph to synonym pancreatic delta cell development of GO:0003324 * Changed synonym scope of GO:0003324 from "Related" to "Exact" * Created link GO:0003324 -part_of-> GO:0003311 * Created link GO:0003324 -OBO_REL:is_a-> GO:0048468 * Assigned namespace "biological_process" to GO:0003324 * [Changed name of GO:0003325 from "null" to "pancreatic PP cell development", Set definition of GO:0003325 to "The process whose specific outcome is the progression of a pancreatic PP cell over time, from its formation to the mature structure. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide.", Added definition dbxref GOC:dph to GO:0003325, Created link GO:0003325 -OBO_REL:is_a-> GO:0048468, Created link GO:0003325 -part_of-> GO:0003312, Assigned namespace "biological_process" to GO:0003325] * Changed name of GO:0003325 from "null" to "pancreatic PP cell development" * Set definition of GO:0003325 to "The process whose specific outcome is the progression of a pancreatic PP cell over time, from its formation to the mature structure. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide." * Added definition dbxref GOC:dph to GO:0003325 * Created link GO:0003325 -OBO_REL:is_a-> GO:0048468 * Created link GO:0003325 -part_of-> GO:0003312 * Assigned namespace "biological_process" to GO:0003325 * [Changed name of GO:0003326 from "null" to "pancreatic A cell fate commitment", Set definition of GO:0003326 to "The commitment of a cell to a pancreatic A cell and its capacity to differentiate into a pancreatic A cell. A pancreatic A cell is a cell in the pancreas that secretes glucagon.", Added definition dbxref GOC:dph to GO:0003326, Created link GO:0003326 -part_of-> GO:0003310, Created link GO:0003326 -OBO_REL:is_a-> GO:0045165, Assigned namespace "biological_process" to GO:0003326] * Changed name of GO:0003326 from "null" to "pancreatic A cell fate commitment" * Set definition of GO:0003326 to "The commitment of a cell to a pancreatic A cell and its capacity to differentiate into a pancreatic A cell. A pancreatic A cell is a cell in the pancreas that secretes glucagon." * Added definition dbxref GOC:dph to GO:0003326 * Created link GO:0003326 -part_of-> GO:0003310 * Created link GO:0003326 -OBO_REL:is_a-> GO:0045165 * Assigned namespace "biological_process" to GO:0003326 * [Changed name of GO:0003327 from "null" to "pancreatic B cell fate commitment", Set definition of GO:0003327 to "The commitment of a cell to a pancreatic B cell fate and its capacity to differentiate into a pancreatic B cell. Beta cells are cells of the pancreas that secrete insulin.", Added definition dbxref GOC:dph to GO:0003327, Created link GO:0003327 -part_of-> GO:0003309, Created link GO:0003327 -OBO_REL:is_a-> GO:0045165, Assigned namespace "biological_process" to GO:0003327] * Changed name of GO:0003327 from "null" to "pancreatic B cell fate commitment" * Set definition of GO:0003327 to "The commitment of a cell to a pancreatic B cell fate and its capacity to differentiate into a pancreatic B cell. Beta cells are cells of the pancreas that secrete insulin." * Added definition dbxref GOC:dph to GO:0003327 * Created link GO:0003327 -part_of-> GO:0003309 * Created link GO:0003327 -OBO_REL:is_a-> GO:0045165 * Assigned namespace "biological_process" to GO:0003327 * [Changed name of GO:0003328 from "null" to "pancreatic D cell fate commitment", Set definition of GO:0003328 to "The commitment of a cell to a pancreatic D cell fate and its capacity to differentiate into a pancreatic D cell. A delta cell is a cell of the pancreas that produces somatostatin.", Added definition dbxref GOC:dph to GO:0003328, Created link GO:0003328 -OBO_REL:is_a-> GO:0045165, Created link GO:0003328 -part_of-> GO:0003311, Assigned namespace "biological_process" to GO:0003328] * Changed name of GO:0003328 from "null" to "pancreatic D cell fate commitment" * Set definition of GO:0003328 to "The commitment of a cell to a pancreatic D cell fate and its capacity to differentiate into a pancreatic D cell. A delta cell is a cell of the pancreas that produces somatostatin." * Added definition dbxref GOC:dph to GO:0003328 * Created link GO:0003328 -OBO_REL:is_a-> GO:0045165 * Created link GO:0003328 -part_of-> GO:0003311 * Assigned namespace "biological_process" to GO:0003328 * [Changed name of GO:0003329 from "null" to "pancreatic PP cell fate commitment", Set definition of GO:0003329 to "The commitment of a cell to a pancreatic PP cell fate and its capacity to differentiate into a pancreatic PP cell. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide.", Added definition dbxref GOC:dph to GO:0003329, Created link GO:0003329 -OBO_REL:is_a-> GO:0045165, Created link GO:0003329 -part_of-> GO:0003312, Assigned namespace "biological_process" to GO:0003329] * Changed name of GO:0003329 from "null" to "pancreatic PP cell fate commitment" * Set definition of GO:0003329 to "The commitment of a cell to a pancreatic PP cell fate and its capacity to differentiate into a pancreatic PP cell. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide." * Added definition dbxref GOC:dph to GO:0003329 * Created link GO:0003329 -OBO_REL:is_a-> GO:0045165 * Created link GO:0003329 -part_of-> GO:0003312 * Assigned namespace "biological_process" to GO:0003329 * [Changed name of GO:0003330 from "null" to "regulation of extracellular matrix constituent secretion", Set definition of GO:0003330 to "Any process that modulates the rate, frequency, or extent of the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells.", Added definition dbxref GOC:dph to GO:0003330, Added definition dbxref GOC:tb to GO:0003330, Created link GO:0003330 -OBO_REL:is_a-> GO:0050794, Created link GO:0003330 -OBO_REL:is_a-> GO:0051046, Created link GO:0003330 -regulates-> GO:0070278, Assigned namespace "biological_process" to GO:0003330] * Changed name of GO:0003330 from "null" to "regulation of extracellular matrix constituent secretion" * Set definition of GO:0003330 to "Any process that modulates the rate, frequency, or extent of the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells." * Added definition dbxref GOC:dph to GO:0003330 * Added definition dbxref GOC:tb to GO:0003330 * Created link GO:0003330 -OBO_REL:is_a-> GO:0050794 * Created link GO:0003330 -OBO_REL:is_a-> GO:0051046 * Created link GO:0003330 -regulates-> GO:0070278 * Assigned namespace "biological_process" to GO:0003330 * [Changed name of GO:0003331 from "null" to "positive regulation of extracellular matrix constituent secretion", Set definition of GO:0003331 to "Any process that increases the rate, frequency, or extent of the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells.", Added definition dbxref GOC:dph to GO:0003331, Added definition dbxref GOC:tb to GO:0003331, Created link GO:0003331 -OBO_REL:is_a-> GO:0051047, Created link GO:0003331 -OBO_REL:is_a-> GO:0003330, Created link GO:0003331 -positively_regulates-> GO:0070278, Created link GO:0003331 -OBO_REL:is_a-> GO:0048522, Assigned namespace "biological_process" to GO:0003331] * Changed name of GO:0003331 from "null" to "positive regulation of extracellular matrix constituent secretion" * Set definition of GO:0003331 to "Any process that increases the rate, frequency, or extent of the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells." * Added definition dbxref GOC:dph to GO:0003331 * Added definition dbxref GOC:tb to GO:0003331 * Created link GO:0003331 -OBO_REL:is_a-> GO:0051047 * Created link GO:0003331 -OBO_REL:is_a-> GO:0003330 * Created link GO:0003331 -positively_regulates-> GO:0070278 * Created link GO:0003331 -OBO_REL:is_a-> GO:0048522 * Assigned namespace "biological_process" to GO:0003331 * [Changed name of GO:0003332 from "null" to "negative regulation of extracellular matrix constituent secretion", Set definition of GO:0003332 to "Any process that decreases the rate, frequency, or extent the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells.", Added definition dbxref GOC:dph to GO:0003332, Added definition dbxref GOC:tb to GO:0003332, Created link GO:0003332 -OBO_REL:is_a-> GO:0051048, Created link GO:0003332 -OBO_REL:is_a-> GO:0003330, Created link GO:0003332 -negatively_regulates-> GO:0070278, Created link GO:0003332 -OBO_REL:is_a-> GO:0048523, Assigned namespace "biological_process" to GO:0003332] * Changed name of GO:0003332 from "null" to "negative regulation of extracellular matrix constituent secretion" * Set definition of GO:0003332 to "Any process that decreases the rate, frequency, or extent the controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell or a group of cells." * Added definition dbxref GOC:dph to GO:0003332 * Added definition dbxref GOC:tb to GO:0003332 * Created link GO:0003332 -OBO_REL:is_a-> GO:0051048 * Created link GO:0003332 -OBO_REL:is_a-> GO:0003330 * Created link GO:0003332 -negatively_regulates-> GO:0070278 * Created link GO:0003332 -OBO_REL:is_a-> GO:0048523 * Assigned namespace "biological_process" to GO:0003332 * [Changed name of GO:0003333 from "null" to "amino acid transmembrane transport", Set definition of GO:0003333 to "The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane.", Added definition dbxref GOC:dph to GO:0003333, Added definition dbxref GOC:tb to GO:0003333, Created link GO:0003333 -OBO_REL:is_a-> GO:0055085, Created link GO:0003333 -OBO_REL:is_a-> GO:0006865, Assigned namespace "biological_process" to GO:0003333] * Changed name of GO:0003333 from "null" to "amino acid transmembrane transport" * Set definition of GO:0003333 to "The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane." * Added definition dbxref GOC:dph to GO:0003333 * Added definition dbxref GOC:tb to GO:0003333 * Created link GO:0003333 -OBO_REL:is_a-> GO:0055085 * Created link GO:0003333 -OBO_REL:is_a-> GO:0006865 * Assigned namespace "biological_process" to GO:0003333 * Deleted GO:0003306 --part_of--> GO:0060976 * Created link GO:0003306 -part_of-> GO:0007507 * Added synonym "pancreatic beta cell differentiation" to GO:0003309 * Added general dbxref GOC:dph to synonym pancreatic beta cell differentiation of GO:0003309 * Changed synonym scope of GO:0003309 from "Related" to "Exact" * Created link GO:0006853 -OBO_REL:is_a-> GO:0003333 * Deleted synonym "amino acid transmembrane transport" from GO:0006865 * Deleted GO:0006865 --OBO_REL:is_a--> GO:0055085 * Deleted GO:0015171 --part_of--> GO:0006865 * Created link GO:0015171 -part_of-> GO:0003333 * Deleted synonym "regulation of amino acid transmembrane transport" from GO:0051955 * Deleted GO:0051955 --OBO_REL:is_a--> GO:0034762 * Deleted GO:0060357 --OBO_REL:is_a--> GO:0051955 * Created link GO:0060357 -OBO_REL:is_a-> GO:0010958 From gocvs at genome.stanford.edu Tue Nov 3 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 3 Nov 2009 21:30:12 -0800 Subject: [Go-diff] GO update 11/03/2009 Message-ID: <200911040530.nA45UCpV032184@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.870 by 1.872 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070995 * Created object of type obo:TERM with id GO:0070996 * Created object of type obo:TERM with id GO:0070997 * Created object of type obo:TERM with id GO:0070998 * Created object of type obo:TERM with id GO:0070999 * Created object of type obo:TERM with id GO:0071052 * Created object of type obo:TERM with id GO:0071053 * Created object of type obo:TERM with id GO:0071054 * Created object of type obo:TERM with id GO:0071055 * Created object of type obo:TERM with id GO:0071056 * Created object of type obo:TERM with id GO:0071057 * Created object of type obo:TERM with id GO:0071058 * Created object of type obo:TERM with id GO:0071059 * Created object of type obo:TERM with id GO:0071060 * Created object of type obo:TERM with id GO:0071061 * Created object of type obo:TERM with id GO:0071062 * Created object of type obo:TERM with id GO:0071064 * Created object of type obo:TERM with id GO:0071065 * Created object of type obo:TERM with id GO:0071067 * Created object of type obo:TERM with id GO:0071068 * Created object of type obo:TERM with id GO:0071069 * Created object of type obo:TERM with id GO:0071070 * [Changed name of GO:0070995 from "null" to "NADPH oxidation", Set definition of GO:0070995 to "A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADPH, to the oxidized form, NADP.", Added definition dbxref GOC:mah to GO:0070995, Added synonym "NADP (reduced) dehydrogenation" to GO:0070995, Added general dbxref GOC:mah to synonym NADP (reduced) dehydrogenation of GO:0070995, Changed synonym scope of GO:0070995 from "Related" to "Exact", Added synonym "NADP (reduced) oxidation" to GO:0070995, Added general dbxref GOC:mah to synonym NADP (reduced) oxidation of GO:0070995, Changed synonym scope of GO:0070995 from "Related" to "Exact", Added synonym "NADPH dehydrogenation" to GO:0070995, Added general dbxref GOC:mah to synonym NADPH dehydrogenation of GO:0070995, Changed synonym scope of GO:0070995 from "Related" to "Exact", Added synonym "reduced NADP dehydrogenation" to GO:0070995, Added general dbxref GOC:mah to synonym reduced NADP dehydrogenation of GO:0070995, Changed synonym scope of GO:0070995 from "Related" to "Exact", Added synonym "reduced NADP oxidation" to GO:0070995, Added general dbxref GOC:mah to synonym reduced NADP oxidation of GO:0070995, Changed synonym scope of GO:0070995 from "Related" to "Exact", Added synonym "reduced nicotinamide adenine dinucleotide phosphate dehydrogenation" to GO:0070995, Added general dbxref GOC:mah to synonym reduced nicotinamide adenine dinucleotide phosphate dehydrogenation of GO:0070995, Changed synonym scope of GO:0070995 from "Related" to "Exact", Added synonym "reduced nicotinamide adenine dinucleotide phosphate oxidation" to GO:0070995, Added general dbxref GOC:mah to synonym reduced nicotinamide adenine dinucleotide phosphate oxidation of GO:0070995, Changed synonym scope of GO:0070995 from "Related" to "Exact", Created link GO:0070995 -OBO_REL:is_a-> GO:0006739, Assigned namespace "biological_process" to GO:0070995] * Changed name of GO:0070995 from "null" to "NADPH oxidation" * Set definition of GO:0070995 to "A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADPH, to the oxidized form, NADP." * Added definition dbxref GOC:mah to GO:0070995 * Added synonym "NADP (reduced) dehydrogenation" to GO:0070995 * Added general dbxref GOC:mah to synonym NADP (reduced) dehydrogenation of GO:0070995 * Changed synonym scope of GO:0070995 from "Related" to "Exact" * Added synonym "NADP (reduced) oxidation" to GO:0070995 * Added general dbxref GOC:mah to synonym NADP (reduced) oxidation of GO:0070995 * Changed synonym scope of GO:0070995 from "Related" to "Exact" * Added synonym "NADPH dehydrogenation" to GO:0070995 * Added general dbxref GOC:mah to synonym NADPH dehydrogenation of GO:0070995 * Changed synonym scope of GO:0070995 from "Related" to "Exact" * Added synonym "reduced NADP dehydrogenation" to GO:0070995 * Added general dbxref GOC:mah to synonym reduced NADP dehydrogenation of GO:0070995 * Changed synonym scope of GO:0070995 from "Related" to "Exact" * Added synonym "reduced NADP oxidation" to GO:0070995 * Added general dbxref GOC:mah to synonym reduced NADP oxidation of GO:0070995 * Changed synonym scope of GO:0070995 from "Related" to "Exact" * Added synonym "reduced nicotinamide adenine dinucleotide phosphate dehydrogenation" to GO:0070995 * Added general dbxref GOC:mah to synonym reduced nicotinamide adenine dinucleotide phosphate dehydrogenation of GO:0070995 * Changed synonym scope of GO:0070995 from "Related" to "Exact" * Added synonym "reduced nicotinamide adenine dinucleotide phosphate oxidation" to GO:0070995 * Added general dbxref GOC:mah to synonym reduced nicotinamide adenine dinucleotide phosphate oxidation of GO:0070995 * Changed synonym scope of GO:0070995 from "Related" to "Exact" * Created link GO:0070995 -OBO_REL:is_a-> GO:0006739 * Assigned namespace "biological_process" to GO:0070995 * [Changed name of GO:0070996 from "null" to "type 1 melanocortin receptor binding", Set definition of GO:0070996 to "Interacting selectively and non-covalently with a type 1 melanocortin receptor.", Added definition dbxref GOC:mah to GO:0070996, Added synonym "type 1 melanocortin receptor ligand" to GO:0070996, Added general dbxref GOC:mah to synonym type 1 melanocortin receptor ligand of GO:0070996, Changed synonym scope of GO:0070996 from "Related" to "Narrow", Created link GO:0070996 -OBO_REL:is_a-> GO:0031779, Assigned namespace "molecular_function" to GO:0070996] * Changed name of GO:0070996 from "null" to "type 1 melanocortin receptor binding" * Set definition of GO:0070996 to "Interacting selectively and non-covalently with a type 1 melanocortin receptor." * Added definition dbxref GOC:mah to GO:0070996 * Added synonym "type 1 melanocortin receptor ligand" to GO:0070996 * Added general dbxref GOC:mah to synonym type 1 melanocortin receptor ligand of GO:0070996 * Changed synonym scope of GO:0070996 from "Related" to "Narrow" * Created link GO:0070996 -OBO_REL:is_a-> GO:0031779 * Assigned namespace "molecular_function" to GO:0070996 * [Changed name of GO:0070997 from "null" to "neuron death", Set definition of GO:0070997 to "The process of cell death in a neuron.", Added definition dbxref GOC:mah to GO:0070997, Added synonym "neuron cell death" to GO:0070997, Added general dbxref GOC:mah to synonym neuron cell death of GO:0070997, Added general dbxref GOC:rl to synonym neuron cell death of GO:0070997, Changed synonym scope of GO:0070997 from "Related" to "Exact", Added synonym "neuronal cell death" to GO:0070997, Added general dbxref GOC:mah to synonym neuronal cell death of GO:0070997, Changed synonym scope of GO:0070997 from "Related" to "Exact", Created link GO:0070997 -OBO_REL:is_a-> GO:0008219, Assigned namespace "biological_process" to GO:0070997] * Changed name of GO:0070997 from "null" to "neuron death" * Set definition of GO:0070997 to "The process of cell death in a neuron." * Added definition dbxref GOC:mah to GO:0070997 * Added synonym "neuron cell death" to GO:0070997 * Added general dbxref GOC:mah to synonym neuron cell death of GO:0070997 * Added general dbxref GOC:rl to synonym neuron cell death of GO:0070997 * Changed synonym scope of GO:0070997 from "Related" to "Exact" * Added synonym "neuronal cell death" to GO:0070997 * Added general dbxref GOC:mah to synonym neuronal cell death of GO:0070997 * Changed synonym scope of GO:0070997 from "Related" to "Exact" * Created link GO:0070997 -OBO_REL:is_a-> GO:0008219 * Assigned namespace "biological_process" to GO:0070997 * [Changed name of GO:0070998 from "null" to "sensory perception of gravity", Set definition of GO:0070998 to "The series of events required for an organism to receive a gravitational stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.", Added definition dbxref GOC:mah to GO:0070998, Created link GO:0070998 -OBO_REL:is_a-> GO:0007600, Assigned namespace "biological_process" to GO:0070998] * Changed name of GO:0070998 from "null" to "sensory perception of gravity" * Set definition of GO:0070998 to "The series of events required for an organism to receive a gravitational stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." * Added definition dbxref GOC:mah to GO:0070998 * Created link GO:0070998 -OBO_REL:is_a-> GO:0007600 * Assigned namespace "biological_process" to GO:0070998 * [Changed name of GO:0070999 from "null" to "detection of mechanical stimulus involved in sensory perception of gravity", Set definition of GO:0070999 to "The series of events involved in the perception of gravity in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal.", Added definition dbxref GOC:mah to GO:0070999, Created link GO:0070999 -OBO_REL:is_a-> GO:0050974, Created link GO:0070999 -part_of-> GO:0070998, Created link GO:0070999 -OBO_REL:is_a-> GO:0009590, Assigned namespace "biological_process" to GO:0070999] * Changed name of GO:0070999 from "null" to "detection of mechanical stimulus involved in sensory perception of gravity" * Set definition of GO:0070999 to "The series of events involved in the perception of gravity in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal." * Added definition dbxref GOC:mah to GO:0070999 * Created link GO:0070999 -OBO_REL:is_a-> GO:0050974 * Created link GO:0070999 -part_of-> GO:0070998 * Created link GO:0070999 -OBO_REL:is_a-> GO:0009590 * Assigned namespace "biological_process" to GO:0070999 * [Changed name of GO:0071052 from "null" to "alpha9-beta1 integrin-ADAM1 complex", Set definition of GO:0071052 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM1.", Added definition dbxref PMID:11882657 to GO:0071052, Added synonym "ITGA9-ITGB1-ADAM1 complex" to GO:0071052, Added general dbxref CORUM:2964 to synonym ITGA9-ITGB1-ADAM1 complex of GO:0071052, Changed synonym scope of GO:0071052 from "Related" to "Narrow", Created link GO:0071052 -OBO_REL:is_a-> GO:0044459, Created link GO:0071052 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071052] * Changed name of GO:0071052 from "null" to "alpha9-beta1 integrin-ADAM1 complex" * Set definition of GO:0071052 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM1." * Added definition dbxref PMID:11882657 to GO:0071052 * Added synonym "ITGA9-ITGB1-ADAM1 complex" to GO:0071052 * Added general dbxref CORUM:2964 to synonym ITGA9-ITGB1-ADAM1 complex of GO:0071052 * Changed synonym scope of GO:0071052 from "Related" to "Narrow" * Created link GO:0071052 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071052 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071052 * [Changed name of GO:0071053 from "null" to "alpha9-beta1 integrin-ADAM2 complex", Set definition of GO:0071053 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM2.", Added definition dbxref PMID:11882657 to GO:0071053, Added synonym "ITGA9-ITGB1-ADAM2 complex" to GO:0071053, Added general dbxref CORUM:2441 to synonym ITGA9-ITGB1-ADAM2 complex of GO:0071053, Changed synonym scope of GO:0071053 from "Related" to "Narrow", Created link GO:0071053 -OBO_REL:is_a-> GO:0044459, Created link GO:0071053 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071053] * Changed name of GO:0071053 from "null" to "alpha9-beta1 integrin-ADAM2 complex" * Set definition of GO:0071053 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM2." * Added definition dbxref PMID:11882657 to GO:0071053 * Added synonym "ITGA9-ITGB1-ADAM2 complex" to GO:0071053 * Added general dbxref CORUM:2441 to synonym ITGA9-ITGB1-ADAM2 complex of GO:0071053 * Changed synonym scope of GO:0071053 from "Related" to "Narrow" * Created link GO:0071053 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071053 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071053 * [Changed name of GO:0071054 from "null" to "alpha9-beta1 integrin-ADAM3 complex", Set definition of GO:0071054 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM3.", Added definition dbxref PMID:11882657 to GO:0071054, Added synonym "ITGA9-ITGB1-ADAM3 complex" to GO:0071054, Added general dbxref CORUM:2965 to synonym ITGA9-ITGB1-ADAM3 complex of GO:0071054, Changed synonym scope of GO:0071054 from "Related" to "Narrow", Created link GO:0071054 -OBO_REL:is_a-> GO:0043234, Created link GO:0071054 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071054] * Changed name of GO:0071054 from "null" to "alpha9-beta1 integrin-ADAM3 complex" * Set definition of GO:0071054 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM3." * Added definition dbxref PMID:11882657 to GO:0071054 * Added synonym "ITGA9-ITGB1-ADAM3 complex" to GO:0071054 * Added general dbxref CORUM:2965 to synonym ITGA9-ITGB1-ADAM3 complex of GO:0071054 * Changed synonym scope of GO:0071054 from "Related" to "Narrow" * Created link GO:0071054 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071054 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071054 * [Changed name of GO:0071055 from "null" to "alpha9-beta1 integrin-ADAM9 complex", Set definition of GO:0071055 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM9.", Added definition dbxref PMID:11882657 to GO:0071055, Added synonym "ITGA9-ITGB1-ADAM9 complex" to GO:0071055, Added general dbxref CORUM:2440 to synonym ITGA9-ITGB1-ADAM9 complex of GO:0071055, Changed synonym scope of GO:0071055 from "Related" to "Narrow", Created link GO:0071055 -OBO_REL:is_a-> GO:0043234, Created link GO:0071055 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071055] * Changed name of GO:0071055 from "null" to "alpha9-beta1 integrin-ADAM9 complex" * Set definition of GO:0071055 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM9." * Added definition dbxref PMID:11882657 to GO:0071055 * Added synonym "ITGA9-ITGB1-ADAM9 complex" to GO:0071055 * Added general dbxref CORUM:2440 to synonym ITGA9-ITGB1-ADAM9 complex of GO:0071055 * Changed synonym scope of GO:0071055 from "Related" to "Narrow" * Created link GO:0071055 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071055 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071055 * [Changed name of GO:0071056 from "null" to "alpha9-beta1 integrin-ADAM15 complex", Set definition of GO:0071056 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM15.", Added definition dbxref PMID:11882657 to GO:0071056, Added synonym "ITGA9-ITGB1-ADAM15 complex" to GO:0071056, Added general dbxref CORUM:2445 to synonym ITGA9-ITGB1-ADAM15 complex of GO:0071056, Changed synonym scope of GO:0071056 from "Related" to "Narrow", Created link GO:0071056 -OBO_REL:is_a-> GO:0043234, Created link GO:0071056 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071056] * Changed name of GO:0071056 from "null" to "alpha9-beta1 integrin-ADAM15 complex" * Set definition of GO:0071056 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM15." * Added definition dbxref PMID:11882657 to GO:0071056 * Added synonym "ITGA9-ITGB1-ADAM15 complex" to GO:0071056 * Added general dbxref CORUM:2445 to synonym ITGA9-ITGB1-ADAM15 complex of GO:0071056 * Changed synonym scope of GO:0071056 from "Related" to "Narrow" * Created link GO:0071056 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071056 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071056 * [Changed name of GO:0071057 from "null" to "alphav-beta3 integrin-ADAM15 complex", Set definition of GO:0071057 to "A protein complex that consists of an alphav-beta3 integrin complex bound to the transmembrane metallopeptidase ADAM15.", Added definition dbxref PMID:10944520 to GO:0071057, Added definition dbxref PMID:11882657 to GO:0071057, Added synonym "ITGAV-ITGB3-ADAM15 complex" to GO:0071057, Added general dbxref CORUM:2359 to synonym ITGAV-ITGB3-ADAM15 complex of GO:0071057, Changed synonym scope of GO:0071057 from "Related" to "Narrow", Created link GO:0071057 -OBO_REL:is_a-> GO:0044459, Created link GO:0071057 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071057] * Changed name of GO:0071057 from "null" to "alphav-beta3 integrin-ADAM15 complex" * Set definition of GO:0071057 to "A protein complex that consists of an alphav-beta3 integrin complex bound to the transmembrane metallopeptidase ADAM15." * Added definition dbxref PMID:10944520 to GO:0071057 * Added definition dbxref PMID:11882657 to GO:0071057 * Added synonym "ITGAV-ITGB3-ADAM15 complex" to GO:0071057 * Added general dbxref CORUM:2359 to synonym ITGAV-ITGB3-ADAM15 complex of GO:0071057 * Changed synonym scope of GO:0071057 from "Related" to "Narrow" * Created link GO:0071057 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071057 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071057 * [Changed name of GO:0071058 from "null" to "alpha3-beta1 integrin-CD151 complex", Set definition of GO:0071058 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to the tetraspanin CD151.", Added definition dbxref PMID:10811835 to GO:0071058, Added definition dbxref PMID:11884516 to GO:0071058, Added synonym "ITGA3-ITGB1-CD151 complex" to GO:0071058, Added general dbxref CORUM:2400 to synonym ITGA3-ITGB1-CD151 complex of GO:0071058, Changed synonym scope of GO:0071058 from "Related" to "Narrow", Created link GO:0071058 -OBO_REL:is_a-> GO:0043234, Created link GO:0071058 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071058] * Changed name of GO:0071058 from "null" to "alpha3-beta1 integrin-CD151 complex" * Set definition of GO:0071058 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to the tetraspanin CD151." * Added definition dbxref PMID:10811835 to GO:0071058 * Added definition dbxref PMID:11884516 to GO:0071058 * Added synonym "ITGA3-ITGB1-CD151 complex" to GO:0071058 * Added general dbxref CORUM:2400 to synonym ITGA3-ITGB1-CD151 complex of GO:0071058 * Changed synonym scope of GO:0071058 from "Related" to "Narrow" * Created link GO:0071058 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071058 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071058 * [Changed name of GO:0071059 from "null" to "alpha6-beta1 integrin-CD151 complex", Set definition of GO:0071059 to "A protein complex that consists of an alpha6-beta1 integrin complex bound to the tetraspanin CD151.", Added definition dbxref PMID:11884516 to GO:0071059, Added synonym "ITGA6-ITGB1-CD151 complex" to GO:0071059, Added general dbxref CORUM:2411 to synonym ITGA6-ITGB1-CD151 complex of GO:0071059, Changed synonym scope of GO:0071059 from "Related" to "Narrow", Created link GO:0071059 -OBO_REL:is_a-> GO:0044459, Created link GO:0071059 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071059] * Changed name of GO:0071059 from "null" to "alpha6-beta1 integrin-CD151 complex" * Set definition of GO:0071059 to "A protein complex that consists of an alpha6-beta1 integrin complex bound to the tetraspanin CD151." * Added definition dbxref PMID:11884516 to GO:0071059 * Added synonym "ITGA6-ITGB1-CD151 complex" to GO:0071059 * Added general dbxref CORUM:2411 to synonym ITGA6-ITGB1-CD151 complex of GO:0071059 * Changed synonym scope of GO:0071059 from "Related" to "Narrow" * Created link GO:0071059 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071059 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071059 * [Changed name of GO:0071060 from "null" to "alpha7-beta1 integrin-CD151 complex", Set definition of GO:0071060 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to the tetraspanin CD151.", Added definition dbxref PMID:11884516 to GO:0071060, Added synonym "ITGA7-ITGB1-CD151 complex" to GO:0071060, Added general dbxref CORUM:2395 to synonym ITGA7-ITGB1-CD151 complex of GO:0071060, Changed synonym scope of GO:0071060 from "Related" to "Narrow", Created link GO:0071060 -OBO_REL:is_a-> GO:0044459, Created link GO:0071060 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071060] * Changed name of GO:0071060 from "null" to "alpha7-beta1 integrin-CD151 complex" * Set definition of GO:0071060 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to the tetraspanin CD151." * Added definition dbxref PMID:11884516 to GO:0071060 * Added synonym "ITGA7-ITGB1-CD151 complex" to GO:0071060 * Added general dbxref CORUM:2395 to synonym ITGA7-ITGB1-CD151 complex of GO:0071060 * Changed synonym scope of GO:0071060 from "Related" to "Narrow" * Created link GO:0071060 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071060 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071060 * [Changed name of GO:0071061 from "null" to "alpha6-beta4 integrin-CD151 complex", Set definition of GO:0071061 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to the tetraspanin CD151.", Added definition dbxref PMID:10811835 to GO:0071061, Added synonym "ITGA6-ITGB4-CD151 complex" to GO:0071061, Added general dbxref CORUM:2320 to synonym ITGA6-ITGB4-CD151 complex of GO:0071061, Changed synonym scope of GO:0071061 from "Related" to "Narrow", Created link GO:0071061 -OBO_REL:is_a-> GO:0044459, Created link GO:0071061 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071061] * Changed name of GO:0071061 from "null" to "alpha6-beta4 integrin-CD151 complex" * Set definition of GO:0071061 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to the tetraspanin CD151." * Added definition dbxref PMID:10811835 to GO:0071061 * Added synonym "ITGA6-ITGB4-CD151 complex" to GO:0071061 * Added general dbxref CORUM:2320 to synonym ITGA6-ITGB4-CD151 complex of GO:0071061 * Changed synonym scope of GO:0071061 from "Related" to "Narrow" * Created link GO:0071061 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071061 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071061 * [Changed name of GO:0071062 from "null" to "alphav-beta3 integrin-vitronectin complex", Set definition of GO:0071062 to "A protein complex that consists of an alphav-beta3 integrin complex bound to vitronectin.", Added definition dbxref PMID:10835423 to GO:0071062, Added synonym "ITGAV-ITGB3-VTN complex" to GO:0071062, Added general dbxref CORUM:2826 to synonym ITGAV-ITGB3-VTN complex of GO:0071062, Changed synonym scope of GO:0071062 from "Related" to "Narrow", Created link GO:0071062 -OBO_REL:is_a-> GO:0043234, Created link GO:0071062 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071062] * Changed name of GO:0071062 from "null" to "alphav-beta3 integrin-vitronectin complex" * Set definition of GO:0071062 to "A protein complex that consists of an alphav-beta3 integrin complex bound to vitronectin." * Added definition dbxref PMID:10835423 to GO:0071062 * Added synonym "ITGAV-ITGB3-VTN complex" to GO:0071062 * Added general dbxref CORUM:2826 to synonym ITGAV-ITGB3-VTN complex of GO:0071062 * Changed synonym scope of GO:0071062 from "Related" to "Narrow" * Created link GO:0071062 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071062 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071062 * [Changed name of GO:0071064 from "null" to "alphaE-beta7 integrin-E-cadherin complex", Set definition of GO:0071064 to "A protein complex that consists of an alphaE-beta7 integrin complex bound to E-cadherin.", Added definition dbxref PMID:10837471 to GO:0071064, Added synonym "ITGAE-ITGB7-CDH1 complex" to GO:0071064, Added general dbxref CORUM:1834 to synonym ITGAE-ITGB7-CDH1 complex of GO:0071064, Changed synonym scope of GO:0071064 from "Related" to "Narrow", Created link GO:0071064 -OBO_REL:is_a-> GO:0043234, Created link GO:0071064 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071064] * Changed name of GO:0071064 from "null" to "alphaE-beta7 integrin-E-cadherin complex" * Set definition of GO:0071064 to "A protein complex that consists of an alphaE-beta7 integrin complex bound to E-cadherin." * Added definition dbxref PMID:10837471 to GO:0071064 * Added synonym "ITGAE-ITGB7-CDH1 complex" to GO:0071064 * Added general dbxref CORUM:1834 to synonym ITGAE-ITGB7-CDH1 complex of GO:0071064 * Changed synonym scope of GO:0071064 from "Related" to "Narrow" * Created link GO:0071064 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071064 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071064 * [Changed name of GO:0071065 from "null" to "alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex", Set definition of GO:0071065 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular cell adhesion molecule-1.", Added definition dbxref PMID:10209034 to GO:0071065, Added synonym "ITGA9-ITGB1-VCAM1 complex" to GO:0071065, Added general dbxref CORUM:2442 to synonym ITGA9-ITGB1-VCAM1 complex of GO:0071065, Changed synonym scope of GO:0071065 from "Related" to "Narrow", Created link GO:0071065 -OBO_REL:is_a-> GO:0043234, Created link GO:0071065 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071065] * Changed name of GO:0071065 from "null" to "alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex" * Set definition of GO:0071065 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular cell adhesion molecule-1." * Added definition dbxref PMID:10209034 to GO:0071065 * Added synonym "ITGA9-ITGB1-VCAM1 complex" to GO:0071065 * Added general dbxref CORUM:2442 to synonym ITGA9-ITGB1-VCAM1 complex of GO:0071065 * Changed synonym scope of GO:0071065 from "Related" to "Narrow" * Created link GO:0071065 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071065 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071065 * [Changed name of GO:0071067 from "null" to "alphav-beta3 integrin-ADAM23 complex", Set definition of GO:0071067 to "A protein complex that consists of an alphav-beta3 integrin complex bound to the transmembrane metallopeptidase ADAM23.", Added definition dbxref PMID:10749942 to GO:0071067, Added synonym "ITGAV-ITGB3-ADAM23 complex" to GO:0071067, Added general dbxref CORUM:2364 to synonym ITGAV-ITGB3-ADAM23 complex of GO:0071067, Changed synonym scope of GO:0071067 from "Related" to "Narrow", Created link GO:0071067 -OBO_REL:is_a-> GO:0044459, Created link GO:0071067 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071067] * Changed name of GO:0071067 from "null" to "alphav-beta3 integrin-ADAM23 complex" * Set definition of GO:0071067 to "A protein complex that consists of an alphav-beta3 integrin complex bound to the transmembrane metallopeptidase ADAM23." * Added definition dbxref PMID:10749942 to GO:0071067 * Added synonym "ITGAV-ITGB3-ADAM23 complex" to GO:0071067 * Added general dbxref CORUM:2364 to synonym ITGAV-ITGB3-ADAM23 complex of GO:0071067 * Changed synonym scope of GO:0071067 from "Related" to "Narrow" * Created link GO:0071067 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071067 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071067 * [Changed name of GO:0071068 from "null" to "alpha9-beta1 integrin-ADAM12 complex", Set definition of GO:0071068 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM12.", Added definition dbxref PMID:10944520 to GO:0071068, Added synonym "ITGA9-ITGB1-ADAM12 complex" to GO:0071068, Added general dbxref CORUM:2447 to synonym ITGA9-ITGB1-ADAM12 complex of GO:0071068, Changed synonym scope of GO:0071068 from "Related" to "Narrow", Created link GO:0071068 -OBO_REL:is_a-> GO:0043234, Created link GO:0071068 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071068] * Changed name of GO:0071068 from "null" to "alpha9-beta1 integrin-ADAM12 complex" * Set definition of GO:0071068 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM12." * Added definition dbxref PMID:10944520 to GO:0071068 * Added synonym "ITGA9-ITGB1-ADAM12 complex" to GO:0071068 * Added general dbxref CORUM:2447 to synonym ITGA9-ITGB1-ADAM12 complex of GO:0071068 * Changed synonym scope of GO:0071068 from "Related" to "Narrow" * Created link GO:0071068 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071068 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071068 * [Changed name of GO:0071069 from "null" to "alpha4-beta1 integrin-thrombospondin-1 complex", Set definition of GO:0071069 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to thrombospondin-1.", Added definition dbxref PMID: to GO:0071069, Added synonym "ITGA4-ITGB1-THBS1 complex" to GO:0071069, Added general dbxref CORUM:2426 to synonym ITGA4-ITGB1-THBS1 complex of GO:0071069, Changed synonym scope of GO:0071069 from "Related" to "Narrow", Created link GO:0071069 -OBO_REL:is_a-> GO:0044459, Created link GO:0071069 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071069] * Changed name of GO:0071069 from "null" to "alpha4-beta1 integrin-thrombospondin-1 complex" * Set definition of GO:0071069 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to thrombospondin-1." * Added definition dbxref PMID: to GO:0071069 * Added synonym "ITGA4-ITGB1-THBS1 complex" to GO:0071069 * Added general dbxref CORUM:2426 to synonym ITGA4-ITGB1-THBS1 complex of GO:0071069 * Changed synonym scope of GO:0071069 from "Related" to "Narrow" * Created link GO:0071069 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071069 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071069 * [Changed name of GO:0071070 from "null" to "alpha4-beta1 integrin-thrombospondin-2 complex", Set definition of GO:0071070 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to thrombospondin-2.", Added definition dbxref PMID: to GO:0071070, Added synonym "ITGA4-ITGB1-THBS2 complex" to GO:0071070, Added general dbxref CORUM:2428 to synonym ITGA4-ITGB1-THBS2 complex of GO:0071070, Changed synonym scope of GO:0071070 from "Related" to "Narrow", Created link GO:0071070 -OBO_REL:is_a-> GO:0043234, Created link GO:0071070 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071070] * Changed name of GO:0071070 from "null" to "alpha4-beta1 integrin-thrombospondin-2 complex" * Set definition of GO:0071070 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to thrombospondin-2." * Added definition dbxref PMID: to GO:0071070 * Added synonym "ITGA4-ITGB1-THBS2 complex" to GO:0071070 * Added general dbxref CORUM:2428 to synonym ITGA4-ITGB1-THBS2 complex of GO:0071070 * Changed synonym scope of GO:0071070 from "Related" to "Narrow" * Created link GO:0071070 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071070 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071070 * Added comment "Note that nuclear mRNA, Group I, Group II, and Group III introns are all spliced by a series of two transesterification reactions that occur within the RNA itself, or between two RNAs in trans splicing. Some of these require one or more proteins to stabilize the catalytic conformation, while others are autocatalytic. Note that tRNA introns are spliced by a different catalytic mechanism." * added secondary id GO:0000385 to GO:0000375 * added secondary id GO:0031202 to GO:0000375 * Added general dbxref RNA splicing factor activity, transesterification mechanism (Reactome:160901) to GO:0000375 * Added synonym "pre-mRNA splicing factor activity" to GO:0000375 * Added general dbxref GOC:krc to synonym pre-mRNA splicing factor activity of GO:0000375 * Added general dbxref GOC:mah to synonym pre-mRNA splicing factor activity of GO:0000375 * Added synonym "RNA splicing factor activity, transesterification mechanism" to GO:0000375 * Added general dbxref GOC:krc to synonym RNA splicing factor activity, transesterification mechanism of GO:0000375 * Added general dbxref GOC:mah to synonym RNA splicing factor activity, transesterification mechanism of GO:0000375 * Added synonym "spliceosomal catalysis" to GO:0000375 * Deleted GO:0000384 --OBO_REL:is_a--> GO:0031202 * Created link GO:0000384 -OBO_REL:is_a-> GO:0003824 * Created link GO:0000384 -part_of-> GO:0000375 * Deleted GO:0000386 --OBO_REL:is_a--> GO:0031202 * Created link GO:0000386 -OBO_REL:is_a-> GO:0003824 * Created link GO:0000386 -part_of-> GO:0000375 * Changed definition of GO:0003294 from "The tissue remodeling process that contributes to the process by which the connection between an atrium and a ventricle of the heart is reorganized as part of its maturation." to "The reorganization or renovation of heart tissue that contributes to the process by which the connection between an atrium and a ventricle matures." * Added synonym "atrio-ventricular junction remodeling " to GO:0003294 * Added general dbxref GOC:mtg_heart to synonym atrio-ventricular junction remodeling of GO:0003294 * Added synonym "atrioventricular junction remodeling " to GO:0003294 * Added general dbxref GOC:mtg_heart to synonym atrioventricular junction remodeling of GO:0003294 * Changed synonym scope of GO:0003294 from "Related" to "Exact" * Changed definition of GO:0003295 from "The multiplication or reproduction of cells that contributes to the shaping of the atrial ventricular junction." to "The multiplication or reproduction of cells that contributes to the reorganization of tissue resulting in the maturation of the atrial ventricular junction." * Added synonym "cell proliferation involved in atrio-ventricular junction remodeling " to GO:0003295 * Added general dbxref GOC:mtg_heart to synonym cell proliferation involved in atrio-ventricular junction remodeling of GO:0003295 * Changed synonym scope of GO:0003295 from "Related" to "Exact" * Added synonym "cell proliferation involved in atrioventricular junction remodeling" to GO:0003295 * Added general dbxref GOC:mtg_heart to synonym cell proliferation involved in atrioventricular junction remodeling of GO:0003295 * Changed synonym scope of GO:0003295 from "Related" to "Exact" * Changed definition of GO:0003296 from "The process of apoptosis that contributes to the shaping of the atrial ventricular junction." to "The process of apoptosis that contributes to the reorganization of tissue resulting in the maturation of the atrial ventricular junction." * Added synonym "apoptosis involved in atrio-ventricular junction remodeling" to GO:0003296 * Added general dbxref GOC:mtg_heart to synonym apoptosis involved in atrio-ventricular junction remodeling of GO:0003296 * Changed synonym scope of GO:0003296 from "Related" to "Exact" * Added synonym "apoptosis involved in atrioventricular junction remodeling " to GO:0003296 * Added general dbxref GOC:mtg_heart to synonym apoptosis involved in atrioventricular junction remodeling of GO:0003296 * Changed synonym scope of GO:0003296 from "Related" to "Exact" * Adding consider replacement GO:0000375 to GO:0005570 * Removing consider replacement GO:0031202 to GO:0005570 * Removing consider replacement GO:0031202 to GO:0008248 * Deleted GO:0010904 --OBO_REL:is_a--> GO:0031329 * Deleted GO:0031059 --OBO_REL:is_a--> GO:0070846 * Deleted GO:0000384 --OBO_REL:is_a--> GO:0031202 * Deleted GO:0000386 --OBO_REL:is_a--> GO:0031202 * Destroyed object GO:0031202 * Created link GO:0051402 -OBO_REL:is_a-> GO:0070997 * Deleted GO:0052307 --regulates--> GO:0019722 * Deleted GO:0080093 --OBO_REL:is_a--> GO:0031323 From gocvs at genome.stanford.edu Wed Nov 4 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 4 Nov 2009 21:30:12 -0800 Subject: [Go-diff] GO update 11/04/2009 Message-ID: <200911050530.nA55UC14030614@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.872 by 1.875 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0044212 * Created object of type obo:TERM with id GO:0044213 * Created object of type obo:TERM with id GO:0044214 * Created object of type obo:TERM with id GO:0071000 * Created object of type obo:TERM with id GO:0071063 * Created object of type obo:TERM with id GO:0071066 * Created object of type obo:TERM with id GO:0071071 * Created object of type obo:TERM with id GO:0071072 * Created object of type obo:TERM with id GO:0071073 * Created object of type obo:TERM with id GO:0090091 * Created object of type obo:TERM with id GO:0090092 * [Changed name of GO:0044212 from "null" to "DNA regulatory region binding", Set definition of GO:0044212 to "Interacting selectively with a DNA sequence that controls the expression of a gene.", Added definition dbxref GOC:jl to GO:0044212, Added definition dbxref SO:0005836 to GO:0044212, Created link GO:0044212 -OBO_REL:is_a-> GO:0003677, Assigned namespace "molecular_function" to GO:0044212] * Changed name of GO:0044212 from "null" to "DNA regulatory region binding" * Set definition of GO:0044212 to "Interacting selectively with a DNA sequence that controls the expression of a gene." * Added definition dbxref GOC:jl to GO:0044212 * Added definition dbxref SO:0005836 to GO:0044212 * Created link GO:0044212 -OBO_REL:is_a-> GO:0003677 * Assigned namespace "molecular_function" to GO:0044212 * [Changed name of GO:0044213 from "null" to "intronic regulatory region binding", Set definition of GO:0044213 to "Interacting selectively and non-covalently with a regulatory element located in an intron of a gene.", Added definition dbxref GOC:ecd to GO:0044213, Created link GO:0044213 -OBO_REL:is_a-> GO:0044212, Assigned namespace "molecular_function" to GO:0044213] * Changed name of GO:0044213 from "null" to "intronic regulatory region binding" * Set definition of GO:0044213 to "Interacting selectively and non-covalently with a regulatory element located in an intron of a gene." * Added definition dbxref GOC:ecd to GO:0044213 * Created link GO:0044213 -OBO_REL:is_a-> GO:0044212 * Assigned namespace "molecular_function" to GO:0044213 * [Changed name of GO:0044214 from "null" to "fully spanning the plasma membrane", Set definition of GO:0044214 to "Fully spanning both phospholipid bilayers of a plasma membrane.", Added definition dbxref GOC:ecd to GO:0044214, Added synonym "transmembrane" to GO:0044214, Changed synonym scope of GO:0044214 from "Related" to "Exact", Created link GO:0044214 -OBO_REL:is_a-> GO:0044425, Assigned namespace "cellular_component" to GO:0044214] * Changed name of GO:0044214 from "null" to "fully spanning the plasma membrane" * Set definition of GO:0044214 to "Fully spanning both phospholipid bilayers of a plasma membrane." * Added definition dbxref GOC:ecd to GO:0044214 * Added synonym "transmembrane" to GO:0044214 * Changed synonym scope of GO:0044214 from "Related" to "Exact" * Created link GO:0044214 -OBO_REL:is_a-> GO:0044425 * Assigned namespace "cellular_component" to GO:0044214 * [Changed name of GO:0071000 from "null" to "response to magnetism", Set definition of GO:0071000 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnetic stimulus.", Added definition dbxref GOC:sl to GO:0071000, Added synonym "response to magnetic stimulus" to GO:0071000, Added general dbxref GOC:mah to synonym response to magnetic stimulus of GO:0071000, Changed synonym scope of GO:0071000 from "Related" to "Exact", Created link GO:0071000 -OBO_REL:is_a-> GO:0009628, Assigned namespace "biological_process" to GO:0071000] * Changed name of GO:0071000 from "null" to "response to magnetism" * Set definition of GO:0071000 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnetic stimulus." * Added definition dbxref GOC:sl to GO:0071000 * Added synonym "response to magnetic stimulus" to GO:0071000 * Added general dbxref GOC:mah to synonym response to magnetic stimulus of GO:0071000 * Changed synonym scope of GO:0071000 from "Related" to "Exact" * Created link GO:0071000 -OBO_REL:is_a-> GO:0009628 * Assigned namespace "biological_process" to GO:0071000 * [Changed name of GO:0071063 from "null" to "sensory perception of wind", Set definition of GO:0071063 to "The series of events required for an organism to receive sensory mechanical stimulus resulting from air flow, convert it to a molecular signal, and recognize and characterize the signal.", Added definition dbxref GOC:mah to GO:0071063, Added definition dbxref PMID:19279637 to GO:0071063, Added synonym "perception of wind" to GO:0071063, Added general dbxref GOC:mah to synonym perception of wind of GO:0071063, Changed synonym scope of GO:0071063 from "Related" to "Exact", Added synonym "sensory perception of air flow" to GO:0071063, Added general dbxref GOC:mah to synonym sensory perception of air flow of GO:0071063, Added general dbxref PMID:19279637 to synonym sensory perception of air flow of GO:0071063, Changed synonym scope of GO:0071063 from "Related" to "Exact", Created link GO:0071063 -OBO_REL:is_a-> GO:0050954, Assigned namespace "biological_process" to GO:0071063] * Changed name of GO:0071063 from "null" to "sensory perception of wind" * Set definition of GO:0071063 to "The series of events required for an organism to receive sensory mechanical stimulus resulting from air flow, convert it to a molecular signal, and recognize and characterize the signal." * Added definition dbxref GOC:mah to GO:0071063 * Added definition dbxref PMID:19279637 to GO:0071063 * Added synonym "perception of wind" to GO:0071063 * Added general dbxref GOC:mah to synonym perception of wind of GO:0071063 * Changed synonym scope of GO:0071063 from "Related" to "Exact" * Added synonym "sensory perception of air flow" to GO:0071063 * Added general dbxref GOC:mah to synonym sensory perception of air flow of GO:0071063 * Added general dbxref PMID:19279637 to synonym sensory perception of air flow of GO:0071063 * Changed synonym scope of GO:0071063 from "Related" to "Exact" * Created link GO:0071063 -OBO_REL:is_a-> GO:0050954 * Assigned namespace "biological_process" to GO:0071063 * [Changed name of GO:0071066 from "null" to "detection of mechanical stimulus involved in sensory perception of wind", Set definition of GO:0071066 to "The series of events involved in the perception of wind in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal.", Added definition dbxref GOC:mah to GO:0071066, Added definition dbxref PMID:19279637 to GO:0071066, Added synonym "detection of mechanical stimulus involved in sensory perception of air flow" to GO:0071066, Added general dbxref GOC:mah to synonym detection of mechanical stimulus involved in sensory perception of air flow of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Added synonym "detection of wind" to GO:0071066, Added general dbxref GOC:mah to synonym detection of wind of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Added synonym "perception of wind, detection of mechanical stimulus" to GO:0071066, Added general dbxref GOC:mah to synonym perception of wind, detection of mechanical stimulus of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Added synonym "perception of wind, sensory detection of mechanical stimulus" to GO:0071066, Added general dbxref GOC:mah to synonym perception of wind, sensory detection of mechanical stimulus of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Added synonym "perception of wind, sensory transduction of mechanical stimulus" to GO:0071066, Added general dbxref GOC:mah to synonym perception of wind, sensory transduction of mechanical stimulus of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Added synonym "sensory detection of mechanical stimulus during perception of wind" to GO:0071066, Added general dbxref GOC:mah to synonym sensory detection of mechanical stimulus during perception of wind of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Added synonym "sensory transduction of mechanical stimul! us durin g perception of wind" to GO:0071066, Added general dbxref GOC:mah to synonym sensory transduction of mechanical stimulus during perception of wind of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Added synonym "sensory transduction of wind" to GO:0071066, Added general dbxref GOC:mah to synonym sensory transduction of wind of GO:0071066, Changed synonym scope of GO:0071066 from "Related" to "Exact", Created link GO:0071066 -OBO_REL:is_a-> GO:0050877, Created link GO:0071066 -OBO_REL:is_a-> GO:0050974, Created link GO:0071066 -part_of-> GO:0071063, Assigned namespace "biological_process" to GO:0071066] * Changed name of GO:0071066 from "null" to "detection of mechanical stimulus involved in sensory perception of wind" * Set definition of GO:0071066 to "The series of events involved in the perception of wind in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal." * Added definition dbxref GOC:mah to GO:0071066 * Added definition dbxref PMID:19279637 to GO:0071066 * Added synonym "detection of mechanical stimulus involved in sensory perception of air flow" to GO:0071066 * Added general dbxref GOC:mah to synonym detection of mechanical stimulus involved in sensory perception of air flow of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Added synonym "detection of wind" to GO:0071066 * Added general dbxref GOC:mah to synonym detection of wind of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Added synonym "perception of wind, detection of mechanical stimulus" to GO:0071066 * Added general dbxref GOC:mah to synonym perception of wind, detection of mechanical stimulus of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Added synonym "perception of wind, sensory detection of mechanical stimulus" to GO:0071066 * Added general dbxref GOC:mah to synonym perception of wind, sensory detection of mechanical stimulus of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Added synonym "perception of wind, sensory transduction of mechanical stimulus" to GO:0071066 * Added general dbxref GOC:mah to synonym perception of wind, sensory transduction of mechanical stimulus of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Added synonym "sensory detection of mechanical stimulus during perception of wind" to GO:0071066 * Added general dbxref GOC:mah to synonym sensory detection of mechanical stimulus during perception of wind of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Added synonym "sensory transduction of mechanical stimulus during perception of wind" to GO:0071066 * Added general dbxref GOC:mah to synonym sensory transduction of mechanical stimulus during perception of wind of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Added synonym "sensory transduction of wind" to GO:0071066 * Added general dbxref GOC:mah to synonym sensory transduction of wind of GO:0071066 * Changed synonym scope of GO:0071066 from "Related" to "Exact" * Created link GO:0071066 -OBO_REL:is_a-> GO:0050877 * Created link GO:0071066 -OBO_REL:is_a-> GO:0050974 * Created link GO:0071066 -part_of-> GO:0071063 * Assigned namespace "biological_process" to GO:0071066 * [Changed name of GO:0071071 from "null" to "regulation of phospholipid biosynthetic process", Set definition of GO:0071071 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids.", Added definition dbxref GOC:mah to GO:0071071, Added GO:0071071 to category gosubset_prok, Added synonym "regulation of phospholipid anabolism" to GO:0071071, Added general dbxref GOC:mah to synonym regulation of phospholipid anabolism of GO:0071071, Changed synonym scope of GO:0071071 from "Related" to "Exact", Added synonym "regulation of phospholipid biosynthesis" to GO:0071071, Added general dbxref GOC:mah to synonym regulation of phospholipid biosynthesis of GO:0071071, Changed synonym scope of GO:0071071 from "Related" to "Exact", Added synonym "regulation of phospholipid formation" to GO:0071071, Added general dbxref GOC:mah to synonym regulation of phospholipid formation of GO:0071071, Changed synonym scope of GO:0071071 from "Related" to "Exact", Added synonym "regulation of phospholipid synthesis" to GO:0071071, Added general dbxref GOC:mah to synonym regulation of phospholipid synthesis of GO:0071071, Changed synonym scope of GO:0071071 from "Related" to "Exact", Created link GO:0071071 -OBO_REL:is_a-> GO:0046890, Created link GO:0071071 -regulates-> GO:0008654, Created link GO:0071071 -OBO_REL:is_a-> GO:0031326, Assigned namespace "biological_process" to GO:0071071] * Changed name of GO:0071071 from "null" to "regulation of phospholipid biosynthetic process" * Set definition of GO:0071071 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids." * Added definition dbxref GOC:mah to GO:0071071 * Added GO:0071071 to category gosubset_prok * Added synonym "regulation of phospholipid anabolism" to GO:0071071 * Added general dbxref GOC:mah to synonym regulation of phospholipid anabolism of GO:0071071 * Changed synonym scope of GO:0071071 from "Related" to "Exact" * Added synonym "regulation of phospholipid biosynthesis" to GO:0071071 * Added general dbxref GOC:mah to synonym regulation of phospholipid biosynthesis of GO:0071071 * Changed synonym scope of GO:0071071 from "Related" to "Exact" * Added synonym "regulation of phospholipid formation" to GO:0071071 * Added general dbxref GOC:mah to synonym regulation of phospholipid formation of GO:0071071 * Changed synonym scope of GO:0071071 from "Related" to "Exact" * Added synonym "regulation of phospholipid synthesis" to GO:0071071 * Added general dbxref GOC:mah to synonym regulation of phospholipid synthesis of GO:0071071 * Changed synonym scope of GO:0071071 from "Related" to "Exact" * Created link GO:0071071 -OBO_REL:is_a-> GO:0046890 * Created link GO:0071071 -regulates-> GO:0008654 * Created link GO:0071071 -OBO_REL:is_a-> GO:0031326 * Assigned namespace "biological_process" to GO:0071071 * [Changed name of GO:0071072 from "null" to "negative regulation of phospholipid biosynthetic process", Set definition of GO:0071072 to "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids.", Added definition dbxref GOC:mah to GO:0071072, Added GO:0071072 to category gosubset_prok, Added synonym "down regulation of phospholipid biosynthetic process" to GO:0071072, Added general dbxref GOC:mah to synonym down regulation of phospholipid biosynthetic process of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Exact", Added synonym "down-regulation of phospholipid biosynthetic process" to GO:0071072, Added general dbxref GOC:ma to synonym down-regulation of phospholipid biosynthetic process of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Exact", Added synonym "downregulation of phospholipid biosynthetic process" to GO:0071072, Added general dbxref GOC:mah to synonym downregulation of phospholipid biosynthetic process of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Exact", Added synonym "inhibition of phospholipid biosynthetic process" to GO:0071072, Added general dbxref GOC:mah to synonym inhibition of phospholipid biosynthetic process of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Narrow", Added synonym "negative regulation of phospholipid anabolism" to GO:0071072, Added general dbxref GOC:mah to synonym negative regulation of phospholipid anabolism of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Exact", Added synonym "negative regulation of phospholipid biosynthesis" to GO:0071072, Added general dbxref GOC:mah to synonym negative regulation of phospholipid biosynthesis of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Exact", Added synonym "negative regulation of phospholipid formation" to GO:0071072, Added general dbxref GOC:mah to synonym negative regulation of phospholipid f! ormation of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Exact", Added synonym "negative regulation of phospholipid synthesis" to GO:0071072, Added general dbxref GOC:mah to synonym negative regulation of phospholipid synthesis of GO:0071072, Changed synonym scope of GO:0071072 from "Related" to "Exact", Created link GO:0071072 -OBO_REL:is_a-> GO:0031327, Created link GO:0071072 -negatively_regulates-> GO:0008654, Created link GO:0071072 -OBO_REL:is_a-> GO:0051055, Created link GO:0071072 -OBO_REL:is_a-> GO:0071071, Assigned namespace "biological_process" to GO:0071072] * Changed name of GO:0071072 from "null" to "negative regulation of phospholipid biosynthetic process" * Set definition of GO:0071072 to "Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids." * Added definition dbxref GOC:mah to GO:0071072 * Added GO:0071072 to category gosubset_prok * Added synonym "down regulation of phospholipid biosynthetic process" to GO:0071072 * Added general dbxref GOC:mah to synonym down regulation of phospholipid biosynthetic process of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Exact" * Added synonym "down-regulation of phospholipid biosynthetic process" to GO:0071072 * Added general dbxref GOC:ma to synonym down-regulation of phospholipid biosynthetic process of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Exact" * Added synonym "downregulation of phospholipid biosynthetic process" to GO:0071072 * Added general dbxref GOC:mah to synonym downregulation of phospholipid biosynthetic process of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Exact" * Added synonym "inhibition of phospholipid biosynthetic process" to GO:0071072 * Added general dbxref GOC:mah to synonym inhibition of phospholipid biosynthetic process of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Narrow" * Added synonym "negative regulation of phospholipid anabolism" to GO:0071072 * Added general dbxref GOC:mah to synonym negative regulation of phospholipid anabolism of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Exact" * Added synonym "negative regulation of phospholipid biosynthesis" to GO:0071072 * Added general dbxref GOC:mah to synonym negative regulation of phospholipid biosynthesis of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Exact" * Added synonym "negative regulation of phospholipid formation" to GO:0071072 * Added general dbxref GOC:mah to synonym negative regulation of phospholipid formation of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Exact" * Added synonym "negative regulation of phospholipid synthesis" to GO:0071072 * Added general dbxref GOC:mah to synonym negative regulation of phospholipid synthesis of GO:0071072 * Changed synonym scope of GO:0071072 from "Related" to "Exact" * Created link GO:0071072 -OBO_REL:is_a-> GO:0031327 * Created link GO:0071072 -negatively_regulates-> GO:0008654 * Created link GO:0071072 -OBO_REL:is_a-> GO:0051055 * Created link GO:0071072 -OBO_REL:is_a-> GO:0071071 * Assigned namespace "biological_process" to GO:0071072 * [Changed name of GO:0071073 from "null" to "positive regulation of phospholipid biosynthetic process", Set definition of GO:0071073 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids.", Added definition dbxref GOC:mah to GO:0071073, Added GO:0071073 to category gosubset_prok, Added synonym "activation of phospholipid biosynthetic process" to GO:0071073, Added general dbxref GOC:mah to synonym activation of phospholipid biosynthetic process of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Narrow", Added synonym "positive regulation of phospholipid anabolism" to GO:0071073, Added general dbxref GOC:mah to synonym positive regulation of phospholipid anabolism of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Exact", Added synonym "positive regulation of phospholipid biosynthesis" to GO:0071073, Added general dbxref GOC:mah to synonym positive regulation of phospholipid biosynthesis of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Exact", Added synonym "positive regulation of phospholipid formation" to GO:0071073, Added general dbxref GOC:mah to synonym positive regulation of phospholipid formation of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Exact", Added synonym "positive regulation of phospholipid synthesis" to GO:0071073, Added general dbxref GOC:mah to synonym positive regulation of phospholipid synthesis of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Exact", Added synonym "stimulation of phospholipid biosynthetic process" to GO:0071073, Added general dbxref GOC:mah to synonym stimulation of phospholipid biosynthetic process of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Narrow", Added synonym "up regulation of phospholipid biosynthetic process" to GO:0071073, Added general dbxref GOC:mah to synonym up regulation of phospholipid biosynthetic process of GO:0071073, Ch! anged sy nonym scope of GO:0071073 from "Related" to "Exact", Added synonym "up-regulation of phospholipid biosynthetic process" to GO:0071073, Added general dbxref GOC:mah to synonym up-regulation of phospholipid biosynthetic process of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Exact", Added synonym "upregulation of phospholipid biosynthetic process" to GO:0071073, Added general dbxref GOC:mah to synonym upregulation of phospholipid biosynthetic process of GO:0071073, Changed synonym scope of GO:0071073 from "Related" to "Exact", Created link GO:0071073 -OBO_REL:is_a-> GO:0031328, Created link GO:0071073 -OBO_REL:is_a-> GO:0046889, Created link GO:0071073 -positively_regulates-> GO:0008654, Created link GO:0071073 -OBO_REL:is_a-> GO:0071071, Assigned namespace "biological_process" to GO:0071073] * Changed name of GO:0071073 from "null" to "positive regulation of phospholipid biosynthetic process" * Set definition of GO:0071073 to "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids." * Added definition dbxref GOC:mah to GO:0071073 * Added GO:0071073 to category gosubset_prok * Added synonym "activation of phospholipid biosynthetic process" to GO:0071073 * Added general dbxref GOC:mah to synonym activation of phospholipid biosynthetic process of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Narrow" * Added synonym "positive regulation of phospholipid anabolism" to GO:0071073 * Added general dbxref GOC:mah to synonym positive regulation of phospholipid anabolism of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Exact" * Added synonym "positive regulation of phospholipid biosynthesis" to GO:0071073 * Added general dbxref GOC:mah to synonym positive regulation of phospholipid biosynthesis of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Exact" * Added synonym "positive regulation of phospholipid formation" to GO:0071073 * Added general dbxref GOC:mah to synonym positive regulation of phospholipid formation of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Exact" * Added synonym "positive regulation of phospholipid synthesis" to GO:0071073 * Added general dbxref GOC:mah to synonym positive regulation of phospholipid synthesis of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Exact" * Added synonym "stimulation of phospholipid biosynthetic process" to GO:0071073 * Added general dbxref GOC:mah to synonym stimulation of phospholipid biosynthetic process of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Narrow" * Added synonym "up regulation of phospholipid biosynthetic process" to GO:0071073 * Added general dbxref GOC:mah to synonym up regulation of phospholipid biosynthetic process of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Exact" * Added synonym "up-regulation of phospholipid biosynthetic process" to GO:0071073 * Added general dbxref GOC:mah to synonym up-regulation of phospholipid biosynthetic process of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Exact" * Added synonym "upregulation of phospholipid biosynthetic process" to GO:0071073 * Added general dbxref GOC:mah to synonym upregulation of phospholipid biosynthetic process of GO:0071073 * Changed synonym scope of GO:0071073 from "Related" to "Exact" * Created link GO:0071073 -OBO_REL:is_a-> GO:0031328 * Created link GO:0071073 -OBO_REL:is_a-> GO:0046889 * Created link GO:0071073 -positively_regulates-> GO:0008654 * Created link GO:0071073 -OBO_REL:is_a-> GO:0071071 * Assigned namespace "biological_process" to GO:0071073 * [Changed name of GO:0090091 from "null" to "positive regulation of extracellular matrix disassembly", Set definition of GO:0090091 to "Any process that increases the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix.", Added definition dbxref GOC:dph to GO:0090091, Added definition dbxref GOC:tb to GO:0090091, Created link GO:0090091 -OBO_REL:is_a-> GO:0051130, Created link GO:0090091 -OBO_REL:is_a-> GO:0048522, Created link GO:0090091 -OBO_REL:is_a-> GO:0010715, Created link GO:0090091 -positively_regulates-> GO:0022617, Assigned namespace "biological_process" to GO:0090091] * Changed name of GO:0090091 from "null" to "positive regulation of extracellular matrix disassembly" * Set definition of GO:0090091 to "Any process that increases the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix." * Added definition dbxref GOC:dph to GO:0090091 * Added definition dbxref GOC:tb to GO:0090091 * Created link GO:0090091 -OBO_REL:is_a-> GO:0051130 * Created link GO:0090091 -OBO_REL:is_a-> GO:0048522 * Created link GO:0090091 -OBO_REL:is_a-> GO:0010715 * Created link GO:0090091 -positively_regulates-> GO:0022617 * Assigned namespace "biological_process" to GO:0090091 * [Changed name of GO:0090092 from "null" to "regulation of transmembrane receptor protein serine/threonine kinase signaling pathway", Set definition of GO:0090092 to "Any process that modulates the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.", Added definition dbxref GOC:dph to GO:0090092, Added definition dbxref GOC:tb to GO:0090092, Created link GO:0090092 -OBO_REL:is_a-> GO:0009966, Created link GO:0090092 -regulates-> GO:0007178, Assigned namespace "biological_process" to GO:0090092] * Changed name of GO:0090092 from "null" to "regulation of transmembrane receptor protein serine/threonine kinase signaling pathway" * Set definition of GO:0090092 to "Any process that modulates the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand." * Added definition dbxref GOC:dph to GO:0090092 * Added definition dbxref GOC:tb to GO:0090092 * Created link GO:0090092 -OBO_REL:is_a-> GO:0009966 * Created link GO:0090092 -regulates-> GO:0007178 * Assigned namespace "biological_process" to GO:0090092 * Deleted GO:0000438 --part_of--> GO:0070985 * Changed name of GO:0006576 from "biogenic amine metabolic process" to "cellular biogenic amine metabolic process" * Changed definition of GO:0006576 from "The chemical reactions and pathways involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters." to "The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters." * Deleted GO:0006576 --OBO_REL:is_a--> GO:0009308 * Created link GO:0006576 -OBO_REL:is_a-> GO:0044106 * Created link GO:0007114 -OBO_REL:is_a-> GO:0051301 * Created link GO:0010843 -OBO_REL:is_a-> GO:0044212 * Deleted GO:0017015 --OBO_REL:is_a--> GO:0009966 * Created link GO:0017015 -OBO_REL:is_a-> GO:0090092 * Deleted GO:0030510 --OBO_REL:is_a--> GO:0017015 * Created link GO:0030510 -OBO_REL:is_a-> GO:0090092 * Deleted GO:0032271 --OBO_REL:is_a--> GO:0032268 * Created link GO:0032422 -OBO_REL:is_a-> GO:0044212 * Deleted GO:0032925 --OBO_REL:is_a--> GO:0009966 * Created link GO:0032925 -OBO_REL:is_a-> GO:0090092 * Changed name of GO:0042401 from "biogenic amine biosynthetic process" to "cellular biogenic amine biosynthetic process" * Changed definition of GO:0042401 from "The chemical reactions and pathways resulting in the formation of any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters." to "The chemical reactions and pathways occurring at the level of individual cells resulting in the formation of any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters." * Changed name of GO:0042402 from "biogenic amine catabolic process" to "cellular biogenic amine catabolic process" * Changed definition of GO:0042402 from "The chemical reactions and pathways resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters." to "The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters." * Deleted GO:0042403 --OBO_REL:is_a--> GO:0006576 * Created link GO:0042403 -OBO_REL:is_a-> GO:0009308 * Deleted GO:0042404 --OBO_REL:is_a--> GO:0042402 * Created link GO:0042404 -OBO_REL:is_a-> GO:0009310 * Deleted GO:0043664 --OBO_REL:is_a--> GO:0044444 * Deleted GO:0043665 --OBO_REL:is_a--> GO:0044444 * Deleted GO:0045916 --OBO_REL:is_a--> GO:0045861 * Deleted GO:0045917 --OBO_REL:is_a--> GO:0045862 * Deleted GO:0046320 --OBO_REL:is_a--> GO:0060255 * Deleted GO:0046321 --OBO_REL:is_a--> GO:0010604 * Deleted GO:0046322 --OBO_REL:is_a--> GO:0010605 * Deleted GO:0060390 --OBO_REL:is_a--> GO:0017015 * Created link GO:0060390 -OBO_REL:is_a-> GO:0090092 * Deleted GO:0060393 --OBO_REL:is_a--> GO:0017015 * Created link GO:0060393 -OBO_REL:is_a-> GO:0090092 * Deleted GO:0070857 --OBO_REL:is_a--> GO:0090030 * Deleted GO:0070858 --OBO_REL:is_a--> GO:0090032 * Deleted GO:0070859 --OBO_REL:is_a--> GO:0090031 * Deleted definition dbxref PMID: from GO:0071069 * Added definition dbxref PMID:11980922 to GO:0071069 * Deleted definition dbxref PMID: from GO:0071070 * Added definition dbxref PMID:11980922 to GO:0071070 From gocvs at genome.stanford.edu Fri Nov 6 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 6 Nov 2009 21:30:12 -0800 Subject: [Go-diff] GO update 11/06/2009 Message-ID: <200911070530.nA75UCxd025845@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.875 by 1.876 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0071074 * Created object of type obo:TERM with id GO:0071075 * Created object of type obo:TERM with id GO:0071076 * Created object of type obo:TERM with id GO:0071077 * Created object of type obo:TERM with id GO:0071078 * Created object of type obo:TERM with id GO:0071079 * Created object of type obo:TERM with id GO:0071080 * Created object of type obo:TERM with id GO:0071081 * Created object of type obo:TERM with id GO:0071082 * Created object of type obo:TERM with id GO:0071083 * Created object of type obo:TERM with id GO:0071084 * Created object of type obo:TERM with id GO:0071085 * Created object of type obo:TERM with id GO:0071086 * Created object of type obo:TERM with id GO:0071087 * Created object of type obo:TERM with id GO:0071088 * Created object of type obo:TERM with id GO:0071089 * Created object of type obo:TERM with id GO:0071090 * Created object of type obo:TERM with id GO:0071091 * Created object of type obo:TERM with id GO:0071092 * Created object of type obo:TERM with id GO:0071093 * Created object of type obo:TERM with id GO:0071094 * Created object of type obo:TERM with id GO:0071095 * Created object of type obo:TERM with id GO:0071096 * Created object of type obo:TERM with id GO:0071097 * Created object of type obo:TERM with id GO:0071098 * Created object of type obo:TERM with id GO:0071099 * Created object of type obo:TERM with id GO:0071100 * Created object of type obo:TERM with id GO:0071101 * Created object of type obo:TERM with id GO:0071102 * [Changed name of GO:0071074 from "null" to "eukaryotic initiation factor eIF2 binding", Set definition of GO:0071074 to "Interacting selectively and non-covalently with eukaryotic initiation factor eIF2, a protein complex involved in the initiation of ribosome-mediated translation.", Added definition dbxref GOC:hjd to GO:0071074, Created link GO:0071074 -OBO_REL:is_a-> GO:0031369, Assigned namespace "molecular_function" to GO:0071074] * Changed name of GO:0071074 from "null" to "eukaryotic initiation factor eIF2 binding" * Set definition of GO:0071074 to "Interacting selectively and non-covalently with eukaryotic initiation factor eIF2, a protein complex involved in the initiation of ribosome-mediated translation." * Added definition dbxref GOC:hjd to GO:0071074 * Created link GO:0071074 -OBO_REL:is_a-> GO:0031369 * Assigned namespace "molecular_function" to GO:0071074 * [Changed name of GO:0071075 from "null" to "CUGBP1-eIF2 complex", Set definition of GO:0071075 to "A protein complex that contains the eukaryotic translation initiation factor 2 complex (EIF2), CUG binding protein 1, and several endoplasmic reticulum proteins; the complex is involved in the regulation of translation.", Added definition dbxref PMID:16931514 to GO:0071075, Created link GO:0071075 -OBO_REL:is_a-> GO:0044444, Created link GO:0071075 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071075] * Changed name of GO:0071075 from "null" to "CUGBP1-eIF2 complex" * Set definition of GO:0071075 to "A protein complex that contains the eukaryotic translation initiation factor 2 complex (EIF2), CUG binding protein 1, and several endoplasmic reticulum proteins; the complex is involved in the regulation of translation." * Added definition dbxref PMID:16931514 to GO:0071075 * Created link GO:0071075 -OBO_REL:is_a-> GO:0044444 * Created link GO:0071075 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071075 * [Changed name of GO:0071076 from "null" to "RNA 3' uridylation", Set definition of GO:0071076 to "The enzymatic addition of a sequence of uridylyl residues at the 3' end of an RNA molecule.", Added definition dbxref GOC:vw to GO:0071076, Added definition dbxref PMID:19430462 to GO:0071076, Created link GO:0071076 -OBO_REL:is_a-> GO:0031123, Assigned namespace "biological_process" to GO:0071076] * Changed name of GO:0071076 from "null" to "RNA 3' uridylation" * Set definition of GO:0071076 to "The enzymatic addition of a sequence of uridylyl residues at the 3' end of an RNA molecule." * Added definition dbxref GOC:vw to GO:0071076 * Added definition dbxref PMID:19430462 to GO:0071076 * Created link GO:0071076 -OBO_REL:is_a-> GO:0031123 * Assigned namespace "biological_process" to GO:0071076 * [Changed name of GO:0071077 from "null" to "adenosine 3',5'-bisphosphate transmembrane transporter activity", Set definition of GO:0071077 to "Catalysis of the transfer of adenosine 3',5'-bisphosphate from one side of a membrane to the other.", Added definition dbxref ChEBI:37240 to GO:0071077, Added definition dbxref GOC:mah to GO:0071077, Added definition dbxref PubChem:159296 to GO:0071077, Added synonym "adenosine 3',5'-diphosphate transporter activity" to GO:0071077, Added general dbxref PubChem:159296 to synonym adenosine 3',5'-diphosphate transporter activity of GO:0071077, Changed synonym scope of GO:0071077 from "Related" to "Exact", Added synonym "adenosine 3'-phosphate-5'-phosphate transmembrane transporter activity" to GO:0071077, Added general dbxref PubChem:159296 to synonym adenosine 3'-phosphate-5'-phosphate transmembrane transporter activity of GO:0071077, Changed synonym scope of GO:0071077 from "Related" to "Exact", Created link GO:0071077 -OBO_REL:is_a-> GO:0015211, Assigned namespace "molecular_function" to GO:0071077] * Changed name of GO:0071077 from "null" to "adenosine 3',5'-bisphosphate transmembrane transporter activity" * Set definition of GO:0071077 to "Catalysis of the transfer of adenosine 3',5'-bisphosphate from one side of a membrane to the other." * Added definition dbxref ChEBI:37240 to GO:0071077 * Added definition dbxref GOC:mah to GO:0071077 * Added definition dbxref PubChem:159296 to GO:0071077 * Added synonym "adenosine 3',5'-diphosphate transporter activity" to GO:0071077 * Added general dbxref PubChem:159296 to synonym adenosine 3',5'-diphosphate transporter activity of GO:0071077 * Changed synonym scope of GO:0071077 from "Related" to "Exact" * Added synonym "adenosine 3'-phosphate-5'-phosphate transmembrane transporter activity" to GO:0071077 * Added general dbxref PubChem:159296 to synonym adenosine 3'-phosphate-5'-phosphate transmembrane transporter activity of GO:0071077 * Changed synonym scope of GO:0071077 from "Related" to "Exact" * Created link GO:0071077 -OBO_REL:is_a-> GO:0015211 * Assigned namespace "molecular_function" to GO:0071077 * [Changed name of GO:0071078 from "null" to "fibronectin-tissue transglutaminase complex", Set definition of GO:0071078 to "A protein complex that consists of fibronectin bound to tissue transglutaminase, and is involved in cell adhesion.", Added definition dbxref PMID:10684262 to GO:0071078, Added synonym "FN-TGM2 complex" to GO:0071078, Added general dbxref CORUM:2375 to synonym FN-TGM2 complex of GO:0071078, Changed synonym scope of GO:0071078 from "Related" to "Narrow", Created link GO:0071078 -OBO_REL:is_a-> GO:0044459, Created link GO:0071078 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071078] * Changed name of GO:0071078 from "null" to "fibronectin-tissue transglutaminase complex" * Set definition of GO:0071078 to "A protein complex that consists of fibronectin bound to tissue transglutaminase, and is involved in cell adhesion." * Added definition dbxref PMID:10684262 to GO:0071078 * Added synonym "FN-TGM2 complex" to GO:0071078 * Added general dbxref CORUM:2375 to synonym FN-TGM2 complex of GO:0071078 * Changed synonym scope of GO:0071078 from "Related" to "Narrow" * Created link GO:0071078 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071078 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071078 * [Changed name of GO:0071079 from "null" to "alpha2-beta1 integrin-chondroadherin complex", Set definition of GO:0071079 to "A protein complex that consists of an alpha2-beta1 integrin complex bound to the cartilage matrix protein chondroadherin.", Added definition dbxref PMID:9281592 to GO:0071079, Added synonym "ITGA2-ITGB1-CHAD complex" to GO:0071079, Added general dbxref CORUM:2430 to synonym ITGA2-ITGB1-CHAD complex of GO:0071079, Changed synonym scope of GO:0071079 from "Related" to "Narrow", Created link GO:0071079 -OBO_REL:is_a-> GO:0043234, Created link GO:0071079 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071079] * Changed name of GO:0071079 from "null" to "alpha2-beta1 integrin-chondroadherin complex" * Set definition of GO:0071079 to "A protein complex that consists of an alpha2-beta1 integrin complex bound to the cartilage matrix protein chondroadherin." * Added definition dbxref PMID:9281592 to GO:0071079 * Added synonym "ITGA2-ITGB1-CHAD complex" to GO:0071079 * Added general dbxref CORUM:2430 to synonym ITGA2-ITGB1-CHAD complex of GO:0071079 * Changed synonym scope of GO:0071079 from "Related" to "Narrow" * Created link GO:0071079 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071079 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071079 * [Changed name of GO:0071080 from "null" to "alpha3-beta1 integrin-basigin complex", Set definition of GO:0071080 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to the cell surface protein basigin.", Added definition dbxref PMID:9360995 to GO:0071080, Added synonym "ITGA3-ITGB1-BSG complex" to GO:0071080, Added general dbxref CORUM:2398 to synonym ITGA3-ITGB1-BSG complex of GO:0071080, Changed synonym scope of GO:0071080 from "Related" to "Narrow", Created link GO:0071080 -OBO_REL:is_a-> GO:0044459, Created link GO:0071080 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071080] * Changed name of GO:0071080 from "null" to "alpha3-beta1 integrin-basigin complex" * Set definition of GO:0071080 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to the cell surface protein basigin." * Added definition dbxref PMID:9360995 to GO:0071080 * Added synonym "ITGA3-ITGB1-BSG complex" to GO:0071080 * Added general dbxref CORUM:2398 to synonym ITGA3-ITGB1-BSG complex of GO:0071080 * Changed synonym scope of GO:0071080 from "Related" to "Narrow" * Created link GO:0071080 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071080 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071080 * [Changed name of GO:0071081 from "null" to "alpha3-beta1 integrin-CD63 complex", Set definition of GO:0071081 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to the tetraspanin CD63.", Added definition dbxref PMID:7629079 to GO:0071081, Added synonym "ITGA3-ITGB1-CD63 complex" to GO:0071081, Added general dbxref CORUM:2399 to synonym ITGA3-ITGB1-CD63 complex of GO:0071081, Changed synonym scope of GO:0071081 from "Related" to "Narrow", Created link GO:0071081 -OBO_REL:is_a-> GO:0044459, Created link GO:0071081 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071081] * Changed name of GO:0071081 from "null" to "alpha3-beta1 integrin-CD63 complex" * Set definition of GO:0071081 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to the tetraspanin CD63." * Added definition dbxref PMID:7629079 to GO:0071081 * Added synonym "ITGA3-ITGB1-CD63 complex" to GO:0071081 * Added general dbxref CORUM:2399 to synonym ITGA3-ITGB1-CD63 complex of GO:0071081 * Changed synonym scope of GO:0071081 from "Related" to "Narrow" * Created link GO:0071081 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071081 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071081 * [Changed name of GO:0071082 from "null" to "alpha9-beta1 integrin-tenascin complex", Set definition of GO:0071082 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the extracellular matrix protein tenascin.", Added definition dbxref PMID:9565552 to GO:0071082, Added synonym "ITGA9-ITGB1-TNC complex" to GO:0071082, Added general dbxref CORUM:2443 to synonym ITGA9-ITGB1-TNC complex of GO:0071082, Changed synonym scope of GO:0071082 from "Related" to "Narrow", Created link GO:0071082 -OBO_REL:is_a-> GO:0044459, Created link GO:0071082 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071082] * Changed name of GO:0071082 from "null" to "alpha9-beta1 integrin-tenascin complex" * Set definition of GO:0071082 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the extracellular matrix protein tenascin." * Added definition dbxref PMID:9565552 to GO:0071082 * Added synonym "ITGA9-ITGB1-TNC complex" to GO:0071082 * Added general dbxref CORUM:2443 to synonym ITGA9-ITGB1-TNC complex of GO:0071082 * Changed synonym scope of GO:0071082 from "Related" to "Narrow" * Created link GO:0071082 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071082 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071082 * [Changed name of GO:0071083 from "null" to "alphaV-beta3 integrin-CD47-FCER2 complex", Set definition of GO:0071083 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to the cell surface protein CD47 and the low-affinity immunoglobulin epsilon Fc receptor (FCER2).", Added definition dbxref PMID:10037797 to GO:0071083, Added synonym "ITGAV-ITGB3-CD447-FCER2 complex" to GO:0071083, Added general dbxref CORUM:2355 to synonym ITGAV-ITGB3-CD447-FCER2 complex of GO:0071083, Changed synonym scope of GO:0071083 from "Related" to "Narrow", Created link GO:0071083 -OBO_REL:is_a-> GO:0043234, Created link GO:0071083 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071083] * Changed name of GO:0071083 from "null" to "alphaV-beta3 integrin-CD47-FCER2 complex" * Set definition of GO:0071083 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to the cell surface protein CD47 and the low-affinity immunoglobulin epsilon Fc receptor (FCER2)." * Added definition dbxref PMID:10037797 to GO:0071083 * Added synonym "ITGAV-ITGB3-CD447-FCER2 complex" to GO:0071083 * Added general dbxref CORUM:2355 to synonym ITGAV-ITGB3-CD447-FCER2 complex of GO:0071083 * Changed synonym scope of GO:0071083 from "Related" to "Narrow" * Created link GO:0071083 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071083 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071083 * [Changed name of GO:0071084 from "null" to "alpha2-beta1 integrin-CD47 complex", Set definition of GO:0071084 to "A protein complex that consists of an alpha2-beta1 integrin complex bound to the cell surface protein CD47.", Added definition dbxref PMID:10397731 to GO:0071084, Added synonym "ITGA2-ITGB1-CD47 complex" to GO:0071084, Added general dbxref CORUM:2429 to synonym ITGA2-ITGB1-CD47 complex of GO:0071084, Changed synonym scope of GO:0071084 from "Related" to "Narrow", Created link GO:0071084 -OBO_REL:is_a-> GO:0043234, Created link GO:0071084 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071084] * Changed name of GO:0071084 from "null" to "alpha2-beta1 integrin-CD47 complex" * Set definition of GO:0071084 to "A protein complex that consists of an alpha2-beta1 integrin complex bound to the cell surface protein CD47." * Added definition dbxref PMID:10397731 to GO:0071084 * Added synonym "ITGA2-ITGB1-CD47 complex" to GO:0071084 * Added general dbxref CORUM:2429 to synonym ITGA2-ITGB1-CD47 complex of GO:0071084 * Changed synonym scope of GO:0071084 from "Related" to "Narrow" * Created link GO:0071084 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071084 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071084 * [Changed name of GO:0071085 from "null" to "alphaIIb-beta3 integrin-CD9 complex", Set definition of GO:0071085 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface protein CD9.", Added definition dbxref PMID:10429193 to GO:0071085, Added synonym "ITGA2b-ITGB3-CD9 complex" to GO:0071085, Added general dbxref CORUM:2370 to synonym ITGA2b-ITGB3-CD9 complex of GO:0071085, Changed synonym scope of GO:0071085 from "Related" to "Narrow", Created link GO:0071085 -OBO_REL:is_a-> GO:0044459, Created link GO:0071085 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071085] * Changed name of GO:0071085 from "null" to "alphaIIb-beta3 integrin-CD9 complex" * Set definition of GO:0071085 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface protein CD9." * Added definition dbxref PMID:10429193 to GO:0071085 * Added synonym "ITGA2b-ITGB3-CD9 complex" to GO:0071085 * Added general dbxref CORUM:2370 to synonym ITGA2b-ITGB3-CD9 complex of GO:0071085 * Changed synonym scope of GO:0071085 from "Related" to "Narrow" * Created link GO:0071085 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071085 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071085 * [Changed name of GO:0071086 from "null" to "alphaIIb-beta3 integrin-CD9-CD47-platelet glycoprotein Ib complex", Set definition of GO:0071086 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface proteins CD9 and CD47, and the heterodimeric platelet glycoprotein Ib.", Added definition dbxref PMID:10429193 to GO:0071086, Added synonym "ITGA2b-ITGB3-CD9-GP1b-CD47 complex" to GO:0071086, Added general dbxref CORUM:2872 to synonym ITGA2b-ITGB3-CD9-GP1b-CD47 complex of GO:0071086, Changed synonym scope of GO:0071086 from "Related" to "Narrow", Created link GO:0071086 -OBO_REL:is_a-> GO:0043234, Created link GO:0071086 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071086] * Changed name of GO:0071086 from "null" to "alphaIIb-beta3 integrin-CD9-CD47-platelet glycoprotein Ib complex" * Set definition of GO:0071086 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface proteins CD9 and CD47, and the heterodimeric platelet glycoprotein Ib." * Added definition dbxref PMID:10429193 to GO:0071086 * Added synonym "ITGA2b-ITGB3-CD9-GP1b-CD47 complex" to GO:0071086 * Added general dbxref CORUM:2872 to synonym ITGA2b-ITGB3-CD9-GP1b-CD47 complex of GO:0071086 * Changed synonym scope of GO:0071086 from "Related" to "Narrow" * Created link GO:0071086 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071086 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071086 * [Changed name of GO:0071087 from "null" to "alpha11-beta1 integrin-collagen type I complex", Set definition of GO:0071087 to "A protein complex that consists of an alpha11-beta1 integrin complex bound to a type I collagen.", Added definition dbxref PMID:10464311 to GO:0071087, Added synonym "ITGA11-ITGB1-COL1A1 complex" to GO:0071087, Added general dbxref CORUM:3059 to synonym ITGA11-ITGB1-COL1A1 complex of GO:0071087, Changed synonym scope of GO:0071087 from "Related" to "Narrow", Created link GO:0071087 -OBO_REL:is_a-> GO:0044459, Created link GO:0071087 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071087] * Changed name of GO:0071087 from "null" to "alpha11-beta1 integrin-collagen type I complex" * Set definition of GO:0071087 to "A protein complex that consists of an alpha11-beta1 integrin complex bound to a type I collagen." * Added definition dbxref PMID:10464311 to GO:0071087 * Added synonym "ITGA11-ITGB1-COL1A1 complex" to GO:0071087 * Added general dbxref CORUM:3059 to synonym ITGA11-ITGB1-COL1A1 complex of GO:0071087 * Changed synonym scope of GO:0071087 from "Related" to "Narrow" * Created link GO:0071087 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071087 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071087 * [Changed name of GO:0071088 from "null" to "alpha5-beta1 integrin-tissue transglutaminase complex", Set definition of GO:0071088 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to tissue transglutaminase.", Added definition dbxref PMID:10684262 to GO:0071088, Added synonym "ITGA5-ITGB1-TGM2 complex" to GO:0071088, Added general dbxref CORUM:2433 to synonym ITGA5-ITGB1-TGM2 complex of GO:0071088, Changed synonym scope of GO:0071088 from "Related" to "Narrow", Created link GO:0071088 -OBO_REL:is_a-> GO:0044459, Created link GO:0071088 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071088] * Changed name of GO:0071088 from "null" to "alpha5-beta1 integrin-tissue transglutaminase complex" * Set definition of GO:0071088 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to tissue transglutaminase." * Added definition dbxref PMID:10684262 to GO:0071088 * Added synonym "ITGA5-ITGB1-TGM2 complex" to GO:0071088 * Added general dbxref CORUM:2433 to synonym ITGA5-ITGB1-TGM2 complex of GO:0071088 * Changed synonym scope of GO:0071088 from "Related" to "Narrow" * Created link GO:0071088 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071088 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071088 * [Changed name of GO:0071089 from "null" to "alphaV-beta3 integrin-tissue transglutaminase complex", Set definition of GO:0071089 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to tissue transglutaminase.", Added definition dbxref PMID:10684262 to GO:0071089, Added synonym "ITGAV-ITGB3-TGM2 complex" to GO:0071089, Added general dbxref CORUM:3095 to synonym ITGAV-ITGB3-TGM2 complex of GO:0071089, Changed synonym scope of GO:0071089 from "Related" to "Narrow", Created link GO:0071089 -OBO_REL:is_a-> GO:0044459, Created link GO:0071089 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071089] * Changed name of GO:0071089 from "null" to "alphaV-beta3 integrin-tissue transglutaminase complex" * Set definition of GO:0071089 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to tissue transglutaminase." * Added definition dbxref PMID:10684262 to GO:0071089 * Added synonym "ITGAV-ITGB3-TGM2 complex" to GO:0071089 * Added general dbxref CORUM:3095 to synonym ITGAV-ITGB3-TGM2 complex of GO:0071089 * Changed synonym scope of GO:0071089 from "Related" to "Narrow" * Created link GO:0071089 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071089 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071089 * [Changed name of GO:0071090 from "null" to "alphaIIb-beta3 integrin-fibronectin-tissue transglutaminase complex", Set definition of GO:0071090 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to fibronectin and tissue transglutaminase.", Added definition dbxref PMID:10684262 to GO:0071090, Added synonym "ITGA2b-ITGB3-FN1-TGM2 complex" to GO:0071090, Added general dbxref CORUM:2376 to synonym ITGA2b-ITGB3-FN1-TGM2 complex of GO:0071090, Changed synonym scope of GO:0071090 from "Related" to "Narrow", Created link GO:0071090 -OBO_REL:is_a-> GO:0044459, Created link GO:0071090 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071090] * Changed name of GO:0071090 from "null" to "alphaIIb-beta3 integrin-fibronectin-tissue transglutaminase complex" * Set definition of GO:0071090 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to fibronectin and tissue transglutaminase." * Added definition dbxref PMID:10684262 to GO:0071090 * Added synonym "ITGA2b-ITGB3-FN1-TGM2 complex" to GO:0071090 * Added general dbxref CORUM:2376 to synonym ITGA2b-ITGB3-FN1-TGM2 complex of GO:0071090 * Changed synonym scope of GO:0071090 from "Related" to "Narrow" * Created link GO:0071090 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071090 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071090 * [Changed name of GO:0071091 from "null" to "alpha1-beta1 integrin-tissue transglutaminase complex", Set definition of GO:0071091 to "A protein complex that consists of an alpha1-beta1 integrin complex bound to tissue transglutaminase.", Added definition dbxref PMID:10684262 to GO:0071091, Added synonym "ITGA1-ITGB1-TGM2 complex" to GO:0071091, Added general dbxref CORUM:2894 to synonym ITGA1-ITGB1-TGM2 complex of GO:0071091, Changed synonym scope of GO:0071091 from "Related" to "Narrow", Created link GO:0071091 -OBO_REL:is_a-> GO:0043234, Created link GO:0071091 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071091] * Changed name of GO:0071091 from "null" to "alpha1-beta1 integrin-tissue transglutaminase complex" * Set definition of GO:0071091 to "A protein complex that consists of an alpha1-beta1 integrin complex bound to tissue transglutaminase." * Added definition dbxref PMID:10684262 to GO:0071091 * Added synonym "ITGA1-ITGB1-TGM2 complex" to GO:0071091 * Added general dbxref CORUM:2894 to synonym ITGA1-ITGB1-TGM2 complex of GO:0071091 * Changed synonym scope of GO:0071091 from "Related" to "Narrow" * Created link GO:0071091 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071091 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071091 * [Changed name of GO:0071092 from "null" to "alpha3-beta1 integrin-tissue transglutaminase complex", Set definition of GO:0071092 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to tissue transglutaminase.", Added definition dbxref PMID:10684262 to GO:0071092, Added synonym "ITGA3-ITGB1-TGM2 complex" to GO:0071092, Added general dbxref CORUM:2402 to synonym ITGA3-ITGB1-TGM2 complex of GO:0071092, Changed synonym scope of GO:0071092 from "Related" to "Narrow", Created link GO:0071092 -OBO_REL:is_a-> GO:0044459, Created link GO:0071092 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071092] * Changed name of GO:0071092 from "null" to "alpha3-beta1 integrin-tissue transglutaminase complex" * Set definition of GO:0071092 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to tissue transglutaminase." * Added definition dbxref PMID:10684262 to GO:0071092 * Added synonym "ITGA3-ITGB1-TGM2 complex" to GO:0071092 * Added general dbxref CORUM:2402 to synonym ITGA3-ITGB1-TGM2 complex of GO:0071092 * Changed synonym scope of GO:0071092 from "Related" to "Narrow" * Created link GO:0071092 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071092 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071092 * [Changed name of GO:0071093 from "null" to "alpha5-beta1 integrin-fibronectin-tissue transglutaminase complex", Set definition of GO:0071093 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to fibronectin and tissue transglutaminase.", Added definition dbxref PMID:10684262 to GO:0071093, Added synonym "ITGA5-ITGB1-FN1-TGM2 complex" to GO:0071093, Added general dbxref CORUM:2383 to synonym ITGA5-ITGB1-FN1-TGM2 complex of GO:0071093, Changed synonym scope of GO:0071093 from "Related" to "Narrow", Created link GO:0071093 -OBO_REL:is_a-> GO:0044459, Created link GO:0071093 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071093] * Changed name of GO:0071093 from "null" to "alpha5-beta1 integrin-fibronectin-tissue transglutaminase complex" * Set definition of GO:0071093 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to fibronectin and tissue transglutaminase." * Added definition dbxref PMID:10684262 to GO:0071093 * Added synonym "ITGA5-ITGB1-FN1-TGM2 complex" to GO:0071093 * Added general dbxref CORUM:2383 to synonym ITGA5-ITGB1-FN1-TGM2 complex of GO:0071093 * Changed synonym scope of GO:0071093 from "Related" to "Narrow" * Created link GO:0071093 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071093 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071093 * [Changed name of GO:0071094 from "null" to "alpha6-beta4 integrin-CD9 complex", Set definition of GO:0071094 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to the cell surface protein CD9.", Added definition dbxref PMID:10711425 to GO:0071094, Added synonym "ITGA6-ITGB4-CD9 complex" to GO:0071094, Added general dbxref CORUM:2770 to synonym ITGA6-ITGB4-CD9 complex of GO:0071094, Changed synonym scope of GO:0071094 from "Related" to "Narrow", Created link GO:0071094 -OBO_REL:is_a-> GO:0043234, Created link GO:0071094 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071094] * Changed name of GO:0071094 from "null" to "alpha6-beta4 integrin-CD9 complex" * Set definition of GO:0071094 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to the cell surface protein CD9." * Added definition dbxref PMID:10711425 to GO:0071094 * Added synonym "ITGA6-ITGB4-CD9 complex" to GO:0071094 * Added general dbxref CORUM:2770 to synonym ITGA6-ITGB4-CD9 complex of GO:0071094 * Changed synonym scope of GO:0071094 from "Related" to "Narrow" * Created link GO:0071094 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071094 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071094 * [Changed name of GO:0071095 from "null" to "alpha3-beta1 integrin-thrombospondin complex", Set definition of GO:0071095 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to thrombospondin.", Added definition dbxref PMID:11358957 to GO:0071095, Added synonym "ITGA3-ITGB1-THBS1 complex" to GO:0071095, Added general dbxref CORUM:2401 to synonym ITGA3-ITGB1-THBS1 complex of GO:0071095, Changed synonym scope of GO:0071095 from "Related" to "Narrow", Created link GO:0071095 -OBO_REL:is_a-> GO:0044459, Created link GO:0071095 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071095] * Changed name of GO:0071095 from "null" to "alpha3-beta1 integrin-thrombospondin complex" * Set definition of GO:0071095 to "A protein complex that consists of an alpha3-beta1 integrin complex bound to thrombospondin." * Added definition dbxref PMID:11358957 to GO:0071095 * Added synonym "ITGA3-ITGB1-THBS1 complex" to GO:0071095 * Added general dbxref CORUM:2401 to synonym ITGA3-ITGB1-THBS1 complex of GO:0071095 * Changed synonym scope of GO:0071095 from "Related" to "Narrow" * Created link GO:0071095 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071095 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071095 * [Changed name of GO:0071096 from "null" to "alphaV-beta3 integrin-gelsolin complex", Set definition of GO:0071096 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to gelsolin.", Added definition dbxref PMID:11577104 to GO:0071096, Added synonym "ITGAV-ITGB3-Gsn complex" to GO:0071096, Added general dbxref CORUM:2360 to synonym ITGAV-ITGB3-Gsn complex of GO:0071096, Changed synonym scope of GO:0071096 from "Related" to "Narrow", Created link GO:0071096 -OBO_REL:is_a-> GO:0043234, Created link GO:0071096 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071096] * Changed name of GO:0071096 from "null" to "alphaV-beta3 integrin-gelsolin complex" * Set definition of GO:0071096 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to gelsolin." * Added definition dbxref PMID:11577104 to GO:0071096 * Added synonym "ITGAV-ITGB3-Gsn complex" to GO:0071096 * Added general dbxref CORUM:2360 to synonym ITGAV-ITGB3-Gsn complex of GO:0071096 * Changed synonym scope of GO:0071096 from "Related" to "Narrow" * Created link GO:0071096 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071096 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071096 * [Changed name of GO:0071097 from "null" to "alphaV-beta3 integrin-paxillin-Pyk2 complex", Set definition of GO:0071097 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to paxillin and the the FAK-related kinase Pyk2.", Added definition dbxref PMID:11683411 to GO:0071097, Added synonym "ITGAV-ITGB3-PXN-PTK2b complex" to GO:0071097, Added general dbxref CORUM:2363 to synonym ITGAV-ITGB3-PXN-PTK2b complex of GO:0071097, Changed synonym scope of GO:0071097 from "Related" to "Narrow", Created link GO:0071097 -OBO_REL:is_a-> GO:0043234, Created link GO:0071097 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071097] * Changed name of GO:0071097 from "null" to "alphaV-beta3 integrin-paxillin-Pyk2 complex" * Set definition of GO:0071097 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to paxillin and the the FAK-related kinase Pyk2." * Added definition dbxref PMID:11683411 to GO:0071097 * Added synonym "ITGAV-ITGB3-PXN-PTK2b complex" to GO:0071097 * Added general dbxref CORUM:2363 to synonym ITGAV-ITGB3-PXN-PTK2b complex of GO:0071097 * Changed synonym scope of GO:0071097 from "Related" to "Narrow" * Created link GO:0071097 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071097 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071097 * [Changed name of GO:0071098 from "null" to "alpha6-beta4 integrin-Fyn complex", Set definition of GO:0071098 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to the Src family tyrosine kinase Fyn.", Added definition dbxref PMID:11684709 to GO:0071098, Added synonym "ITGA6-ITGB4-FYN complex" to GO:0071098, Added general dbxref CORUM:2321 to synonym ITGA6-ITGB4-FYN complex of GO:0071098, Changed synonym scope of GO:0071098 from "Related" to "Narrow", Created link GO:0071098 -OBO_REL:is_a-> GO:0043234, Created link GO:0071098 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071098] * Changed name of GO:0071098 from "null" to "alpha6-beta4 integrin-Fyn complex" * Set definition of GO:0071098 to "A protein complex that consists of an alpha6-beta4 integrin complex bound to the Src family tyrosine kinase Fyn." * Added definition dbxref PMID:11684709 to GO:0071098 * Added synonym "ITGA6-ITGB4-FYN complex" to GO:0071098 * Added general dbxref CORUM:2321 to synonym ITGA6-ITGB4-FYN complex of GO:0071098 * Changed synonym scope of GO:0071098 from "Related" to "Narrow" * Created link GO:0071098 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071098 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071098 * [Changed name of GO:0071099 from "null" to "alphaV-beta6 integrin-TGFbeta-3 complex", Set definition of GO:0071099 to "A protein complex that consists of an alphaV-beta6 integrin complex bound to transforming growth factor beta-3 (TGFbeta-3).", Added definition dbxref PMID:11821050 to GO:0071099, Added synonym "ITGAV-ITGB6-TFGB3 complex" to GO:0071099, Added general dbxref CORUM:2353 to synonym ITGAV-ITGB6-TFGB3 complex of GO:0071099, Changed synonym scope of GO:0071099 from "Related" to "Narrow", Created link GO:0071099 -OBO_REL:is_a-> GO:0043234, Created link GO:0071099 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071099] * Changed name of GO:0071099 from "null" to "alphaV-beta6 integrin-TGFbeta-3 complex" * Set definition of GO:0071099 to "A protein complex that consists of an alphaV-beta6 integrin complex bound to transforming growth factor beta-3 (TGFbeta-3)." * Added definition dbxref PMID:11821050 to GO:0071099 * Added synonym "ITGAV-ITGB6-TFGB3 complex" to GO:0071099 * Added general dbxref CORUM:2353 to synonym ITGAV-ITGB6-TFGB3 complex of GO:0071099 * Changed synonym scope of GO:0071099 from "Related" to "Narrow" * Created link GO:0071099 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071099 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071099 * [Changed name of GO:0071100 from "null" to "alphaV-beta8 integrin-MMP14-TGFbeta-1 complex", Set definition of GO:0071100 to "A protein complex that consists of an alphaV-beta8 integrin complex bound to matrix metalloproteinase 14 and transforming growth factor beta-1 (TGFbeta-1).", Added definition dbxref PMID:11970960 to GO:0071100, Added synonym "ITGAV-ITGB8-MMP14-TGFB1 complex" to GO:0071100, Added general dbxref CORUM:2342 to synonym ITGAV-ITGB8-MMP14-TGFB1 complex of GO:0071100, Changed synonym scope of GO:0071100 from "Related" to "Narrow", Created link GO:0071100 -OBO_REL:is_a-> GO:0043234, Created link GO:0071100 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071100] * Changed name of GO:0071100 from "null" to "alphaV-beta8 integrin-MMP14-TGFbeta-1 complex" * Set definition of GO:0071100 to "A protein complex that consists of an alphaV-beta8 integrin complex bound to matrix metalloproteinase 14 and transforming growth factor beta-1 (TGFbeta-1)." * Added definition dbxref PMID:11970960 to GO:0071100 * Added synonym "ITGAV-ITGB8-MMP14-TGFB1 complex" to GO:0071100 * Added general dbxref CORUM:2342 to synonym ITGAV-ITGB8-MMP14-TGFB1 complex of GO:0071100 * Changed synonym scope of GO:0071100 from "Related" to "Narrow" * Created link GO:0071100 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071100 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071100 * [Changed name of GO:0071101 from "null" to "alpha4-beta1 integrin-JAM2 complex", Set definition of GO:0071101 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to the cell adhesion molecule JAM2.", Added definition dbxref PMID:12070135 to GO:0071101, Added synonym "ITGA4-ITGB1-JAM2 complex" to GO:0071101, Added general dbxref CORUM:2422 to synonym ITGA4-ITGB1-JAM2 complex of GO:0071101, Changed synonym scope of GO:0071101 from "Related" to "Narrow", Created link GO:0071101 -OBO_REL:is_a-> GO:0044459, Created link GO:0071101 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071101] * Changed name of GO:0071101 from "null" to "alpha4-beta1 integrin-JAM2 complex" * Set definition of GO:0071101 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to the cell adhesion molecule JAM2." * Added definition dbxref PMID:12070135 to GO:0071101 * Added synonym "ITGA4-ITGB1-JAM2 complex" to GO:0071101 * Added general dbxref CORUM:2422 to synonym ITGA4-ITGB1-JAM2 complex of GO:0071101 * Changed synonym scope of GO:0071101 from "Related" to "Narrow" * Created link GO:0071101 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071101 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071101 * [Changed name of GO:0071102 from "null" to "alpha4-beta1 integrin-paxillin complex", Set definition of GO:0071102 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to paxillin.", Added definition dbxref PMID:12221126 to GO:0071102, Added synonym "ITGA4-ITGB1-PXN complex" to GO:0071102, Added general dbxref CORUM:2425 to synonym ITGA4-ITGB1-PXN complex of GO:0071102, Changed synonym scope of GO:0071102 from "Related" to "Narrow", Created link GO:0071102 -OBO_REL:is_a-> GO:0044459, Created link GO:0071102 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071102] * Changed name of GO:0071102 from "null" to "alpha4-beta1 integrin-paxillin complex" * Set definition of GO:0071102 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to paxillin." * Added definition dbxref PMID:12221126 to GO:0071102 * Added synonym "ITGA4-ITGB1-PXN complex" to GO:0071102 * Added general dbxref CORUM:2425 to synonym ITGA4-ITGB1-PXN complex of GO:0071102 * Changed synonym scope of GO:0071102 from "Related" to "Narrow" * Created link GO:0071102 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071102 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071102 * Deleted synonym "2,3-oxidosqualene cyclase activity" from GO:0000250 * Changed synonym scope of GO:0000250 from "Exact" to "Broad" * Changed synonym scope of GO:0000250 from "Exact" to "Broad" * Changed definition of GO:0000817 from "A multiprotein complex in yeast consisting of Ctf19p, Okp1p, Mcm1p, Ame1p. This complex bridges the subunits that are in contact with centromeric DNA and the subunits bound to microtubules during kinetochore assembly." to "A multiprotein complex in yeast consisting of Ctf19p, Okp1p, Mcm21p, and Ame1p. This complex bridges the subunits that are in contact with centromeric DNA and the subunits bound to microtubules during kinetochore assembly." * Added synonym "eIF2" to GO:0005850 * Added general dbxref GOC:mah to synonym eIF2 of GO:0005850 * Changed synonym scope of GO:0005850 from "Related" to "Exact" * Added general dbxref GOC:mah to synonym transmembrane of GO:0016021 * Changed synonym scope of GO:0016021 from "Exact" to "Related" * Added comment "Note that the phrase 'oxidosqualene cyclase' has been used to refer to enzymes that catalyze the reaction represented by 'lanosterol synthase activity ; GO:0000250'." * Changed definition of GO:0031559 from "Catalysis of the cyclization of (S)-2,3-epoxysqualene to triterpene." to "Catalysis of the cyclization of (S)-2,3-epoxysqualene to form a triterpene." * Added synonym "2,3-oxidosqualene cyclase activity" to GO:0031559 * Added general dbxref GOC:mah to synonym 2,3-oxidosqualene cyclase activity of GO:0031559 * Changed synonym scope of GO:0031559 from "Related" to "Exact" * Changed name of GO:0033401 from "TTT codon-amino acid adaptor activity" to "UUU codon-amino acid adaptor activity" * Changed definition of GO:0033401 from "A triplet codon-amino acid adaptor activity that recognizes a TTT codon." to "A triplet codon-amino acid adaptor activity that recognizes a UUU codon." * Added synonym "phenylalanine tRNA" to GO:0033401 * Added general dbxref GOC:mah to synonym phenylalanine tRNA of GO:0033401 * Added general dbxref GOC:hjd to synonym phenylalanine tRNA of GO:0033401 * Added synonym "TTT codon-amino acid adaptor activity" to GO:0033401 * Added general dbxref GOC:hjd to synonym TTT codon-amino acid adaptor activity of GO:0033401 * Changed synonym scope of GO:0033401 from "Related" to "Exact" * Changed name of GO:0033402 from "TTC codon-amino acid adaptor activity" to "UUC codon-amino acid adaptor activity" * Changed definition of GO:0033402 from "A triplet codon-amino acid adaptor activity that recognizes a TTC codon." to "A triplet codon-amino acid adaptor activity that recognizes a UUC codon." * Added synonym "phenylalanine tRNA" to GO:0033402 * Added general dbxref GOC:mah to synonym phenylalanine tRNA of GO:0033402 * Added general dbxref GOC:hjd to synonym phenylalanine tRNA of GO:0033402 * Added synonym "TTC codon-amino acid adaptor activity" to GO:0033402 * Added general dbxref GOC:hjd to synonym TTC codon-amino acid adaptor activity of GO:0033402 * Changed synonym scope of GO:0033402 from "Related" to "Exact" * Changed name of GO:0033403 from "TTA codon-amino acid adaptor activity" to "UUA codon-amino acid adaptor activity" * Changed definition of GO:0033403 from "A triplet codon-amino acid adaptor activity that recognizes a TTA codon." to "A triplet codon-amino acid adaptor activity that recognizes a UUA codon." * Added synonym "leucine tRNA" to GO:0033403 * Added general dbxref GOC:mah to synonym leucine tRNA of GO:0033403 * Added general dbxref GOC:hjd to synonym leucine tRNA of GO:0033403 * Added synonym "TTA codon-amino acid adaptor activity" to GO:0033403 * Added general dbxref GOC:hjd to synonym TTA codon-amino acid adaptor activity of GO:0033403 * Changed synonym scope of GO:0033403 from "Related" to "Exact" * Changed name of GO:0033404 from "TTG codon-amino acid adaptor activity" to "UUG codon-amino acid adaptor activity" * Changed definition of GO:0033404 from "A triplet codon-amino acid adaptor activity that recognizes a TTG codon." to "A triplet codon-amino acid adaptor activity that recognizes a UUG codon." * Added synonym "leucine tRNA" to GO:0033404 * Added general dbxref GOC:mah to synonym leucine tRNA of GO:0033404 * Added general dbxref GOC:hjd to synonym leucine tRNA of GO:0033404 * Added synonym "TTG codon-amino acid adaptor activity" to GO:0033404 * Added general dbxref GOC:hjd to synonym TTG codon-amino acid adaptor activity of GO:0033404 * Changed synonym scope of GO:0033404 from "Related" to "Exact" * Changed name of GO:0033405 from "TCT codon-amino acid adaptor activity" to "UCU codon-amino acid adaptor activity" * Changed definition of GO:0033405 from "A triplet codon-amino acid adaptor activity that recognizes a TCT codon." to "A triplet codon-amino acid adaptor activity that recognizes a UCU codon." * Added synonym "serine tRNA" to GO:0033405 * Added general dbxref GOC:mah to synonym serine tRNA of GO:0033405 * Added general dbxref GOC:hjd to synonym serine tRNA of GO:0033405 * Added synonym "TCT codon-amino acid adaptor activity" to GO:0033405 * Added general dbxref GOC:hjd to synonym TCT codon-amino acid adaptor activity of GO:0033405 * Changed synonym scope of GO:0033405 from "Related" to "Exact" * Changed name of GO:0033406 from "TCC codon-amino acid adaptor activity" to "UCC codon-amino acid adaptor activity" * Changed definition of GO:0033406 from "A triplet codon-amino acid adaptor activity that recognizes a TCC codon." to "A triplet codon-amino acid adaptor activity that recognizes a UCC codon." * Added synonym "serine tRNA" to GO:0033406 * Added general dbxref GOC:mah to synonym serine tRNA of GO:0033406 * Added general dbxref GOC:hjd to synonym serine tRNA of GO:0033406 * Added synonym "TCC codon-amino acid adaptor activity" to GO:0033406 * Added general dbxref GOC:hjd to synonym TCC codon-amino acid adaptor activity of GO:0033406 * Changed synonym scope of GO:0033406 from "Related" to "Exact" * Changed name of GO:0033407 from "TCA codon-amino acid adaptor activity" to "UCA codon-amino acid adaptor activity" * Changed definition of GO:0033407 from "A triplet codon-amino acid adaptor activity that recognizes a TCA codon." to "A triplet codon-amino acid adaptor activity that recognizes a UCA codon." * Added synonym "serine tRNA" to GO:0033407 * Added general dbxref GOC:mah to synonym serine tRNA of GO:0033407 * Added general dbxref GOC:hjd to synonym serine tRNA of GO:0033407 * Added synonym "TCA codon-amino acid adaptor activity" to GO:0033407 * Added general dbxref GOC:hjd to synonym TCA codon-amino acid adaptor activity of GO:0033407 * Changed synonym scope of GO:0033407 from "Related" to "Exact" * Changed name of GO:0033408 from "TCG codon-amino acid adaptor activity" to "UCG codon-amino acid adaptor activity" * Changed definition of GO:0033408 from "A triplet codon-amino acid adaptor activity that recognizes a TCG codon." to "A triplet codon-amino acid adaptor activity that recognizes a UCG codon." * Added synonym "serine tRNA" to GO:0033408 * Added general dbxref GOC:mah to synonym serine tRNA of GO:0033408 * Added general dbxref GOC:hjd to synonym serine tRNA of GO:0033408 * Added synonym "TCG codon-amino acid adaptor activity" to GO:0033408 * Added general dbxref GOC:hjd to synonym TCG codon-amino acid adaptor activity of GO:0033408 * Changed synonym scope of GO:0033408 from "Related" to "Exact" * Changed name of GO:0033409 from "TAT codon-amino acid adaptor activity" to "UAU codon-amino acid adaptor activity" * Changed definition of GO:0033409 from "A triplet codon-amino acid adaptor activity that recognizes a TAT codon." to "A triplet codon-amino acid adaptor activity that recognizes a UAU codon." * Added synonym "TAT codon-amino acid adaptor activity" to GO:0033409 * Added general dbxref GOC:hjd to synonym TAT codon-amino acid adaptor activity of GO:0033409 * Changed synonym scope of GO:0033409 from "Related" to "Exact" * Added synonym "tyrosine tRNA" to GO:0033409 * Added general dbxref GOC:mah to synonym tyrosine tRNA of GO:0033409 * Added general dbxref GOC:hjd to synonym tyrosine tRNA of GO:0033409 * Changed name of GO:0033410 from "TAC codon-amino acid adaptor activity" to "UAC codon-amino acid adaptor activity" * Changed definition of GO:0033410 from "A triplet codon-amino acid adaptor activity that recognizes a TAC codon." to "A triplet codon-amino acid adaptor activity that recognizes a UAC codon." * Added synonym "TAC codon-amino acid adaptor activity" to GO:0033410 * Added general dbxref GOC:hjd to synonym TAC codon-amino acid adaptor activity of GO:0033410 * Changed synonym scope of GO:0033410 from "Related" to "Exact" * Added synonym "tyrosine tRNA" to GO:0033410 * Added general dbxref GOC:mah to synonym tyrosine tRNA of GO:0033410 * Added general dbxref GOC:hjd to synonym tyrosine tRNA of GO:0033410 * Changed name of GO:0033411 from "TAA codon-amino acid adaptor activity" to "UAA codon-amino acid adaptor activity" * Changed definition of GO:0033411 from "A triplet codon-amino acid adaptor activity that recognizes a TAA codon." to "A triplet codon-amino acid adaptor activity that recognizes a UAA codon." * Added synonym "TAA codon-amino acid adaptor activity" to GO:0033411 * Added general dbxref GOC:hjd to synonym TAA codon-amino acid adaptor activity of GO:0033411 * Changed synonym scope of GO:0033411 from "Related" to "Exact" * Changed name of GO:0033412 from "TAG codon-amino acid adaptor activity" to "UAG codon-amino acid adaptor activity" * Changed definition of GO:0033412 from "A triplet codon-amino acid adaptor activity that recognizes a TAG codon." to "A triplet codon-amino acid adaptor activity that recognizes a UAG codon." * Added synonym "TAG codon-amino acid adaptor activity" to GO:0033412 * Added general dbxref GOC:hjd to synonym TAG codon-amino acid adaptor activity of GO:0033412 * Changed synonym scope of GO:0033412 from "Related" to "Exact" * Changed name of GO:0033413 from "TGT codon-amino acid adaptor activity" to "UGU codon-amino acid adaptor activity" * Changed definition of GO:0033413 from "A triplet codon-amino acid adaptor activity that recognizes a TGT codon." to "A triplet codon-amino acid adaptor activity that recognizes a UGU codon." * Added synonym "cysteine tRNA" to GO:0033413 * Added general dbxref GOC:mah to synonym cysteine tRNA of GO:0033413 * Added general dbxref GOC:hjd to synonym cysteine tRNA of GO:0033413 * Added synonym "TGT codon-amino acid adaptor activity" to GO:0033413 * Added general dbxref GOC:hjd to synonym TGT codon-amino acid adaptor activity of GO:0033413 * Changed synonym scope of GO:0033413 from "Related" to "Exact" * Changed name of GO:0033414 from "TGC codon-amino acid adaptor activity" to "UGC codon-amino acid adaptor activity" * Changed definition of GO:0033414 from "A triplet codon-amino acid adaptor activity that recognizes a TGC codon." to "A triplet codon-amino acid adaptor activity that recognizes a UGC codon." * Added synonym "cysteine tRNA" to GO:0033414 * Added general dbxref GOC:mah to synonym cysteine tRNA of GO:0033414 * Added general dbxref GOC:hjd to synonym cysteine tRNA of GO:0033414 * Added synonym "TGC codon-amino acid adaptor activity" to GO:0033414 * Added general dbxref GOC:hjd to synonym TGC codon-amino acid adaptor activity of GO:0033414 * Changed synonym scope of GO:0033414 from "Related" to "Exact" * Changed name of GO:0033415 from "TGA codon-amino acid adaptor activity" to "UGA codon-amino acid adaptor activity" * Changed definition of GO:0033415 from "A triplet codon-amino acid adaptor activity that recognizes a TGA codon." to "A triplet codon-amino acid adaptor activity that recognizes a UGA codon." * Added synonym "TGA codon-amino acid adaptor activity" to GO:0033415 * Added general dbxref GOC:hjd to synonym TGA codon-amino acid adaptor activity of GO:0033415 * Changed synonym scope of GO:0033415 from "Related" to "Exact" * Changed name of GO:0033416 from "TGG codon-amino acid adaptor activity" to "UGG codon-amino acid adaptor activity" * Changed definition of GO:0033416 from "A triplet codon-amino acid adaptor activity that recognizes a TGG codon." to "A triplet codon-amino acid adaptor activity that recognizes a UGG codon." * Added synonym "TGG codon-amino acid adaptor activity" to GO:0033416 * Added general dbxref GOC:hjd to synonym TGG codon-amino acid adaptor activity of GO:0033416 * Changed synonym scope of GO:0033416 from "Related" to "Exact" * Added synonym "tryptophan tRNA" to GO:0033416 * Added general dbxref GOC:mah to synonym tryptophan tRNA of GO:0033416 * Added general dbxref GOC:hjd to synonym tryptophan tRNA of GO:0033416 * Changed name of GO:0033417 from "CTT codon-amino acid adaptor activity" to "CUU codon-amino acid adaptor activity" * Changed definition of GO:0033417 from "A triplet codon-amino acid adaptor activity that recognizes a CTT codon." to "A triplet codon-amino acid adaptor activity that recognizes a CUU codon." * Added synonym "CTT codon-amino acid adaptor activity" to GO:0033417 * Added general dbxref GOC:mah to synonym CTT codon-amino acid adaptor activity of GO:0033417 * Changed synonym scope of GO:0033417 from "Related" to "Exact" * Added synonym "leucine tRNA" to GO:0033417 * Added general dbxref GOC:mah to synonym leucine tRNA of GO:0033417 * Added general dbxref GOC:hjd to synonym leucine tRNA of GO:0033417 * Changed name of GO:0033418 from "CTC codon-amino acid adaptor activity" to "CUC codon-amino acid adaptor activity" * Changed definition of GO:0033418 from "A triplet codon-amino acid adaptor activity that recognizes a CTC codon." to "A triplet codon-amino acid adaptor activity that recognizes a CUC codon." * Added synonym "CTC codon-amino acid adaptor activity" to GO:0033418 * Added general dbxref GOC:hjd to synonym CTC codon-amino acid adaptor activity of GO:0033418 * Changed synonym scope of GO:0033418 from "Related" to "Exact" * Added synonym "leucine tRNA" to GO:0033418 * Added general dbxref GOC:mah to synonym leucine tRNA of GO:0033418 * Added general dbxref GOC:hjd to synonym leucine tRNA of GO:0033418 * Changed name of GO:0033419 from "CTA codon-amino acid adaptor activity" to "CUA codon-amino acid adaptor activity" * Changed definition of GO:0033419 from "A triplet codon-amino acid adaptor activity that recognizes a CTA codon." to "A triplet codon-amino acid adaptor activity that recognizes a CUA codon." * Added synonym "CTA codon-amino acid adaptor activity" to GO:0033419 * Added general dbxref GOC:mah to synonym CTA codon-amino acid adaptor activity of GO:0033419 * Changed synonym scope of GO:0033419 from "Related" to "Exact" * Added synonym "leucine tRNA" to GO:0033419 * Added general dbxref GOC:mah to synonym leucine tRNA of GO:0033419 * Added general dbxref GOC:hjd to synonym leucine tRNA of GO:0033419 * Changed name of GO:0033420 from "CTG codon-amino acid adaptor activity" to "CUG codon-amino acid adaptor activity" * Changed definition of GO:0033420 from "A triplet codon-amino acid adaptor activity that recognizes a CTG codon." to "A triplet codon-amino acid adaptor activity that recognizes a CUG codon." * Added synonym "CTG codon-amino acid adaptor activity" to GO:0033420 * Added general dbxref GOC:hjd to synonym CTG codon-amino acid adaptor activity of GO:0033420 * Changed synonym scope of GO:0033420 from "Related" to "Exact" * Added synonym "leucine tRNA" to GO:0033420 * Added general dbxref GOC:mah to synonym leucine tRNA of GO:0033420 * Added general dbxref GOC:hjd to synonym leucine tRNA of GO:0033420 * Changed name of GO:0033421 from "CCT codon-amino acid adaptor activity" to "CCU codon-amino acid adaptor activity" * Changed definition of GO:0033421 from "A triplet codon-amino acid adaptor activity that recognizes a CCT codon." to "A triplet codon-amino acid adaptor activity that recognizes a CCU codon." * Added synonym "CCT codon-amino acid adaptor activity" to GO:0033421 * Added general dbxref GOC:hjd to synonym CCT codon-amino acid adaptor activity of GO:0033421 * Changed synonym scope of GO:0033421 from "Related" to "Exact" * Added synonym "proline tRNA" to GO:0033421 * Added general dbxref GOC:mah to synonym proline tRNA of GO:0033421 * Added general dbxref GOC:hjd to synonym proline tRNA of GO:0033421 * Added synonym "proline tRNA" to GO:0033422 * Added general dbxref GOC:mah to synonym proline tRNA of GO:0033422 * Added general dbxref GOC:hjd to synonym proline tRNA of GO:0033422 * Added synonym "proline tRNA" to GO:0033423 * Added general dbxref GOC:mah to synonym proline tRNA of GO:0033423 * Added general dbxref GOC:hjd to synonym proline tRNA of GO:0033423 * Added synonym "proline tRNA" to GO:0033424 * Added general dbxref GOC:mah to synonym proline tRNA of GO:0033424 * Added general dbxref GOC:hjd to synonym proline tRNA of GO:0033424 * Changed name of GO:0033425 from "CAT codon-amino acid adaptor activity" to "CAU codon-amino acid adaptor activity" * Changed definition of GO:0033425 from "A triplet codon-amino acid adaptor activity that recognizes a CAT codon." to "A triplet codon-amino acid adaptor activity that recognizes a CAU codon." * Added synonym "CAT codon-amino acid adaptor activity" to GO:0033425 * Added general dbxref GOC:hjd to synonym CAT codon-amino acid adaptor activity of GO:0033425 * Changed synonym scope of GO:0033425 from "Related" to "Exact" * Added synonym "histidine tRNA" to GO:0033425 * Added general dbxref GOC:mah to synonym histidine tRNA of GO:0033425 * Added general dbxref GOC:hjd to synonym histidine tRNA of GO:0033425 * Added synonym "histidine tRNA" to GO:0033426 * Added general dbxref GOC:mah to synonym histidine tRNA of GO:0033426 * Added general dbxref GOC:hjd to synonym histidine tRNA of GO:0033426 * Added synonym "glutamine tRNA" to GO:0033427 * Added general dbxref GOC:mah to synonym glutamine tRNA of GO:0033427 * Added general dbxref GOC:hjd to synonym glutamine tRNA of GO:0033427 * Added synonym "glutamine tRNA" to GO:0033428 * Added general dbxref GOC:mah to synonym glutamine tRNA of GO:0033428 * Added general dbxref GOC:hjd to synonym glutamine tRNA of GO:0033428 * Changed name of GO:0033429 from "CGT codon-amino acid adaptor activity" to "CGU codon-amino acid adaptor activity" * Changed definition of GO:0033429 from "A triplet codon-amino acid adaptor activity that recognizes a CGT codon." to "A triplet codon-amino acid adaptor activity that recognizes a CGU codon." * Added synonym "arginine tRNA" to GO:0033429 * Added general dbxref GOC:mah to synonym arginine tRNA of GO:0033429 * Added general dbxref GOC:hjd to synonym arginine tRNA of GO:0033429 * Added synonym "CGT codon-amino acid adaptor activity" to GO:0033429 * Added general dbxref GOC:hjd to synonym CGT codon-amino acid adaptor activity of GO:0033429 * Changed synonym scope of GO:0033429 from "Related" to "Exact" * Added synonym "arginine tRNA" to GO:0033430 * Added general dbxref GOC:mah to synonym arginine tRNA of GO:0033430 * Added general dbxref GOC:hjd to synonym arginine tRNA of GO:0033430 * Added synonym "arginine tRNA" to GO:0033431 * Added general dbxref GOC:mah to synonym arginine tRNA of GO:0033431 * Added general dbxref GOC:hjd to synonym arginine tRNA of GO:0033431 * Added synonym "arginine tRNA" to GO:0033432 * Added general dbxref GOC:mah to synonym arginine tRNA of GO:0033432 * Added general dbxref GOC:hjd to synonym arginine tRNA of GO:0033432 * Changed name of GO:0033433 from "ATT codon-amino acid adaptor activity" to "AUU codon-amino acid adaptor activity" * Changed definition of GO:0033433 from "A triplet codon-amino acid adaptor activity that recognizes an ATT codon." to "A triplet codon-amino acid adaptor activity that recognizes an AUU codon." * Added synonym "ATT codon-amino acid adaptor activity" to GO:0033433 * Added general dbxref GOC:hjd to synonym ATT codon-amino acid adaptor activity of GO:0033433 * Changed synonym scope of GO:0033433 from "Related" to "Exact" * Added synonym "isoleucine tRNA" to GO:0033433 * Added general dbxref GOC:mah to synonym isoleucine tRNA of GO:0033433 * Added general dbxref GOC:hjd to synonym isoleucine tRNA of GO:0033433 * Changed name of GO:0033434 from "ATC codon-amino acid adaptor activity" to "AUC codon-amino acid adaptor activity" * Changed definition of GO:0033434 from "A triplet codon-amino acid adaptor activity that recognizes an ATC codon." to "A triplet codon-amino acid adaptor activity that recognizes an AUC codon." * Added synonym "ATC codon-amino acid adaptor activity" to GO:0033434 * Added general dbxref GOC:hjd to synonym ATC codon-amino acid adaptor activity of GO:0033434 * Changed synonym scope of GO:0033434 from "Related" to "Exact" * Added synonym "isoleucine tRNA" to GO:0033434 * Added general dbxref GOC:mah to synonym isoleucine tRNA of GO:0033434 * Added general dbxref GOC:hjd to synonym isoleucine tRNA of GO:0033434 * Changed name of GO:0033435 from "ATA codon-amino acid adaptor activity" to "AUA codon-amino acid adaptor activity" * Changed definition of GO:0033435 from "A triplet codon-amino acid adaptor activity that recognizes an ATA codon." to "A triplet codon-amino acid adaptor activity that recognizes an AUA codon." * Added synonym "ATA codon-amino acid adaptor activity" to GO:0033435 * Added general dbxref GOC:hjd to synonym ATA codon-amino acid adaptor activity of GO:0033435 * Changed synonym scope of GO:0033435 from "Related" to "Exact" * Added synonym "isoleucine tRNA" to GO:0033435 * Added general dbxref GOC:mah to synonym isoleucine tRNA of GO:0033435 * Added general dbxref GOC:hjd to synonym isoleucine tRNA of GO:0033435 * Changed name of GO:0033436 from "ATG codon-amino acid adaptor activity" to "AUG codon-amino acid adaptor activity" * Changed definition of GO:0033436 from "A triplet codon-amino acid adaptor activity that recognizes an ATG codon." to "A triplet codon-amino acid adaptor activity that recognizes an AUG codon." * Added synonym "ATG codon-amino acid adaptor activity" to GO:0033436 * Added general dbxref GOC:mah to synonym ATG codon-amino acid adaptor activity of GO:0033436 * Changed synonym scope of GO:0033436 from "Related" to "Exact" * Added synonym "initiator methionine tRNA" to GO:0033436 * Added general dbxref GOC:mah to synonym initiator methionine tRNA of GO:0033436 * Added general dbxref GOC:hjd to synonym initiator methionine tRNA of GO:0033436 * Added synonym "methionine tRNA" to GO:0033436 * Added general dbxref GOC:mah to synonym methionine tRNA of GO:0033436 * Added general dbxref GOC:hjd to synonym methionine tRNA of GO:0033436 * Changed name of GO:0033437 from "ACT codon-amino acid adaptor activity" to "ACU codon-amino acid adaptor activity" * Changed definition of GO:0033437 from "A triplet codon-amino acid adaptor activity that recognizes an ACT codon." to "A triplet codon-amino acid adaptor activity that recognizes an ACU codon." * Added synonym "ACT codon-amino acid adaptor activity" to GO:0033437 * Added general dbxref GOC:mah to synonym ACT codon-amino acid adaptor activity of GO:0033437 * Changed synonym scope of GO:0033437 from "Related" to "Exact" * Added synonym "threonine tRNA" to GO:0033437 * Added general dbxref GOC:mah to synonym threonine tRNA of GO:0033437 * Added general dbxref GOC:hjd to synonym threonine tRNA of GO:0033437 * Added synonym "threonine tRNA" to GO:0033438 * Added general dbxref GOC:mah to synonym threonine tRNA of GO:0033438 * Added general dbxref GOC:hjd to synonym threonine tRNA of GO:0033438 * Added synonym "threonine tRNA" to GO:0033439 * Added general dbxref GOC:mah to synonym threonine tRNA of GO:0033439 * Added general dbxref GOC:hjd to synonym threonine tRNA of GO:0033439 * Added synonym "threonine tRNA" to GO:0033440 * Added general dbxref GOC:mah to synonym threonine tRNA of GO:0033440 * Added general dbxref GOC:hjd to synonym threonine tRNA of GO:0033440 * Changed name of GO:0033441 from "AAT codon-amino acid adaptor activity" to "AAU codon-amino acid adaptor activity" * Changed definition of GO:0033441 from "A triplet codon-amino acid adaptor activity that recognizes an AAT codon." to "A triplet codon-amino acid adaptor activity that recognizes an AAU codon." * Added synonym "AAT codon-amino acid adaptor activity" to GO:0033441 * Added general dbxref GOC:hjd to synonym AAT codon-amino acid adaptor activity of GO:0033441 * Changed synonym scope of GO:0033441 from "Related" to "Exact" * Added synonym "asparagine tRNA" to GO:0033441 * Added general dbxref GOC:mah to synonym asparagine tRNA of GO:0033441 * Added general dbxref GOC:hjd to synonym asparagine tRNA of GO:0033441 * Added synonym "asparagine tRNA" to GO:0033442 * Added general dbxref GOC:mah to synonym asparagine tRNA of GO:0033442 * Added general dbxref GOC:hjd to synonym asparagine tRNA of GO:0033442 * Added synonym "lysine tRNA" to GO:0033443 * Added general dbxref GOC:mah to synonym lysine tRNA of GO:0033443 * Added general dbxref GOC:hjd to synonym lysine tRNA of GO:0033443 * Added synonym "lysine tRNA" to GO:0033444 * Added general dbxref GOC:mah to synonym lysine tRNA of GO:0033444 * Added general dbxref GOC:hjd to synonym lysine tRNA of GO:0033444 * Changed name of GO:0033445 from "AGT codon-amino acid adaptor activity" to "AGU codon-amino acid adaptor activity" * Changed definition of GO:0033445 from "A triplet codon-amino acid adaptor activity that recognizes an AGT codon." to "A triplet codon-amino acid adaptor activity that recognizes an AGU codon." * Added synonym "AGT codon-amino acid adaptor activity" to GO:0033445 * Added general dbxref GOC:mah to synonym AGT codon-amino acid adaptor activity of GO:0033445 * Changed synonym scope of GO:0033445 from "Related" to "Exact" * Added synonym "serine tRNA" to GO:0033445 * Added general dbxref GOC:mah to synonym serine tRNA of GO:0033445 * Added general dbxref GOC:hjd to synonym serine tRNA of GO:0033445 * Added synonym "serine tRNA" to GO:0033446 * Added general dbxref GOC:mah to synonym serine tRNA of GO:0033446 * Added general dbxref GOC:hjd to synonym serine tRNA of GO:0033446 * Added synonym "arginine tRNA" to GO:0033447 * Added general dbxref GOC:mah to synonym arginine tRNA of GO:0033447 * Added general dbxref GOC:hjd to synonym arginine tRNA of GO:0033447 * Added synonym "arginine tRNA" to GO:0033448 * Added general dbxref GOC:mah to synonym arginine tRNA of GO:0033448 * Added general dbxref GOC:hjd to synonym arginine tRNA of GO:0033448 * Changed name of GO:0033449 from "GTT codon-amino acid adaptor activity" to "GUU codon-amino acid adaptor activity" * Changed definition of GO:0033449 from "A triplet codon-amino acid adaptor activity that recognizes a GTT codon." to "A triplet codon-amino acid adaptor activity that recognizes a GUU codon." * Added synonym "GTT codon-amino acid adaptor activity" to GO:0033449 * Added general dbxref GOC:hjd to synonym GTT codon-amino acid adaptor activity of GO:0033449 * Changed synonym scope of GO:0033449 from "Related" to "Exact" * Added synonym "valine tRNA" to GO:0033449 * Added general dbxref GOC:mah to synonym valine tRNA of GO:0033449 * Added general dbxref GOC:hjd to synonym valine tRNA of GO:0033449 * Changed name of GO:0033450 from "GTC codon-amino acid adaptor activity" to "GUC codon-amino acid adaptor activity" * Changed definition of GO:0033450 from "A triplet codon-amino acid adaptor activity that recognizes a GTC codon." to "A triplet codon-amino acid adaptor activity that recognizes a GUC codon." * Added synonym "GTC codon-amino acid adaptor activity" to GO:0033450 * Added general dbxref GOC:hjd to synonym GTC codon-amino acid adaptor activity of GO:0033450 * Changed synonym scope of GO:0033450 from "Related" to "Exact" * Added synonym "valine tRNA" to GO:0033450 * Added general dbxref GOC:mah to synonym valine tRNA of GO:0033450 * Added general dbxref GOC:hjd to synonym valine tRNA of GO:0033450 * Changed name of GO:0033451 from "GTA codon-amino acid adaptor activity" to "GUA codon-amino acid adaptor activity" * Changed definition of GO:0033451 from "A triplet codon-amino acid adaptor activity that recognizes a GTA codon." to "A triplet codon-amino acid adaptor activity that recognizes a GUA codon." * Added synonym "GTA codon-amino acid adaptor activity" to GO:0033451 * Added general dbxref GOC:hjd to synonym GTA codon-amino acid adaptor activity of GO:0033451 * Changed synonym scope of GO:0033451 from "Related" to "Exact" * Added synonym "valine tRNA" to GO:0033451 * Added general dbxref GOC:mah to synonym valine tRNA of GO:0033451 * Added general dbxref GOC:hjd to synonym valine tRNA of GO:0033451 * Changed name of GO:0033452 from "GTG codon-amino acid adaptor activity" to "GUG codon-amino acid adaptor activity" * Changed definition of GO:0033452 from "A triplet codon-amino acid adaptor activity that recognizes a GTG codon." to "A triplet codon-amino acid adaptor activity that recognizes a GUG codon." * Added synonym "GTG codon-amino acid adaptor activity" to GO:0033452 * Added general dbxref GOC:hjd to synonym GTG codon-amino acid adaptor activity of GO:0033452 * Changed synonym scope of GO:0033452 from "Related" to "Exact" * Added synonym "valine tRNA" to GO:0033452 * Added general dbxref GOC:mah to synonym valine tRNA of GO:0033452 * Added general dbxref GOC:hjd to synonym valine tRNA of GO:0033452 * Changed name of GO:0033453 from "GCT codon-amino acid adaptor activity" to "GCU codon-amino acid adaptor activity" * Changed definition of GO:0033453 from "A triplet codon-amino acid adaptor activity that recognizes a GCT codon." to "A triplet codon-amino acid adaptor activity that recognizes a GCU codon." * Added synonym "alanine tRNA" to GO:0033453 * Added general dbxref GOC:mah to synonym alanine tRNA of GO:0033453 * Added general dbxref GOC:hjd to synonym alanine tRNA of GO:0033453 * Added synonym "GCT codon-amino acid adaptor activity" to GO:0033453 * Added general dbxref GOC:hjd to synonym GCT codon-amino acid adaptor activity of GO:0033453 * Changed synonym scope of GO:0033453 from "Related" to "Exact" * Added synonym "alanine tRNA" to GO:0033454 * Added general dbxref GOC:mah to synonym alanine tRNA of GO:0033454 * Added general dbxref GOC:hjd to synonym alanine tRNA of GO:0033454 * Added synonym "alanine tRNA" to GO:0033455 * Added general dbxref GOC:mah to synonym alanine tRNA of GO:0033455 * Added general dbxref GOC:hjd to synonym alanine tRNA of GO:0033455 * Added synonym "alanine tRNA" to GO:0033456 * Added general dbxref GOC:mah to synonym alanine tRNA of GO:0033456 * Added general dbxref GOC:hjd to synonym alanine tRNA of GO:0033456 * Changed name of GO:0033457 from "GAT codon-amino acid adaptor activity" to "GAU codon-amino acid adaptor activity" * Changed comment from "Note that in the standard genetic code, GAT codes for acid." to "Note that in the standard genetic code, GAT codes for aspartic acid." * Changed definition of GO:0033457 from "A triplet codon-amino acid adaptor activity that recognizes a GAT codon." to "A triplet codon-amino acid adaptor activity that recognizes a GAU codon." * Added synonym "aspartic acid tRNA" to GO:0033457 * Added general dbxref GOC:mah to synonym aspartic acid tRNA of GO:0033457 * Added general dbxref GOC:hjd to synonym aspartic acid tRNA of GO:0033457 * Added synonym "GAT codon-amino acid adaptor activity" to GO:0033457 * Added general dbxref GOC:hjd to synonym GAT codon-amino acid adaptor activity of GO:0033457 * Changed synonym scope of GO:0033457 from "Related" to "Exact" * Changed comment from "Note that in the standard genetic code, GAC codes for acid." to "Note that in the standard genetic code, GAC codes for aspartic acid." * Added synonym "aspartic acid tRNA" to GO:0033458 * Added general dbxref GOC:mah to synonym aspartic acid tRNA of GO:0033458 * Added general dbxref GOC:hjd to synonym aspartic acid tRNA of GO:0033458 * Changed comment from "Note that in the standard genetic code, GAA codes for acid." to "Note that in the standard genetic code, GAA codes for glutamic acid." * Added synonym "glutamic acid tRNA" to GO:0033459 * Added general dbxref GOC:mah to synonym glutamic acid tRNA of GO:0033459 * Added general dbxref GOC:hjd to synonym glutamic acid tRNA of GO:0033459 * Changed comment from "Note that in the standard genetic code, GAG codes for acid." to "Note that in the standard genetic code, GAG codes for glutamic acid." * Added synonym "glutamic acid tRNA" to GO:0033460 * Added general dbxref GOC:mah to synonym glutamic acid tRNA of GO:0033460 * Added general dbxref GOC:hjd to synonym glutamic acid tRNA of GO:0033460 * Changed name of GO:0033461 from "GGT codon-amino acid adaptor activity" to "GGU codon-amino acid adaptor activity" * Changed definition of GO:0033461 from "A triplet codon-amino acid adaptor activity that recognizes a GGT codon." to "A triplet codon-amino acid adaptor activity that recognizes a GGU codon." * Added synonym "GGT codon-amino acid adaptor activity" to GO:0033461 * Added general dbxref GOC:hjd to synonym GGT codon-amino acid adaptor activity of GO:0033461 * Changed synonym scope of GO:0033461 from "Related" to "Exact" * Added synonym "glycine tRNA" to GO:0033461 * Added general dbxref GOC:mah to synonym glycine tRNA of GO:0033461 * Added general dbxref GOC:hjd to synonym glycine tRNA of GO:0033461 * Added synonym "glycine tRNA" to GO:0033462 * Added general dbxref GOC:mah to synonym glycine tRNA of GO:0033462 * Added general dbxref GOC:hjd to synonym glycine tRNA of GO:0033462 * Added synonym "glycine tRNA" to GO:0033463 * Added general dbxref GOC:mah to synonym glycine tRNA of GO:0033463 * Added general dbxref GOC:hjd to synonym glycine tRNA of GO:0033463 * Added synonym "glycine tRNA" to GO:0033464 * Added general dbxref GOC:mah to synonym glycine tRNA of GO:0033464 * Added general dbxref GOC:hjd to synonym glycine tRNA of GO:0033464 * Added synonym "adaptive response to oxidative stress" to GO:0034599 * Added general dbxref GOC:add to synonym adaptive response to oxidative stress of GO:0034599 * Added general dbxref GOC:vk to synonym adaptive response to oxidative stress of GO:0034599 * Changed synonym scope of GO:0034599 from "Related" to "Narrow" * Added general dbxref GOC:mah to synonym transmembrane of GO:0044214 * Changed synonym scope of GO:0044214 from "Exact" to "Related" * Changed definition of GO:0046964 from "Catalysis of the transfer of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride synthesized from adenosine 5'-phosphosulfatefrom one side of a membrane to the other." to "Catalysis of the transfer of 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride synthesized from adenosine 5'-phosphosulfate, from one side of a membrane to the other." From gocvs at genome.stanford.edu Mon Nov 9 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 9 Nov 2009 21:30:13 -0800 Subject: [Go-diff] GO update 11/09/2009 Message-ID: <200911100530.nAA5UD8D026160@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.876 by 1.878 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0071103 * Created object of type obo:TERM with id GO:0071104 * Created object of type obo:TERM with id GO:0071105 * [Changed name of GO:0071103 from "null" to "DNA conformation change", Set definition of GO:0071103 to "A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule.", Added definition dbxref GOC:mah to GO:0071103, Added GO:0071103 to category gosubset_prok, Added synonym "DNA conformation modification" to GO:0071103, Added general dbxref GOC:mah to synonym DNA conformation modification of GO:0071103, Changed synonym scope of GO:0071103 from "Related" to "Exact", Created link GO:0071103 -OBO_REL:is_a-> GO:0009987, Assigned namespace "biological_process" to GO:0071103] * Changed name of GO:0071103 from "null" to "DNA conformation change" * Set definition of GO:0071103 to "A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule." * Added definition dbxref GOC:mah to GO:0071103 * Added GO:0071103 to category gosubset_prok * Added synonym "DNA conformation modification" to GO:0071103 * Added general dbxref GOC:mah to synonym DNA conformation modification of GO:0071103 * Changed synonym scope of GO:0071103 from "Related" to "Exact" * Created link GO:0071103 -OBO_REL:is_a-> GO:0009987 * Assigned namespace "biological_process" to GO:0071103 * [Changed name of GO:0071104 from "null" to "response to interleukin-9", Set definition of GO:0071104 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-9 stimulus.", Added definition dbxref GOC:mah to GO:0071104, Added synonym "response to IL-9" to GO:0071104, Added general dbxref GOC:mah to synonym response to IL-9 of GO:0071104, Changed synonym scope of GO:0071104 from "Related" to "Exact", Created link GO:0071104 -OBO_REL:is_a-> GO:0034097, Assigned namespace "biological_process" to GO:0071104] * Changed name of GO:0071104 from "null" to "response to interleukin-9" * Set definition of GO:0071104 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-9 stimulus." * Added definition dbxref GOC:mah to GO:0071104 * Added synonym "response to IL-9" to GO:0071104 * Added general dbxref GOC:mah to synonym response to IL-9 of GO:0071104 * Changed synonym scope of GO:0071104 from "Related" to "Exact" * Created link GO:0071104 -OBO_REL:is_a-> GO:0034097 * Assigned namespace "biological_process" to GO:0071104 * [Changed name of GO:0071105 from "null" to "response to interleukin-11", Set definition of GO:0071105 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-11 stimulus.", Added definition dbxref GOC:mah to GO:0071105, Added synonym "response to IL-11" to GO:0071105, Added general dbxref GOC:mah to synonym response to IL-11 of GO:0071105, Changed synonym scope of GO:0071105 from "Related" to "Exact", Created link GO:0071105 -OBO_REL:is_a-> GO:0034097, Assigned namespace "biological_process" to GO:0071105] * Changed name of GO:0071105 from "null" to "response to interleukin-11" * Set definition of GO:0071105 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-11 stimulus." * Added definition dbxref GOC:mah to GO:0071105 * Added synonym "response to IL-11" to GO:0071105 * Added general dbxref GOC:mah to synonym response to IL-11 of GO:0071105 * Changed synonym scope of GO:0071105 from "Related" to "Exact" * Created link GO:0071105 -OBO_REL:is_a-> GO:0034097 * Assigned namespace "biological_process" to GO:0071105 * Created link GO:0001640 -part_of-> GO:0007196 * Changed comment from "This term was added by GO_REF:0000022." to "Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). This term was added by GO_REF:0000022." * Deleted GO:0003307 --OBO_REL:is_a--> GO:0060828 * Created link GO:0003307 -OBO_REL:is_a-> GO:0030111 * Deleted GO:0003330 --OBO_REL:is_a--> GO:0050794 * Created link GO:0003330 -OBO_REL:is_a-> GO:0060341 * Created link GO:0003330 -OBO_REL:is_a-> GO:0051128 * added secondary id GO:0019109 to GO:0003995 * Added general dbxref EC:1.3.99.- to GO:0003995 * Added general dbxref MetaCyc:LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN to GO:0003995 * Added synonym "acyl-CoA reductase activity" to GO:0003995 * Added general dbxref GOC:mah to synonym acyl-CoA reductase activity of GO:0003995 * Changed synonym scope of GO:0003995 from "Related" to "Exact" * Created link GO:0004875 -part_of-> GO:0002430 * Created link GO:0004896 -part_of-> GO:0019221 * Created link GO:0004930 -part_of-> GO:0007186 * Created link GO:0005031 -part_of-> GO:0033209 * Changed definition of GO:0005584 from "A collagen heterotrimer containing two alpha1(I) chains and one alpha2(I) chain; type I collagen triple helices associate to form banded fibrils." to "A collagen trimer containing alpha(I) chains. The most common form of type I collagen is a heterotrimer containing two alpha1(I) chains and one alpha2(I) chain; homotrimers containing three alpha1(I) chains are also found. Type I collagen triple helices associate to form banded fibrils." * Added definition dbxref GOC:mah to GO:0005584 * Added definition dbxref GOC:sl to GO:0005584 * Deleted synonym "DNA conformation modification" from GO:0006265 * Created link GO:0006265 -OBO_REL:is_a-> GO:0071103 * Deleted GO:0006323 --OBO_REL:is_a--> GO:0009987 * Created link GO:0006323 -OBO_REL:is_a-> GO:0071103 * Changed name of GO:0007193 from "inhibition of adenylate cyclase activity by G-protein signaling" to "inhibition of adenylate cyclase activity by G-protein signaling pathway" * Set definition of GO:0008046 to "Combining with an extracellular messenger that results in a change in cellular activity involved in axon guidance." * Added definition dbxref GOC:dph to GO:0008046 * Added definition dbxref GOC:tb to GO:0008046 * Created link GO:0008046 -part_of-> GO:0007411 * Changed name of GO:0008227 from "amine receptor activity" to "G-protein coupled amine receptor activity" * Changed definition of GO:0008227 from "Combining with a biogenic amine to initiate a change in cell activity." to "A receptor that binds an extracellular amine and transmits the signal to a heterotrimeric G-protein complex. These receptors are characteristically seven-transmembrane receptors and are made up of hetero- or homodimers." * Created link GO:0009884 -part_of-> GO:0009736 * Created link GO:0010322 -OBO_REL:is_a-> GO:0071071 * Created link GO:0010323 -OBO_REL:is_a-> GO:0071072 * Deleted GO:0010511 --OBO_REL:is_a--> GO:0046890 * Created link GO:0010511 -OBO_REL:is_a-> GO:0071071 * Deleted GO:0010512 --OBO_REL:is_a--> GO:0051055 * Created link GO:0010512 -OBO_REL:is_a-> GO:0071072 * Deleted GO:0010513 --OBO_REL:is_a--> GO:0046889 * Created link GO:0010513 -OBO_REL:is_a-> GO:0071073 * Changed name of GO:0010578 from "regulation of adenylate cyclase activity involved in G-protein signaling" to "regulation of adenylate cyclase activity involved in G-protein signaling pathway" * Deleted definition dbxref PMID:17163883 from GO:0010597 * Added definition dbxref PMID:17163881 to GO:0010597 * Created link GO:0010990 -OBO_REL:is_a-> GO:0090092 * Deleted GO:0016907 --part_of--> GO:0007186 * Deleted GO:0018522 --OBO_REL:is_a--> GO:0019109 * Created link GO:0018522 -OBO_REL:is_a-> GO:0003995 * Deleted GO:0018525 --OBO_REL:is_a--> GO:0019109 * Created link GO:0018525 -OBO_REL:is_a-> GO:0003995 * Set definition of GO:0018597 to "Catalysis of the oxidation of alkanes (up to C8) to alcohols and alkenes (up to C5) to epoxides and alcohols in the presence of ammonium ions." * Added definition dbxref PMID:16347810 to GO:0018597 * Destroyed object GO:0019007 * Deleted GO:0018522 --OBO_REL:is_a--> GO:0019109 * Deleted GO:0018525 --OBO_REL:is_a--> GO:0019109 * Destroyed object GO:0019109 * Set definition of GO:0019113 to "Catalysis of a monooxygenase reaction in which oxygen is incorporated into limonene." * Added definition dbxref GOC:mah to GO:0019113 * Set definition of GO:0019114 to "Catalysis of the reaction: catechol + O2 = a muconate." * Added definition dbxref GOC:mah to GO:0019114 * Added definition dbxref MetaCyc:CATECHOL-12-DIOXYGENASE-RXN to GO:0019114 * Added definition dbxref MetaCyc:CATECHOL-23-DIOXYGENASE-RXN to GO:0019114 * Set definition of GO:0019117 to "Catalysis of the reaction: a dihydroxyfluorene + O2 = the corresponding 2-hydroxy-4-(oxo-1,3-dihydro-2H-inden-ylidene) but-2-enoic acid." * Added definition dbxref GOC:mah to GO:0019117 * Added definition dbxref UM-BBD_enzymeID:e0294 to GO:0019117 * Added definition dbxref UM-BBD_enzymeID:e0295 to GO:0019117 * Set definition of GO:0019118 to "Catalysis of the reaction: a phenanthrene dioxide + H2O = a dihydrodiolphenanthrene." * Added definition dbxref GOC:mah to GO:0019118 * Added definition dbxref UM-BBD_enzymeID:e0363 to GO:0019118 * Added definition dbxref UM-BBD_enzymeID:e0364 to GO:0019118 * Set definition of GO:0019119 to "Catalysis of the reaction: phenanthrene-9,10-oxide + H2O = trans-9,10-dihydrodiolphenanthrene." * Added definition dbxref GOC:mah to GO:0019119 * Added definition dbxref UM-BBD_enzymeID:e0335 to GO:0019119 * Added definition dbxref UM-BBD_enzymeID:e0367 to GO:0019119 * Destroyed object GO:0019173 * Set definition of GO:0019181 to "Catalysis of the reaction: a halohydrin = an epoxide + a hydrogen halide." * Added definition dbxref PMID:8017917 to GO:0019181 * Set definition of GO:0019186 to "Catalysis of the transfer of an acyl group from acyl-CoA to a nitrogen atom on an acceptor molecule." * Added definition dbxref GOC:mah to GO:0019186 * Set definition of GO:0019204 to "Catalysis of the reaction: phosphopolynucleotide + H2O = polynucleotide + phosphate." * Added definition dbxref GOC:mah to GO:0019204 * Added synonym "polynucleotide phosphatase activity" to GO:0019204 * Added general dbxref GOC:mah to synonym polynucleotide phosphatase activity of GO:0019204 * Changed synonym scope of GO:0019204 from "Related" to "Exact" * Set definition of GO:0019238 to "Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amidine, a compound of the form R-C(=NH)-NH2, in a reaction that involves the opening of a ring." * Added definition dbxref GOC:mah to GO:0019238 * Set definition of GO:0019371 to "The chemical reactions and pathways by which prostaglandins are formed from arachidonic acid, and in which prostaglandin-endoperoxide synthase (cyclooxygenase) catalyzes the committed step in the conversion of arachidonic acid to the prostaglandin-endoperoxides PGG2 and PGH2." * Added definition dbxref PMID:19854273 to GO:0019371 * Set definition of GO:0019372 to "The chemical reactions and pathways by which an unsaturated fatty acid (such as arachidonic acid or linolenic acid) is converted to other compounds, and in which the first step is hydroperoxide formation catalyzed by lipoxygenase." * Added definition dbxref GOC:mah to GO:0019372 * Added definition dbxref PMID:17163881 to GO:0019372 * Deleted GO:0019372 --OBO_REL:is_a--> GO:0019369 * Deleted GO:0019372 --part_of--> GO:0019370 * Created link GO:0019372 -OBO_REL:is_a-> GO:0006690 * Created link GO:0019372 -OBO_REL:is_a-> GO:0000038 * Set definition of GO:0019373 to "The chemical reactions and pathways by which arachidonic acid is converted to other compounds including epoxyeicosatrienoic acids and dihydroxyeicosatrienoic acids." * Added definition dbxref GOC:mah to GO:0019373 * Added definition dbxref PMID:17979511 to GO:0019373 * Set definition of GO:0019464 to "The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex." * Added definition dbxref MetaCyc:GLYCLEAV-PWY to GO:0019464 * Set definition of GO:0019511 to "The hydroxylation of peptidyl-proline to form peptidyl-hydroxyproline." * Added definition dbxref GOC:mah to GO:0019511 * Created link GO:0032271 -OBO_REL:is_a-> GO:0050794 * Deleted GO:0032392 --OBO_REL:is_a--> GO:0006259 * Created link GO:0032392 -OBO_REL:is_a-> GO:0071103 * Created link GO:0032884 -OBO_REL:is_a-> GO:0031326 * added secondary id GO:0019173 to GO:0043726 * Added synonym "pyrimidine phosphatase activity" to GO:0043726 * Added general dbxref GOC:mah to synonym pyrimidine phosphatase activity of GO:0043726 * Changed synonym scope of GO:0043726 from "Related" to "Exact" * Created link GO:0043726 -OBO_REL:is_a-> GO:0016791 * added secondary id GO:0019007 to GO:0047444 * Added synonym "N-acetylneuraminic acid phosphate synthase activity" to GO:0047444 * Added general dbxref GOC:mah to synonym N-acetylneuraminic acid phosphate synthase activity of GO:0047444 * Changed synonym scope of GO:0047444 from "Related" to "Exact" * Created link GO:0047444 -OBO_REL:is_a-> GO:0003824 * Created link GO:0070857 -OBO_REL:is_a-> GO:0050810 * Created link GO:0070858 -OBO_REL:is_a-> GO:0010894 * Created link GO:0070859 -OBO_REL:is_a-> GO:0010893 * Changed definition of GO:0071097 from "A protein complex that consists of an alphaV-beta3 integrin complex bound to paxillin and the the FAK-related kinase Pyk2." to "A protein complex that consists of an alphaV-beta3 integrin complex bound to paxillin and the FAK-related kinase Pyk2." * Created link GO:0090081 -OBO_REL:is_a-> GO:0060828 * Created link GO:0090082 -OBO_REL:is_a-> GO:0090090 From gocvs at genome.stanford.edu Tue Nov 10 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 10 Nov 2009 21:30:13 -0800 Subject: [Go-diff] GO update 11/10/2009 Message-ID: <200911110530.nAB5UDLp019620@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.878 by 1.880 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Added synonym "SER" to GO:0005790 * Changed synonym scope of GO:0005790 from "Related" to "Exact" * Added synonym "RER" to GO:0005791 * Changed synonym scope of GO:0005791 from "Related" to "Exact" * Changed synonym scope of GO:0005884 from "Broad" to "Exact" * Added synonym "post synaptic density" to GO:0014069 * Changed synonym scope of GO:0014069 from "Related" to "Exact" * Added synonym "post-synaptic density" to GO:0014069 * Changed synonym scope of GO:0014069 from "Related" to "Exact" * Added synonym "RER membrane" to GO:0030867 * Changed synonym scope of GO:0030867 from "Related" to "Exact" * Added synonym "SER membrane" to GO:0030868 * Changed synonym scope of GO:0030868 from "Related" to "Exact" * Added synonym "cell process" to GO:0042995 * Changed synonym scope of GO:0042995 from "Related" to "Broad" * Added synonym "cellular process" to GO:0042995 * Changed synonym scope of GO:0042995 from "Related" to "Broad" * Added synonym "cellular projection" to GO:0042995 * Changed synonym scope of GO:0042995 from "Related" to "Exact" * Changed definition of GO:0043586 from "The process whose specific outcome is the progression of the tongue over time, from its formation to the mature structure. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech." to "The process whose specific outcome is the progression of the tongue over time, from its formation to the mature structure. The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech." * Added synonym "post-synaptic membrane" to GO:0045211 * Changed synonym scope of GO:0045211 from "Related" to "Exact" * Added synonym "RER lumen" to GO:0048237 * Changed synonym scope of GO:0048237 from "Related" to "Exact" * Added synonym "SER lumen" to GO:0048238 * Changed synonym scope of GO:0048238 from "Related" to "Exact" * Added synonym "pre-synaptic active zone" to GO:0048786 * Changed synonym scope of GO:0048786 from "Related" to "Exact" * Added synonym "active zone plasma membrane" to GO:0048787 * Changed synonym scope of GO:0048787 from "Related" to "Exact" * Added synonym "active zone pre-synaptic plasma membrane" to GO:0048787 * Changed synonym scope of GO:0048787 from "Related" to "Exact" * Added synonym "pre-synaptic active zone membrane" to GO:0048787 * Changed synonym scope of GO:0048787 from "Related" to "Exact" * Added synonym "pre-synaptic cytoskeletal matrix assembled at active zones" to GO:0048788 From gocvs at genome.stanford.edu Thu Nov 12 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 12 Nov 2009 21:30:12 -0800 Subject: [Go-diff] GO update 11/12/2009 Message-ID: <200911130530.nAD5UC9s030179@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.880 by 1.881 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0071106 * Created object of type obo:TERM with id GO:0071107 * Created object of type obo:TERM with id GO:0071108 * Created object of type obo:TERM with id GO:0071109 * [Changed name of GO:0071106 from "null" to "adenosine 3',5'-bisphosphate transmembrane transport", Set definition of GO:0071106 to "The directed movement of adenosine 3',5'-bisphosphate across a membrane into, out of, within or between cells.", Added definition dbxref ChEBI:37240 to GO:0071106, Added definition dbxref GOC:mah to GO:0071106, Added definition dbxref PubChem:159296 to GO:0071106, Added synonym "adenosine 3',5'-diphosphate transport" to GO:0071106, Added general dbxref PubChem:159296 to synonym adenosine 3',5'-diphosphate transport of GO:0071106, Changed synonym scope of GO:0071106 from "Related" to "Exact", Added synonym "adenosine 3'-phosphate-5'-phosphate transmembrane transport" to GO:0071106, Added general dbxref PubChem:159296 to synonym adenosine 3'-phosphate-5'-phosphate transmembrane transport of GO:0071106, Changed synonym scope of GO:0071106 from "Related" to "Exact", Created link GO:0071106 -OBO_REL:is_a-> GO:0055085, Created link GO:0071106 -OBO_REL:is_a-> GO:0015860, Assigned namespace "biological_process" to GO:0071106] * Changed name of GO:0071106 from "null" to "adenosine 3',5'-bisphosphate transmembrane transport" * Set definition of GO:0071106 to "The directed movement of adenosine 3',5'-bisphosphate across a membrane into, out of, within or between cells." * Added definition dbxref ChEBI:37240 to GO:0071106 * Added definition dbxref GOC:mah to GO:0071106 * Added definition dbxref PubChem:159296 to GO:0071106 * Added synonym "adenosine 3',5'-diphosphate transport" to GO:0071106 * Added general dbxref PubChem:159296 to synonym adenosine 3',5'-diphosphate transport of GO:0071106 * Changed synonym scope of GO:0071106 from "Related" to "Exact" * Added synonym "adenosine 3'-phosphate-5'-phosphate transmembrane transport" to GO:0071106 * Added general dbxref PubChem:159296 to synonym adenosine 3'-phosphate-5'-phosphate transmembrane transport of GO:0071106 * Changed synonym scope of GO:0071106 from "Related" to "Exact" * Created link GO:0071106 -OBO_REL:is_a-> GO:0055085 * Created link GO:0071106 -OBO_REL:is_a-> GO:0015860 * Assigned namespace "biological_process" to GO:0071106 * [Changed name of GO:0071107 from "null" to "response to parathyroid hormone stimulus", Set definition of GO:0071107 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a parathyroid hormone stimulus.", Added definition dbxref GOC:mah to GO:0071107, Created link GO:0071107 -OBO_REL:is_a-> GO:0009725, Assigned namespace "biological_process" to GO:0071107] * Changed name of GO:0071107 from "null" to "response to parathyroid hormone stimulus" * Set definition of GO:0071107 to "A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a parathyroid hormone stimulus." * Added definition dbxref GOC:mah to GO:0071107 * Created link GO:0071107 -OBO_REL:is_a-> GO:0009725 * Assigned namespace "biological_process" to GO:0071107 * [Changed name of GO:0071108 from "null" to "protein K48-linked deubiquitination", Set definition of GO:0071108 to "A protein deubiquitination process in which a K48-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is removed from a protein.", Added definition dbxref GOC:mah to GO:0071108, Created link GO:0071108 -OBO_REL:is_a-> GO:0016579, Assigned namespace "biological_process" to GO:0071108] * Changed name of GO:0071108 from "null" to "protein K48-linked deubiquitination" * Set definition of GO:0071108 to "A protein deubiquitination process in which a K48-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is removed from a protein." * Added definition dbxref GOC:mah to GO:0071108 * Created link GO:0071108 -OBO_REL:is_a-> GO:0016579 * Assigned namespace "biological_process" to GO:0071108 * [Changed name of GO:0071109 from "null" to "superior temporal gyrus development", Added comment "This term was added by GO_REF:0000021.", Set definition of GO:0071109 to "The process whose specific outcome is the progression of the superior temporal gyrus over time, from its formation to the mature structure. The superior temporal gyrus is a portion of the cerebral cortex that extends from the lateral sulcus to the superior temporal sulcus.", Added definition dbxref FMA:61905 to GO:0071109, Added definition dbxref GOC:mah to GO:0071109, Added definition dbxref PMID:11484000 to GO:0071109, Created link GO:0071109 -part_of-> GO:0021987, Created link GO:0071109 -OBO_REL:is_a-> GO:0048856, Assigned namespace "biological_process" to GO:0071109] * Changed name of GO:0071109 from "null" to "superior temporal gyrus development" * Added comment "This term was added by GO_REF:0000021." * Set definition of GO:0071109 to "The process whose specific outcome is the progression of the superior temporal gyrus over time, from its formation to the mature structure. The superior temporal gyrus is a portion of the cerebral cortex that extends from the lateral sulcus to the superior temporal sulcus." * Added definition dbxref FMA:61905 to GO:0071109 * Added definition dbxref GOC:mah to GO:0071109 * Added definition dbxref PMID:11484000 to GO:0071109 * Created link GO:0071109 -part_of-> GO:0021987 * Created link GO:0071109 -OBO_REL:is_a-> GO:0048856 * Assigned namespace "biological_process" to GO:0071109 * Added synonym "mitochondrial complex III" to GO:0005750 * Added general dbxref GOC:mcc to synonym mitochondrial complex III of GO:0005750 * Changed synonym scope of GO:0005750 from "Related" to "Exact" * Added synonym "mitochondrial cytochrome bc(1) complex" to GO:0005750 * Added general dbxref GOC:mcc to synonym mitochondrial cytochrome bc(1) complex of GO:0005750 * Changed synonym scope of GO:0005750 from "Related" to "Exact" * Added synonym "mitochondrial cytochrome bc1 complex" to GO:0005750 * Added general dbxref GOC:mcc to synonym mitochondrial cytochrome bc1 complex of GO:0005750 * Changed synonym scope of GO:0005750 from "Related" to "Exact" * Added synonym "mitochondrial electron transport complex III" to GO:0005750 * Added general dbxref GOC:mcc to synonym mitochondrial electron transport complex III of GO:0005750 * Added synonym "mitochondrial ubiquinol-cytochrome c oxidoreductase complex" to GO:0005750 * Added general dbxref GOC:mcc to synonym mitochondrial ubiquinol-cytochrome c oxidoreductase complex of GO:0005750 * Changed synonym scope of GO:0005750 from "Related" to "Exact" * Added synonym "mitochondrial ubiquinol-cytochrome-c reductase complex" to GO:0005750 * Added general dbxref GOC:mcc to synonym mitochondrial ubiquinol-cytochrome-c reductase complex of GO:0005750 * Changed synonym scope of GO:0005750 from "Related" to "Exact" * Added synonym "axonal membrane" to GO:0030673 * Added general dbxref GOC:vk to synonym axonal membrane of GO:0030673 * Changed synonym scope of GO:0030673 from "Related" to "Exact" * Changed name of GO:0044270 from "nitrogen compound catabolic process" to "cellular nitrogen compound catabolic process" * Deleted synonym "cellular nitrogen compound catabolic process" from GO:0044270 * Changed name of GO:0044271 from "nitrogen compound biosynthetic process" to "cellular nitrogen compound biosynthetic process" * Deleted synonym "cellular nitrogen compound biosynthetic process" from GO:0044271 From gocvs at genome.stanford.edu Fri Nov 13 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 13 Nov 2009 21:30:13 -0800 Subject: [Go-diff] GO update 11/13/2009 Message-ID: <200911140530.nAE5UDTm025576@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.881 by 1.885 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0044215 * Created object of type obo:TERM with id GO:0044216 * Created object of type obo:TERM with id GO:0044217 * Created object of type obo:TERM with id GO:0044218 * Created object of type obo:TERM with id GO:0044219 * Created object of type obo:TERM with id GO:0044220 * Created object of type obo:TERM with id GO:0044221 * Created object of type obo:TERM with id GO:0044222 * Created object of type obo:TERM with id GO:0044223 * Created object of type obo:TERM with id GO:0044224 * Created object of type obo:TERM with id GO:0071110 * Created object of type obo:TERM with id GO:0071111 * Created object of type obo:TERM with id GO:0071112 * Created object of type obo:TERM with id GO:0071113 * Created object of type obo:TERM with id GO:0071114 * Created object of type obo:TERM with id GO:0071115 * Created object of type obo:TERM with id GO:0071116 * Created object of type obo:TERM with id GO:0071117 * Created object of type obo:TERM with id GO:0071118 * Created object of type obo:TERM with id GO:0071119 * Created object of type obo:TERM with id GO:0071120 * Created object of type obo:TERM with id GO:0071121 * Created object of type obo:TERM with id GO:0071122 * Created object of type obo:TERM with id GO:0071123 * Created object of type obo:TERM with id GO:0071124 * Created object of type obo:TERM with id GO:0071125 * Created object of type obo:TERM with id GO:0071126 * Created object of type obo:TERM with id GO:0071127 * Created object of type obo:TERM with id GO:0071128 * Created object of type obo:TERM with id GO:0071129 * Created object of type obo:TERM with id GO:0071130 * Created object of type obo:TERM with id GO:0071131 * Created object of type obo:TERM with id GO:0071132 * Created object of type obo:TERM with id GO:0071133 * Created object of type obo:TERM with id GO:0071134 * Created object of type obo:TERM with id GO:0071135 * Created object of type obo:TERM with id GO:0071136 * Created object of type obo:TERM with id GO:0071137 * Created object of type obo:TERM with id GO:0071138 * Created object of type obo:TERM with id GO:0090093 * Created object of type obo:TERM with id GO:0090094 * Created object of type obo:TERM with id GO:0090095 * Created object of type obo:TERM with id GO:0090096 * Created object of type obo:TERM with id GO:0090097 * Created object of type obo:TERM with id GO:0090098 * Created object of type obo:TERM with id GO:0090099 * Created object of type obo:TERM with id GO:0090100 * Created object of type obo:TERM with id GO:0090101 * [Changed name of GO:0044215 from "null" to "other organism", Set definition of GO:0044215 to "A secondary organism with which the first organism is interacting.", Added definition dbxref GOC:jl to GO:0044215, Created link GO:0044215 -OBO_REL:is_a-> GO:0043245, Assigned namespace "cellular_component" to GO:0044215] * Changed name of GO:0044215 from "null" to "other organism" * Set definition of GO:0044215 to "A secondary organism with which the first organism is interacting." * Added definition dbxref GOC:jl to GO:0044215 * Created link GO:0044215 -OBO_REL:is_a-> GO:0043245 * Assigned namespace "cellular_component" to GO:0044215 * [Changed name of GO:0044216 from "null" to "other organism cell", Set definition of GO:0044216 to "A cell of a secondary organism with which the first organism is interacting.", Added definition dbxref GOC:jl to GO:0044216, Created link GO:0044216 -OBO_REL:is_a-> GO:0044217, Assigned namespace "cellular_component" to GO:0044216] * Changed name of GO:0044216 from "null" to "other organism cell" * Set definition of GO:0044216 to "A cell of a secondary organism with which the first organism is interacting." * Added definition dbxref GOC:jl to GO:0044216 * Created link GO:0044216 -OBO_REL:is_a-> GO:0044217 * Assigned namespace "cellular_component" to GO:0044216 * [Changed name of GO:0044217 from "null" to "other organism part", Set definition of GO:0044217 to "Any constituent part of a secondary organism with which the first organism is interacting.", Added definition dbxref GOC:jl to GO:0044217, Created link GO:0044217 -part_of-> GO:0044215, Created link GO:0044217 -OBO_REL:is_a-> GO:0044421, Assigned namespace "cellular_component" to GO:0044217] * Changed name of GO:0044217 from "null" to "other organism part" * Set definition of GO:0044217 to "Any constituent part of a secondary organism with which the first organism is interacting." * Added definition dbxref GOC:jl to GO:0044217 * Created link GO:0044217 -part_of-> GO:0044215 * Created link GO:0044217 -OBO_REL:is_a-> GO:0044421 * Assigned namespace "cellular_component" to GO:0044217 * [Changed name of GO:0044218 from "null" to "other organism cell membrane", Set definition of GO:0044218 to "The cell membrane of a secondary organism with which the first organism is interacting.", Added definition dbxref GOC:jl to GO:0044218, Added synonym "foreign membrane" to GO:0044218, Created link GO:0044218 -part_of-> GO:0044216, Created link GO:0044218 -OBO_REL:is_a-> GO:0044217, Assigned namespace "cellular_component" to GO:0044218] * Changed name of GO:0044218 from "null" to "other organism cell membrane" * Set definition of GO:0044218 to "The cell membrane of a secondary organism with which the first organism is interacting." * Added definition dbxref GOC:jl to GO:0044218 * Added synonym "foreign membrane" to GO:0044218 * Created link GO:0044218 -part_of-> GO:0044216 * Created link GO:0044218 -OBO_REL:is_a-> GO:0044217 * Assigned namespace "cellular_component" to GO:0044218 * [Changed name of GO:0044219 from "null" to "host cell plasmodesma", Set definition of GO:0044219 to "A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one host cell to that of an adjacent host cell.", Added definition dbxref GOC:rph to GO:0044219, Created link GO:0044219 -OBO_REL:is_a-> GO:0044156, Assigned namespace "cellular_component" to GO:0044219] * Changed name of GO:0044219 from "null" to "host cell plasmodesma" * Set definition of GO:0044219 to "A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one host cell to that of an adjacent host cell." * Added definition dbxref GOC:rph to GO:0044219 * Created link GO:0044219 -OBO_REL:is_a-> GO:0044156 * Assigned namespace "cellular_component" to GO:0044219 * [Changed name of GO:0044220 from "null" to "host cell perinuclear region of cytoplasm", Set definition of GO:0044220 to "The host cell cytoplasm situated near, or occurring around, the host nucleus.", Added definition dbxref GOC:rph to GO:0044220, Created link GO:0044220 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044220] * Changed name of GO:0044220 from "null" to "host cell perinuclear region of cytoplasm" * Set definition of GO:0044220 to "The host cell cytoplasm situated near, or occurring around, the host nucleus." * Added definition dbxref GOC:rph to GO:0044220 * Created link GO:0044220 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044220 * [Changed name of GO:0044221 from "null" to "host cell synapse", Set definition of GO:0044221 to "The junction between a nerve fiber of one host neuron and another host neuron or muscle fiber or glial cell; the site of interneuronal communication.", Added definition dbxref GOC:rph to GO:0044221, Created link GO:0044221 -OBO_REL:is_a-> GO:0044421, Created link GO:0044221 -part_of-> GO:0018995, Assigned namespace "cellular_component" to GO:0044221] * Changed name of GO:0044221 from "null" to "host cell synapse" * Set definition of GO:0044221 to "The junction between a nerve fiber of one host neuron and another host neuron or muscle fiber or glial cell; the site of interneuronal communication." * Added definition dbxref GOC:rph to GO:0044221 * Created link GO:0044221 -OBO_REL:is_a-> GO:0044421 * Created link GO:0044221 -part_of-> GO:0018995 * Assigned namespace "cellular_component" to GO:0044221 * [Changed name of GO:0044222 from "null" to "anammoxosome", Set definition of GO:0044222 to "An intracytoplasmic membrane-bounded compartment in anaerobic ammonium oxidation (anammox) bacteria, is the site of anammox catabolism.", Added definition dbxref GOC:dh to GO:0044222, Added definition dbxref PMID:17993524 to GO:0044222, Added definition dbxref PMID:19682260 to GO:0044222, Added GO:0044222 to category gosubset_prok, Created link GO:0044222 -OBO_REL:is_a-> GO:0044444, Assigned namespace "cellular_component" to GO:0044222] * Changed name of GO:0044222 from "null" to "anammoxosome" * Set definition of GO:0044222 to "An intracytoplasmic membrane-bounded compartment in anaerobic ammonium oxidation (anammox) bacteria, is the site of anammox catabolism." * Added definition dbxref GOC:dh to GO:0044222 * Added definition dbxref PMID:17993524 to GO:0044222 * Added definition dbxref PMID:19682260 to GO:0044222 * Added GO:0044222 to category gosubset_prok * Created link GO:0044222 -OBO_REL:is_a-> GO:0044444 * Assigned namespace "cellular_component" to GO:0044222 * [Changed name of GO:0044223 from "null" to "pirellulosome", Set definition of GO:0044223 to "A cytoplasmic structure found in bacterial phyla Planctomycetes and Verrucomicrobia containing a condensed nucleoid and ribosomes and surrounded by an intracytoplasmic membrane. It is surrounded by ribosome-free cytoplasm, in a compartment called the paryphoplasm.", Added definition dbxref GOC:dh to GO:0044223, Added definition dbxref PMID:19133117 to GO:0044223, Added GO:0044223 to category gosubset_prok, Created link GO:0044223 -OBO_REL:is_a-> GO:0044444, Assigned namespace "cellular_component" to GO:0044223] * Changed name of GO:0044223 from "null" to "pirellulosome" * Set definition of GO:0044223 to "A cytoplasmic structure found in bacterial phyla Planctomycetes and Verrucomicrobia containing a condensed nucleoid and ribosomes and surrounded by an intracytoplasmic membrane. It is surrounded by ribosome-free cytoplasm, in a compartment called the paryphoplasm." * Added definition dbxref GOC:dh to GO:0044223 * Added definition dbxref PMID:19133117 to GO:0044223 * Added GO:0044223 to category gosubset_prok * Created link GO:0044223 -OBO_REL:is_a-> GO:0044444 * Assigned namespace "cellular_component" to GO:0044223 * [Changed name of GO:0044224 from "null" to "juxtaparanode region of axon", Set definition of GO:0044224 to "A region of an axon near a node of Ranvier that is between the paranode and internode regions.", Added definition dbxref GOC:jl to GO:0044224, Added definition dbxref PMID:10624965 to GO:0044224, Added definition dbxref PMID:14682359 to GO:0044224, Added synonym "juxtaparanodal region" to GO:0044224, Changed synonym scope of GO:0044224 from "Related" to "Exact", Added synonym "juxtaparanode" to GO:0044224, Changed synonym scope of GO:0044224 from "Related" to "Exact", Created link GO:0044224 -OBO_REL:is_a-> GO:0033267, Assigned namespace "cellular_component" to GO:0044224] * Changed name of GO:0044224 from "null" to "juxtaparanode region of axon" * Set definition of GO:0044224 to "A region of an axon near a node of Ranvier that is between the paranode and internode regions." * Added definition dbxref GOC:jl to GO:0044224 * Added definition dbxref PMID:10624965 to GO:0044224 * Added definition dbxref PMID:14682359 to GO:0044224 * Added synonym "juxtaparanodal region" to GO:0044224 * Changed synonym scope of GO:0044224 from "Related" to "Exact" * Added synonym "juxtaparanode" to GO:0044224 * Changed synonym scope of GO:0044224 from "Related" to "Exact" * Created link GO:0044224 -OBO_REL:is_a-> GO:0033267 * Assigned namespace "cellular_component" to GO:0044224 * [Changed name of GO:0071110 from "null" to "histone biotinylation", Set definition of GO:0071110 to "The modification of a histone by the addition of a biotinyl group.", Added definition dbxref GOC:rph to GO:0071110, Added definition dbxref PMID:14613969 to GO:0071110, Added definition dbxref PMID:19019041 to GO:0071110, Created link GO:0071110 -OBO_REL:is_a-> GO:0016570, Created link GO:0071110 -OBO_REL:is_a-> GO:0006473, Assigned namespace "biological_process" to GO:0071110] * Changed name of GO:0071110 from "null" to "histone biotinylation" * Set definition of GO:0071110 to "The modification of a histone by the addition of a biotinyl group." * Added definition dbxref GOC:rph to GO:0071110 * Added definition dbxref PMID:14613969 to GO:0071110 * Added definition dbxref PMID:19019041 to GO:0071110 * Created link GO:0071110 -OBO_REL:is_a-> GO:0016570 * Created link GO:0071110 -OBO_REL:is_a-> GO:0006473 * Assigned namespace "biological_process" to GO:0071110 * [Changed name of GO:0071111 from "null" to "cyclic-guanylate-specific phosphodiesterase activity", Set definition of GO:0071111 to "Catalysis of the reaction: H2O + cyclic di-3',5'-guanylate + H2O = 5'-phosphoguanylyl(3'->5')guanosine.", Added definition dbxref EC:3.1.4.52 to GO:0071111, Added definition dbxref MetaCyc:RXN0-4181 to GO:0071111, Added general dbxref EC:3.1.4.52 to GO:0071111, Added general dbxref MetaCyc:RXN0-4181 to GO:0071111, Added GO:0071111 to category gosubset_prok, Added synonym "c-di-GMP phosphodiesterase activity" to GO:0071111, Added general dbxref EC:3.1.4.52 to synonym c-di-GMP phosphodiesterase activity of GO:0071111, Changed synonym scope of GO:0071111 from "Related" to "Exact", Added synonym "c-di-GMP-specific phosphodiesterase activity" to GO:0071111, Added general dbxref EC:3.1.4.52 to synonym c-di-GMP-specific phosphodiesterase activity of GO:0071111, Changed synonym scope of GO:0071111 from "Related" to "Exact", Added synonym "cyclic bis(3->5')diguanylate phosphodiesterase activity" to GO:0071111, Added general dbxref EC:3.1.4.52 to synonym cyclic bis(3->5')diguanylate phosphodiesterase activity of GO:0071111, Changed synonym scope of GO:0071111 from "Related" to "Exact", Added synonym "PDEA1" to GO:0071111, Added general dbxref EC:3.1.4.52 to synonym PDEA1 of GO:0071111, Added synonym "phosphodiesterase A1 activity" to GO:0071111, Added general dbxref EC:3.1.4.52 to synonym phosphodiesterase A1 activity of GO:0071111, Added synonym "VieA" to GO:0071111, Added general dbxref EC:3.1.4.52 to synonym VieA of GO:0071111, Created link GO:0071111 -OBO_REL:is_a-> GO:0008081, Assigned namespace "molecular_function" to GO:0071111] * Changed name of GO:0071111 from "null" to "cyclic-guanylate-specific phosphodiesterase activity" * Set definition of GO:0071111 to "Catalysis of the reaction: H2O + cyclic di-3',5'-guanylate + H2O = 5'-phosphoguanylyl(3'->5')guanosine." * Added definition dbxref EC:3.1.4.52 to GO:0071111 * Added definition dbxref MetaCyc:RXN0-4181 to GO:0071111 * Added general dbxref EC:3.1.4.52 to GO:0071111 * Added general dbxref MetaCyc:RXN0-4181 to GO:0071111 * Added GO:0071111 to category gosubset_prok * Added synonym "c-di-GMP phosphodiesterase activity" to GO:0071111 * Added general dbxref EC:3.1.4.52 to synonym c-di-GMP phosphodiesterase activity of GO:0071111 * Changed synonym scope of GO:0071111 from "Related" to "Exact" * Added synonym "c-di-GMP-specific phosphodiesterase activity" to GO:0071111 * Added general dbxref EC:3.1.4.52 to synonym c-di-GMP-specific phosphodiesterase activity of GO:0071111 * Changed synonym scope of GO:0071111 from "Related" to "Exact" * Added synonym "cyclic bis(3->5')diguanylate phosphodiesterase activity" to GO:0071111 * Added general dbxref EC:3.1.4.52 to synonym cyclic bis(3->5')diguanylate phosphodiesterase activity of GO:0071111 * Changed synonym scope of GO:0071111 from "Related" to "Exact" * Added synonym "PDEA1" to GO:0071111 * Added general dbxref EC:3.1.4.52 to synonym PDEA1 of GO:0071111 * Added synonym "phosphodiesterase A1 activity" to GO:0071111 * Added general dbxref EC:3.1.4.52 to synonym phosphodiesterase A1 activity of GO:0071111 * Added synonym "VieA" to GO:0071111 * Added general dbxref EC:3.1.4.52 to synonym VieA of GO:0071111 * Created link GO:0071111 -OBO_REL:is_a-> GO:0008081 * Assigned namespace "molecular_function" to GO:0071111 * [Changed name of GO:0071112 from "null" to "alpha4-beta4 integrin-EMILIN-1 complex", Set definition of GO:0071112 to "A protein complex that consists of an alpha4-beta4 integrin complex bound to EMILIN-1 (ElastinMicrofibril Interface Located ProteIN).", Added definition dbxref PMID:12456677 to GO:0071112, Added synonym "ITGA4-ITGB4-EMILIN1 complex" to GO:0071112, Added general dbxref CORUM:2417 to synonym ITGA4-ITGB4-EMILIN1 complex of GO:0071112, Changed synonym scope of GO:0071112 from "Related" to "Narrow", Created link GO:0071112 -OBO_REL:is_a-> GO:0043234, Created link GO:0071112 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071112] * Changed name of GO:0071112 from "null" to "alpha4-beta4 integrin-EMILIN-1 complex" * Set definition of GO:0071112 to "A protein complex that consists of an alpha4-beta4 integrin complex bound to EMILIN-1 (ElastinMicrofibril Interface Located ProteIN)." * Added definition dbxref PMID:12456677 to GO:0071112 * Added synonym "ITGA4-ITGB4-EMILIN1 complex" to GO:0071112 * Added general dbxref CORUM:2417 to synonym ITGA4-ITGB4-EMILIN1 complex of GO:0071112 * Changed synonym scope of GO:0071112 from "Related" to "Narrow" * Created link GO:0071112 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071112 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071112 * [Changed name of GO:0071113 from "null" to "alphaIIb-beta3 integrin-ICAM-4 complex", Set definition of GO:0071113 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell adhesion molecule ICAM-4.", Added definition dbxref PMID:12477717 to GO:0071113, Added synonym "ITGAIIb-ITGB3-ICAM4 complex" to GO:0071113, Added general dbxref CORUM:3115 to synonym ITGAIIb-ITGB3-ICAM4 complex of GO:0071113, Changed synonym scope of GO:0071113 from "Related" to "Narrow", Created link GO:0071113 -OBO_REL:is_a-> GO:0043234, Created link GO:0071113 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071113] * Changed name of GO:0071113 from "null" to "alphaIIb-beta3 integrin-ICAM-4 complex" * Set definition of GO:0071113 to "A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell adhesion molecule ICAM-4." * Added definition dbxref PMID:12477717 to GO:0071113 * Added synonym "ITGAIIb-ITGB3-ICAM4 complex" to GO:0071113 * Added general dbxref CORUM:3115 to synonym ITGAIIb-ITGB3-ICAM4 complex of GO:0071113 * Changed synonym scope of GO:0071113 from "Related" to "Narrow" * Created link GO:0071113 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071113 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071113 * [Changed name of GO:0071114 from "null" to "alphaV-beta3 integrin-tumstatin complex", Set definition of GO:0071114 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to tumstatin, the NC1 domain of the alpha3 chain of type IV collagen.", Added definition dbxref PMID:12682293 to GO:0071114, Added synonym "ITGAV-ITGB3-COL4A3 complex" to GO:0071114, Added general dbxref CORUM:2365 to synonym ITGAV-ITGB3-COL4A3 complex of GO:0071114, Changed synonym scope of GO:0071114 from "Related" to "Narrow", Created link GO:0071114 -OBO_REL:is_a-> GO:0044459, Created link GO:0071114 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071114] * Changed name of GO:0071114 from "null" to "alphaV-beta3 integrin-tumstatin complex" * Set definition of GO:0071114 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to tumstatin, the NC1 domain of the alpha3 chain of type IV collagen." * Added definition dbxref PMID:12682293 to GO:0071114 * Added synonym "ITGAV-ITGB3-COL4A3 complex" to GO:0071114 * Added general dbxref CORUM:2365 to synonym ITGAV-ITGB3-COL4A3 complex of GO:0071114 * Changed synonym scope of GO:0071114 from "Related" to "Narrow" * Created link GO:0071114 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071114 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071114 * [Changed name of GO:0071115 from "null" to "alpha5-beta1 integrin-endostatin complex", Set definition of GO:0071115 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to endostatin, the NC1 domain of the alpha1 chain of type XVIII collagen.", Added definition dbxref PMID:12682293 to GO:0071115, Added synonym "ITGA5-ITGB1-CAL4A3 complex" to GO:0071115, Added general dbxref CORUM:2853 to synonym ITGA5-ITGB1-CAL4A3 complex of GO:0071115, Changed synonym scope of GO:0071115 from "Related" to "Narrow", Created link GO:0071115 -OBO_REL:is_a-> GO:0044459, Created link GO:0071115 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071115] * Changed name of GO:0071115 from "null" to "alpha5-beta1 integrin-endostatin complex" * Set definition of GO:0071115 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to endostatin, the NC1 domain of the alpha1 chain of type XVIII collagen." * Added definition dbxref PMID:12682293 to GO:0071115 * Added synonym "ITGA5-ITGB1-CAL4A3 complex" to GO:0071115 * Added general dbxref CORUM:2853 to synonym ITGA5-ITGB1-CAL4A3 complex of GO:0071115 * Changed synonym scope of GO:0071115 from "Related" to "Narrow" * Created link GO:0071115 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071115 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071115 * [Changed name of GO:0071116 from "null" to "alpha6-beta1 integrin-CYR61 complex", Set definition of GO:0071116 to "A protein complex that consists of an alpha6-beta1 integrin complex bound to CYR61, a cysteine-rich protein involved in angiogenesis.", Added definition dbxref PMID:12826661 to GO:0071116, Added synonym "ITGA6-ITGB1-CYR61 complex" to GO:0071116, Added general dbxref CORUM:2437 to synonym ITGA6-ITGB1-CYR61 complex of GO:0071116, Changed synonym scope of GO:0071116 from "Related" to "Narrow", Created link GO:0071116 -OBO_REL:is_a-> GO:0043234, Created link GO:0071116 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071116] * Changed name of GO:0071116 from "null" to "alpha6-beta1 integrin-CYR61 complex" * Set definition of GO:0071116 to "A protein complex that consists of an alpha6-beta1 integrin complex bound to CYR61, a cysteine-rich protein involved in angiogenesis." * Added definition dbxref PMID:12826661 to GO:0071116 * Added synonym "ITGA6-ITGB1-CYR61 complex" to GO:0071116 * Added general dbxref CORUM:2437 to synonym ITGA6-ITGB1-CYR61 complex of GO:0071116 * Changed synonym scope of GO:0071116 from "Related" to "Narrow" * Created link GO:0071116 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071116 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071116 * [Changed name of GO:0071117 from "null" to "alpha5-beta1 integrin-fibronectin-NOV complex", Set definition of GO:0071117 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to fibronectin and the extracellular matrix protein NOV.", Added definition dbxref PMID:12902636 to GO:0071117, Added synonym "ITGA5-ITGB1-FN-1-NOV complex" to GO:0071117, Added general dbxref CORUM:2850 to synonym ITGA5-ITGB1-FN-1-NOV complex of GO:0071117, Changed synonym scope of GO:0071117 from "Related" to "Narrow", Created link GO:0071117 -OBO_REL:is_a-> GO:0043234, Created link GO:0071117 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071117] * Changed name of GO:0071117 from "null" to "alpha5-beta1 integrin-fibronectin-NOV complex" * Set definition of GO:0071117 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to fibronectin and the extracellular matrix protein NOV." * Added definition dbxref PMID:12902636 to GO:0071117 * Added synonym "ITGA5-ITGB1-FN-1-NOV complex" to GO:0071117 * Added general dbxref CORUM:2850 to synonym ITGA5-ITGB1-FN-1-NOV complex of GO:0071117 * Changed synonym scope of GO:0071117 from "Related" to "Narrow" * Created link GO:0071117 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071117 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071117 * [Changed name of GO:0071118 from "null" to "alphaV-beta3 integrin-NOV complex", Set definition of GO:0071118 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to the extracellular matrix protein NOV.", Added definition dbxref PMID:12902636 to GO:0071118, Added synonym "ITGAV-ITGB3-FN-1-NOV complex" to GO:0071118, Added general dbxref CORUM:2849 to synonym ITGAV-ITGB3-FN-1-NOV complex of GO:0071118, Changed synonym scope of GO:0071118 from "Related" to "Narrow", Created link GO:0071118 -OBO_REL:is_a-> GO:0044459, Created link GO:0071118 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071118] * Changed name of GO:0071118 from "null" to "alphaV-beta3 integrin-NOV complex" * Set definition of GO:0071118 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to the extracellular matrix protein NOV." * Added definition dbxref PMID:12902636 to GO:0071118 * Added synonym "ITGAV-ITGB3-FN-1-NOV complex" to GO:0071118 * Added general dbxref CORUM:2849 to synonym ITGAV-ITGB3-FN-1-NOV complex of GO:0071118 * Changed synonym scope of GO:0071118 from "Related" to "Narrow" * Created link GO:0071118 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071118 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071118 * [Changed name of GO:0071119 from "null" to "alpha7-beta1 integrin-nicotinamide riboside kinase complex", Set definition of GO:0071119 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to nicotinamide riboside kinase 2 (also known as muscle integrin binding protein, MIBP).", Added definition dbxref PMID:12941630 to GO:0071119, Added synonym "ITGA7-ITGB1-ITGB1BP3 complex" to GO:0071119, Added general dbxref CORUM:2397 to synonym ITGA7-ITGB1-ITGB1BP3 complex of GO:0071119, Changed synonym scope of GO:0071119 from "Related" to "Narrow", Created link GO:0071119 -OBO_REL:is_a-> GO:0043234, Created link GO:0071119 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071119] * Changed name of GO:0071119 from "null" to "alpha7-beta1 integrin-nicotinamide riboside kinase complex" * Set definition of GO:0071119 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to nicotinamide riboside kinase 2 (also known as muscle integrin binding protein, MIBP)." * Added definition dbxref PMID:12941630 to GO:0071119 * Added synonym "ITGA7-ITGB1-ITGB1BP3 complex" to GO:0071119 * Added general dbxref CORUM:2397 to synonym ITGA7-ITGB1-ITGB1BP3 complex of GO:0071119 * Changed synonym scope of GO:0071119 from "Related" to "Narrow" * Created link GO:0071119 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071119 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071119 * [Changed name of GO:0071120 from "null" to "alpha4-beta1 integrin-CD47 complex", Set definition of GO:0071120 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to the cell surface antigen CD47.", Added definition dbxref PMID:15292185 to GO:0071120, Added synonym "ITGA4-ITGB1-CB47 complex" to GO:0071120, Added general dbxref CORUM:2423 to synonym ITGA4-ITGB1-CB47 complex of GO:0071120, Changed synonym scope of GO:0071120 from "Related" to "Narrow", Created link GO:0071120 -OBO_REL:is_a-> GO:0044459, Created link GO:0071120 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071120] * Changed name of GO:0071120 from "null" to "alpha4-beta1 integrin-CD47 complex" * Set definition of GO:0071120 to "A protein complex that consists of an alpha4-beta1 integrin complex bound to the cell surface antigen CD47." * Added definition dbxref PMID:15292185 to GO:0071120 * Added synonym "ITGA4-ITGB1-CB47 complex" to GO:0071120 * Added general dbxref CORUM:2423 to synonym ITGA4-ITGB1-CB47 complex of GO:0071120 * Changed synonym scope of GO:0071120 from "Related" to "Narrow" * Created link GO:0071120 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071120 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071120 * [Changed name of GO:0071121 from "null" to "alpha9-beta1 integrin-VEGF-D complex", Set definition of GO:0071121 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor D.", Added definition dbxref PMID:15590642 to GO:0071121, Added synonym "ITGA9-ITGB1-FIGF complex" to GO:0071121, Added general dbxref CORUM:2446 to synonym ITGA9-ITGB1-FIGF complex of GO:0071121, Changed synonym scope of GO:0071121 from "Related" to "Narrow", Created link GO:0071121 -OBO_REL:is_a-> GO:0043234, Created link GO:0071121 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071121] * Changed name of GO:0071121 from "null" to "alpha9-beta1 integrin-VEGF-D complex" * Set definition of GO:0071121 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor D." * Added definition dbxref PMID:15590642 to GO:0071121 * Added synonym "ITGA9-ITGB1-FIGF complex" to GO:0071121 * Added general dbxref CORUM:2446 to synonym ITGA9-ITGB1-FIGF complex of GO:0071121 * Changed synonym scope of GO:0071121 from "Related" to "Narrow" * Created link GO:0071121 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071121 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071121 * [Changed name of GO:0071122 from "null" to "alpha9-beta1 integrin-VEGF-A complex", Set definition of GO:0071122 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor A.", Added definition dbxref PMID:17363377 to GO:0071122, Added synonym "ITGA9-ITGB1-VEGFA complex" to GO:0071122, Added general dbxref CORUM:2972 to synonym ITGA9-ITGB1-VEGFA complex of GO:0071122, Changed synonym scope of GO:0071122 from "Related" to "Narrow", Created link GO:0071122 -OBO_REL:is_a-> GO:0044459, Created link GO:0071122 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071122] * Changed name of GO:0071122 from "null" to "alpha9-beta1 integrin-VEGF-A complex" * Set definition of GO:0071122 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor A." * Added definition dbxref PMID:17363377 to GO:0071122 * Added synonym "ITGA9-ITGB1-VEGFA complex" to GO:0071122 * Added general dbxref CORUM:2972 to synonym ITGA9-ITGB1-VEGFA complex of GO:0071122 * Changed synonym scope of GO:0071122 from "Related" to "Narrow" * Created link GO:0071122 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071122 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071122 * [Changed name of GO:0071123 from "null" to "alpha9-beta1 integrin-VEGF-C complex", Set definition of GO:0071123 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor C.", Added definition dbxref PMID:15590642 to GO:0071123, Added synonym "ITGA9-ITGB1-VEGFC complex" to GO:0071123, Added general dbxref CORUM:2971 to synonym ITGA9-ITGB1-VEGFC complex of GO:0071123, Changed synonym scope of GO:0071123 from "Related" to "Narrow", Created link GO:0071123 -OBO_REL:is_a-> GO:0044459, Created link GO:0071123 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071123] * Changed name of GO:0071123 from "null" to "alpha9-beta1 integrin-VEGF-C complex" * Set definition of GO:0071123 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular endothelial growth factor C." * Added definition dbxref PMID:15590642 to GO:0071123 * Added synonym "ITGA9-ITGB1-VEGFC complex" to GO:0071123 * Added general dbxref CORUM:2971 to synonym ITGA9-ITGB1-VEGFC complex of GO:0071123 * Changed synonym scope of GO:0071123 from "Related" to "Narrow" * Created link GO:0071123 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071123 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071123 * [Changed name of GO:0071124 from "null" to "alpha1-beta1 integrin-tyrosine-protein phosphatase non-receptor type 2 complex", Set definition of GO:0071124 to "A protein complex that consists of an alpha1-beta1 integrin complex bound to tyrosine-protein phosphatase non-receptor type 2.", Added definition dbxref PMID:15592458 to GO:0071124, Added synonym "ITGA1-ITGB1-PTPN2 complex" to GO:0071124, Added general dbxref CORUM:2435 to synonym ITGA1-ITGB1-PTPN2 complex of GO:0071124, Changed synonym scope of GO:0071124 from "Related" to "Narrow", Created link GO:0071124 -OBO_REL:is_a-> GO:0043234, Created link GO:0071124 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071124] * Changed name of GO:0071124 from "null" to "alpha1-beta1 integrin-tyrosine-protein phosphatase non-receptor type 2 complex" * Set definition of GO:0071124 to "A protein complex that consists of an alpha1-beta1 integrin complex bound to tyrosine-protein phosphatase non-receptor type 2." * Added definition dbxref PMID:15592458 to GO:0071124 * Added synonym "ITGA1-ITGB1-PTPN2 complex" to GO:0071124 * Added general dbxref CORUM:2435 to synonym ITGA1-ITGB1-PTPN2 complex of GO:0071124 * Changed synonym scope of GO:0071124 from "Related" to "Narrow" * Created link GO:0071124 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071124 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071124 * [Changed name of GO:0071125 from "null" to "alphaV-beta3 integrin-EGFR complex", Set definition of GO:0071125 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to epidermal growth factor receptor.", Added definition dbxref PMID:15834425 to GO:0071125, Added synonym "ITGAV-ITGB3-EGFR complex" to GO:0071125, Added general dbxref CORUM:2369 to synonym ITGAV-ITGB3-EGFR complex of GO:0071125, Changed synonym scope of GO:0071125 from "Related" to "Narrow", Created link GO:0071125 -OBO_REL:is_a-> GO:0044459, Created link GO:0071125 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071125] * Changed name of GO:0071125 from "null" to "alphaV-beta3 integrin-EGFR complex" * Set definition of GO:0071125 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to epidermal growth factor receptor." * Added definition dbxref PMID:15834425 to GO:0071125 * Added synonym "ITGAV-ITGB3-EGFR complex" to GO:0071125 * Added general dbxref CORUM:2369 to synonym ITGAV-ITGB3-EGFR complex of GO:0071125 * Changed synonym scope of GO:0071125 from "Related" to "Narrow" * Created link GO:0071125 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071125 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071125 * [Changed name of GO:0071126 from "null" to "alphaV-beta6 integrin-osteopontin complex", Set definition of GO:0071126 to "A protein complex that consists of an alphaV-beta6 integrin complex bound to osteopontin.", Added definition dbxref PMID:16005200 to GO:0071126, Added synonym "ITGAV-ITGB6-SPP1 complex" to GO:0071126, Added general dbxref CORUM:2352 to synonym ITGAV-ITGB6-SPP1 complex of GO:0071126, Changed synonym scope of GO:0071126 from "Related" to "Narrow", Created link GO:0071126 -OBO_REL:is_a-> GO:0043234, Created link GO:0071126 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071126] * Changed name of GO:0071126 from "null" to "alphaV-beta6 integrin-osteopontin complex" * Set definition of GO:0071126 to "A protein complex that consists of an alphaV-beta6 integrin complex bound to osteopontin." * Added definition dbxref PMID:16005200 to GO:0071126 * Added synonym "ITGAV-ITGB6-SPP1 complex" to GO:0071126 * Added general dbxref CORUM:2352 to synonym ITGAV-ITGB6-SPP1 complex of GO:0071126 * Changed synonym scope of GO:0071126 from "Related" to "Narrow" * Created link GO:0071126 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071126 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071126 * [Changed name of GO:0071127 from "null" to "alpha9-beta1 integrin-osteopontin complex", Set definition of GO:0071127 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to osteopontin.", Added definition dbxref PMID:16005200 to GO:0071127, Added synonym "ITGA9-ITGB1-SPP1 complex" to GO:0071127, Added general dbxref CORUM:3111 to synonym ITGA9-ITGB1-SPP1 complex of GO:0071127, Changed synonym scope of GO:0071127 from "Related" to "Narrow", Created link GO:0071127 -OBO_REL:is_a-> GO:0044459, Created link GO:0071127 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071127] * Changed name of GO:0071127 from "null" to "alpha9-beta1 integrin-osteopontin complex" * Set definition of GO:0071127 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to osteopontin." * Added definition dbxref PMID:16005200 to GO:0071127 * Added synonym "ITGA9-ITGB1-SPP1 complex" to GO:0071127 * Added general dbxref CORUM:3111 to synonym ITGA9-ITGB1-SPP1 complex of GO:0071127 * Changed synonym scope of GO:0071127 from "Related" to "Narrow" * Created link GO:0071127 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071127 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071127 * [Changed name of GO:0071128 from "null" to "alpha5-beta1 integrin-osteopontin complex", Set definition of GO:0071128 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to osteopontin.", Added definition dbxref PMID:16005200 to GO:0071128, Added synonym "ITGA5-ITGB1-SPP1 complex" to GO:0071128, Added general dbxref CORUM:3112 to synonym ITGA5-ITGB1-SPP1 complex of GO:0071128, Changed synonym scope of GO:0071128 from "Related" to "Narrow", Created link GO:0071128 -OBO_REL:is_a-> GO:0044459, Created link GO:0071128 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071128] * Changed name of GO:0071128 from "null" to "alpha5-beta1 integrin-osteopontin complex" * Set definition of GO:0071128 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to osteopontin." * Added definition dbxref PMID:16005200 to GO:0071128 * Added synonym "ITGA5-ITGB1-SPP1 complex" to GO:0071128 * Added general dbxref CORUM:3112 to synonym ITGA5-ITGB1-SPP1 complex of GO:0071128 * Changed synonym scope of GO:0071128 from "Related" to "Narrow" * Created link GO:0071128 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071128 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071128 * [Changed name of GO:0071129 from "null" to "alphaV-beta3 integrin-LPP3 complex", Set definition of GO:0071129 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to lipid phosphate phosphohydrolase-3.", Added definition dbxref PMID:16099422 to GO:0071129, Added synonym "ITGAV-ITGB3-PPAP2B complex" to GO:0071129, Added general dbxref CORUM:2366 to synonym ITGAV-ITGB3-PPAP2B complex of GO:0071129, Changed synonym scope of GO:0071129 from "Related" to "Narrow", Created link GO:0071129 -OBO_REL:is_a-> GO:0043234, Created link GO:0071129 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071129] * Changed name of GO:0071129 from "null" to "alphaV-beta3 integrin-LPP3 complex" * Set definition of GO:0071129 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to lipid phosphate phosphohydrolase-3." * Added definition dbxref PMID:16099422 to GO:0071129 * Added synonym "ITGAV-ITGB3-PPAP2B complex" to GO:0071129 * Added general dbxref CORUM:2366 to synonym ITGAV-ITGB3-PPAP2B complex of GO:0071129 * Changed synonym scope of GO:0071129 from "Related" to "Narrow" * Created link GO:0071129 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071129 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071129 * [Changed name of GO:0071130 from "null" to "alpha5-beta1 integrin-LPP3 complex", Set definition of GO:0071130 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to lipid phosphate phosphohydrolase-3.", Added definition dbxref PMID:16099422 to GO:0071130, Added synonym "ITGA5-ITGB1-PPAP2B complex" to GO:0071130, Added general dbxref CORUM:2386 to synonym ITGA5-ITGB1-PPAP2B complex of GO:0071130, Changed synonym scope of GO:0071130 from "Related" to "Narrow", Created link GO:0071130 -OBO_REL:is_a-> GO:0044459, Created link GO:0071130 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071130] * Changed name of GO:0071130 from "null" to "alpha5-beta1 integrin-LPP3 complex" * Set definition of GO:0071130 to "A protein complex that consists of an alpha5-beta1 integrin complex bound to lipid phosphate phosphohydrolase-3." * Added definition dbxref PMID:16099422 to GO:0071130 * Added synonym "ITGA5-ITGB1-PPAP2B complex" to GO:0071130 * Added general dbxref CORUM:2386 to synonym ITGA5-ITGB1-PPAP2B complex of GO:0071130 * Changed synonym scope of GO:0071130 from "Related" to "Narrow" * Created link GO:0071130 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071130 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071130 * [Changed name of GO:0071131 from "null" to "alphaV-beta3 integrin-laminin alpha-4 complex", Set definition of GO:0071131 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to laminin alpha-4.", Added definition dbxref PMID:16824487 to GO:0071131, Added synonym "ITGAV-ITGB3-LAMA4 complex" to GO:0071131, Added general dbxref CORUM:2374 to synonym ITGAV-ITGB3-LAMA4 complex of GO:0071131, Changed synonym scope of GO:0071131 from "Related" to "Narrow", Created link GO:0071131 -OBO_REL:is_a-> GO:0044459, Created link GO:0071131 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071131] * Changed name of GO:0071131 from "null" to "alphaV-beta3 integrin-laminin alpha-4 complex" * Set definition of GO:0071131 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to laminin alpha-4." * Added definition dbxref PMID:16824487 to GO:0071131 * Added synonym "ITGAV-ITGB3-LAMA4 complex" to GO:0071131 * Added general dbxref CORUM:2374 to synonym ITGAV-ITGB3-LAMA4 complex of GO:0071131 * Changed synonym scope of GO:0071131 from "Related" to "Narrow" * Created link GO:0071131 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071131 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071131 * [Changed name of GO:0071132 from "null" to "alphaX-beta2 integrin-ICAM-4 complex", Set definition of GO:0071132 to "A protein complex that consists of an alphaX-beta2 integrin complex bound to intercellular adhesion molecule 4.", Added definition dbxref PMID:16985175 to GO:0071132, Added synonym "ITGAX-ITGB2-ICAM4 complex" to GO:0071132, Added general dbxref CORUM:3114 to synonym ITGAX-ITGB2-ICAM4 complex of GO:0071132, Changed synonym scope of GO:0071132 from "Related" to "Narrow", Created link GO:0071132 -OBO_REL:is_a-> GO:0043234, Created link GO:0071132 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071132] * Changed name of GO:0071132 from "null" to "alphaX-beta2 integrin-ICAM-4 complex" * Set definition of GO:0071132 to "A protein complex that consists of an alphaX-beta2 integrin complex bound to intercellular adhesion molecule 4." * Added definition dbxref PMID:16985175 to GO:0071132 * Added synonym "ITGAX-ITGB2-ICAM4 complex" to GO:0071132 * Added general dbxref CORUM:3114 to synonym ITGAX-ITGB2-ICAM4 complex of GO:0071132 * Changed synonym scope of GO:0071132 from "Related" to "Narrow" * Created link GO:0071132 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071132 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071132 * [Changed name of GO:0071133 from "null" to "alpha9-beta1 integrin-ADAM8 complex", Set definition of GO:0071133 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM8.", Added definition dbxref PMID:16995821 to GO:0071133, Added synonym "ITGA9-ITGB1-ADAM8 complex" to GO:0071133, Added general dbxref CORUM:2989 to synonym ITGA9-ITGB1-ADAM8 complex of GO:0071133, Changed synonym scope of GO:0071133 from "Related" to "Narrow", Created link GO:0071133 -OBO_REL:is_a-> GO:0043234, Created link GO:0071133 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071133] * Changed name of GO:0071133 from "null" to "alpha9-beta1 integrin-ADAM8 complex" * Set definition of GO:0071133 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM8." * Added definition dbxref PMID:16995821 to GO:0071133 * Added synonym "ITGA9-ITGB1-ADAM8 complex" to GO:0071133 * Added general dbxref CORUM:2989 to synonym ITGA9-ITGB1-ADAM8 complex of GO:0071133 * Changed synonym scope of GO:0071133 from "Related" to "Narrow" * Created link GO:0071133 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071133 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071133 * [Changed name of GO:0071134 from "null" to "alpha9-beta1 integrin-thrombospondin-1 complex", Set definition of GO:0071134 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to thrombospondin-1.", Added definition dbxref PMID:17413041 to GO:0071134, Added synonym "ITGA9-ITGB1-THBS1 complex" to GO:0071134, Added general dbxref CORUM:2967 to synonym ITGA9-ITGB1-THBS1 complex of GO:0071134, Changed synonym scope of GO:0071134 from "Related" to "Narrow", Created link GO:0071134 -OBO_REL:is_a-> GO:0043234, Created link GO:0071134 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071134] * Changed name of GO:0071134 from "null" to "alpha9-beta1 integrin-thrombospondin-1 complex" * Set definition of GO:0071134 to "A protein complex that consists of an alpha9-beta1 integrin complex bound to thrombospondin-1." * Added definition dbxref PMID:17413041 to GO:0071134 * Added synonym "ITGA9-ITGB1-THBS1 complex" to GO:0071134 * Added general dbxref CORUM:2967 to synonym ITGA9-ITGB1-THBS1 complex of GO:0071134 * Changed synonym scope of GO:0071134 from "Related" to "Narrow" * Created link GO:0071134 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071134 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071134 * [Changed name of GO:0071135 from "null" to "alpha7-beta1 integrin-focal adhesion kinase complex", Set definition of GO:0071135 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to focal adhesion kinase.", Added definition dbxref PMID:17598176 to GO:0071135, Added synonym "ITGA7-ITGB1-PTK2 complex" to GO:0071135, Added general dbxref CORUM:3106 to synonym ITGA7-ITGB1-PTK2 complex of GO:0071135, Changed synonym scope of GO:0071135 from "Related" to "Narrow", Created link GO:0071135 -OBO_REL:is_a-> GO:0043234, Created link GO:0071135 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071135] * Changed name of GO:0071135 from "null" to "alpha7-beta1 integrin-focal adhesion kinase complex" * Set definition of GO:0071135 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to focal adhesion kinase." * Added definition dbxref PMID:17598176 to GO:0071135 * Added synonym "ITGA7-ITGB1-PTK2 complex" to GO:0071135 * Added general dbxref CORUM:3106 to synonym ITGA7-ITGB1-PTK2 complex of GO:0071135 * Changed synonym scope of GO:0071135 from "Related" to "Narrow" * Created link GO:0071135 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071135 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071135 * [Changed name of GO:0071136 from "null" to "alpha7-beta1 integrin-laminin alpha-2 complex", Set definition of GO:0071136 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to laminin alpha-2.", Added definition dbxref PMID:17598176 to GO:0071136, Added synonym "ITGA7-ITGB1-LAMA2 complex" to GO:0071136, Added general dbxref CORUM:3105 to synonym ITGA7-ITGB1-LAMA2 complex of GO:0071136, Changed synonym scope of GO:0071136 from "Related" to "Narrow", Created link GO:0071136 -OBO_REL:is_a-> GO:0043234, Created link GO:0071136 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071136] * Changed name of GO:0071136 from "null" to "alpha7-beta1 integrin-laminin alpha-2 complex" * Set definition of GO:0071136 to "A protein complex that consists of an alpha7-beta1 integrin complex bound to laminin alpha-2." * Added definition dbxref PMID:17598176 to GO:0071136 * Added synonym "ITGA7-ITGB1-LAMA2 complex" to GO:0071136 * Added general dbxref CORUM:3105 to synonym ITGA7-ITGB1-LAMA2 complex of GO:0071136 * Changed synonym scope of GO:0071136 from "Related" to "Narrow" * Created link GO:0071136 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071136 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071136 * [Changed name of GO:0071137 from "null" to "alphaV-beta3 integrin-CD98 complex", Set definition of GO:0071137 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to the cell surface antigen CD98.", Added definition dbxref PMID:18032696 to GO:0071137, Added synonym "ITGAV-ITGB3-SLC3A2 complex" to GO:0071137, Added general dbxref CORUM:3103 to synonym ITGAV-ITGB3-SLC3A2 complex of GO:0071137, Changed synonym scope of GO:0071137 from "Related" to "Narrow", Created link GO:0071137 -OBO_REL:is_a-> GO:0044459, Created link GO:0071137 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071137] * Changed name of GO:0071137 from "null" to "alphaV-beta3 integrin-CD98 complex" * Set definition of GO:0071137 to "A protein complex that consists of an alphaV-beta3 integrin complex bound to the cell surface antigen CD98." * Added definition dbxref PMID:18032696 to GO:0071137 * Added synonym "ITGAV-ITGB3-SLC3A2 complex" to GO:0071137 * Added general dbxref CORUM:3103 to synonym ITGAV-ITGB3-SLC3A2 complex of GO:0071137 * Changed synonym scope of GO:0071137 from "Related" to "Narrow" * Created link GO:0071137 -OBO_REL:is_a-> GO:0044459 * Created link GO:0071137 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071137 * [Changed name of GO:0071138 from "null" to "alpha5-beta5-fibronectin-SFRP2 complex", Set definition of GO:0071138 to "A protein complex that consists of an alpha5-beta5 integrin complex bound to fibronectin and secreted frizzled-related protein 2.", Added definition dbxref PMID:14709558 to GO:0071138, Added synonym "ITGA5-ITGB5-FN-1-SFRP2 complex" to GO:0071138, Added general dbxref CORUM:2388 to synonym ITGA5-ITGB5-FN-1-SFRP2 complex of GO:0071138, Changed synonym scope of GO:0071138 from "Related" to "Narrow", Created link GO:0071138 -OBO_REL:is_a-> GO:0043234, Created link GO:0071138 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071138] * Changed name of GO:0071138 from "null" to "alpha5-beta5-fibronectin-SFRP2 complex" * Set definition of GO:0071138 to "A protein complex that consists of an alpha5-beta5 integrin complex bound to fibronectin and secreted frizzled-related protein 2." * Added definition dbxref PMID:14709558 to GO:0071138 * Added synonym "ITGA5-ITGB5-FN-1-SFRP2 complex" to GO:0071138 * Added general dbxref CORUM:2388 to synonym ITGA5-ITGB5-FN-1-SFRP2 complex of GO:0071138 * Changed synonym scope of GO:0071138 from "Related" to "Narrow" * Created link GO:0071138 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071138 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071138 * [Changed name of GO:0090093 from "null" to "regulation of fungal-type cell wall beta-glucan biosynthetic process", Set definition of GO:0090093 to "Any process that modulates the frequency, rate or extent of fungal-type cell wall beta-glucan biosynthesis, the chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of fungal cells.", Added definition dbxref GOC:dph to GO:0090093, Added definition dbxref GOC:tb to GO:0090093, Created link GO:0090093 -OBO_REL:is_a-> GO:0010981, Created link GO:0090093 -regulates-> GO:0070880, Assigned namespace "biological_process" to GO:0090093] * Changed name of GO:0090093 from "null" to "regulation of fungal-type cell wall beta-glucan biosynthetic process" * Set definition of GO:0090093 to "Any process that modulates the frequency, rate or extent of fungal-type cell wall beta-glucan biosynthesis, the chemical reactions and pathways resulting in the formation of beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds, found in the walls of fungal cells." * Added definition dbxref GOC:dph to GO:0090093 * Added definition dbxref GOC:tb to GO:0090093 * Created link GO:0090093 -OBO_REL:is_a-> GO:0010981 * Created link GO:0090093 -regulates-> GO:0070880 * Assigned namespace "biological_process" to GO:0090093 * [Changed name of GO:0090094 from "null" to "metanephric cap mesenchymal cell proliferation", Set definition of GO:0090094 to "The multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip.", Added definition dbxref GOC:dph to GO:0090094, Added definition dbxref GOC:tb to GO:0090094, Added definition dbxref PMID:19161241 to GO:0090094, Created link GO:0090094 -OBO_REL:is_a-> GO:0010463, Assigned namespace "biological_process" to GO:0090094] * Changed name of GO:0090094 from "null" to "metanephric cap mesenchymal cell proliferation" * Set definition of GO:0090094 to "The multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip." * Added definition dbxref GOC:dph to GO:0090094 * Added definition dbxref GOC:tb to GO:0090094 * Added definition dbxref PMID:19161241 to GO:0090094 * Created link GO:0090094 -OBO_REL:is_a-> GO:0010463 * Assigned namespace "biological_process" to GO:0090094 * [Changed name of GO:0090095 from "null" to "regulation of metanephric cap mesenchymal cell proliferation", Set definition of GO:0090095 to "Any process that modulates the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip.", Added definition dbxref GOC:dph to GO:0090095, Added definition dbxref GOC:tb to GO:0090095, Created link GO:0090095 -OBO_REL:is_a-> GO:0010464, Created link GO:0090095 -regulates-> GO:0090094, Assigned namespace "biological_process" to GO:0090095] * Changed name of GO:0090095 from "null" to "regulation of metanephric cap mesenchymal cell proliferation" * Set definition of GO:0090095 to "Any process that modulates the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip." * Added definition dbxref GOC:dph to GO:0090095 * Added definition dbxref GOC:tb to GO:0090095 * Created link GO:0090095 -OBO_REL:is_a-> GO:0010464 * Created link GO:0090095 -regulates-> GO:0090094 * Assigned namespace "biological_process" to GO:0090095 * [Changed name of GO:0090096 from "null" to "positive regulation of metanephric cap mesenchymal cell proliferation", Set definition of GO:0090096 to "Any process that increases the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip.", Added definition dbxref GOC:dph to GO:0090096, Added definition dbxref GOC:tb to GO:0090096, Created link GO:0090096 -OBO_REL:is_a-> GO:0090095, Created link GO:0090096 -positively_regulates-> GO:0090094, Created link GO:0090096 -OBO_REL:is_a-> GO:0002053, Assigned namespace "biological_process" to GO:0090096] * Changed name of GO:0090096 from "null" to "positive regulation of metanephric cap mesenchymal cell proliferation" * Set definition of GO:0090096 to "Any process that increases the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip." * Added definition dbxref GOC:dph to GO:0090096 * Added definition dbxref GOC:tb to GO:0090096 * Created link GO:0090096 -OBO_REL:is_a-> GO:0090095 * Created link GO:0090096 -positively_regulates-> GO:0090094 * Created link GO:0090096 -OBO_REL:is_a-> GO:0002053 * Assigned namespace "biological_process" to GO:0090096 * [Changed name of GO:0090097 from "null" to "regulation of decapentaplegic receptor signaling pathway", Set definition of GO:0090097 to "Any process that modulates the frequency, rate, or extent of the decapentaplegic receptor signaling pathway. The decapentaplegic receptor signaling pathway is the series of molecular signals generated as a consequence of a decapentaplegic receptor binding to one of its physiological ligands.", Added definition dbxref GOC:dph to GO:0090097, Added definition dbxref GOC:tb to GO:0090097, Created link GO:0090097 -regulates-> GO:0008101, Created link GO:0090097 -OBO_REL:is_a-> GO:0090092, Assigned namespace "biological_process" to GO:0090097] * Changed name of GO:0090097 from "null" to "regulation of decapentaplegic receptor signaling pathway" * Set definition of GO:0090097 to "Any process that modulates the frequency, rate, or extent of the decapentaplegic receptor signaling pathway. The decapentaplegic receptor signaling pathway is the series of molecular signals generated as a consequence of a decapentaplegic receptor binding to one of its physiological ligands." * Added definition dbxref GOC:dph to GO:0090097 * Added definition dbxref GOC:tb to GO:0090097 * Created link GO:0090097 -regulates-> GO:0008101 * Created link GO:0090097 -OBO_REL:is_a-> GO:0090092 * Assigned namespace "biological_process" to GO:0090097 * [Changed name of GO:0090098 from "null" to "positive regulation of decapentaplegic receptor signaling pathway", Set definition of GO:0090098 to "Any process that increases the frequency, rate, or extent of the decapentaplegic receptor signaling pathway. The decapentaplegic receptor signaling pathway is the series of molecular signals generated as a consequence of a decapentaplegic receptor binding to one of its physiological ligands.", Added definition dbxref GOC:dph to GO:0090098, Added definition dbxref GOC:tb to GO:0090098, Created link GO:0090098 -OBO_REL:is_a-> GO:0090097, Created link GO:0090098 -positively_regulates-> GO:0008101, Created link GO:0090098 -OBO_REL:is_a-> GO:0090100, Assigned namespace "biological_process" to GO:0090098] * Changed name of GO:0090098 from "null" to "positive regulation of decapentaplegic receptor signaling pathway" * Set definition of GO:0090098 to "Any process that increases the frequency, rate, or extent of the decapentaplegic receptor signaling pathway. The decapentaplegic receptor signaling pathway is the series of molecular signals generated as a consequence of a decapentaplegic receptor binding to one of its physiological ligands." * Added definition dbxref GOC:dph to GO:0090098 * Added definition dbxref GOC:tb to GO:0090098 * Created link GO:0090098 -OBO_REL:is_a-> GO:0090097 * Created link GO:0090098 -positively_regulates-> GO:0008101 * Created link GO:0090098 -OBO_REL:is_a-> GO:0090100 * Assigned namespace "biological_process" to GO:0090098 * [Changed name of GO:0090099 from "null" to "negative regulation of decapentaplegic receptor signaling pathway", Set definition of GO:0090099 to "Any process that decreases the frequency, rate, or extent of the decapentaplegic receptor signaling pathway. The decapentaplegic receptor signaling pathway is the series of molecular signals generated as a consequence of a decapentaplegic receptor binding to one of its physiological ligands.", Added definition dbxref GOC:dph to GO:0090099, Added definition dbxref GOC:tb to GO:0090099, Created link GO:0090099 -OBO_REL:is_a-> GO:0090097, Created link GO:0090099 -OBO_REL:is_a-> GO:0090101, Created link GO:0090099 -negatively_regulates-> GO:0008101, Assigned namespace "biological_process" to GO:0090099] * Changed name of GO:0090099 from "null" to "negative regulation of decapentaplegic receptor signaling pathway" * Set definition of GO:0090099 to "Any process that decreases the frequency, rate, or extent of the decapentaplegic receptor signaling pathway. The decapentaplegic receptor signaling pathway is the series of molecular signals generated as a consequence of a decapentaplegic receptor binding to one of its physiological ligands." * Added definition dbxref GOC:dph to GO:0090099 * Added definition dbxref GOC:tb to GO:0090099 * Created link GO:0090099 -OBO_REL:is_a-> GO:0090097 * Created link GO:0090099 -OBO_REL:is_a-> GO:0090101 * Created link GO:0090099 -negatively_regulates-> GO:0008101 * Assigned namespace "biological_process" to GO:0090099 * [Changed name of GO:0090100 from "null" to "positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway", Set definition of GO:0090100 to "Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.", Added definition dbxref GOC:dph to GO:0090100, Added definition dbxref GOC:tb to GO:0090100, Created link GO:0090100 -positively_regulates-> GO:0007178, Created link GO:0090100 -OBO_REL:is_a-> GO:0090092, Assigned namespace "biological_process" to GO:0090100] * Changed name of GO:0090100 from "null" to "positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway" * Set definition of GO:0090100 to "Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand." * Added definition dbxref GOC:dph to GO:0090100 * Added definition dbxref GOC:tb to GO:0090100 * Created link GO:0090100 -positively_regulates-> GO:0007178 * Created link GO:0090100 -OBO_REL:is_a-> GO:0090092 * Assigned namespace "biological_process" to GO:0090100 * [Changed name of GO:0090101 from "null" to "negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway", Set definition of GO:0090101 to "Any process that decreases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.", Added definition dbxref GOC:dph to GO:0090101, Added definition dbxref GOC:tb to GO:0090101, Created link GO:0090101 -negatively_regulates-> GO:0007178, Created link GO:0090101 -OBO_REL:is_a-> GO:0090092, Assigned namespace "biological_process" to GO:0090101] * Changed name of GO:0090101 from "null" to "negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway" * Set definition of GO:0090101 to "Any process that decreases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand." * Added definition dbxref GOC:dph to GO:0090101 * Added definition dbxref GOC:tb to GO:0090101 * Created link GO:0090101 -negatively_regulates-> GO:0007178 * Created link GO:0090101 -OBO_REL:is_a-> GO:0090092 * Assigned namespace "biological_process" to GO:0090101 * added secondary id GO:0050576 to GO:0000253 * Changed definition of GO:0000253 from "Catalysis of the reaction: 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-beta-ol + NADP+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + NADPH + H+." to "Catalysis of the reaction: a 3-beta-hydroxyl sterol + NADP+ = a 3-keto sterol + NADPH + H+." * Added definition dbxref GOC:mah to GO:0000253 * Added definition dbxref MetaCyc:1.1.1.270-RXN to GO:0000253 * Added definition dbxref MetaCyc:RXN3O-4110 to GO:0000253 * Added definition dbxref MetaCyc:RXN66-19 to GO:0000253 * Added definition dbxref MetaCyc:RXN66-24 to GO:0000253 * Added definition dbxref MetaCyc:RXN66-314 to GO:0000253 * Added definition dbxref MetaCyc:RXN66-319 to GO:0000253 * Deleted general dbxref EC:1.1.1.- from GO:0000253 * Added general dbxref EC:1.1.1.270 to GO:0000253 * Added general dbxref MetaCyc:1.1.1.270-RXN to GO:0000253 * Added general dbxref MetaCyc:RXN3O-4110 to GO:0000253 * Added general dbxref MetaCyc:RXN66-19 to GO:0000253 * Added general dbxref MetaCyc:RXN66-24 to GO:0000253 * Added general dbxref MetaCyc:RXN66-319 to GO:0000253 * Added general dbxref 3-keto-steroid reductase activity (Reactome:81247) to GO:0000253 * Added synonym "3-keto-steroid reductase activity" to GO:0000253 * Changed synonym scope of GO:0000253 from "Related" to "Exact" * Added synonym "3-KSR activity" to GO:0000253 * Added general dbxref EC:1.1.1.270 to synonym 3-KSR activity of GO:0000253 * Changed synonym scope of GO:0000253 from "Related" to "Exact" * Changed definition of GO:0003696 from "Interacting selectively and non-covalently with satellite DNA, DNA containing highly repetitive sequences which makes up a large proportion of the eukaryotic genome." to "Interacting selectively and non-covalently with satellite DNA, the many tandem repeats (identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA." * Deleted definition dbxref http://cancerweb.ncl.ac.uk/ from GO:0003696 * Added definition dbxref SO:0000005 to GO:0003696 * Created link GO:0004103 -part_of-> GO:0006657 * Created link GO:0004105 -part_of-> GO:0006657 * Created link GO:0004142 -part_of-> GO:0006657 * added secondary id GO:0004405 to GO:0004402 * added secondary id GO:0004406 to GO:0004402 * added secondary id GO:0043166 to GO:0004402 * Changed synonym scope of GO:0004402 from "Exact" to "Related" * Added synonym "H2A/H2B histone acetyltransferase activity" to GO:0004402 * Changed synonym scope of GO:0004402 from "Related" to "Narrow" * Added synonym "H3/H4 histone acetyltransferase activity" to GO:0004402 * Changed synonym scope of GO:0004402 from "Related" to "Narrow" * Added synonym "H4/H2 histone acetyltransferase activity" to GO:0004402 * Changed synonym scope of GO:0004402 from "Related" to "Narrow" * Added synonym "H4/H2A acetyltransferase activity" to GO:0004402 * Changed synonym scope of GO:0004402 from "Related" to "Narrow" * Destroyed object GO:0004405 * Destroyed object GO:0004406 * Created link GO:0006769 -OBO_REL:is_a-> GO:0006767 * Created link GO:0007340 -OBO_REL:is_a-> GO:0017156 * Deleted GO:0007531 --OBO_REL:is_a--> GO:0030154 * Created link GO:0007531 -OBO_REL:is_a-> GO:0045165 * Created link GO:0008086 -part_of-> GO:0019722 * Deleted GO:0010322 --OBO_REL:is_a--> GO:0031326 * Deleted GO:0010322 --OBO_REL:is_a--> GO:0046890 * Deleted GO:0010323 --OBO_REL:is_a--> GO:0031327 * Deleted GO:0010323 --OBO_REL:is_a--> GO:0051055 * Deleted GO:0010511 --OBO_REL:is_a--> GO:0031326 * Deleted GO:0010512 --OBO_REL:is_a--> GO:0031327 * Deleted GO:0010513 --OBO_REL:is_a--> GO:0031328 * Changed definition of GO:0010843 from "Interacting selectively and non-covalently within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery." to "Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery." * Added definition dbxref SO:0000167 to GO:0010843 * Created link GO:0010862 -OBO_REL:is_a-> GO:0090100 * Added synonym "regulation of neurite biosynthesis" to GO:0010975 * Added general dbxref GOC:mah to synonym regulation of neurite biosynthesis of GO:0010975 * Changed synonym scope of GO:0010975 from "Related" to "Narrow" * Added synonym "regulation of neurite development" to GO:0010975 * Added general dbxref GOC:mah to synonym regulation of neurite development of GO:0010975 * Changed synonym scope of GO:0010975 from "Related" to "Narrow" * Added synonym "regulation of neurite formation" to GO:0010975 * Added general dbxref GOC:mah to synonym regulation of neurite formation of GO:0010975 * Changed synonym scope of GO:0010975 from "Related" to "Narrow" * Added synonym "regulation of neurite growth" to GO:0010975 * Added general dbxref GOC:mah to synonym regulation of neurite growth of GO:0010975 * Changed synonym scope of GO:0010975 from "Related" to "Narrow" * Added synonym "positive regulation of neurite biosynthesis" to GO:0010976 * Added general dbxref GOC:mah to synonym positive regulation of neurite biosynthesis of GO:0010976 * Changed synonym scope of GO:0010976 from "Related" to "Narrow" * Added synonym "positive regulation of neurite development" to GO:0010976 * Added general dbxref GOC:mah to synonym positive regulation of neurite development of GO:0010976 * Changed synonym scope of GO:0010976 from "Related" to "Narrow" * Added synonym "positive regulation of neurite formation" to GO:0010976 * Added general dbxref GOC:mah to synonym positive regulation of neurite formation of GO:0010976 * Changed synonym scope of GO:0010976 from "Related" to "Narrow" * Added synonym "positive regulation of neurite growth" to GO:0010976 * Added general dbxref GOC:mah to synonym positive regulation of neurite growth of GO:0010976 * Changed synonym scope of GO:0010976 from "Related" to "Narrow" * Added synonym "negative regulation of neurite biosynthesis" to GO:0010977 * Added general dbxref GOC:mah to synonym negative regulation of neurite biosynthesis of GO:0010977 * Changed synonym scope of GO:0010977 from "Related" to "Narrow" * Added synonym "negative regulation of neurite development" to GO:0010977 * Added general dbxref GOC:mah to synonym negative regulation of neurite development of GO:0010977 * Changed synonym scope of GO:0010977 from "Related" to "Narrow" * Added synonym "negative regulation of neurite formation" to GO:0010977 * Added general dbxref GOC:mah to synonym negative regulation of neurite formation of GO:0010977 * Changed synonym scope of GO:0010977 from "Related" to "Narrow" * Added synonym "negative regulation of neurite growth" to GO:0010977 * Added general dbxref GOC:mah to synonym negative regulation of neurite growth of GO:0010977 * Changed synonym scope of GO:0010977 from "Related" to "Narrow" * Deleted GO:0010990 --OBO_REL:is_a--> GO:0009966 * Created link GO:0010991 -OBO_REL:is_a-> GO:0090101 * Deleted GO:0018995 --OBO_REL:is_a--> GO:0043245 * Created link GO:0018995 -OBO_REL:is_a-> GO:0044215 * Changed definition of GO:0019237 from "Interacting selectively and non-covalently with centromere-associated DNA, usually characterized by highly repetitive sequences." to "Interacting selectively and non-covalently with a centromere, a region of chromosome where the spindle fibers attach during mitosis and meiosis." * Deleted definition dbxref ISBN:0321000382 from GO:0019237 * Added definition dbxref SO:0000577 to GO:0019237 * Changed synonym scope of GO:0019237 from "Broad" to "Exact" * Deleted GO:0019362 --OBO_REL:is_a--> GO:0006767 * Deleted GO:0030277 --OBO_REL:is_a--> GO:0001894 * Created link GO:0030277 -OBO_REL:is_a-> GO:0010669 * Created link GO:0030511 -OBO_REL:is_a-> GO:0090100 * Created link GO:0030512 -OBO_REL:is_a-> GO:0090101 * Deleted GO:0030513 --OBO_REL:is_a--> GO:0030511 * Created link GO:0030513 -OBO_REL:is_a-> GO:0090100 * Deleted GO:0030514 --OBO_REL:is_a--> GO:0030512 * Created link GO:0030514 -OBO_REL:is_a-> GO:0090101 * Deleted GO:0031494 --OBO_REL:is_a--> GO:0051302 * Deleted GO:0031494 --OBO_REL:is_a--> GO:0060284 * Created link GO:0031494 -OBO_REL:is_a-> GO:0010453 * Created link GO:0031495 -OBO_REL:is_a-> GO:0010454 * Created link GO:0031496 -OBO_REL:is_a-> GO:0010455 * Created link GO:0032926 -OBO_REL:is_a-> GO:0090101 * Created link GO:0032927 -OBO_REL:is_a-> GO:0090100 * Deleted GO:0033643 --OBO_REL:is_a--> GO:0044421 * Created link GO:0033643 -OBO_REL:is_a-> GO:0044217 * Created link GO:0033644 -OBO_REL:is_a-> GO:0044218 * Changed definition of GO:0042162 from "Interacting selectively and non-covalently with telomere-associated DNA, usually characterized by highly repetitive sequences." to "Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end." * Deleted definition dbxref ISBN:0321000382 from GO:0042162 * Added definition dbxref SO:0000624 to GO:0042162 * Changed synonym scope of GO:0042162 from "Broad" to "Exact" * Changed synonym scope of GO:0042162 from "Narrow" to "Exact" * Destroyed object GO:0043166 * Deleted GO:0043657 --OBO_REL:is_a--> GO:0044421 * Created link GO:0043657 -OBO_REL:is_a-> GO:0044216 * Changed definition of GO:0044213 from "Interacting selectively and non-covalently with a regulatory element located in an intron of a gene." to "Interacting selectively and non-covalently with a kind of regulatory region that is part of an intron." * Deleted GO:0047444 --OBO_REL:is_a--> GO:0003824 * Destroyed object GO:0050576 * Created link GO:0060391 -OBO_REL:is_a-> GO:0090100 * Created link GO:0060392 -OBO_REL:is_a-> GO:0090101 * Created link GO:0060394 -OBO_REL:is_a-> GO:0090101 * Deleted GO:0060622 --OBO_REL:is_a--> GO:0010981 * Created link GO:0060622 -OBO_REL:is_a-> GO:0090093 * Deleted GO:0060729 --OBO_REL:is_a--> GO:0010669 * Created link GO:0060729 -OBO_REL:is_a-> GO:0030277 * Deleted GO:0090046 --OBO_REL:is_a--> GO:0050789 From gocvs at genome.stanford.edu Tue Nov 17 05:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 16 Nov 2009 21:30:12 -0800 Subject: [Go-diff] GO update 11/16/2009 Message-ID: <200911170530.nAH5UC9S024458@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.885 by 1.887 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0002153 * Created object of type obo:TERM with id GO:0071139 * Created object of type obo:TERM with id GO:0071140 * Created object of type obo:TERM with id GO:0071141 * Created object of type obo:TERM with id GO:0071142 * Created object of type obo:TERM with id GO:0071143 * Created object of type obo:TERM with id GO:0071144 * Created object of type obo:TERM with id GO:0071145 * Created object of type obo:TERM with id GO:0071146 * Created object of type obo:TERM with id GO:0071147 * Created object of type obo:TERM with id GO:0071148 * Created object of type obo:TERM with id GO:0071149 * Created object of type obo:TERM with id GO:0071150 * Created object of type obo:TERM with id GO:0071151 * Created object of type obo:TERM with id GO:0071152 * Created object of type obo:TERM with id GO:0071153 * Created object of type obo:TERM with id GO:0071154 * Created object of type obo:TERM with id GO:0071155 * [Changed name of GO:0002153 from "null" to "steroid receptor RNA activator RNA binding", Added comment "Note: there is also evidence that the RNA itself may code a protein (solution structure of mouse steroid receptor RNA activator 1 (SRA1) protein submitted to PDB by Riken).", Set definition of GO:0002153 to "Selectively interacting with the steroid receptor RNA activator RNA (SRA). SRA enhances steroid hormone receptor transcriptional activity as an RNA transcript by an indirect mechanism that does not involve SRA-steroid receptor binding.", Added definition dbxref PMID:10199399 to GO:0002153, Added definition dbxref PMID:15180993 to GO:0002153, Added synonym "SRA binding" to GO:0002153, Changed synonym scope of GO:0002153 from "Related" to "Exact", Created link GO:0002153 -OBO_REL:is_a-> GO:0003727, Assigned namespace "molecular_function" to GO:0002153] * Changed name of GO:0002153 from "null" to "steroid receptor RNA activator RNA binding" * Added comment "Note: there is also evidence that the RNA itself may code a protein (solution structure of mouse steroid receptor RNA activator 1 (SRA1) protein submitted to PDB by Riken)." * Set definition of GO:0002153 to "Selectively interacting with the steroid receptor RNA activator RNA (SRA). SRA enhances steroid hormone receptor transcriptional activity as an RNA transcript by an indirect mechanism that does not involve SRA-steroid receptor binding." * Added definition dbxref PMID:10199399 to GO:0002153 * Added definition dbxref PMID:15180993 to GO:0002153 * Added synonym "SRA binding" to GO:0002153 * Changed synonym scope of GO:0002153 from "Related" to "Exact" * Created link GO:0002153 -OBO_REL:is_a-> GO:0003727 * Assigned namespace "molecular_function" to GO:0002153 * [Changed name of GO:0071139 from "null" to "resolution of recombination intermediates", Set definition of GO:0071139 to "The cleavage and rejoining of intermediates, such as Holliday junctions, formed during DNA recombination to produce two intact molecules in which genetic material has been exchanged.", Added definition dbxref GOC:elh to GO:0071139, Added definition dbxref GOC:mah to GO:0071139, Added definition dbxref GOC:vw to GO:0071139, Created link GO:0071139 -OBO_REL:is_a-> GO:0051304, Created link GO:0071139 -part_of-> GO:0006310, Assigned namespace "biological_process" to GO:0071139] * Changed name of GO:0071139 from "null" to "resolution of recombination intermediates" * Set definition of GO:0071139 to "The cleavage and rejoining of intermediates, such as Holliday junctions, formed during DNA recombination to produce two intact molecules in which genetic material has been exchanged." * Added definition dbxref GOC:elh to GO:0071139 * Added definition dbxref GOC:mah to GO:0071139 * Added definition dbxref GOC:vw to GO:0071139 * Created link GO:0071139 -OBO_REL:is_a-> GO:0051304 * Created link GO:0071139 -part_of-> GO:0006310 * Assigned namespace "biological_process" to GO:0071139 * [Changed name of GO:0071140 from "null" to "resolution of mitotic recombination intermediates", Set definition of GO:0071140 to "The cleavage and rejoining of intermediates, mitotic recombination to produce two intact molecules in which genetic material has been exchanged.", Added definition dbxref GOC:elh to GO:0071140, Added definition dbxref GOC:mah to GO:0071140, Added definition dbxref GOC:vw to GO:0071140, Created link GO:0071140 -part_of-> GO:0006312, Created link GO:0071140 -OBO_REL:is_a-> GO:0071139, Assigned namespace "biological_process" to GO:0071140] * Changed name of GO:0071140 from "null" to "resolution of mitotic recombination intermediates" * Set definition of GO:0071140 to "The cleavage and rejoining of intermediates, mitotic recombination to produce two intact molecules in which genetic material has been exchanged." * Added definition dbxref GOC:elh to GO:0071140 * Added definition dbxref GOC:mah to GO:0071140 * Added definition dbxref GOC:vw to GO:0071140 * Created link GO:0071140 -part_of-> GO:0006312 * Created link GO:0071140 -OBO_REL:is_a-> GO:0071139 * Assigned namespace "biological_process" to GO:0071140 * [Changed name of GO:0071141 from "null" to "SMAD protein complex", Set definition of GO:0071141 to "A protein complex that consists of SMAD proteins; may be homomeric or heteromeric.", Added definition dbxref GOC:mah to GO:0071141, Added definition dbxref PMID:9670020 to GO:0071141, Added synonym "SMAD complex" to GO:0071141, Added general dbxref GOC:mah to synonym SMAD complex of GO:0071141, Changed synonym scope of GO:0071141 from "Related" to "Exact", Created link GO:0071141 -OBO_REL:is_a-> GO:0044424, Created link GO:0071141 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071141] * Changed name of GO:0071141 from "null" to "SMAD protein complex" * Set definition of GO:0071141 to "A protein complex that consists of SMAD proteins; may be homomeric or heteromeric." * Added definition dbxref GOC:mah to GO:0071141 * Added definition dbxref PMID:9670020 to GO:0071141 * Added synonym "SMAD complex" to GO:0071141 * Added general dbxref GOC:mah to synonym SMAD complex of GO:0071141 * Changed synonym scope of GO:0071141 from "Related" to "Exact" * Created link GO:0071141 -OBO_REL:is_a-> GO:0044424 * Created link GO:0071141 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071141 * [Changed name of GO:0071142 from "null" to "SMAD2 protein complex", Set definition of GO:0071142 to "A protein complex that consists of a SMAD2 homotrimer.", Added definition dbxref GOC:mah to GO:0071142, Added definition dbxref PMID:9670020 to GO:0071142, Added synonym "SMAD2 homotrimer complex" to GO:0071142, Added general dbxref CORUM:2999 to synonym SMAD2 homotrimer complex of GO:0071142, Changed synonym scope of GO:0071142 from "Related" to "Exact", Created link GO:0071142 -OBO_REL:is_a-> GO:0071141, Assigned namespace "cellular_component" to GO:0071142] * Changed name of GO:0071142 from "null" to "SMAD2 protein complex" * Set definition of GO:0071142 to "A protein complex that consists of a SMAD2 homotrimer." * Added definition dbxref GOC:mah to GO:0071142 * Added definition dbxref PMID:9670020 to GO:0071142 * Added synonym "SMAD2 homotrimer complex" to GO:0071142 * Added general dbxref CORUM:2999 to synonym SMAD2 homotrimer complex of GO:0071142 * Changed synonym scope of GO:0071142 from "Related" to "Exact" * Created link GO:0071142 -OBO_REL:is_a-> GO:0071141 * Assigned namespace "cellular_component" to GO:0071142 * [Changed name of GO:0071143 from "null" to "SMAD3 protein complex", Set definition of GO:0071143 to "A protein complex that consists of a SMAD3 homotrimer.", Added definition dbxref GOC:mah to GO:0071143, Added definition dbxref PMID:9670020 to GO:0071143, Added synonym "SMAD3 homotrimer complex" to GO:0071143, Added general dbxref CORUM:3003 to synonym SMAD3 homotrimer complex of GO:0071143, Changed synonym scope of GO:0071143 from "Related" to "Exact", Created link GO:0071143 -OBO_REL:is_a-> GO:0071141, Assigned namespace "cellular_component" to GO:0071143] * Changed name of GO:0071143 from "null" to "SMAD3 protein complex" * Set definition of GO:0071143 to "A protein complex that consists of a SMAD3 homotrimer." * Added definition dbxref GOC:mah to GO:0071143 * Added definition dbxref PMID:9670020 to GO:0071143 * Added synonym "SMAD3 homotrimer complex" to GO:0071143 * Added general dbxref CORUM:3003 to synonym SMAD3 homotrimer complex of GO:0071143 * Changed synonym scope of GO:0071143 from "Related" to "Exact" * Created link GO:0071143 -OBO_REL:is_a-> GO:0071141 * Assigned namespace "cellular_component" to GO:0071143 * [Changed name of GO:0071144 from "null" to "SMAD2-SMAD3 protein complex", Set definition of GO:0071144 to "A heteromeric SMAD protein complex that contains SMAD2 and SMAD3.", Added definition dbxref GOC:mah to GO:0071144, Added definition dbxref PMID:9670020 to GO:0071144, Added synonym "SMAD2-SMAD3 complex" to GO:0071144, Added general dbxref CORUM:3000 to synonym SMAD2-SMAD3 complex of GO:0071144, Changed synonym scope of GO:0071144 from "Related" to "Exact", Created link GO:0071144 -OBO_REL:is_a-> GO:0071141, Assigned namespace "cellular_component" to GO:0071144] * Changed name of GO:0071144 from "null" to "SMAD2-SMAD3 protein complex" * Set definition of GO:0071144 to "A heteromeric SMAD protein complex that contains SMAD2 and SMAD3." * Added definition dbxref GOC:mah to GO:0071144 * Added definition dbxref PMID:9670020 to GO:0071144 * Added synonym "SMAD2-SMAD3 complex" to GO:0071144 * Added general dbxref CORUM:3000 to synonym SMAD2-SMAD3 complex of GO:0071144 * Changed synonym scope of GO:0071144 from "Related" to "Exact" * Created link GO:0071144 -OBO_REL:is_a-> GO:0071141 * Assigned namespace "cellular_component" to GO:0071144 * [Changed name of GO:0071145 from "null" to "SMAD2-SMAD4 protein complex", Set definition of GO:0071145 to "A heteromeric SMAD protein complex that contains SMAD2 and SMAD4.", Added definition dbxref GOC:mah to GO:0071145, Added definition dbxref PMID:9670020 to GO:0071145, Added synonym "SMAD2-SMAD4 heteromer complex" to GO:0071145, Added general dbxref CORUM:3001 to synonym SMAD2-SMAD4 heteromer complex of GO:0071145, Changed synonym scope of GO:0071145 from "Related" to "Exact", Created link GO:0071145 -OBO_REL:is_a-> GO:0071141, Assigned namespace "cellular_component" to GO:0071145] * Changed name of GO:0071145 from "null" to "SMAD2-SMAD4 protein complex" * Set definition of GO:0071145 to "A heteromeric SMAD protein complex that contains SMAD2 and SMAD4." * Added definition dbxref GOC:mah to GO:0071145 * Added definition dbxref PMID:9670020 to GO:0071145 * Added synonym "SMAD2-SMAD4 heteromer complex" to GO:0071145 * Added general dbxref CORUM:3001 to synonym SMAD2-SMAD4 heteromer complex of GO:0071145 * Changed synonym scope of GO:0071145 from "Related" to "Exact" * Created link GO:0071145 -OBO_REL:is_a-> GO:0071141 * Assigned namespace "cellular_component" to GO:0071145 * [Changed name of GO:0071146 from "null" to "SMAD3-SMAD4 protein complex", Set definition of GO:0071146 to "A heteromeric SMAD protein complex that contains SMAD3 and SMAD4.", Added definition dbxref GOC:mah to GO:0071146, Added definition dbxref PMID:9670020 to GO:0071146, Added synonym "SMAD3-SMAD4 complex" to GO:0071146, Added general dbxref CORUM:3002 to synonym SMAD3-SMAD4 complex of GO:0071146, Changed synonym scope of GO:0071146 from "Related" to "Exact", Created link GO:0071146 -OBO_REL:is_a-> GO:0071141, Assigned namespace "cellular_component" to GO:0071146] * Changed name of GO:0071146 from "null" to "SMAD3-SMAD4 protein complex" * Set definition of GO:0071146 to "A heteromeric SMAD protein complex that contains SMAD3 and SMAD4." * Added definition dbxref GOC:mah to GO:0071146 * Added definition dbxref PMID:9670020 to GO:0071146 * Added synonym "SMAD3-SMAD4 complex" to GO:0071146 * Added general dbxref CORUM:3002 to synonym SMAD3-SMAD4 complex of GO:0071146 * Changed synonym scope of GO:0071146 from "Related" to "Exact" * Created link GO:0071146 -OBO_REL:is_a-> GO:0071141 * Assigned namespace "cellular_component" to GO:0071146 * [Changed name of GO:0071147 from "null" to "TEAD-2 multiprotein complex", Set definition of GO:0071147 to "A protein complex that consists of the DNA binding protein TEAD-2 bound to 12 other polypeptides including the transcriptional coactivator YAP, the multi-PDZ domain protein MPDZ (also called MUPP1), a 14-3-3 domain protein, and others.", Added definition dbxref CORUM:2870 to GO:0071147, Added definition dbxref GOC:mah to GO:0071147, Added definition dbxref PMID:11358867 to GO:0071147, Created link GO:0071147 -OBO_REL:is_a-> GO:0043234, Created link GO:0071147 -OBO_REL:is_a-> GO:0044424, Assigned namespace "cellular_component" to GO:0071147] * Changed name of GO:0071147 from "null" to "TEAD-2 multiprotein complex" * Set definition of GO:0071147 to "A protein complex that consists of the DNA binding protein TEAD-2 bound to 12 other polypeptides including the transcriptional coactivator YAP, the multi-PDZ domain protein MPDZ (also called MUPP1), a 14-3-3 domain protein, and others." * Added definition dbxref CORUM:2870 to GO:0071147 * Added definition dbxref GOC:mah to GO:0071147 * Added definition dbxref PMID:11358867 to GO:0071147 * Created link GO:0071147 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071147 -OBO_REL:is_a-> GO:0044424 * Assigned namespace "cellular_component" to GO:0071147 * [Changed name of GO:0071148 from "null" to "TEAD-1-YAP complex", Set definition of GO:0071148 to "A transcription factor complex that is composed of the DNA biding protein TEAD-1 and the transcriptional coactivator YAP.", Added definition dbxref GOC:mah to GO:0071148, Added definition dbxref PMID:11358867 to GO:0071148, Created link GO:0071148 -OBO_REL:is_a-> GO:0005667, Assigned namespace "cellular_component" to GO:0071148] * Changed name of GO:0071148 from "null" to "TEAD-1-YAP complex" * Set definition of GO:0071148 to "A transcription factor complex that is composed of the DNA biding protein TEAD-1 and the transcriptional coactivator YAP." * Added definition dbxref GOC:mah to GO:0071148 * Added definition dbxref PMID:11358867 to GO:0071148 * Created link GO:0071148 -OBO_REL:is_a-> GO:0005667 * Assigned namespace "cellular_component" to GO:0071148 * [Changed name of GO:0071149 from "null" to "TEAD-2-YAP complex", Set definition of GO:0071149 to "A transcription factor complex that is composed of the DNA biding protein TEAD-2 and the transcriptional coactivator YAP.", Added definition dbxref GOC:mah to GO:0071149, Added definition dbxref PMID:11358867 to GO:0071149, Created link GO:0071149 -OBO_REL:is_a-> GO:0005667, Assigned namespace "cellular_component" to GO:0071149] * Changed name of GO:0071149 from "null" to "TEAD-2-YAP complex" * Set definition of GO:0071149 to "A transcription factor complex that is composed of the DNA biding protein TEAD-2 and the transcriptional coactivator YAP." * Added definition dbxref GOC:mah to GO:0071149 * Added definition dbxref PMID:11358867 to GO:0071149 * Created link GO:0071149 -OBO_REL:is_a-> GO:0005667 * Assigned namespace "cellular_component" to GO:0071149 * [Changed name of GO:0071150 from "null" to "TEAD-3-YAP complex", Set definition of GO:0071150 to "A transcription factor complex that is composed of the DNA biding protein TEAD-3 and the transcriptional coactivator YAP.", Added definition dbxref GOC:mah to GO:0071150, Added definition dbxref PMID:11358867 to GO:0071150, Created link GO:0071150 -OBO_REL:is_a-> GO:0005667, Assigned namespace "cellular_component" to GO:0071150] * Changed name of GO:0071150 from "null" to "TEAD-3-YAP complex" * Set definition of GO:0071150 to "A transcription factor complex that is composed of the DNA biding protein TEAD-3 and the transcriptional coactivator YAP." * Added definition dbxref GOC:mah to GO:0071150 * Added definition dbxref PMID:11358867 to GO:0071150 * Created link GO:0071150 -OBO_REL:is_a-> GO:0005667 * Assigned namespace "cellular_component" to GO:0071150 * [Changed name of GO:0071151 from "null" to "TEAD-4-YAP complex", Set definition of GO:0071151 to "A transcription factor complex that is composed of the DNA biding protein TEAD-4 and the transcriptional coactivator YAP.", Added definition dbxref GOC:mah to GO:0071151, Added definition dbxref PMID:11358867 to GO:0071151, Created link GO:0071151 -OBO_REL:is_a-> GO:0005667, Assigned namespace "cellular_component" to GO:0071151] * Changed name of GO:0071151 from "null" to "TEAD-4-YAP complex" * Set definition of GO:0071151 to "A transcription factor complex that is composed of the DNA biding protein TEAD-4 and the transcriptional coactivator YAP." * Added definition dbxref GOC:mah to GO:0071151 * Added definition dbxref PMID:11358867 to GO:0071151 * Created link GO:0071151 -OBO_REL:is_a-> GO:0005667 * Assigned namespace "cellular_component" to GO:0071151 * [Changed name of GO:0071152 from "null" to "G-protein alpha(q)-synembrin complex", Set definition of GO:0071152 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(q) subunit of a heterotrimeric G protein.", Added definition dbxref GOC:mah to GO:0071152, Added definition dbxref PMID:12509430 to GO:0071152, Added synonym "Ric-8A G(q) alpha subunit complex" to GO:0071152, Added general dbxref CORUM:175 to synonym Ric-8A G(q) alpha subunit complex of GO:0071152, Changed synonym scope of GO:0071152 from "Related" to "Narrow", Created link GO:0071152 -OBO_REL:is_a-> GO:0044424, Created link GO:0071152 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071152] * Changed name of GO:0071152 from "null" to "G-protein alpha(q)-synembrin complex" * Set definition of GO:0071152 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(q) subunit of a heterotrimeric G protein." * Added definition dbxref GOC:mah to GO:0071152 * Added definition dbxref PMID:12509430 to GO:0071152 * Added synonym "Ric-8A G(q) alpha subunit complex" to GO:0071152 * Added general dbxref CORUM:175 to synonym Ric-8A G(q) alpha subunit complex of GO:0071152 * Changed synonym scope of GO:0071152 from "Related" to "Narrow" * Created link GO:0071152 -OBO_REL:is_a-> GO:0044424 * Created link GO:0071152 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071152 * [Changed name of GO:0071153 from "null" to "G-protein alpha(o)-synembrin complex", Set definition of GO:0071153 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(o) subunit of a heterotrimeric G protein.", Added definition dbxref GOC:mah to GO:0071153, Added definition dbxref PMID:12509430 to GO:0071153, Added synonym "Ric-8A G(o) alpha-1 subunit complex" to GO:0071153, Added general dbxref CORUM:172 to synonym Ric-8A G(o) alpha-1 subunit complex of GO:0071153, Changed synonym scope of GO:0071153 from "Related" to "Narrow", Added synonym "Ric-8A G(o) alpha-2 subunit complex" to GO:0071153, Added general dbxref CORUM:174 to synonym Ric-8A G(o) alpha-2 subunit complex of GO:0071153, Changed synonym scope of GO:0071153 from "Related" to "Narrow", Created link GO:0071153 -OBO_REL:is_a-> GO:0044424, Created link GO:0071153 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071153] * Changed name of GO:0071153 from "null" to "G-protein alpha(o)-synembrin complex" * Set definition of GO:0071153 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(o) subunit of a heterotrimeric G protein." * Added definition dbxref GOC:mah to GO:0071153 * Added definition dbxref PMID:12509430 to GO:0071153 * Added synonym "Ric-8A G(o) alpha-1 subunit complex" to GO:0071153 * Added general dbxref CORUM:172 to synonym Ric-8A G(o) alpha-1 subunit complex of GO:0071153 * Changed synonym scope of GO:0071153 from "Related" to "Narrow" * Added synonym "Ric-8A G(o) alpha-2 subunit complex" to GO:0071153 * Added general dbxref CORUM:174 to synonym Ric-8A G(o) alpha-2 subunit complex of GO:0071153 * Changed synonym scope of GO:0071153 from "Related" to "Narrow" * Created link GO:0071153 -OBO_REL:is_a-> GO:0044424 * Created link GO:0071153 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071153 * [Changed name of GO:0071154 from "null" to "G-protein alpha(i)1-synembrin complex", Set definition of GO:0071154 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(i)1 subunit of a heterotrimeric G protein.", Added definition dbxref GOC:mah to GO:0071154, Added definition dbxref PMID:12509430 to GO:0071154, Added synonym "Ric-8A G(i) alpha-1 subunit complex" to GO:0071154, Added general dbxref CORUM:170 to synonym Ric-8A G(i) alpha-1 subunit complex of GO:0071154, Changed synonym scope of GO:0071154 from "Related" to "Narrow", Added synonym "Ric-8A G(i) alpha-2 subunit complex" to GO:0071154, Added general dbxref CORUM:171 to synonym Ric-8A G(i) alpha-2 subunit complex of GO:0071154, Created link GO:0071154 -OBO_REL:is_a-> GO:0044424, Created link GO:0071154 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071154] * Changed name of GO:0071154 from "null" to "G-protein alpha(i)1-synembrin complex" * Set definition of GO:0071154 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(i)1 subunit of a heterotrimeric G protein." * Added definition dbxref GOC:mah to GO:0071154 * Added definition dbxref PMID:12509430 to GO:0071154 * Added synonym "Ric-8A G(i) alpha-1 subunit complex" to GO:0071154 * Added general dbxref CORUM:170 to synonym Ric-8A G(i) alpha-1 subunit complex of GO:0071154 * Changed synonym scope of GO:0071154 from "Related" to "Narrow" * Added synonym "Ric-8A G(i) alpha-2 subunit complex" to GO:0071154 * Added general dbxref CORUM:171 to synonym Ric-8A G(i) alpha-2 subunit complex of GO:0071154 * Created link GO:0071154 -OBO_REL:is_a-> GO:0044424 * Created link GO:0071154 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071154 * [Changed name of GO:0071155 from "null" to "G-protein alpha(13)-synembrin complex", Set definition of GO:0071155 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(13) subunit of a heterotrimeric G protein.", Added definition dbxref GOC:mah to GO:0071155, Added definition dbxref PMID:12509430 to GO:0071155, Added synonym "Ric-8A G alpha 13 subunit complex" to GO:0071155, Added general dbxref CORUM:176 to synonym Ric-8A G alpha 13 subunit complex of GO:0071155, Changed synonym scope of GO:0071155 from "Related" to "Narrow", Created link GO:0071155 -OBO_REL:is_a-> GO:0044424, Created link GO:0071155 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071155] * Changed name of GO:0071155 from "null" to "G-protein alpha(13)-synembrin complex" * Set definition of GO:0071155 to "A protein complex formed by the association of the guanine nucleotide exchange factor synembrin with the alpha(13) subunit of a heterotrimeric G protein." * Added definition dbxref GOC:mah to GO:0071155 * Added definition dbxref PMID:12509430 to GO:0071155 * Added synonym "Ric-8A G alpha 13 subunit complex" to GO:0071155 * Added general dbxref CORUM:176 to synonym Ric-8A G alpha 13 subunit complex of GO:0071155 * Changed synonym scope of GO:0071155 from "Related" to "Narrow" * Created link GO:0071155 -OBO_REL:is_a-> GO:0044424 * Created link GO:0071155 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071155 * Changed name of GO:0000712 from "resolution of meiotic joint molecules as recombinants" to "resolution of meiotic recombination intermediates" * Changed definition of GO:0000712 from "The cleavage and rejoining of Holliday junctions formed during meiotic recombination to produce two intact molecules in which genetic material has been exchanged." to "The cleavage and rejoining of intermediates, such as Holliday junctions, formed during meiotic recombination to produce two intact molecules in which genetic material has been exchanged." * Added synonym "resolution of meiotic joint molecules as recombinants" to GO:0000712 * Added general dbxref GOC:mah to synonym resolution of meiotic joint molecules as recombinants of GO:0000712 * Added general dbxref GOC:elh to synonym resolution of meiotic joint molecules as recombinants of GO:0000712 * Changed synonym scope of GO:0000712 from "Related" to "Narrow" * Added general dbxref PMID:9670020 to synonym SMAD protein heteromerization of GO:0007183 * Added general dbxref GOC:mah to synonym SMAD protein heteromerization of GO:0007183 * Changed synonym scope of GO:0007183 from "Exact" to "Narrow" * Changed definition of GO:0090095 from "Any process that modulates the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip." to "Any process that modulates the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip." * Changed definition of GO:0090096 from "Any process that increases the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip." to "Any process that increases the frequency, rate, or extent of metanephric cap mesenchymal cell proliferation. Metanephric cap mesenchymal cell proliferation is the multiplication or reproduction of metanephric cap mesenchymal cells, resulting in the expansion of the cell population. A metanephric cap mesenchymal cell is a mesenchymal cell that has condensed with other mesenchymal cells surrounding the ureteric bud tip." From gocvs at genome.stanford.edu Wed Nov 18 05:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 17 Nov 2009 21:30:13 -0800 Subject: [Go-diff] GO update 11/17/2009 Message-ID: <200911180530.nAI5UDxd024217@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.887 by 1.889 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0044225 * Created object of type obo:TERM with id GO:0044226 * Created object of type obo:TERM with id GO:0071156 * Created object of type obo:TERM with id GO:0071157 * Created object of type obo:TERM with id GO:0071158 * Created object of type obo:TERM with id GO:0071159 * Created object of type obo:TERM with id GO:0071160 * Created object of type obo:TERM with id GO:0071161 * [Changed name of GO:0044225 from "null" to "apical pole of neuron", Set definition of GO:0044225 to "Portion of a neuron cell soma closest to the point where the apical dendrite emerges.", Added definition dbxref NIFSTD:sao1186862860 to GO:0044225, Created link GO:0044225 -OBO_REL:is_a-> GO:0060187, Created link GO:0044225 -part_of-> GO:0043025, Assigned namespace "cellular_component" to GO:0044225] * Changed name of GO:0044225 from "null" to "apical pole of neuron" * Set definition of GO:0044225 to "Portion of a neuron cell soma closest to the point where the apical dendrite emerges." * Added definition dbxref NIFSTD:sao1186862860 to GO:0044225 * Created link GO:0044225 -OBO_REL:is_a-> GO:0060187 * Created link GO:0044225 -part_of-> GO:0043025 * Assigned namespace "cellular_component" to GO:0044225 * [Changed name of GO:0044226 from "null" to "basal pole of neuron", Set definition of GO:0044226 to "Portion of a neuron cell soma closest to the point where the basilar dendrite emerges.", Added definition dbxref NIFSTD:sao1186862860 to GO:0044226, Created link GO:0044226 -OBO_REL:is_a-> GO:0060187, Created link GO:0044226 -part_of-> GO:0043025, Assigned namespace "cellular_component" to GO:0044226] * Changed name of GO:0044226 from "null" to "basal pole of neuron" * Set definition of GO:0044226 to "Portion of a neuron cell soma closest to the point where the basilar dendrite emerges." * Added definition dbxref NIFSTD:sao1186862860 to GO:0044226 * Created link GO:0044226 -OBO_REL:is_a-> GO:0060187 * Created link GO:0044226 -part_of-> GO:0043025 * Assigned namespace "cellular_component" to GO:0044226 * [Changed name of GO:0071156 from "null" to "regulation of cell cycle arrest", Set definition of GO:0071156 to "Any process that modulates the rate, frequency, or extent of cell cycle arrest, the process by which the cell cycle is halted during one of the normal phases.", Added definition dbxref GOC:mah to GO:0071156, Created link GO:0071156 -OBO_REL:is_a-> GO:0010564, Created link GO:0071156 -regulates-> GO:0007050, Assigned namespace "biological_process" to GO:0071156] * Changed name of GO:0071156 from "null" to "regulation of cell cycle arrest" * Set definition of GO:0071156 to "Any process that modulates the rate, frequency, or extent of cell cycle arrest, the process by which the cell cycle is halted during one of the normal phases." * Added definition dbxref GOC:mah to GO:0071156 * Created link GO:0071156 -OBO_REL:is_a-> GO:0010564 * Created link GO:0071156 -regulates-> GO:0007050 * Assigned namespace "biological_process" to GO:0071156 * [Changed name of GO:0071157 from "null" to "negative regulation of cell cycle arrest", Set definition of GO:0071157 to "Any process that decreases the rate, frequency, or extent of cell cycle arrest, the process by which the cell cycle is halted during one of the normal phases.", Added definition dbxref GOC:mah to GO:0071157, Created link GO:0071157 -OBO_REL:is_a-> GO:0071156, Created link GO:0071157 -OBO_REL:is_a-> GO:0010948, Created link GO:0071157 -negatively_regulates-> GO:0007050, Assigned namespace "biological_process" to GO:0071157] * Changed name of GO:0071157 from "null" to "negative regulation of cell cycle arrest" * Set definition of GO:0071157 to "Any process that decreases the rate, frequency, or extent of cell cycle arrest, the process by which the cell cycle is halted during one of the normal phases." * Added definition dbxref GOC:mah to GO:0071157 * Created link GO:0071157 -OBO_REL:is_a-> GO:0071156 * Created link GO:0071157 -OBO_REL:is_a-> GO:0010948 * Created link GO:0071157 -negatively_regulates-> GO:0007050 * Assigned namespace "biological_process" to GO:0071157 * [Changed name of GO:0071158 from "null" to "positive regulation of cell cycle arrest", Set definition of GO:0071158 to "Any process that increases the rate, frequency, or extent of cell cycle arrest, the process by which the cell cycle is halted during one of the normal phases.", Added definition dbxref GOC:mah to GO:0071158, Created link GO:0071158 -OBO_REL:is_a-> GO:0071156, Created link GO:0071158 -positively_regulates-> GO:0007050, Created link GO:0071158 -OBO_REL:is_a-> GO:0090068, Assigned namespace "biological_process" to GO:0071158] * Changed name of GO:0071158 from "null" to "positive regulation of cell cycle arrest" * Set definition of GO:0071158 to "Any process that increases the rate, frequency, or extent of cell cycle arrest, the process by which the cell cycle is halted during one of the normal phases." * Added definition dbxref GOC:mah to GO:0071158 * Created link GO:0071158 -OBO_REL:is_a-> GO:0071156 * Created link GO:0071158 -positively_regulates-> GO:0007050 * Created link GO:0071158 -OBO_REL:is_a-> GO:0090068 * Assigned namespace "biological_process" to GO:0071158 * [Changed name of GO:0071159 from "null" to "NF-kappaB complex", Set definition of GO:0071159 to "A protein complex that consists of a homo- or heterodimer of members of a family of structurally related proteins that contain a conserved N-terminal region called the Rel homology domain (RHD). In the nucleus, NF-kappaB complexes act as transcription factors. In unstimulated cells, NF-kappaB dimers are sequestered in the cytoplasm by IkappaB monomers; signals that induce NF-kappaB activity cause degradation of IkappaB, allowing NF-kappaB dimers to translocate to the nucleus and induce gene expression.", Added definition dbxref ISBN:0849327946 to GO:0071159, Created link GO:0071159 -OBO_REL:is_a-> GO:0043234, Created link GO:0071159 -OBO_REL:is_a-> GO:0044424, Assigned namespace "cellular_component" to GO:0071159] * Changed name of GO:0071159 from "null" to "NF-kappaB complex" * Set definition of GO:0071159 to "A protein complex that consists of a homo- or heterodimer of members of a family of structurally related proteins that contain a conserved N-terminal region called the Rel homology domain (RHD). In the nucleus, NF-kappaB complexes act as transcription factors. In unstimulated cells, NF-kappaB dimers are sequestered in the cytoplasm by IkappaB monomers; signals that induce NF-kappaB activity cause degradation of IkappaB, allowing NF-kappaB dimers to translocate to the nucleus and induce gene expression." * Added definition dbxref ISBN:0849327946 to GO:0071159 * Created link GO:0071159 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071159 -OBO_REL:is_a-> GO:0044424 * Assigned namespace "cellular_component" to GO:0071159 * [Changed name of GO:0071160 from "null" to "cyanophycin synthetase activity (L-aspartate-adding)", Set definition of GO:0071160 to "Catalysis of the reaction: ATP + [L-Asp(4-L-Arg)]n + L-Asp = ADP + phosphate + [L-Asp(4-L-Arg)]n-L-Asp.", Added definition dbxref EC:6.3.2.29 to GO:0071160, Added general dbxref EC:6.3.1.29 to GO:0071160, Added GO:0071160 to category gosubset_prok, Created link GO:0071160 -OBO_REL:is_a-> GO:0043860, Assigned namespace "molecular_function" to GO:0071160] * Changed name of GO:0071160 from "null" to "cyanophycin synthetase activity (L-aspartate-adding)" * Set definition of GO:0071160 to "Catalysis of the reaction: ATP + [L-Asp(4-L-Arg)]n + L-Asp = ADP + phosphate + [L-Asp(4-L-Arg)]n-L-Asp." * Added definition dbxref EC:6.3.2.29 to GO:0071160 * Added general dbxref EC:6.3.1.29 to GO:0071160 * Added GO:0071160 to category gosubset_prok * Created link GO:0071160 -OBO_REL:is_a-> GO:0043860 * Assigned namespace "molecular_function" to GO:0071160 * [Changed name of GO:0071161 from "null" to "cyanophycin synthetase activity (L-arginine-adding)", Set definition of GO:0071161 to "Catalysis of the reaction: ATP + [L-Asp(4-L-Arg)]n-L-Asp + L-Arg = ADP + phosphate + [L-Asp(4-L-Arg)]n+1.", Added definition dbxref EC:6.3.2.30 to GO:0071161, Added general dbxref EC:6.3.1.30 to GO:0071161, Added GO:0071161 to category gosubset_prok, Created link GO:0071161 -OBO_REL:is_a-> GO:0043860, Assigned namespace "molecular_function" to GO:0071161] * Changed name of GO:0071161 from "null" to "cyanophycin synthetase activity (L-arginine-adding)" * Set definition of GO:0071161 to "Catalysis of the reaction: ATP + [L-Asp(4-L-Arg)]n-L-Asp + L-Arg = ADP + phosphate + [L-Asp(4-L-Arg)]n+1." * Added definition dbxref EC:6.3.2.30 to GO:0071161 * Added general dbxref EC:6.3.1.30 to GO:0071161 * Added GO:0071161 to category gosubset_prok * Created link GO:0071161 -OBO_REL:is_a-> GO:0043860 * Assigned namespace "molecular_function" to GO:0071161 * Deleted definition dbxref UniProtKB:P32352 from GO:0000247 * Added definition dbxref MetaCyc:RXN3O-203 to GO:0000247 * Added definition dbxref PMID:8988026 to GO:0000247 * Deleted definition dbxref UniProtKB:P54781 from GO:0000249 * Deleted definition dbxref UniProtKB:P13483 from GO:0003680 * Added definition dbxref PMID:2670564 to GO:0003680 * Deleted definition dbxref UniProtKB:P24721 from GO:0004873 * Added definition dbxref PMID:11278827 to GO:0004873 * Deleted definition dbxref UniProtKB:P70414 from GO:0005432 * Added definition dbxref GOC:curators to GO:0005432 * Added definition dbxref PMID:16371597 to GO:0005432 * Changed definition of GO:0005870 from "A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, nucleates the polymerization of actin monomers but does not sever actin filaments, and which is a part of the dynactin complex." to "A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, nucleates the polymerization of actin monomers but does not sever actin filaments, and which is a part of the dynactin complex." * Deleted definition dbxref UniProtKB:P14315 from GO:0005870 * Added definition dbxref PMID:18221362 to GO:0005870 * Added definition dbxref PMID:18544499 to GO:0005870 * Deleted definition dbxref UniProtKB:P37252 from GO:0005948 * Added definition dbxref PMID:16458324 to GO:0005948 * Added definition dbxref PMID:8756689 to GO:0005948 * Deleted definition dbxref UniProtKB:Q12572 from GO:0005949 * Deleted definition dbxref UniProtKB:P09785 from GO:0005950 * Added definition dbxref MetaCyc:ANTHRANSYN-CPLX to GO:0005950 * Added definition dbxref PMID:4886290 to GO:0005950 * Deleted definition dbxref UniProtKB:P53609 from GO:0005953 * Deleted definition dbxref UniProtKB:Q9UQM7 from GO:0005954 * Added synonym "positive regulation of cell cycle arrest by p53-mediated DNA damage response" to GO:0006977 * Added general dbxref GOC:mah to synonym positive regulation of cell cycle arrest by p53-mediated DNA damage response of GO:0006977 * Added general dbxref GOC:dph to synonym positive regulation of cell cycle arrest by p53-mediated DNA damage response of GO:0006977 * Changed synonym scope of GO:0006977 from "Related" to "Exact" * Created link GO:0006977 -OBO_REL:is_a-> GO:0071158 * Deleted definition dbxref UniProtKB:Q28017 from GO:0008247 * Changed definition of GO:0008290 from "A heterodimer consisting of alpha and a beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments." to "A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments." * Deleted definition dbxref UniProtKB:P37108 from GO:0008312 * Added definition dbxref PMID:6181418 to GO:0008312 * Deleted definition dbxref UniProtKB:Q8TW31 from GO:0009316 * Added definition dbxref MetaCyc:3-ISOPROPYLMALISOM-CPLX to GO:0009316 * Added definition dbxref PMID:7026530 to GO:0009316 * Added general dbxref MetaCyc:3-ISOPROPYLMALISOM-CPLX to GO:0009316 * Deleted definition dbxref UniProtKB:P24182 from GO:0009317 * Added definition dbxref PMID:12121720 to GO:0009317 * Deleted definition dbxref UniProtKB:P0A0B5 from GO:0009321 * Added definition dbxref PMID:2649484 to GO:0009321 * Deleted definition dbxref UniProtKB:P08193 from GO:0009329 * Added definition dbxref PMID:2719476 to GO:0009329 * Added definition dbxref PMID:8423010 to GO:0009329 * Deleted definition dbxref UniProtKB:P77650 from GO:0009334 * Added definition dbxref MetaCyc:HCAMULTI-CPLX to GO:0009334 * Added definition dbxref PMID:9603882 to GO:0009334 * Added general dbxref MetaCyc:HCAMULTI-CPLX to GO:0009334 * Deleted definition dbxref UniProtKB:P06864 from GO:0009341 * Added definition dbxref PMID:15950161 to GO:0009341 * Created link GO:0010503 -OBO_REL:is_a-> GO:0071157 * Deleted GO:0010504 --OBO_REL:is_a--> GO:0010564 * Created link GO:0010504 -OBO_REL:is_a-> GO:0071156 * Created link GO:0010505 -OBO_REL:is_a-> GO:0071158 * Deleted definition dbxref UniProtKB:P30533 from GO:0016963 * Added definition dbxref GOC:curators to GO:0016963 * Deleted definition dbxref UniProtKB:P39749 from GO:0017108 * Deleted definition dbxref UniProtKB:Q46978 from GO:0018800 * Deleted definition dbxref Oxford Dictionary of Biochemistry and Molecular Biology (ISBN:0198506732) from GO:0030089 * Added definition dbxref GOC:jl to GO:0030089 * Added definition dbxref http://en.wikipedia.org/wiki/Phycobilisome to GO:0030089 * Added definition dbxref PMID:11734882 to GO:0030089 * Deleted GO:0030089 --OBO_REL:is_a--> GO:0044433 * Deleted GO:0030089 --OBO_REL:is_a--> GO:0044435 * Deleted GO:0030089 --part_of--> GO:0009843 * Deleted GO:0030089 --part_of--> GO:0030075 * Deleted GO:0030089 --OBO_REL:is_a--> GO:0044459 * Created link GO:0030089 -part_of-> GO:0042651 * Added synonym "internode" to GO:0033269 * Changed synonym scope of GO:0033269 from "Related" to "Exact" * Deleted definition dbxref UniProtKB:Q6BE24 from GO:0034076 * Added comment "Note that 'error-free' does not mean that literally zero errors occur during DNA synthesis, but that the error rate is low, comparable to that of DNA synthesis during replication." * Added synonym "neuron process" to GO:0043005 * Changed synonym scope of GO:0043005 from "Related" to "Exact" * Deleted definition dbxref UniProtKB:Q81MJ2 from GO:0043715 * Added definition dbxref MetaCyc:R82-RXN to GO:0043715 * Deleted definition dbxref UniProtKB:O31667 from GO:0043716 * Added definition dbxref MetaCyc:R83-RXN to GO:0043716 * Added general dbxref MetaCyc:R83-RXN to GO:0043716 * Added synonym "2-hydroxy-3-keto-5-methylthio-phosphopentene phosphatase activity" to GO:0043716 * Added general dbxref MetaCyc:R83-RXN to synonym 2-hydroxy-3-keto-5-methylthio-phosphopentene phosphatase activity of GO:0043716 * Changed synonym scope of GO:0043716 from "Related" to "Exact" * Deleted definition dbxref UniProtKB:P11569 from GO:0043717 * Added definition dbxref MetaCyc:RXN-1083 to GO:0043717 * Added general dbxref MetaCyc:RXN-1083 to GO:0043717 * Changed definition of GO:0043719 from "Catalysis of the introduction of a hydroxyl group at carbon five of 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol to form 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol." to "Catalysis of the reaction: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol +O2 + H+ = 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol + H2O." * Deleted definition dbxref UniProtKB:P75728 from GO:0043719 * Added definition dbxref MetaCyc:OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN to GO:0043719 * Deleted definition dbxref UniProtKB:Q58178 from GO:0043773 * Added definition dbxref PMID:17669425 to GO:0043773 * Deleted definition dbxref UniProtKB:Q05590 from GO:0043782 * Deleted definition dbxref UniProtKB:P58572 from GO:0043860 * Added definition dbxref EC:6.3.2.29 to GO:0043860 * Added definition dbxref EC:6.3.2.30 to GO:0043860 * Deleted general dbxref EC:6.-.-.- from GO:0043860 * Added general dbxref EC:6.3.1.- to GO:0043860 * Deleted GO:0043860 --OBO_REL:is_a--> GO:0016874 * Created link GO:0043860 -OBO_REL:is_a-> GO:0016881 * Deleted definition dbxref UniProtKB:Q46983 from GO:0043863 * Deleted definition dbxref UniProtKB:Q9YAC2 from GO:0043867 * Added definition dbxref PMID:7748953 to GO:0043867 * Deleted definition dbxref UniProtKB:A1B8U5 from GO:0043880 * Deleted definition dbxref UniProtKB:mf from GO:0044099 * Added definition dbxref GOC:mf to GO:0044099 * Deleted definition dbxref UniProtKB:mf from GO:0044100 * Added definition dbxref GOC:mf to GO:0044100 * Deleted definition dbxref UniProtKB:lb from GO:0044154 * Added definition dbxref GOC:lb to GO:0044154 * Deleted definition dbxref UniProtKB:rh from GO:0044155 * Added definition dbxref GOC:rph to GO:0044155 * Deleted definition dbxref UniProtKB:rh from GO:0044156 * Added definition dbxref GOC:rph to GO:0044156 * Deleted definition dbxref UniProtKB:rh from GO:0044157 * Added definition dbxref GOC:rph to GO:0044157 * Deleted definition dbxref UniProtKB:rh from GO:0044158 * Added definition dbxref GOC:rph to GO:0044158 * Deleted definition dbxref UniProtKB:rh from GO:0044159 * Added definition dbxref GOC:rph to GO:0044159 * Deleted definition dbxref UniProtKB:rh from GO:0044160 * Added definition dbxref GOC:rph to GO:0044160 * Deleted definition dbxref UniProtKB:rh from GO:0044161 * Added definition dbxref GOC:rph to GO:0044161 * Deleted definition dbxref UniProtKB:rh from GO:0044162 * Added definition dbxref GOC:rph to GO:0044162 * Deleted definition dbxref UniProtKB:rh from GO:0044163 * Added definition dbxref GOC:rph to GO:0044163 * Added comment "This term was made obsolete because 'error-prone' does not correspond to a repair mechanism, and the term has been superseded by more specific terms." * Changed definition of GO:0045020 from "DNA repair pathways that tend to increase the endogenous mutation rate." to "OBSOLETE. DNA repair pathways that tend to increase the endogenous mutation rate." * Removed GO:0045020 from category gosubset_prok * Deleted GO:0045020 --OBO_REL:is_a--> GO:0006281 * org.obo.history.ObsoleteObjectHistoryItem at 22e74bb4 * Adding consider replacement GO:0042276 to GO:0045020 * Added comment "This term was made obsolete because 'error-free' does not correspond to a repair mechanism, and the term has been superseded by more specific terms." * Changed definition of GO:0045021 from "DNA repair pathways that do not increase the mutation rate above spontaneous background levels, e.g. excision and recombination pathways." to "OBSOLETE. DNA repair pathways that do not increase the mutation rate above spontaneous background levels, e.g. excision and recombination pathways." * Deleted GO:0045021 --OBO_REL:is_a--> GO:0006281 * org.obo.history.ObsoleteObjectHistoryItem at 7f1b2852 * Adding consider replacement GO:0042275 to GO:0045021 * Adding consider replacement GO:0070987 to GO:0045021 * Added comment "Note that 'error-free' does not mean that literally zero errors occur during DNA synthesis, but that the error rate is low, comparable to that of DNA synthesis during replication." From gocvs at genome.stanford.edu Thu Nov 19 05:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 18 Nov 2009 21:30:12 -0800 Subject: [Go-diff] GO update 11/18/2009 Message-ID: <200911190530.nAJ5UCAv004579@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.889 by 1.891 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0090102 * Created object of type obo:TERM with id GO:0090103 * Created object of type obo:TERM with id GO:0090104 * Created object of type obo:TERM with id GO:0090105 * Created object of type obo:TERM with id GO:0090106 * [Changed name of GO:0090102 from "null" to "cochlea development", Set definition of GO:0090102 to "The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound.", Added definition dbxref GOC:dph to GO:0090102, Added definition dbxref GOC:tb to GO:0090102, Created link GO:0090102 -part_of-> GO:0048839, Created link GO:0090102 -OBO_REL:is_a-> GO:0048856, Assigned namespace "biological_process" to GO:0090102] * Changed name of GO:0090102 from "null" to "cochlea development" * Set definition of GO:0090102 to "The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound." * Added definition dbxref GOC:dph to GO:0090102 * Added definition dbxref GOC:tb to GO:0090102 * Created link GO:0090102 -part_of-> GO:0048839 * Created link GO:0090102 -OBO_REL:is_a-> GO:0048856 * Assigned namespace "biological_process" to GO:0090102 * [Changed name of GO:0090103 from "null" to "cochlea morphogenesis", Set definition of GO:0090103 to "The process by which the cochlea is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:dph to GO:0090103, Added definition dbxref GOC:tb to GO:0090103, Created link GO:0090103 -OBO_REL:is_a-> GO:0009653, Created link GO:0090103 -part_of-> GO:0090102, Created link GO:0090103 -part_of-> GO:0042472, Assigned namespace "biological_process" to GO:0090103] * Changed name of GO:0090103 from "null" to "cochlea morphogenesis" * Set definition of GO:0090103 to "The process by which the cochlea is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:dph to GO:0090103 * Added definition dbxref GOC:tb to GO:0090103 * Created link GO:0090103 -OBO_REL:is_a-> GO:0009653 * Created link GO:0090103 -part_of-> GO:0090102 * Created link GO:0090103 -part_of-> GO:0042472 * Assigned namespace "biological_process" to GO:0090103 * [Changed name of GO:0090104 from "null" to "pancreatic E cell differentiation", Set definition of GO:0090104 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features of a pancreatic E cell. A pancreatic E cell is a cell in the pancreas that secretes ghrelin.", Added definition dbxref GOC:dph to GO:0090104, Added definition dbxref GOC:tb to GO:0090104, Created link GO:0090104 -part_of-> GO:0031018, Created link GO:0090104 -OBO_REL:is_a-> GO:0030154, Assigned namespace "biological_process" to GO:0090104] * Changed name of GO:0090104 from "null" to "pancreatic E cell differentiation" * Set definition of GO:0090104 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features of a pancreatic E cell. A pancreatic E cell is a cell in the pancreas that secretes ghrelin." * Added definition dbxref GOC:dph to GO:0090104 * Added definition dbxref GOC:tb to GO:0090104 * Created link GO:0090104 -part_of-> GO:0031018 * Created link GO:0090104 -OBO_REL:is_a-> GO:0030154 * Assigned namespace "biological_process" to GO:0090104 * [Changed name of GO:0090105 from "null" to "pancreatic E cell development", Set definition of GO:0090105 to "The process whose specific outcome is the progression of a pancreatic E cell over time, from its formation to the mature structure.", Added definition dbxref GOC:dph to GO:0090105, Added definition dbxref GOC:tb to GO:0090105, Created link GO:0090105 -part_of-> GO:0090104, Created link GO:0090105 -OBO_REL:is_a-> GO:0048468, Assigned namespace "biological_process" to GO:0090105] * Changed name of GO:0090105 from "null" to "pancreatic E cell development" * Set definition of GO:0090105 to "The process whose specific outcome is the progression of a pancreatic E cell over time, from its formation to the mature structure." * Added definition dbxref GOC:dph to GO:0090105 * Added definition dbxref GOC:tb to GO:0090105 * Created link GO:0090105 -part_of-> GO:0090104 * Created link GO:0090105 -OBO_REL:is_a-> GO:0048468 * Assigned namespace "biological_process" to GO:0090105 * [Changed name of GO:0090106 from "null" to "pancreatic E cell fate commitment", Set definition of GO:0090106 to "The commitment of a cell to a pancreatic E cell fate and its capacity to differentiate into a pancreatic E cell.", Added definition dbxref GOC:dph to GO:0090106, Added definition dbxref GOC:tb to GO:0090106, Created link GO:0090106 -part_of-> GO:0090104, Created link GO:0090106 -OBO_REL:is_a-> GO:0045165, Assigned namespace "biological_process" to GO:0090106] * Changed name of GO:0090106 from "null" to "pancreatic E cell fate commitment" * Set definition of GO:0090106 to "The commitment of a cell to a pancreatic E cell fate and its capacity to differentiate into a pancreatic E cell." * Added definition dbxref GOC:dph to GO:0090106 * Added definition dbxref GOC:tb to GO:0090106 * Created link GO:0090106 -part_of-> GO:0090104 * Created link GO:0090106 -OBO_REL:is_a-> GO:0045165 * Assigned namespace "biological_process" to GO:0090106 * added secondary id GO:0043790 to GO:0000179 * Added synonym "18S rRNA dimethylase activity" to GO:0000179 * Changed synonym scope of GO:0000179 from "Related" to "Exact" * Added synonym "dimethyladenosine transferase activity" to GO:0000179 * Added general dbxref IMG:02532 to synonym dimethyladenosine transferase activity of GO:0000179 * Changed synonym scope of GO:0000179 from "Related" to "Exact" * Added synonym "S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase activity" to GO:0000179 * Added general dbxref IMG:02532 to synonym S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase activity of GO:0000179 * Changed synonym scope of GO:0000179 from "Related" to "Exact" * Created link GO:0000179 -OBO_REL:is_a-> GO:0008168 * Created link GO:0005244 -part_of-> GO:0034765 * Created link GO:0005245 -part_of-> GO:0051925 * Created link GO:0005262 -OBO_REL:is_a-> GO:0070588 * Deleted definition dbxref UniProtKB:P35249 from GO:0005660 * Deleted definition dbxref UniProtKB:P24534 from GO:0005853 * Deleted GO:0007026 --OBO_REL:is_a--> GO:0032269 * Deleted GO:0008064 --OBO_REL:is_a--> GO:0032268 * Created link GO:0008095 -part_of-> GO:0007165 * Created link GO:0008308 -part_of-> GO:0044070 * Changed definition of GO:0009319 from "A bacterial heterooctameric enzyme composed of two A chains, two B chains, two C chains and two D chains. Possesses cytochrome o ubiquinol oxidase activity." to "A protein complex that possesses cytochrome o ubiquinol oxidase activity; consists of four polypeptide subunits and associated prosthetic groups." * Deleted definition dbxref GOC:jl from GO:0009319 * Deleted definition dbxref UniProtKB:P0ABJ3 from GO:0009319 * Added definition dbxref GOC:mah to GO:0009319 * Added definition dbxref MetaCyc:CYT-O-UBIOX-CPLX to GO:0009319 * Added definition dbxref PMID:11017202 to GO:0009319 * Added definition dbxref PMID:3052268 to GO:0009319 * Added general dbxref MetaCyc:CYT-O-UBIOX-CPLX to GO:0009319 * Changed definition of GO:0009340 from "A heterodimeric enzyme, which in most bacterial species is composed of two subunits, PARC and PARE. Functions in chromosome segregation and can relax supercoiled DNA." to "A heterodimeric enzyme, which in most bacterial species is composed of two subunits, ParC and ParE. Functions in chromosome segregation and can relax supercoiled DNA." * Deleted definition dbxref UniProtKB:Q45066 from GO:0009340 * Added definition dbxref PMID:7783632 to GO:0009340 * Deleted definition dbxref UniProtKB:Q60597 from GO:0009353 * Added definition dbxref MetaCyc:CPLX66-42 to GO:0009353 * Added definition dbxref PMID:10848975 to GO:0009353 * Deleted definition dbxref UniProtKB:P15048 from GO:0009366 * Added definition dbxref MetaCyc:ENTMULTI-CPLX to GO:0009366 * Added definition dbxref PMID:9485415 to GO:0009366 * Added general dbxref MetaCyc:ENTMULTI-CPLX to GO:0009366 * Created link GO:0009850 -OBO_REL:is_a-> GO:0044237 * Created link GO:0009851 -OBO_REL:is_a-> GO:0044249 * Deleted GO:0010559 --OBO_REL:is_a--> GO:0051246 * Deleted definition dbxref UniProtKB:P41110 from GO:0016281 * Added definition dbxref PMID:8449919 to GO:0016281 * Changed name of GO:0016533 from "cyclin-dependent protein kinase 5 activator complex" to "cyclin-dependent protein kinase 5 holoenzyme complex" * Deleted definition dbxref UniProtKB:Q62938 from GO:0016533 * Added definition dbxref PMID:15689152 to GO:0016533 * Deleted GO:0016533 --OBO_REL:is_a--> GO:0043234 * Created link GO:0016533 -OBO_REL:is_a-> GO:0000307 * Changed definition of GO:0016600 from "A heteromeric complex of flotillin 1, flotillin 2, caveolin 1 and caveolin 2 within the caveolar membrane." to "A protein complex that contains flotillin-1 and flotillin-2, and may contain associated proteins. Flotillins associate into membrane microdomains resembling caveolae." * Deleted definition dbxref UniProtKB:O61491 from GO:0016600 * Added definition dbxref PMID:17206938 to GO:0016600 * Added definition dbxref PMID:17600709 to GO:0016600 * Deleted definition dbxref UniProtKB:Q9JIA7 from GO:0017050 * Added definition dbxref MetaCyc:RXN3DJ-11417 to GO:0017050 * Added general dbxref MetaCyc:RXN3DJ-11417 to GO:0017050 * Deleted definition dbxref UniProtKB:P35816 from GO:0019910 * Added definition dbxref PMID:9395502 to GO:0019910 * Created link GO:0022832 -part_of-> GO:0051049 * Created link GO:0022832 -part_of-> GO:0055085 * Changed definition of GO:0030337 from "An accessory subunit of DNA polymerase that acts to increase the processivity of polymerization." to "An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it." * Deleted definition dbxref UniProtKB:P28958 from GO:0030337 * Added definition dbxref GOC:mah to GO:0030337 * Added definition dbxref PMID:7903401 to GO:0030337 * Added definition dbxref PMID:8087839 to GO:0030337 * Deleted GO:0030835 --OBO_REL:is_a--> GO:0032269 * Deleted GO:0030836 --OBO_REL:is_a--> GO:0032270 * Deleted GO:0030842 --OBO_REL:is_a--> GO:0032268 * Deleted GO:0030843 --OBO_REL:is_a--> GO:0032269 * Deleted GO:0030844 --OBO_REL:is_a--> GO:0032270 * Deleted GO:0030856 --OBO_REL:is_a--> GO:0022603 * Deleted GO:0031114 --OBO_REL:is_a--> GO:0032268 * Deleted GO:0031117 --OBO_REL:is_a--> GO:0032270 * Deleted GO:0031279 --OBO_REL:is_a--> GO:0030802 * Deleted GO:0031345 --OBO_REL:is_a--> GO:0051093 * Deleted GO:0031346 --OBO_REL:is_a--> GO:0051094 * Deleted GO:0032272 --OBO_REL:is_a--> GO:0032269 * Deleted GO:0032273 --OBO_REL:is_a--> GO:0032270 * Deleted definition dbxref UniProtKB:Q9VKX7 from GO:0042281 * Added definition dbxref MetaCyc:RXN-5470 to GO:0042281 * Deleted definition dbxref UniProtKB:Q9W3V8 from GO:0042283 * Added definition dbxref MetaCyc:RXN-5471 to GO:0042283 * Added definition dbxref PMID:12480927 to GO:0042283 * Deleted definition dbxref UniProtKB:P05050 from GO:0043734 * Added definition dbxref PMID:19786499 to GO:0043734 * Destroyed object GO:0043790 * Deleted definition dbxref UniProtKB:O93661 from GO:0043791 * Changed definition of GO:0043848 from "Catalyzes the incision of the DNA at the 3' side of a lesion." to "Catalysis of the incision of damaged DNA on the 3' side of a lesion, typically at the ninth phosphodiester bond 3' of the damage." * Deleted definition dbxref UniProtKB:P59439 from GO:0043848 * Added definition dbxref PMID:11818552 to GO:0043848 * Deleted definition dbxref UniProtKB:P58562 from GO:0043859 * Deleted definition dbxref UniProtKB:A2SCK2 from GO:0043876 * Added definition dbxref MetaCyc:4.1.2.42-RXN to GO:0043876 * Created link GO:0044106 -OBO_REL:is_a-> GO:0034641 * Deleted definition dbxref UniProtKB:Q60597 from GO:0045248 * Added definition dbxref PMID:10848975 to GO:0045248 * Deleted definition dbxref UniProtKB:P35816 from GO:0045249 * Added definition dbxref PMID:9395502 to GO:0045249 * Deleted definition dbxref UniProtKB:Q60597 from GO:0045252 * Added definition dbxref MetaCyc:CPLX66-42 to GO:0045252 * Added definition dbxref PMID:10848975 to GO:0045252 * Deleted definition dbxref UniProtKB:P35816 from GO:0045253 * Added definition dbxref PMID:9395502 to GO:0045253 * Deleted GO:0045604 --OBO_REL:is_a--> GO:0022603 From gocvs at genome.stanford.edu Fri Nov 20 05:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 19 Nov 2009 21:30:13 -0800 Subject: [Go-diff] GO update 11/19/2009 Message-ID: <200911200530.nAK5UDFR030676@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.891 by 1.894 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0002154 * Created object of type obo:TERM with id GO:0002155 * Created object of type obo:TERM with id GO:0002156 * Created object of type obo:TERM with id GO:0002157 * Created object of type obo:TERM with id GO:0044227 * Created object of type obo:TERM with id GO:0071162 * Created object of type obo:TERM with id GO:0071163 * Created object of type obo:TERM with id GO:0071164 * Created object of type obo:TERM with id GO:0071165 * Created object of type obo:TERM with id GO:0071166 * Created object of type obo:TERM with id GO:0071167 * [Changed name of GO:0002154 from "null" to "thyroid hormone mediated signaling pathway", Set definition of GO:0002154 to "A series of molecular signals mediated by the detection of a thyroid hormone.", Added definition dbxref GOC:hjd to GO:0002154, Created link GO:0002154 -OBO_REL:is_a-> GO:0009755, Assigned namespace "biological_process" to GO:0002154] * Changed name of GO:0002154 from "null" to "thyroid hormone mediated signaling pathway" * Set definition of GO:0002154 to "A series of molecular signals mediated by the detection of a thyroid hormone." * Added definition dbxref GOC:hjd to GO:0002154 * Created link GO:0002154 -OBO_REL:is_a-> GO:0009755 * Assigned namespace "biological_process" to GO:0002154 * [Changed name of GO:0002155 from "null" to "regulation of thyroid hormone mediated signaling pathway", Set definition of GO:0002155 to "Any process that modulates the frequency, rate or extent of a thyroid hormone mediated signaling pathway.", Added definition dbxref GOC:hjd to GO:0002155, Created link GO:0002155 -regulates-> GO:0002154, Created link GO:0002155 -OBO_REL:is_a-> GO:0009966, Created link GO:0002155 -OBO_REL:is_a-> GO:0048583, Assigned namespace "biological_process" to GO:0002155] * Changed name of GO:0002155 from "null" to "regulation of thyroid hormone mediated signaling pathway" * Set definition of GO:0002155 to "Any process that modulates the frequency, rate or extent of a thyroid hormone mediated signaling pathway." * Added definition dbxref GOC:hjd to GO:0002155 * Created link GO:0002155 -regulates-> GO:0002154 * Created link GO:0002155 -OBO_REL:is_a-> GO:0009966 * Created link GO:0002155 -OBO_REL:is_a-> GO:0048583 * Assigned namespace "biological_process" to GO:0002155 * [Changed name of GO:0002156 from "null" to "negative regulation of thyroid hormone mediated signaling pathway", Set definition of GO:0002156 to "Any process that stops, prevents or reduces the frequency, rate or extent of thyroid hormone mediated signaling pathway.", Added definition dbxref GOC:hjd to GO:0002156, Created link GO:0002156 -OBO_REL:is_a-> GO:0002155, Created link GO:0002156 -OBO_REL:is_a-> GO:0051241, Created link GO:0002156 -negatively_regulates-> GO:0002154, Created link GO:0002156 -OBO_REL:is_a-> GO:0009968, Assigned namespace "biological_process" to GO:0002156] * Changed name of GO:0002156 from "null" to "negative regulation of thyroid hormone mediated signaling pathway" * Set definition of GO:0002156 to "Any process that stops, prevents or reduces the frequency, rate or extent of thyroid hormone mediated signaling pathway." * Added definition dbxref GOC:hjd to GO:0002156 * Created link GO:0002156 -OBO_REL:is_a-> GO:0002155 * Created link GO:0002156 -OBO_REL:is_a-> GO:0051241 * Created link GO:0002156 -negatively_regulates-> GO:0002154 * Created link GO:0002156 -OBO_REL:is_a-> GO:0009968 * Assigned namespace "biological_process" to GO:0002156 * [Changed name of GO:0002157 from "null" to "positive regulation of thyroid hormone mediated signaling pathway", Set definition of GO:0002157 to "Any process that increases the frequency, rate or extent of thyroid hormone mediated signaling pathway.", Added definition dbxref GOC:hjd to GO:0002157, Created link GO:0002157 -OBO_REL:is_a-> GO:0048584, Created link GO:0002157 -positively_regulates-> GO:0002154, Created link GO:0002157 -OBO_REL:is_a-> GO:0009967, Created link GO:0002157 -OBO_REL:is_a-> GO:0002155, Assigned namespace "biological_process" to GO:0002157] * Changed name of GO:0002157 from "null" to "positive regulation of thyroid hormone mediated signaling pathway" * Set definition of GO:0002157 to "Any process that increases the frequency, rate or extent of thyroid hormone mediated signaling pathway." * Added definition dbxref GOC:hjd to GO:0002157 * Created link GO:0002157 -OBO_REL:is_a-> GO:0048584 * Created link GO:0002157 -positively_regulates-> GO:0002154 * Created link GO:0002157 -OBO_REL:is_a-> GO:0009967 * Created link GO:0002157 -OBO_REL:is_a-> GO:0002155 * Assigned namespace "biological_process" to GO:0002157 * [Changed name of GO:0044227 from "null" to "methane-oxidizing organelle", Set definition of GO:0044227 to "The cytoplasmic, a membrane-bound compartment found within Methanotrophic bacteria with enzymes and electron transfer proteins for methane catabolism. This structure is analogous to the thylakoid of Cyanobactera and the anammoxosome of anaerobic ammonium oxidation organisms.", Added definition dbxref GOC:dh to GO:0044227, Added GO:0044227 to category gosubset_prok, Added synonym "methane-oxidizing compartment" to GO:0044227, Changed synonym scope of GO:0044227 from "Related" to "Exact", Added synonym "methanotroph intracytoplasmic membrane-bound compartment" to GO:0044227, Changed synonym scope of GO:0044227 from "Related" to "Exact", Created link GO:0044227 -OBO_REL:is_a-> GO:0044444, Created link GO:0044227 -OBO_REL:is_a-> GO:0043231, Assigned namespace "cellular_component" to GO:0044227] * Changed name of GO:0044227 from "null" to "methane-oxidizing organelle" * Set definition of GO:0044227 to "The cytoplasmic, a membrane-bound compartment found within Methanotrophic bacteria with enzymes and electron transfer proteins for methane catabolism. This structure is analogous to the thylakoid of Cyanobactera and the anammoxosome of anaerobic ammonium oxidation organisms." * Added definition dbxref GOC:dh to GO:0044227 * Added GO:0044227 to category gosubset_prok * Added synonym "methane-oxidizing compartment" to GO:0044227 * Changed synonym scope of GO:0044227 from "Related" to "Exact" * Added synonym "methanotroph intracytoplasmic membrane-bound compartment" to GO:0044227 * Changed synonym scope of GO:0044227 from "Related" to "Exact" * Created link GO:0044227 -OBO_REL:is_a-> GO:0044444 * Created link GO:0044227 -OBO_REL:is_a-> GO:0043231 * Assigned namespace "cellular_component" to GO:0044227 * [Changed name of GO:0071162 from "null" to "CMG complex", Set definition of GO:0071162 to "A protein complex that contains the GINS complex, Cdc45p, and the heterohexameric MCM complex, and that is involved in unwinding DNA during replication.", Added definition dbxref PMID:19228417 to GO:0071162, Added synonym "unwindosome" to GO:0071162, Added general dbxref PMID:19228417 to synonym unwindosome of GO:0071162, Changed synonym scope of GO:0071162 from "Related" to "Exact", Created link GO:0071162 -has_part-> GO:0000811, Created link GO:0071162 -OBO_REL:is_a-> GO:0044451, Created link GO:0071162 -OBO_REL:is_a-> GO:0044454, Created link GO:0071162 -OBO_REL:is_a-> GO:0043234, Created link GO:0071162 -has_part-> GO:0042555, Assigned namespace "cellular_component" to GO:0071162] * Changed name of GO:0071162 from "null" to "CMG complex" * Set definition of GO:0071162 to "A protein complex that contains the GINS complex, Cdc45p, and the heterohexameric MCM complex, and that is involved in unwinding DNA during replication." * Added definition dbxref PMID:19228417 to GO:0071162 * Added synonym "unwindosome" to GO:0071162 * Added general dbxref PMID:19228417 to synonym unwindosome of GO:0071162 * Changed synonym scope of GO:0071162 from "Related" to "Exact" * Created link GO:0071162 -has_part-> GO:0000811 * Created link GO:0071162 -OBO_REL:is_a-> GO:0044451 * Created link GO:0071162 -OBO_REL:is_a-> GO:0044454 * Created link GO:0071162 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071162 -has_part-> GO:0042555 * Assigned namespace "cellular_component" to GO:0071162 * [Changed name of GO:0071163 from "null" to "DNA replication preinitiation complex assembly", Set definition of GO:0071163 to "The aggregation, arrangement and bonding together of a set of components to form the DNA replication preinitiation complex, a protein-DNA complex that is assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication, by the assembly of additional proteins onto an existing prereplicative complex", Added definition dbxref GOC:mah to GO:0071163, Added synonym "DNA replication preinitiation complex formation" to GO:0071163, Added general dbxref GOC:mah to synonym DNA replication preinitiation complex formation of GO:0071163, Changed synonym scope of GO:0071163 from "Related" to "Exact", Created link GO:0071163 -part_of-> GO:0006261, Created link GO:0071163 -OBO_REL:is_a-> GO:0065004, Assigned namespace "biological_process" to GO:0071163] * Changed name of GO:0071163 from "null" to "DNA replication preinitiation complex assembly" * Set definition of GO:0071163 to "The aggregation, arrangement and bonding together of a set of components to form the DNA replication preinitiation complex, a protein-DNA complex that is assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication, by the assembly of additional proteins onto an existing prereplicative complex" * Added definition dbxref GOC:mah to GO:0071163 * Added synonym "DNA replication preinitiation complex formation" to GO:0071163 * Added general dbxref GOC:mah to synonym DNA replication preinitiation complex formation of GO:0071163 * Changed synonym scope of GO:0071163 from "Related" to "Exact" * Created link GO:0071163 -part_of-> GO:0006261 * Created link GO:0071163 -OBO_REL:is_a-> GO:0065004 * Assigned namespace "biological_process" to GO:0071163 * [Changed name of GO:0071164 from "null" to "RNA trimethylguanosine synthase activity", Set definition of GO:0071164 to "Catalysis of two successive methyl transfer reactions from AdoMet to the N-2 atom of guanosine, thereby converting 7-methylguanosine in an RNA cap to 2,2,7 trimethylguanosine.", Added definition dbxref PMID:11983179 to GO:0071164, Added definition dbxref PMID:18775984 to GO:0071164, Added synonym "cap hypermethylase activity" to GO:0071164, Added general dbxref PMID:11983179 to synonym cap hypermethylase activity of GO:0071164, Changed synonym scope of GO:0071164 from "Related" to "Exact", Added synonym "small nuclear RNA methyltransferase activity" to GO:0071164, Added general dbxref GOC:rl to synonym small nuclear RNA methyltransferase activity of GO:0071164, Added synonym "snRNA methyltransferase activity" to GO:0071164, Added general dbxref GOC:rl to synonym snRNA methyltransferase activity of GO:0071164, Created link GO:0071164 -OBO_REL:is_a-> GO:0008173, Assigned namespace "molecular_function" to GO:0071164] * Changed name of GO:0071164 from "null" to "RNA trimethylguanosine synthase activity" * Set definition of GO:0071164 to "Catalysis of two successive methyl transfer reactions from AdoMet to the N-2 atom of guanosine, thereby converting 7-methylguanosine in an RNA cap to 2,2,7 trimethylguanosine." * Added definition dbxref PMID:11983179 to GO:0071164 * Added definition dbxref PMID:18775984 to GO:0071164 * Added synonym "cap hypermethylase activity" to GO:0071164 * Added general dbxref PMID:11983179 to synonym cap hypermethylase activity of GO:0071164 * Changed synonym scope of GO:0071164 from "Related" to "Exact" * Added synonym "small nuclear RNA methyltransferase activity" to GO:0071164 * Added general dbxref GOC:rl to synonym small nuclear RNA methyltransferase activity of GO:0071164 * Added synonym "snRNA methyltransferase activity" to GO:0071164 * Added general dbxref GOC:rl to synonym snRNA methyltransferase activity of GO:0071164 * Created link GO:0071164 -OBO_REL:is_a-> GO:0008173 * Assigned namespace "molecular_function" to GO:0071164 * [Changed name of GO:0071165 from "null" to "GINS complex assembly", Set definition of GO:0071165 to "The aggregation, arrangement and bonding together of a set of components to form a GINS complex, a heterotetrameric protein complex that associates with DNA replication origins and replication forks.", Added definition dbxref GOC:mah to GO:0071165, Added definition dbxref PMID:16990792 to GO:0071165, Created link GO:0071165 -OBO_REL:is_a-> GO:0043623, Assigned namespace "biological_process" to GO:0071165] * Changed name of GO:0071165 from "null" to "GINS complex assembly" * Set definition of GO:0071165 to "The aggregation, arrangement and bonding together of a set of components to form a GINS complex, a heterotetrameric protein complex that associates with DNA replication origins and replication forks." * Added definition dbxref GOC:mah to GO:0071165 * Added definition dbxref PMID:16990792 to GO:0071165 * Created link GO:0071165 -OBO_REL:is_a-> GO:0043623 * Assigned namespace "biological_process" to GO:0071165 * [Changed name of GO:0071166 from "null" to "ribonucleoprotein complex localization", Set definition of GO:0071166 to "Any process by which a ribonucleoprotein complex is transported to, or maintained in, a specific location within a cell.", Added definition dbxref GOC:mah to GO:0071166, Added synonym "cellular ribonucleoprotein complex localization" to GO:0071166, Added general dbxref GOC:mah to synonym cellular ribonucleoprotein complex localization of GO:0071166, Changed synonym scope of GO:0071166 from "Related" to "Exact", Added synonym "establishment and maintenance of ribonucleoprotein complex localization" to GO:0071166, Added general dbxref GOC:mah to synonym establishment and maintenance of ribonucleoprotein complex localization of GO:0071166, Changed synonym scope of GO:0071166 from "Related" to "Exact", Added synonym "RNP localization" to GO:0071166, Added general dbxref GOC:mah to synonym RNP localization of GO:0071166, Changed synonym scope of GO:0071166 from "Related" to "Exact", Created link GO:0071166 -OBO_REL:is_a-> GO:0051641, Assigned namespace "biological_process" to GO:0071166] * Changed name of GO:0071166 from "null" to "ribonucleoprotein complex localization" * Set definition of GO:0071166 to "Any process by which a ribonucleoprotein complex is transported to, or maintained in, a specific location within a cell." * Added definition dbxref GOC:mah to GO:0071166 * Added synonym "cellular ribonucleoprotein complex localization" to GO:0071166 * Added general dbxref GOC:mah to synonym cellular ribonucleoprotein complex localization of GO:0071166 * Changed synonym scope of GO:0071166 from "Related" to "Exact" * Added synonym "establishment and maintenance of ribonucleoprotein complex localization" to GO:0071166 * Added general dbxref GOC:mah to synonym establishment and maintenance of ribonucleoprotein complex localization of GO:0071166 * Changed synonym scope of GO:0071166 from "Related" to "Exact" * Added synonym "RNP localization" to GO:0071166 * Added general dbxref GOC:mah to synonym RNP localization of GO:0071166 * Changed synonym scope of GO:0071166 from "Related" to "Exact" * Created link GO:0071166 -OBO_REL:is_a-> GO:0051641 * Assigned namespace "biological_process" to GO:0071166 * [Changed name of GO:0071167 from "null" to "ribonucleoprotein complex import into nucleus", Set definition of GO:0071167 to "The directed movement of a ribonucleoprotein complex from the cytoplasm to the nucleus.", Added definition dbxref GOC:mah to GO:0071167, Added synonym "ribonucleoprotein complex import into cell nucleus" to GO:0071167, Added general dbxref GOC:mah to synonym ribonucleoprotein complex import into cell nucleus of GO:0071167, Changed synonym scope of GO:0071167 from "Related" to "Exact", Added synonym "ribonucleoprotein complex nucleus import" to GO:0071167, Added general dbxref GOC:mah to synonym ribonucleoprotein complex nucleus import of GO:0071167, Changed synonym scope of GO:0071167 from "Related" to "Exact", Added synonym "ribonucleoprotein complex targeting to nucleus" to GO:0071167, Added general dbxref GOC:mah to synonym ribonucleoprotein complex targeting to nucleus of GO:0071167, Changed synonym scope of GO:0071167 from "Related" to "Exact", Added synonym "ribonucleoprotein complex transport from cytoplasm to nucleus" to GO:0071167, Added general dbxref GOC:mah to synonym ribonucleoprotein complex transport from cytoplasm to nucleus of GO:0071167, Changed synonym scope of GO:0071167 from "Related" to "Exact", Added synonym "ribonucleoprotein import into nucleus" to GO:0071167, Added general dbxref GOC:rl to synonym ribonucleoprotein import into nucleus of GO:0071167, Changed synonym scope of GO:0071167 from "Related" to "Exact", Added synonym "RNP import into nucleus" to GO:0071167, Added general dbxref GOC:mah to synonym RNP import into nucleus of GO:0071167, Changed synonym scope of GO:0071167 from "Related" to "Exact", Created link GO:0071167 -OBO_REL:is_a-> GO:0051170, Created link GO:0071167 -OBO_REL:is_a-> GO:0071166, Assigned namespace "biological_process" to GO:0071167] * Changed name of GO:0071167 from "null" to "ribonucleoprotein complex import into nucleus" * Set definition of GO:0071167 to "The directed movement of a ribonucleoprotein complex from the cytoplasm to the nucleus." * Added definition dbxref GOC:mah to GO:0071167 * Added synonym "ribonucleoprotein complex import into cell nucleus" to GO:0071167 * Added general dbxref GOC:mah to synonym ribonucleoprotein complex import into cell nucleus of GO:0071167 * Changed synonym scope of GO:0071167 from "Related" to "Exact" * Added synonym "ribonucleoprotein complex nucleus import" to GO:0071167 * Added general dbxref GOC:mah to synonym ribonucleoprotein complex nucleus import of GO:0071167 * Changed synonym scope of GO:0071167 from "Related" to "Exact" * Added synonym "ribonucleoprotein complex targeting to nucleus" to GO:0071167 * Added general dbxref GOC:mah to synonym ribonucleoprotein complex targeting to nucleus of GO:0071167 * Changed synonym scope of GO:0071167 from "Related" to "Exact" * Added synonym "ribonucleoprotein complex transport from cytoplasm to nucleus" to GO:0071167 * Added general dbxref GOC:mah to synonym ribonucleoprotein complex transport from cytoplasm to nucleus of GO:0071167 * Changed synonym scope of GO:0071167 from "Related" to "Exact" * Added synonym "ribonucleoprotein import into nucleus" to GO:0071167 * Added general dbxref GOC:rl to synonym ribonucleoprotein import into nucleus of GO:0071167 * Changed synonym scope of GO:0071167 from "Related" to "Exact" * Added synonym "RNP import into nucleus" to GO:0071167 * Added general dbxref GOC:mah to synonym RNP import into nucleus of GO:0071167 * Changed synonym scope of GO:0071167 from "Related" to "Exact" * Created link GO:0071167 -OBO_REL:is_a-> GO:0051170 * Created link GO:0071167 -OBO_REL:is_a-> GO:0071166 * Assigned namespace "biological_process" to GO:0071167 * Changed definition of GO:0000811 from "A multisubunit complex that associates with replication origins and is required for the initiation of DNA replication." to "A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks." * Added definition dbxref PMID:16990792 to GO:0000811 * Added definition dbxref PMID:17467990 to GO:0000811 * Deleted GO:0005262 --OBO_REL:is_a--> GO:0070588 * Created link GO:0005262 -part_of-> GO:0070588 * Changed definition of GO:0005656 from "A multiprotein complex assembled at eukaryotic DNA replication origins during late mitosis and G1, allowing the origin to become competent, or 'licensed', for replication. The complex normally includes the origin recognition complex (ORC), Cdc6, Cdt1 and the MiniChromosome Maintenance (Mcm2-7) proteins." to "A protein-DNA complex assembled at eukaryotic DNA replication origins during late mitosis and G1, allowing the origin to become competent, or 'licensed', for replication. The complex normally includes the origin recognition complex (ORC), Cdc6, Cdt1 and the MiniChromosome Maintenance (Mcm2-7) proteins." * Created link GO:0005656 -has_part-> GO:0042555 * Created link GO:0005656 -has_part-> GO:0000808 * Changed definition of GO:0006267 from "The aggregation, arrangement and bonding together of a set of components to form the pre-replicative complex, multiprotein complex that forms at eukaryotic DNA replication origins during late M phase; its presence is required for replication initiation." to "The aggregation, arrangement and bonding together of a set of components to form the pre-replicative complex, a protein-DNA complex that forms at eukaryotic DNA replication origins during late M phase; its presence is required for replication initiation." * Removed GO:0006267 from category gosubset_prok * Created link GO:0009288 -OBO_REL:is_a-> GO:0043232 * Deleted GO:0009295 --OBO_REL:is_a--> GO:0044424 * Created link GO:0009295 -OBO_REL:is_a-> GO:0043232 * Deleted GO:0010168 --OBO_REL:is_a--> GO:0043226 * Created link GO:0010168 -OBO_REL:is_a-> GO:0043231 * Deleted GO:0012511 --OBO_REL:is_a--> GO:0043229 * Created link GO:0012511 -OBO_REL:is_a-> GO:0043231 * Created link GO:0019861 -OBO_REL:is_a-> GO:0043229 * Created link GO:0030075 -OBO_REL:is_a-> GO:0043232 * Changed definition of GO:0031261 from "A multiprotein complex assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication. The preinitiation complex is formed by the assembly of additional proteins onto an existing prereplicative complex. In budding yeast, the additional proteins include Cdc45p, Sld2p, Sld3p, Dpb11p, DNA polymerases, and others." to "A protein-DNA complex assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication. The preinitiation complex is formed by the assembly of additional proteins onto an existing prereplicative complex. In budding yeast, the additional proteins include Cdc45p, Sld2p, Sld3p, Dpb11p, DNA polymerases, and others; in fission yeast the GINS complex is present." * Added definition dbxref GOC:vw to GO:0031261 * Deleted GO:0042555 --part_of--> GO:0043596 * Changed definition of GO:0043226 from "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." to "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." * Created link GO:0043596 -has_part-> GO:0071162 * Created link GO:0044222 -OBO_REL:is_a-> GO:0043231 * Created link GO:0044223 -OBO_REL:is_a-> GO:0043231 * Deleted GO:0046858 --OBO_REL:is_a--> GO:0044424 * Created link GO:0046858 -OBO_REL:is_a-> GO:0043232 * Added GO:0070088 to category gosubset_prok * Created link GO:0070088 -OBO_REL:is_a-> GO:0043231 * Changed definition of GO:0090102 from "The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound." to "The progression of the cochlea over time from its formation to the mature structure. The cochlea is the snail-shaped portion of the inner ear that is responsible for the detection of sound." From gocvs at genome.stanford.edu Sat Nov 21 05:30:17 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 20 Nov 2009 21:30:17 -0800 Subject: [Go-diff] GO update 11/20/2009 Message-ID: <200911210530.nAL5UHDe027383@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.894 by 1.895 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0071168 * Created object of type obo:TERM with id GO:0071169 * Created object of type obo:TERM with id GO:0071170 * Created object of type obo:TERM with id GO:0071171 * [Changed name of GO:0071168 from "null" to "protein localization to chromatin", Set definition of GO:0071168 to "Any process by which a protein is transported to, or maintained at, a part of a chromosome that is organized into chromatin.", Added definition dbxref GOC:mah to GO:0071168, Created link GO:0071168 -OBO_REL:is_a-> GO:0034502, Assigned namespace "biological_process" to GO:0071168] * Changed name of GO:0071168 from "null" to "protein localization to chromatin" * Set definition of GO:0071168 to "Any process by which a protein is transported to, or maintained at, a part of a chromosome that is organized into chromatin." * Added definition dbxref GOC:mah to GO:0071168 * Created link GO:0071168 -OBO_REL:is_a-> GO:0034502 * Assigned namespace "biological_process" to GO:0071168 * [Changed name of GO:0071169 from "null" to "establishment of protein localization to chromatin", Set definition of GO:0071169 to "The directed movement of a protein to a part of a chromosome that is organized into chromatin.", Added definition dbxref GOC:mah to GO:0071169, Created link GO:0071169 -part_of-> GO:0071168, Created link GO:0071169 -OBO_REL:is_a-> GO:0070199, Assigned namespace "biological_process" to GO:0071169] * Changed name of GO:0071169 from "null" to "establishment of protein localization to chromatin" * Set definition of GO:0071169 to "The directed movement of a protein to a part of a chromosome that is organized into chromatin." * Added definition dbxref GOC:mah to GO:0071169 * Created link GO:0071169 -part_of-> GO:0071168 * Created link GO:0071169 -OBO_REL:is_a-> GO:0070199 * Assigned namespace "biological_process" to GO:0071169 * [Changed name of GO:0071170 from "null" to "site-specific DNA replication termination", Added comment "See also the biological process term 'replication fork arrest ; GO:0043111' and its children.", Set definition of GO:0071170 to "A DNA replication termination process that takes place at a specific termination site.", Added definition dbxref GOC:mah to GO:0071170, Added definition dbxref PMID:12009298 to GO:0071170, Added definition dbxref PMID:18723894 to GO:0071170, Created link GO:0071170 -OBO_REL:is_a-> GO:0006274, Assigned namespace "biological_process" to GO:0071170] * Changed name of GO:0071170 from "null" to "site-specific DNA replication termination" * Added comment "See also the biological process term 'replication fork arrest ; GO:0043111' and its children." * Set definition of GO:0071170 to "A DNA replication termination process that takes place at a specific termination site." * Added definition dbxref GOC:mah to GO:0071170 * Added definition dbxref PMID:12009298 to GO:0071170 * Added definition dbxref PMID:18723894 to GO:0071170 * Created link GO:0071170 -OBO_REL:is_a-> GO:0006274 * Assigned namespace "biological_process" to GO:0071170 * [Changed name of GO:0071171 from "null" to "site-specific DNA replication termination at RTS1 barrier", Set definition of GO:0071171 to "A DNA replication termination process that takes place at the RTS1 termination site in the mating type locus, in a specific direction required for subsequent imprinting and mating-type switching.", Added definition dbxref GOC:vw to GO:0071171, Added definition dbxref PMID:12009298 to GO:0071171, Added definition dbxref PMID:18723894 to GO:0071171, Created link GO:0071171 -OBO_REL:is_a-> GO:0071170, Assigned namespace "biological_process" to GO:0071171] * Changed name of GO:0071171 from "null" to "site-specific DNA replication termination at RTS1 barrier" * Set definition of GO:0071171 to "A DNA replication termination process that takes place at the RTS1 termination site in the mating type locus, in a specific direction required for subsequent imprinting and mating-type switching." * Added definition dbxref GOC:vw to GO:0071171 * Added definition dbxref PMID:12009298 to GO:0071171 * Added definition dbxref PMID:18723894 to GO:0071171 * Created link GO:0071171 -OBO_REL:is_a-> GO:0071170 * Assigned namespace "biological_process" to GO:0071171 * Changed definition of GO:0000104 from "Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor. No reaction with quinols." to "Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor." * Added synonym "DNA nicking activity" to GO:0004520 * Added general dbxref GOC:mah to synonym DNA nicking activity of GO:0004520 * Deleted definition dbxref UniProtKB:Q13889 from GO:0005675 * added secondary id GO:0015457 to GO:0006810 * added secondary id GO:0015460 to GO:0006810 * Added synonym "auxiliary transport protein activity" to GO:0006810 * Added general dbxref GOC:mah to synonym auxiliary transport protein activity of GO:0006810 * Added synonym "transport accessory protein activity" to GO:0006810 * Added general dbxref GOC:mah to synonym transport accessory protein activity of GO:0006810 * added secondary id GO:0015458 to GO:0006813 * Added synonym "low voltage-dependent potassium channel auxiliary protein activity" to GO:0006813 * Added general dbxref GOC:mah to synonym low voltage-dependent potassium channel auxiliary protein activity of GO:0006813 * Added synonym "low voltage-gated potassium channel auxiliary protein activity" to GO:0006813 * Added general dbxref GOC:mah to synonym low voltage-gated potassium channel auxiliary protein activity of GO:0006813 * added secondary id GO:0016974 to GO:0006814 * Added synonym "sodium channel auxiliary protein activity" to GO:0006814 * Added general dbxref GOC:mah to synonym sodium channel auxiliary protein activity of GO:0006814 * Created link GO:0008177 -OBO_REL:is_a-> GO:0000104 * Deleted definition dbxref UniProtKB:Q10039 from GO:0009345 * Deleted definition dbxref UniProtKB:Q8YVJ2 from GO:0009345 * Added definition dbxref PMID:15733854 to GO:0009345 * Changed definition of GO:0009675 from "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). Transporter with a high affinity for sulfate, that mediates the active uptake of sulfate from areas of low sulfate concentration to high sulfate concentration." to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). In high affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations." * Deleted definition dbxref UniProtKB:P53391 from GO:0009675 * Added definition dbxref GOC:mah to GO:0009675 * Changed definition of GO:0009676 from "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). Transporter that mediates the transport of sulfate between cellular or subcellular compartments with a low affinity for hydrogen and sulfate." to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sulfate(out) + H+(out) = sulfate(in) + H+(in). low affinity transport the transporter is able to bind the solute only if it is present at very high concentrations." * Added definition dbxref GOC:mah to GO:0009676 * Deleted GO:0015458 --OBO_REL:is_a--> GO:0015457 * Deleted GO:0016247 --OBO_REL:is_a--> GO:0015457 * Deleted GO:0016249 --OBO_REL:is_a--> GO:0015457 * Deleted GO:0016974 --OBO_REL:is_a--> GO:0015457 * Deleted GO:0015460 --OBO_REL:is_a--> GO:0015457 * Destroyed object GO:0015457 * Destroyed object GO:0015458 * Destroyed object GO:0015460 * Deleted GO:0016247 --OBO_REL:is_a--> GO:0015457 * Created link GO:0016247 -OBO_REL:is_a-> GO:0003674 * Destroyed object GO:0016249 * Deleted definition dbxref UniProtKB:P48546 from GO:0016519 * Added definition dbxref GOC:mah to GO:0016519 * Added definition dbxref PMID:8243312 to GO:0016519 * Deleted definition dbxref UniProtKB:P32082 from GO:0016520 * Added definition dbxref PMID:12529933 to GO:0016520 * Changed definition of GO:0016593 from "A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Hpr1p, Ccr4p, Ctr9p, Rtf1p, and Leo1p." to "A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p." * Added synonym "Paf1 complex" to GO:0016593 * Added general dbxref GOC:cjk to synonym Paf1 complex of GO:0016593 * Changed synonym scope of GO:0016593 from "Related" to "Exact" * Added synonym "Paf1p complex" to GO:0016593 * Added general dbxref GOC:cjk to synonym Paf1p complex of GO:0016593 * Changed synonym scope of GO:0016593 from "Related" to "Exact" * Destroyed object GO:0016974 * Changed definition of GO:0022613 from "The cellular process by which a complex containing RNA and proteins is synthesized, aggregates, and bonds together. Includes the synthesis of the constituent RNA and protein molecules." to "The cellular process by which a complex containing RNA and proteins is synthesized, aggregates, and bonds together. Includes the biosynthesis of the constituent RNA and protein molecules, and those macromolecular modifications that are involved in synthesis or assembly of the ribonucleoprotein complex." * Added synonym "protein localization to organelle" to GO:0033365 * Added general dbxref GOC:mah to synonym protein localization to organelle of GO:0033365 * Changed synonym scope of GO:0033365 from "Related" to "Exact" * Added synonym "protein localization to secretory granule" to GO:0033366 * Added general dbxref GOC:mah to synonym protein localization to secretory granule of GO:0033366 * Changed synonym scope of GO:0033366 from "Related" to "Exact" * Added synonym "protein localization to Golgi apparatus" to GO:0034067 * Added general dbxref GOC:mah to synonym protein localization to Golgi apparatus of GO:0034067 * Changed synonym scope of GO:0034067 from "Related" to "Exact" * Added synonym "protein localization to nucleus" to GO:0034504 * Added general dbxref GOC:mah to synonym protein localization to nucleus of GO:0034504 * Changed synonym scope of GO:0034504 from "Related" to "Exact" * added secondary id GO:0016249 to GO:0034613 * Added synonym "channel localizer activity" to GO:0034613 * Added general dbxref GOC:mah to synonym channel localizer activity of GO:0034613 * Changed synonym scope of GO:0034613 from "Related" to "Narrow" * Changed definition of GO:0042546 from "The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis." to "The process by which a cell wall is synthesized, aggregates, and bonds together. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis." * Added definition dbxref GOC:mah to GO:0042546 * Added comment "See also the biological process term 'site-specific replication termination ; GO:0071170' and its children." * Deleted definition dbxref UniProtKB:P44990 from GO:0043800 * Added definition dbxref MetaCyc:R12-RXN to GO:0043800 * Added definition dbxref PMID:11839305 to GO:0043800 * Deleted definition dbxref UniProtKB:Q5WCM6 from GO:0043801 * Added definition dbxref PMID:16075199 to GO:0043801 * Deleted definition dbxref UniProtKB:P42912 from GO:0043877 * Added definition dbxref PMID:10931310 to GO:0043877 * Deleted definition dbxref UniProtKB:Q46839 from GO:0043879 * Deleted definition dbxref Wikipedia:Glycolic_acid from GO:0043879 * Changed definition of GO:0044085 from "The process by which a cellular component is synthesized, aggregates, and bonds together." to "The process by which a cellular component is synthesized, aggregates, and bonds together. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component." * Added definition dbxref GOC:mah to GO:0044085 * Changed definition of GO:0070271 from "The cellular process by which a protein complex is synthesized, aggregates, and bonds together. Includes the synthesis of the constituent protein molecules." to "The cellular process by which a protein complex is synthesized, aggregates, and bonds together. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex." * Added synonym "protein localization to mitochondrion" to GO:0070585 * Added general dbxref GOC:mah to synonym protein localization to mitochondrion of GO:0070585 * Changed synonym scope of GO:0070585 from "Related" to "Exact" * Added synonym "protein localization to endoplasmic reticulum" to GO:0070972 * Added general dbxref GOC:mah to synonym protein localization to endoplasmic reticulum of GO:0070972 * Changed synonym scope of GO:0070972 from "Related" to "Exact" From gocvs at genome.stanford.edu Tue Nov 24 05:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 23 Nov 2009 21:30:12 -0800 Subject: [Go-diff] GO update 11/23/2009 Message-ID: <200911240530.nAO5UC1V009134@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.895 by 1.896 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0071172 * Created object of type obo:TERM with id GO:0071173 * Created object of type obo:TERM with id GO:0071174 * Created object of type obo:TERM with id GO:0071175 * Created object of type obo:TERM with id GO:0071176 * Created object of type obo:TERM with id GO:0071177 * Created object of type obo:TERM with id GO:0071178 * Created object of type obo:TERM with id GO:0071179 * Created object of type obo:TERM with id GO:0071180 * Created object of type obo:TERM with id GO:0071181 * Created object of type obo:TERM with id GO:0071182 * Created object of type obo:TERM with id GO:0071183 * Created object of type obo:TERM with id GO:0071184 * Created object of type obo:TERM with id GO:0071185 * Created object of type obo:TERM with id GO:0071186 * Created object of type obo:TERM with id GO:0071187 * Created object of type obo:TERM with id GO:0071188 * Created object of type obo:TERM with id GO:0071189 * Created object of type obo:TERM with id GO:0071190 * Created object of type obo:TERM with id GO:0071191 * Created object of type obo:TERM with id GO:0071192 * Created object of type obo:TERM with id GO:0071193 * Created object of type obo:TERM with id GO:0071194 * Created object of type obo:TERM with id GO:0071195 * Created object of type obo:TERM with id GO:0071196 * Created object of type obo:TERM with id GO:0071197 * Created object of type obo:TERM with id GO:0071198 * Created object of type obo:TERM with id GO:0071199 * Created object of type obo:TERM with id GO:0071200 * Created object of type obo:TERM with id GO:0071201 * Created object of type obo:TERM with id GO:0071202 * [Changed name of GO:0071172 from "null" to "dihydromonapterin reductase activity", Set definition of GO:0071172 to "Catalysis of the reaction: 7,8-dihydromonapterin + NADPH = tetrahydromonapterin + NADP+.", Added definition dbxref GOC:imk to GO:0071172, Added definition dbxref PMID:19897652 to GO:0071172, Added GO:0071172 to category gosubset_prok, Created link GO:0071172 -OBO_REL:is_a-> GO:0016646, Assigned namespace "molecular_function" to GO:0071172] * Changed name of GO:0071172 from "null" to "dihydromonapterin reductase activity" * Set definition of GO:0071172 to "Catalysis of the reaction: 7,8-dihydromonapterin + NADPH = tetrahydromonapterin + NADP+." * Added definition dbxref GOC:imk to GO:0071172 * Added definition dbxref PMID:19897652 to GO:0071172 * Added GO:0071172 to category gosubset_prok * Created link GO:0071172 -OBO_REL:is_a-> GO:0016646 * Assigned namespace "molecular_function" to GO:0071172 * [Changed name of GO:0071173 from "null" to "spindle assembly checkpoint", Set definition of GO:0071173 to "A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle.", Added definition dbxref GOC:mah to GO:0071173, Added synonym "SAC" to GO:0071173, Added general dbxref GOC:mah to synonym SAC of GO:0071173, Changed synonym scope of GO:0071173 from "Related" to "Broad", Created link GO:0071173 -OBO_REL:is_a-> GO:0031577, Assigned namespace "biological_process" to GO:0071173] * Changed name of GO:0071173 from "null" to "spindle assembly checkpoint" * Set definition of GO:0071173 to "A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle." * Added definition dbxref GOC:mah to GO:0071173 * Added synonym "SAC" to GO:0071173 * Added general dbxref GOC:mah to synonym SAC of GO:0071173 * Changed synonym scope of GO:0071173 from "Related" to "Broad" * Created link GO:0071173 -OBO_REL:is_a-> GO:0031577 * Assigned namespace "biological_process" to GO:0071173 * [Changed name of GO:0071174 from "null" to "mitotic cell cycle spindle checkpoint", Set definition of GO:0071174 to "A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle.", Added definition dbxref GOC:mah to GO:0071174, Added synonym "mitotic spindle checkpoint" to GO:0071174, Added general dbxref GOC:mah to synonym mitotic spindle checkpoint of GO:0071174, Changed synonym scope of GO:0071174 from "Related" to "Exact", Created link GO:0071174 -OBO_REL:is_a-> GO:0031577, Assigned namespace "biological_process" to GO:0071174] * Changed name of GO:0071174 from "null" to "mitotic cell cycle spindle checkpoint" * Set definition of GO:0071174 to "A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle." * Added definition dbxref GOC:mah to GO:0071174 * Added synonym "mitotic spindle checkpoint" to GO:0071174 * Added general dbxref GOC:mah to synonym mitotic spindle checkpoint of GO:0071174 * Changed synonym scope of GO:0071174 from "Related" to "Exact" * Created link GO:0071174 -OBO_REL:is_a-> GO:0031577 * Assigned namespace "biological_process" to GO:0071174 * [Changed name of GO:0071175 from "null" to "MAML2-RBP-Jkappa-ICN1 complex", Set definition of GO:0071175 to "A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071175, Added synonym "MAML2-RBP-Jkappa-Notch1 complex" to GO:0071175, Added general dbxref CORUM:1949 to synonym MAML2-RBP-Jkappa-Notch1 complex of GO:0071175, Changed synonym scope of GO:0071175 from "Related" to "Exact", Created link GO:0071175 -OBO_REL:is_a-> GO:0043234, Created link GO:0071175 -OBO_REL:is_a-> GO:0044451, Assigned namespace "cellular_component" to GO:0071175] * Changed name of GO:0071175 from "null" to "MAML2-RBP-Jkappa-ICN1 complex" * Set definition of GO:0071175 to "A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071175 * Added synonym "MAML2-RBP-Jkappa-Notch1 complex" to GO:0071175 * Added general dbxref CORUM:1949 to synonym MAML2-RBP-Jkappa-Notch1 complex of GO:0071175 * Changed synonym scope of GO:0071175 from "Related" to "Exact" * Created link GO:0071175 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071175 -OBO_REL:is_a-> GO:0044451 * Assigned namespace "cellular_component" to GO:0071175 * [Changed name of GO:0071176 from "null" to "MAML2-RBP-Jkappa-ICN2 complex", Set definition of GO:0071176 to "A protein complex that consists of the intracellular domain of Notch2 (ICN2), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071176, Added synonym "MAML2-RBP-Jkappa-Notch2 complex" to GO:0071176, Added general dbxref CORUM:3217 to synonym MAML2-RBP-Jkappa-Notch2 complex of GO:0071176, Changed synonym scope of GO:0071176 from "Related" to "Exact", Created link GO:0071176 -OBO_REL:is_a-> GO:0044451, Created link GO:0071176 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071176] * Changed name of GO:0071176 from "null" to "MAML2-RBP-Jkappa-ICN2 complex" * Set definition of GO:0071176 to "A protein complex that consists of the intracellular domain of Notch2 (ICN2), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071176 * Added synonym "MAML2-RBP-Jkappa-Notch2 complex" to GO:0071176 * Added general dbxref CORUM:3217 to synonym MAML2-RBP-Jkappa-Notch2 complex of GO:0071176 * Changed synonym scope of GO:0071176 from "Related" to "Exact" * Created link GO:0071176 -OBO_REL:is_a-> GO:0044451 * Created link GO:0071176 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071176 * [Changed name of GO:0071177 from "null" to "MAML2-RBP-Jkappa-ICN3 complex", Set definition of GO:0071177 to "A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071177, Added synonym "MAML2-RBP-Jkappa-Notch3 complex" to GO:0071177, Added general dbxref CORUM:3218 to synonym MAML2-RBP-Jkappa-Notch3 complex of GO:0071177, Changed synonym scope of GO:0071177 from "Related" to "Exact", Created link GO:0071177 -OBO_REL:is_a-> GO:0043234, Created link GO:0071177 -OBO_REL:is_a-> GO:0044451, Assigned namespace "cellular_component" to GO:0071177] * Changed name of GO:0071177 from "null" to "MAML2-RBP-Jkappa-ICN3 complex" * Set definition of GO:0071177 to "A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071177 * Added synonym "MAML2-RBP-Jkappa-Notch3 complex" to GO:0071177 * Added general dbxref CORUM:3218 to synonym MAML2-RBP-Jkappa-Notch3 complex of GO:0071177 * Changed synonym scope of GO:0071177 from "Related" to "Exact" * Created link GO:0071177 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071177 -OBO_REL:is_a-> GO:0044451 * Assigned namespace "cellular_component" to GO:0071177 * [Changed name of GO:0071178 from "null" to "MAML2-RBP-Jkappa-ICN4 complex", Set definition of GO:0071178 to "A protein complex that consists of the intracellular domain of Notch4 (ICN4), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071178, Added synonym "MAML2-RBP-Jkappa-Notch4 complex" to GO:0071178, Added general dbxref CORUM:3219 to synonym MAML2-RBP-Jkappa-Notch4 complex of GO:0071178, Changed synonym scope of GO:0071178 from "Related" to "Exact", Created link GO:0071178 -OBO_REL:is_a-> GO:0043234, Created link GO:0071178 -OBO_REL:is_a-> GO:0044451, Assigned namespace "cellular_component" to GO:0071178] * Changed name of GO:0071178 from "null" to "MAML2-RBP-Jkappa-ICN4 complex" * Set definition of GO:0071178 to "A protein complex that consists of the intracellular domain of Notch4 (ICN4), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071178 * Added synonym "MAML2-RBP-Jkappa-Notch4 complex" to GO:0071178 * Added general dbxref CORUM:3219 to synonym MAML2-RBP-Jkappa-Notch4 complex of GO:0071178 * Changed synonym scope of GO:0071178 from "Related" to "Exact" * Created link GO:0071178 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071178 -OBO_REL:is_a-> GO:0044451 * Assigned namespace "cellular_component" to GO:0071178 * [Changed name of GO:0071179 from "null" to "MAML3-RBP-Jkappa-ICN1 complex", Set definition of GO:0071179 to "A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071179, Added synonym "MAML3-RBP-Jkappa-Notch1 complex" to GO:0071179, Added general dbxref CORUM:3220 to synonym MAML3-RBP-Jkappa-Notch1 complex of GO:0071179, Changed synonym scope of GO:0071179 from "Related" to "Exact", Created link GO:0071179 -OBO_REL:is_a-> GO:0044451, Created link GO:0071179 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0071179] * Changed name of GO:0071179 from "null" to "MAML3-RBP-Jkappa-ICN1 complex" * Set definition of GO:0071179 to "A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071179 * Added synonym "MAML3-RBP-Jkappa-Notch1 complex" to GO:0071179 * Added general dbxref CORUM:3220 to synonym MAML3-RBP-Jkappa-Notch1 complex of GO:0071179 * Changed synonym scope of GO:0071179 from "Related" to "Exact" * Created link GO:0071179 -OBO_REL:is_a-> GO:0044451 * Created link GO:0071179 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0071179 * [Changed name of GO:0071180 from "null" to "MAML3-RBP-Jkappa-ICN2 complex", Set definition of GO:0071180 to "A protein complex that consists of the intracellular domain of Notch2 (ICN2), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071180, Added synonym "MAML3-RBP-Jkappa-Notch2 complex" to GO:0071180, Added general dbxref CORUM:3221 to synonym MAML3-RBP-Jkappa-Notch2 complex of GO:0071180, Changed synonym scope of GO:0071180 from "Related" to "Exact", Created link GO:0071180 -OBO_REL:is_a-> GO:0043234, Created link GO:0071180 -OBO_REL:is_a-> GO:0044451, Assigned namespace "cellular_component" to GO:0071180] * Changed name of GO:0071180 from "null" to "MAML3-RBP-Jkappa-ICN2 complex" * Set definition of GO:0071180 to "A protein complex that consists of the intracellular domain of Notch2 (ICN2), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071180 * Added synonym "MAML3-RBP-Jkappa-Notch2 complex" to GO:0071180 * Added general dbxref CORUM:3221 to synonym MAML3-RBP-Jkappa-Notch2 complex of GO:0071180 * Changed synonym scope of GO:0071180 from "Related" to "Exact" * Created link GO:0071180 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071180 -OBO_REL:is_a-> GO:0044451 * Assigned namespace "cellular_component" to GO:0071180 * [Changed name of GO:0071181 from "null" to "MAML3-RBP-Jkappa-ICN3 complex", Set definition of GO:0071181 to "A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071181, Added synonym "MAML3-RBP-Jkappa-Notch3 complex" to GO:0071181, Added general dbxref CORUM:3222 to synonym MAML3-RBP-Jkappa-Notch3 complex of GO:0071181, Changed synonym scope of GO:0071181 from "Related" to "Exact", Created link GO:0071181 -OBO_REL:is_a-> GO:0043234, Created link GO:0071181 -OBO_REL:is_a-> GO:0044451, Assigned namespace "cellular_component" to GO:0071181] * Changed name of GO:0071181 from "null" to "MAML3-RBP-Jkappa-ICN3 complex" * Set definition of GO:0071181 to "A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071181 * Added synonym "MAML3-RBP-Jkappa-Notch3 complex" to GO:0071181 * Added general dbxref CORUM:3222 to synonym MAML3-RBP-Jkappa-Notch3 complex of GO:0071181 * Changed synonym scope of GO:0071181 from "Related" to "Exact" * Created link GO:0071181 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071181 -OBO_REL:is_a-> GO:0044451 * Assigned namespace "cellular_component" to GO:0071181 * [Changed name of GO:0071182 from "null" to "MAML3-RBP-Jkappa-ICN4 complex", Set definition of GO:0071182 to "A protein complex that consists of the intracellular domain of Notch4 (ICN4), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling.", Added definition dbxref PMID:12370315 to GO:0071182, Added synonym "MAML3-RBP-Jkappa-Notch4 complex" to GO:0071182, Added general dbxref CORUM:3223 to synonym MAML3-RBP-Jkappa-Notch4 complex of GO:0071182, Changed synonym scope of GO:0071182 from "Related" to "Exact", Created link GO:0071182 -OBO_REL:is_a-> GO:0043234, Created link GO:0071182 -OBO_REL:is_a-> GO:0044451, Assigned namespace "cellular_component" to GO:0071182] * Changed name of GO:0071182 from "null" to "MAML3-RBP-Jkappa-ICN4 complex" * Set definition of GO:0071182 to "A protein complex that consists of the intracellular domain of Notch4 (ICN4), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-3 (MAML3); the complex is involved in transcriptional activation in response to Notch-mediated signaling." * Added definition dbxref PMID:12370315 to GO:0071182 * Added synonym "MAML3-RBP-Jkappa-Notch4 complex" to GO:0071182 * Added general dbxref CORUM:3223 to synonym MAML3-RBP-Jkappa-Notch4 complex of GO:0071182 * Changed synonym scope of GO:0071182 from "Related" to "Exact" * Created link GO:0071182 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071182 -OBO_REL:is_a-> GO:0044451 * Assigned namespace "cellular_component" to GO:0071182 * [Changed name of GO:0071183 from "null" to "protocadherin-alpha-protocadherin-gamma complex", Set definition of GO:0071183 to "A protein complex that contains two cell adhesion molecules, a protocadherin-alpha and a protocadherin-gamma, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071183, Created link GO:0071183 -OBO_REL:is_a-> GO:0043234, Created link GO:0071183 -OBO_REL:is_a-> GO:0044459, Assigned namespace "cellular_component" to GO:0071183] * Changed name of GO:0071183 from "null" to "protocadherin-alpha-protocadherin-gamma complex" * Set definition of GO:0071183 to "A protein complex that contains two cell adhesion molecules, a protocadherin-alpha and a protocadherin-gamma, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071183 * Created link GO:0071183 -OBO_REL:is_a-> GO:0043234 * Created link GO:0071183 -OBO_REL:is_a-> GO:0044459 * Assigned namespace "cellular_component" to GO:0071183 * [Changed name of GO:0071184 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-a1 complex", Set definition of GO:0071184 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-a1, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071184, Added synonym "Pcdhga1-Pcdha4 complex" to GO:0071184, Added general dbxref CORUM:1014 to synonym Pcdhga1-Pcdha4 complex of GO:0071184, Changed synonym scope of GO:0071184 from "Related" to "Narrow", Created link GO:0071184 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071184] * Changed name of GO:0071184 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-a1 complex" * Set definition of GO:0071184 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-a1, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071184 * Added synonym "Pcdhga1-Pcdha4 complex" to GO:0071184 * Added general dbxref CORUM:1014 to synonym Pcdhga1-Pcdha4 complex of GO:0071184 * Changed synonym scope of GO:0071184 from "Related" to "Narrow" * Created link GO:0071184 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071184 * [Changed name of GO:0071185 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-a3 complex", Set definition of GO:0071185 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-a3, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071185, Added synonym "Pcdhga1-Pcdhga3 complex" to GO:0071185, Added general dbxref CORUM:1016 to synonym Pcdhga1-Pcdhga3 complex of GO:0071185, Changed synonym scope of GO:0071185 from "Related" to "Narrow", Created link GO:0071185 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071185] * Changed name of GO:0071185 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-a3 complex" * Set definition of GO:0071185 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-a3, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071185 * Added synonym "Pcdhga1-Pcdhga3 complex" to GO:0071185 * Added general dbxref CORUM:1016 to synonym Pcdhga1-Pcdhga3 complex of GO:0071185 * Changed synonym scope of GO:0071185 from "Related" to "Narrow" * Created link GO:0071185 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071185 * [Changed name of GO:0071186 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-b2 complex", Set definition of GO:0071186 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-b2, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071186, Added synonym "Pcdhga1-Pcdhgb2 complex" to GO:0071186, Added general dbxref CORUM:1015 to synonym Pcdhga1-Pcdhgb2 complex of GO:0071186, Changed synonym scope of GO:0071186 from "Related" to "Narrow", Created link GO:0071186 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071186] * Changed name of GO:0071186 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-b2 complex" * Set definition of GO:0071186 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-b2, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071186 * Added synonym "Pcdhga1-Pcdhgb2 complex" to GO:0071186 * Added general dbxref CORUM:1015 to synonym Pcdhga1-Pcdhgb2 complex of GO:0071186 * Changed synonym scope of GO:0071186 from "Related" to "Narrow" * Created link GO:0071186 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071186 * [Changed name of GO:0071187 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-b4 complex", Set definition of GO:0071187 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-b4, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071187, Added synonym "Pcdhga1-Pcdhgb4 complex" to GO:0071187, Added general dbxref CORUM:1017 to synonym Pcdhga1-Pcdhgb4 complex of GO:0071187, Changed synonym scope of GO:0071187 from "Related" to "Narrow", Created link GO:0071187 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071187] * Changed name of GO:0071187 from "null" to "protocadherin-alpha-v4-protocadherin-gamma-b4 complex" * Set definition of GO:0071187 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v4 and protocadherin-gamma-b4, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071187 * Added synonym "Pcdhga1-Pcdhgb4 complex" to GO:0071187 * Added general dbxref CORUM:1017 to synonym Pcdhga1-Pcdhgb4 complex of GO:0071187 * Changed synonym scope of GO:0071187 from "Related" to "Narrow" * Created link GO:0071187 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071187 * [Changed name of GO:0071188 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-a1 complex", Set definition of GO:0071188 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-a1, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071188, Added synonym "Pcdha7-Pcdhga1 complex" to GO:0071188, Added general dbxref CORUM:1021 to synonym Pcdha7-Pcdhga1 complex of GO:0071188, Changed synonym scope of GO:0071188 from "Related" to "Narrow", Created link GO:0071188 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071188] * Changed name of GO:0071188 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-a1 complex" * Set definition of GO:0071188 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-a1, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071188 * Added synonym "Pcdha7-Pcdhga1 complex" to GO:0071188 * Added general dbxref CORUM:1021 to synonym Pcdha7-Pcdhga1 complex of GO:0071188 * Changed synonym scope of GO:0071188 from "Related" to "Narrow" * Created link GO:0071188 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071188 * [Changed name of GO:0071189 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-a3 complex", Set definition of GO:0071189 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-a3, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071189, Added synonym "Pcdha7-Pcdhga3 complex" to GO:0071189, Added general dbxref CORUM:1017 to synonym Pcdha7-Pcdhga3 complex of GO:0071189, Changed synonym scope of GO:0071189 from "Related" to "Narrow", Created link GO:0071189 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071189] * Changed name of GO:0071189 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-a3 complex" * Set definition of GO:0071189 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-a3, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071189 * Added synonym "Pcdha7-Pcdhga3 complex" to GO:0071189 * Added general dbxref CORUM:1017 to synonym Pcdha7-Pcdhga3 complex of GO:0071189 * Changed synonym scope of GO:0071189 from "Related" to "Narrow" * Created link GO:0071189 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071189 * [Changed name of GO:0071190 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-b2 complex", Set definition of GO:0071190 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-b2, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071190, Added synonym "Pcdha7-Pcdhgb4 complex" to GO:0071190, Added general dbxref CORUM:1018 to synonym Pcdha7-Pcdhgb4 complex of GO:0071190, Changed synonym scope of GO:0071190 from "Related" to "Narrow", Created link GO:0071190 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071190] * Changed name of GO:0071190 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-b2 complex" * Set definition of GO:0071190 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-b2, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071190 * Added synonym "Pcdha7-Pcdhgb4 complex" to GO:0071190 * Added general dbxref CORUM:1018 to synonym Pcdha7-Pcdhgb4 complex of GO:0071190 * Changed synonym scope of GO:0071190 from "Related" to "Narrow" * Created link GO:0071190 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071190 * [Changed name of GO:0071191 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-b4 complex", Set definition of GO:0071191 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-b4, and is involved in the regulation of protein localization to the plasma membrane.", Added definition dbxref PMID:15347688 to GO:0071191, Added synonym "Pcdha7-Pcdhgb2 complex" to GO:0071191, Added general dbxref CORUM:1020 to synonym Pcdha7-Pcdhgb2 complex of GO:0071191, Changed synonym scope of GO:0071191 from "Related" to "Narrow", Created link GO:0071191 -OBO_REL:is_a-> GO:0071183, Assigned namespace "cellular_component" to GO:0071191] * Changed name of GO:0071191 from "null" to "protocadherin-alpha-v7-protocadherin-gamma-b4 complex" * Set definition of GO:0071191 to "A protein complex that contains the cell adhesion molecules protocadherin-alpha-v7 and protocadherin-gamma-b4, and is involved in the regulation of protein localization to the plasma membrane." * Added definition dbxref PMID:15347688 to GO:0071191 * Added synonym "Pcdha7-Pcdhgb2 complex" to GO:0071191 * Added general dbxref CORUM:1020 to synonym Pcdha7-Pcdhgb2 complex of GO:0071191 * Changed synonym scope of GO:0071191 from "Related" to "Narrow" * Created link GO:0071191 -OBO_REL:is_a-> GO:0071183 * Assigned namespace "cellular_component" to GO:0071191 * [Changed name of GO:0071192 from "null" to "Kv4.2-KChIP1 channel complex", Set definition of GO:0071192 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.2.", Added definition dbxref PMID:15356203 to GO:0071192, Added general dbxref CORUM:606 to GO:0071192, Created link GO:0071192 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071192] * Changed name of GO:0071192 from "null" to "Kv4.2-KChIP1 channel complex" * Set definition of GO:0071192 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.2." * Added definition dbxref PMID:15356203 to GO:0071192 * Added general dbxref CORUM:606 to GO:0071192 * Created link GO:0071192 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071192 * [Changed name of GO:0071193 from "null" to "Kv4.2-KChIP2 channel complex", Set definition of GO:0071193 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP2 associated with the channel via interaction with the Kv alpha subunit 4.2.", Added definition dbxref PMID:15356203 to GO:0071193, Added general dbxref CORUM:607 to GO:0071193, Created link GO:0071193 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071193] * Changed name of GO:0071193 from "null" to "Kv4.2-KChIP2 channel complex" * Set definition of GO:0071193 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP2 associated with the channel via interaction with the Kv alpha subunit 4.2." * Added definition dbxref PMID:15356203 to GO:0071193 * Added general dbxref CORUM:607 to GO:0071193 * Created link GO:0071193 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071193 * [Changed name of GO:0071194 from "null" to "Kv4.2-KChIP3 channel complex", Set definition of GO:0071194 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP3 associated with the channel via interaction with the Kv alpha subunit 4.2.", Added definition dbxref PMID:15356203 to GO:0071194, Added general dbxref CORUM:608 to GO:0071194, Created link GO:0071194 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071194] * Changed name of GO:0071194 from "null" to "Kv4.2-KChIP3 channel complex" * Set definition of GO:0071194 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP3 associated with the channel via interaction with the Kv alpha subunit 4.2." * Added definition dbxref PMID:15356203 to GO:0071194 * Added general dbxref CORUM:608 to GO:0071194 * Created link GO:0071194 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071194 * [Changed name of GO:0071195 from "null" to "Kv4.2-KChIP4 channel complex", Set definition of GO:0071195 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP4 associated with the channel via interaction with the Kv alpha subunit 4.2.", Added definition dbxref PMID:15356203 to GO:0071195, Added general dbxref CORUM:3090 to GO:0071195, Created link GO:0071195 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071195] * Changed name of GO:0071195 from "null" to "Kv4.2-KChIP4 channel complex" * Set definition of GO:0071195 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP4 associated with the channel via interaction with the Kv alpha subunit 4.2." * Added definition dbxref PMID:15356203 to GO:0071195 * Added general dbxref CORUM:3090 to GO:0071195 * Created link GO:0071195 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071195 * [Changed name of GO:0071196 from "null" to "Kv4.3-KChIP1 channel complex", Set definition of GO:0071196 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.3.", Added definition dbxref PMID:15356203 to GO:0071196, Added general dbxref CORUM:3091 to GO:0071196, Created link GO:0071196 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071196] * Changed name of GO:0071196 from "null" to "Kv4.3-KChIP1 channel complex" * Set definition of GO:0071196 to "A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.3." * Added definition dbxref PMID:15356203 to GO:0071196 * Added general dbxref CORUM:3091 to GO:0071196 * Created link GO:0071196 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071196 * [Changed name of GO:0071197 from "null" to "Kv4.2-Kv4.3 channel complex", Set definition of GO:0071197 to "A voltage-gated potassium channel complex that contains the Kv alpha subunits 4.2 and 4.3.", Added definition dbxref PMID:15356203 to GO:0071197, Added general dbxref CORUM:609 to GO:0071197, Created link GO:0071197 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071197] * Changed name of GO:0071197 from "null" to "Kv4.2-Kv4.3 channel complex" * Set definition of GO:0071197 to "A voltage-gated potassium channel complex that contains the Kv alpha subunits 4.2 and 4.3." * Added definition dbxref PMID:15356203 to GO:0071197 * Added general dbxref CORUM:609 to GO:0071197 * Created link GO:0071197 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071197 * [Changed name of GO:0071198 from "null" to "Kv4.1-DPP6 channel complex", Set definition of GO:0071198 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.1.", Added definition dbxref PMID:15911355 to GO:0071198, Added general dbxref CORUM:600 to GO:0071198, Added synonym "Kv4.1-DPPX channel complex" to GO:0071198, Added general dbxref PMID:15911355 to synonym Kv4.1-DPPX channel complex of GO:0071198, Changed synonym scope of GO:0071198 from "Related" to "Exact", Created link GO:0071198 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071198] * Changed name of GO:0071198 from "null" to "Kv4.1-DPP6 channel complex" * Set definition of GO:0071198 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.1." * Added definition dbxref PMID:15911355 to GO:0071198 * Added general dbxref CORUM:600 to GO:0071198 * Added synonym "Kv4.1-DPPX channel complex" to GO:0071198 * Added general dbxref PMID:15911355 to synonym Kv4.1-DPPX channel complex of GO:0071198 * Changed synonym scope of GO:0071198 from "Related" to "Exact" * Created link GO:0071198 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071198 * [Changed name of GO:0071199 from "null" to "Kv4.1-DPP10 channel complex", Set definition of GO:0071199 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP10 associated with the channel via interaction with the Kv alpha subunit 4.1.", Added definition dbxref PMID:15911355 to GO:0071199, Added general dbxref CORUM:601 to GO:0071199, Added synonym "Kv4.1-DPPY channel complex" to GO:0071199, Added general dbxref PMID:15911355 to synonym Kv4.1-DPPY channel complex of GO:0071199, Changed synonym scope of GO:0071199 from "Related" to "Exact", Created link GO:0071199 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071199] * Changed name of GO:0071199 from "null" to "Kv4.1-DPP10 channel complex" * Set definition of GO:0071199 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP10 associated with the channel via interaction with the Kv alpha subunit 4.1." * Added definition dbxref PMID:15911355 to GO:0071199 * Added general dbxref CORUM:601 to GO:0071199 * Added synonym "Kv4.1-DPPY channel complex" to GO:0071199 * Added general dbxref PMID:15911355 to synonym Kv4.1-DPPY channel complex of GO:0071199 * Changed synonym scope of GO:0071199 from "Related" to "Exact" * Created link GO:0071199 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071199 * [Changed name of GO:0071200 from "null" to "Kv4.2-DPP6 channel complex", Set definition of GO:0071200 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.2.", Added definition dbxref PMID:12575952 to GO:0071200, Added definition dbxref PMID:15911355 to GO:0071200, Added general dbxref CORUM:603 to GO:0071200, Added synonym "Kv4.2-DPPX channel complex" to GO:0071200, Added general dbxref PMID:15911355 to synonym Kv4.2-DPPX channel complex of GO:0071200, Changed synonym scope of GO:0071200 from "Related" to "Exact", Created link GO:0071200 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071200] * Changed name of GO:0071200 from "null" to "Kv4.2-DPP6 channel complex" * Set definition of GO:0071200 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.2." * Added definition dbxref PMID:12575952 to GO:0071200 * Added definition dbxref PMID:15911355 to GO:0071200 * Added general dbxref CORUM:603 to GO:0071200 * Added synonym "Kv4.2-DPPX channel complex" to GO:0071200 * Added general dbxref PMID:15911355 to synonym Kv4.2-DPPX channel complex of GO:0071200 * Changed synonym scope of GO:0071200 from "Related" to "Exact" * Created link GO:0071200 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071200 * [Changed name of GO:0071201 from "null" to "Kv4.3-DPP6 channel complex", Set definition of GO:0071201 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.3.", Added definition dbxref PMID:12575952 to GO:0071201, Added definition dbxref PMID:15911355 to GO:0071201, Added general dbxref CORUM:599 to GO:0071201, Added synonym "Kv4.3-DPPX channel complex" to GO:0071201, Added general dbxref PMID:15911355 to synonym Kv4.3-DPPX channel complex of GO:0071201, Changed synonym scope of GO:0071201 from "Related" to "Exact", Created link GO:0071201 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071201] * Changed name of GO:0071201 from "null" to "Kv4.3-DPP6 channel complex" * Set definition of GO:0071201 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP6 associated with the channel via interaction with the Kv alpha subunit 4.3." * Added definition dbxref PMID:12575952 to GO:0071201 * Added definition dbxref PMID:15911355 to GO:0071201 * Added general dbxref CORUM:599 to GO:0071201 * Added synonym "Kv4.3-DPPX channel complex" to GO:0071201 * Added general dbxref PMID:15911355 to synonym Kv4.3-DPPX channel complex of GO:0071201 * Changed synonym scope of GO:0071201 from "Related" to "Exact" * Created link GO:0071201 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071201 * [Changed name of GO:0071202 from "null" to "Kv4.3-DPP10 channel complex", Set definition of GO:0071202 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP10 associated with the channel via interaction with the Kv alpha subunit 4.3.", Added definition dbxref PMID:15911355 to GO:0071202, Added general dbxref CORUM:598 to GO:0071202, Added synonym "Kv4.3-DPPY channel complex" to GO:0071202, Added general dbxref PMID:15911355 to synonym Kv4.3-DPPY channel complex of GO:0071202, Changed synonym scope of GO:0071202 from "Related" to "Exact", Created link GO:0071202 -OBO_REL:is_a-> GO:0008076, Assigned namespace "cellular_component" to GO:0071202] * Changed name of GO:0071202 from "null" to "Kv4.3-DPP10 channel complex" * Set definition of GO:0071202 to "A voltage-gated potassium channel complex that contains the peptidase-related protein DPP10 associated with the channel via interaction with the Kv alpha subunit 4.3." * Added definition dbxref PMID:15911355 to GO:0071202 * Added general dbxref CORUM:598 to GO:0071202 * Added synonym "Kv4.3-DPPY channel complex" to GO:0071202 * Added general dbxref PMID:15911355 to synonym Kv4.3-DPPY channel complex of GO:0071202 * Changed synonym scope of GO:0071202 from "Related" to "Exact" * Created link GO:0071202 -OBO_REL:is_a-> GO:0008076 * Assigned namespace "cellular_component" to GO:0071202 * Deleted synonym "mitotic spindle checkpoint" from GO:0007094 * Deleted GO:0007094 --OBO_REL:is_a--> GO:0031577 * Created link GO:0007094 -OBO_REL:is_a-> GO:0071173 * Created link GO:0007094 -OBO_REL:is_a-> GO:0071174 * Added synonym "p53 signaling pathway" to GO:0030330 * Added general dbxref GOC:mah to synonym p53 signaling pathway of GO:0030330 * Added general dbxref GOC:vk to synonym p53 signaling pathway of GO:0030330 * Added synonym "TP53 signaling pathway" to GO:0030330 * Added general dbxref GOC:mah to synonym TP53 signaling pathway of GO:0030330 * Added general dbxref GOC:vk to synonym TP53 signaling pathway of GO:0030330 * Changed definition of GO:0031577 from "A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and chromosomes are attached to the spindle." to "A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle." * Deleted synonym "SAC" from GO:0031577 * Deleted synonym "spindle assembly checkpoint" from GO:0031577 * Deleted GO:0031578 --OBO_REL:is_a--> GO:0031577 * Created link GO:0031578 -OBO_REL:is_a-> GO:0071174 * Deleted GO:0033316 --OBO_REL:is_a--> GO:0031577 * Created link GO:0033316 -OBO_REL:is_a-> GO:0071173 * Changed definition of GO:0044227 from "The cytoplasmic, a membrane-bound compartment found within Methanotrophic bacteria with enzymes and electron transfer proteins for methane catabolism. This structure is analogous to the thylakoid of Cyanobactera and the anammoxosome of anaerobic ammonium oxidation organisms." to "The cytoplasmic, a membrane-bound compartment found within Methanotrophic bacteria with enzymes and electron transfer proteins for methane catabolism. This structure is analogous to the thylakoid of Cyanobacteria and the anammoxosome of anaerobic ammonium oxidation organisms." * Changed definition of GO:0071163 from "The aggregation, arrangement and bonding together of a set of components to form the DNA replication preinitiation complex, a protein-DNA complex that is assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication, by the assembly of additional proteins onto an existing prereplicative complex" to "The aggregation, arrangement and bonding together of a set of components to form the DNA replication preinitiation complex, a protein-DNA complex that is assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication, by the assembly of additional proteins onto an existing prereplicative complex."