From gocvs at genome.stanford.edu Thu Oct 1 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 1 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/01/2009 Message-ID: <200910020430.n924UCYi005456@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.811 by 1.814 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003157 * Created object of type obo:TERM with id GO:0003158 * Created object of type obo:TERM with id GO:0003159 * Created object of type obo:TERM with id GO:0003160 * Created object of type obo:TERM with id GO:0003161 * Created object of type obo:TERM with id GO:0003162 * Created object of type obo:TERM with id GO:0003163 * Created object of type obo:TERM with id GO:0003164 * Created object of type obo:TERM with id GO:0003165 * Created object of type obo:TERM with id GO:0003166 * Created object of type obo:TERM with id GO:0003167 * Created object of type obo:TERM with id GO:0003168 * Created object of type obo:TERM with id GO:0070942 * Created object of type obo:TERM with id GO:0070943 * Created object of type obo:TERM with id GO:0070944 * Created object of type obo:TERM with id GO:0070945 * Created object of type obo:TERM with id GO:0070946 * Created object of type obo:TERM with id GO:0070947 * Created object of type obo:TERM with id GO:0070948 * Created object of type obo:TERM with id GO:0070949 * Created object of type obo:TERM with id GO:0070950 * Created object of type obo:TERM with id GO:0070951 * Created object of type obo:TERM with id GO:0070952 * Created object of type obo:TERM with id GO:0070953 * Created object of type obo:TERM with id GO:0070954 * Created object of type obo:TERM with id GO:0070955 * Created object of type obo:TERM with id GO:0070956 * Created object of type obo:TERM with id GO:0070957 * Created object of type obo:TERM with id GO:0070958 * Created object of type obo:TERM with id GO:0070959 * Created object of type obo:TERM with id GO:0070960 * Created object of type obo:TERM with id GO:0070961 * Created object of type obo:TERM with id GO:0070962 * Created object of type obo:TERM with id GO:0070963 * Created object of type obo:TERM with id GO:0070964 * Created object of type obo:TERM with id GO:0070965 * Created object of type obo:TERM with id GO:0070966 * [Changed name of GO:0003157 from "null" to "endocardium development", Set definition of GO:0003157 to "The process whose specific outcome is the progression of the endocardium over time, from its formation to the mature structure. The endocardium is an endothelium that is the innermost layer of tissue of the heart, and lines the heart chambers.", Added definition dbxref GOC:mtg_heart to GO:0003157, Created link GO:0003157 -OBO_REL:is_a-> GO:0003158, Created link GO:0003157 -part_of-> GO:0007507, Assigned namespace "biological_process" to GO:0003157] * Changed name of GO:0003157 from "null" to "endocardium development" * Set definition of GO:0003157 to "The process whose specific outcome is the progression of the endocardium over time, from its formation to the mature structure. The endocardium is an endothelium that is the innermost layer of tissue of the heart, and lines the heart chambers." * Added definition dbxref GOC:mtg_heart to GO:0003157 * Created link GO:0003157 -OBO_REL:is_a-> GO:0003158 * Created link GO:0003157 -part_of-> GO:0007507 * Assigned namespace "biological_process" to GO:0003157 * [Changed name of GO:0003158 from "null" to "endothelium development", Set definition of GO:0003158 to "The process whose specific outcome is the progression of an endothelium over time, from its formation to the mature structure. An endothelium is an epithelium that lines an anatomical structure.", Added definition dbxref GOC:mtg_heart to GO:0003158, Created link GO:0003158 -OBO_REL:is_a-> GO:0060429, Assigned namespace "biological_process" to GO:0003158] * Changed name of GO:0003158 from "null" to "endothelium development" * Set definition of GO:0003158 to "The process whose specific outcome is the progression of an endothelium over time, from its formation to the mature structure. An endothelium is an epithelium that lines an anatomical structure." * Added definition dbxref GOC:mtg_heart to GO:0003158 * Created link GO:0003158 -OBO_REL:is_a-> GO:0060429 * Assigned namespace "biological_process" to GO:0003158 * [Changed name of GO:0003159 from "null" to "morphogenesis of an endothelium", Set definition of GO:0003159 to "The process by which the anatomical structure of an endothelium are generated and organized. An endothelium is an epithelium that lines an anatomical structure.", Added definition dbxref GOC:mtg_heart to GO:0003159, Created link GO:0003159 -OBO_REL:is_a-> GO:0002009, Created link GO:0003159 -part_of-> GO:0003158, Assigned namespace "biological_process" to GO:0003159] * Changed name of GO:0003159 from "null" to "morphogenesis of an endothelium" * Set definition of GO:0003159 to "The process by which the anatomical structure of an endothelium are generated and organized. An endothelium is an epithelium that lines an anatomical structure." * Added definition dbxref GOC:mtg_heart to GO:0003159 * Created link GO:0003159 -OBO_REL:is_a-> GO:0002009 * Created link GO:0003159 -part_of-> GO:0003158 * Assigned namespace "biological_process" to GO:0003159 * [Changed name of GO:0003160 from "null" to "endocardium morphogenesis", Set definition of GO:0003160 to "The process by which the anatomical structure of the endocardium is generated and organized. The endocardium is an endothelium that is the innermost layer of tissue of the heart, and lines the heart chambers.", Added definition dbxref GOC:mtg_heart to GO:0003160, Created link GO:0003160 -part_of-> GO:0003157, Created link GO:0003160 -OBO_REL:is_a-> GO:0003159, Assigned namespace "biological_process" to GO:0003160] * Changed name of GO:0003160 from "null" to "endocardium morphogenesis" * Set definition of GO:0003160 to "The process by which the anatomical structure of the endocardium is generated and organized. The endocardium is an endothelium that is the innermost layer of tissue of the heart, and lines the heart chambers." * Added definition dbxref GOC:mtg_heart to GO:0003160 * Created link GO:0003160 -part_of-> GO:0003157 * Created link GO:0003160 -OBO_REL:is_a-> GO:0003159 * Assigned namespace "biological_process" to GO:0003160 * [Changed name of GO:0003161 from "null" to "cardiac conduction system development", Set definition of GO:0003161 to "The process whose specific outcome is the progression of the cardiac conduction system over time, from its formation to the mature structure. The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat.", Added definition dbxref GOC:mtg_heart to GO:0003161, Added synonym "cardiac impulse conducting system development" to GO:0003161, Added general dbxref GOC:mtg_heart to synonym cardiac impulse conducting system development of GO:0003161, Changed synonym scope of GO:0003161 from "Related" to "Exact", Added synonym "heart conduction system development" to GO:0003161, Added general dbxref GOC:mtg_heart to synonym heart conduction system development of GO:0003161, Changed synonym scope of GO:0003161 from "Related" to "Exact", Created link GO:0003161 -part_of-> GO:0007507, Created link GO:0003161 -OBO_REL:is_a-> GO:0048856, Assigned namespace "biological_process" to GO:0003161] * Changed name of GO:0003161 from "null" to "cardiac conduction system development" * Set definition of GO:0003161 to "The process whose specific outcome is the progression of the cardiac conduction system over time, from its formation to the mature structure. The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat." * Added definition dbxref GOC:mtg_heart to GO:0003161 * Added synonym "cardiac impulse conducting system development" to GO:0003161 * Added general dbxref GOC:mtg_heart to synonym cardiac impulse conducting system development of GO:0003161 * Changed synonym scope of GO:0003161 from "Related" to "Exact" * Added synonym "heart conduction system development" to GO:0003161 * Added general dbxref GOC:mtg_heart to synonym heart conduction system development of GO:0003161 * Changed synonym scope of GO:0003161 from "Related" to "Exact" * Created link GO:0003161 -part_of-> GO:0007507 * Created link GO:0003161 -OBO_REL:is_a-> GO:0048856 * Assigned namespace "biological_process" to GO:0003161 * [Changed name of GO:0003162 from "null" to "AV node development", Set definition of GO:0003162 to "The process whose specific outcome is the progression of the AV node over time, from its formation to the mature structure. The AV node is part of the cardiac conduction system that controls the timing of ventricle contraction by receiving signals from the SA node and relaying them to the His-Purkinje system.", Added definition dbxref GOC:mtg_heart to GO:0003162, Added synonym "atrioventricular node development" to GO:0003162, Added general dbxref GOC:mtg_heart to synonym atrioventricular node development of GO:0003162, Changed synonym scope of GO:0003162 from "Related" to "Exact", Created link GO:0003162 -part_of-> GO:0003161, Created link GO:0003162 -OBO_REL:is_a-> GO:0048856, Assigned namespace "biological_process" to GO:0003162] * Changed name of GO:0003162 from "null" to "AV node development" * Set definition of GO:0003162 to "The process whose specific outcome is the progression of the AV node over time, from its formation to the mature structure. The AV node is part of the cardiac conduction system that controls the timing of ventricle contraction by receiving signals from the SA node and relaying them to the His-Purkinje system." * Added definition dbxref GOC:mtg_heart to GO:0003162 * Added synonym "atrioventricular node development" to GO:0003162 * Added general dbxref GOC:mtg_heart to synonym atrioventricular node development of GO:0003162 * Changed synonym scope of GO:0003162 from "Related" to "Exact" * Created link GO:0003162 -part_of-> GO:0003161 * Created link GO:0003162 -OBO_REL:is_a-> GO:0048856 * Assigned namespace "biological_process" to GO:0003162 * [Changed name of GO:0003163 from "null" to "SA node development", Set definition of GO:0003163 to "The process whose specific outcome is the progression of the SA node over time, from its formation to the mature structure. The SA node is part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays information to the AV node.", Added definition dbxref GOC:mtg_heart to GO:0003163, Added synonym "sinoatrial node development" to GO:0003163, Added general dbxref GOC:mtg_heart to synonym sinoatrial node development of GO:0003163, Created link GO:0003163 -part_of-> GO:0003161, Created link GO:0003163 -OBO_REL:is_a-> GO:0048856, Assigned namespace "biological_process" to GO:0003163] * Changed name of GO:0003163 from "null" to "SA node development" * Set definition of GO:0003163 to "The process whose specific outcome is the progression of the SA node over time, from its formation to the mature structure. The SA node is part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays information to the AV node." * Added definition dbxref GOC:mtg_heart to GO:0003163 * Added synonym "sinoatrial node development" to GO:0003163 * Added general dbxref GOC:mtg_heart to synonym sinoatrial node development of GO:0003163 * Created link GO:0003163 -part_of-> GO:0003161 * Created link GO:0003163 -OBO_REL:is_a-> GO:0048856 * Assigned namespace "biological_process" to GO:0003163 * [Changed name of GO:0003164 from "null" to "His-Purkinje system development", Set definition of GO:0003164 to "The process whose specific outcome is the progression of the His-Purkinje system over time, from its formation to the mature structure. The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles.", Added definition dbxref GOC:mtg_heart to GO:0003164, Created link GO:0003164 -OBO_REL:is_a-> GO:0048856, Created link GO:0003164 -part_of-> GO:0003161, Assigned namespace "biological_process" to GO:0003164] * Changed name of GO:0003164 from "null" to "His-Purkinje system development" * Set definition of GO:0003164 to "The process whose specific outcome is the progression of the His-Purkinje system over time, from its formation to the mature structure. The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles." * Added definition dbxref GOC:mtg_heart to GO:0003164 * Created link GO:0003164 -OBO_REL:is_a-> GO:0048856 * Created link GO:0003164 -part_of-> GO:0003161 * Assigned namespace "biological_process" to GO:0003164 * [Changed name of GO:0003165 from "null" to "cardiac Purkinje fiber development", Set definition of GO:0003165 to "The process whose specific outcome is the progression of a cardiac Purkinje fiber over time, from its formation to the mature structure. The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle.", Added definition dbxref GOC:mtg_heart to GO:0003165, Created link GO:0003165 -OBO_REL:is_a-> GO:0048856, Created link GO:0003165 -part_of-> GO:0003164, Assigned namespace "biological_process" to GO:0003165] * Changed name of GO:0003165 from "null" to "cardiac Purkinje fiber development" * Set definition of GO:0003165 to "The process whose specific outcome is the progression of a cardiac Purkinje fiber over time, from its formation to the mature structure. The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle." * Added definition dbxref GOC:mtg_heart to GO:0003165 * Created link GO:0003165 -OBO_REL:is_a-> GO:0048856 * Created link GO:0003165 -part_of-> GO:0003164 * Assigned namespace "biological_process" to GO:0003165 * [Changed name of GO:0003166 from "null" to "bundle of His development", Set definition of GO:0003166 to "The process whose specific outcome is the progression of the bundle of His over time, from its formation to the mature structure. The bundle of His is part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers.", Added definition dbxref GOC:mtg_heart to GO:0003166, Added synonym "atrioventricular bundle development" to GO:0003166, Added general dbxref GOC:mtg_heart to synonym atrioventricular bundle development of GO:0003166, Changed synonym scope of GO:0003166 from "Related" to "Exact", Created link GO:0003166 -OBO_REL:is_a-> GO:0048856, Created link GO:0003166 -part_of-> GO:0003164, Assigned namespace "biological_process" to GO:0003166] * Changed name of GO:0003166 from "null" to "bundle of His development" * Set definition of GO:0003166 to "The process whose specific outcome is the progression of the bundle of His over time, from its formation to the mature structure. The bundle of His is part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers." * Added definition dbxref GOC:mtg_heart to GO:0003166 * Added synonym "atrioventricular bundle development" to GO:0003166 * Added general dbxref GOC:mtg_heart to synonym atrioventricular bundle development of GO:0003166 * Changed synonym scope of GO:0003166 from "Related" to "Exact" * Created link GO:0003166 -OBO_REL:is_a-> GO:0048856 * Created link GO:0003166 -part_of-> GO:0003164 * Assigned namespace "biological_process" to GO:0003166 * [Changed name of GO:0003167 from "null" to "atrioventricular bundle cell differentiation", Set definition of GO:0003167 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the atrioventricular bundle. These cells are specialized cardiomyocytes that transmit signals from the AV node to the cardiac Purkinje fibers.", Added definition dbxref GOC:mtg_heart to GO:0003167, Created link GO:0003167 -OBO_REL:is_a-> GO:0060932, Created link GO:0003167 -part_of-> GO:0003166, Assigned namespace "biological_process" to GO:0003167] * Changed name of GO:0003167 from "null" to "atrioventricular bundle cell differentiation" * Set definition of GO:0003167 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the atrioventricular bundle. These cells are specialized cardiomyocytes that transmit signals from the AV node to the cardiac Purkinje fibers." * Added definition dbxref GOC:mtg_heart to GO:0003167 * Created link GO:0003167 -OBO_REL:is_a-> GO:0060932 * Created link GO:0003167 -part_of-> GO:0003166 * Assigned namespace "biological_process" to GO:0003167 * [Changed name of GO:0003168 from "null" to "cardiac Purkinje fiber cell differentiation", Set definition of GO:0003168 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac Purkinje fiber cell. These cells are specialized cardiomyocytes that receive signals from the bundle of His and innervate the ventricular cardiac muscle.", Added definition dbxref GOC:mtg_heart to GO:0003168, Created link GO:0003168 -part_of-> GO:0003165, Created link GO:0003168 -OBO_REL:is_a-> GO:0060932, Assigned namespace "biological_process" to GO:0003168] * Changed name of GO:0003168 from "null" to "cardiac Purkinje fiber cell differentiation" * Set definition of GO:0003168 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac Purkinje fiber cell. These cells are specialized cardiomyocytes that receive signals from the bundle of His and innervate the ventricular cardiac muscle." * Added definition dbxref GOC:mtg_heart to GO:0003168 * Created link GO:0003168 -part_of-> GO:0003165 * Created link GO:0003168 -OBO_REL:is_a-> GO:0060932 * Assigned namespace "biological_process" to GO:0003168 * [Changed name of GO:0070942 from "null" to "neutrophil mediated cytotoxicity", Set definition of GO:0070942 to "The directed killing of a target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070942, Added definition dbxref ISBN:0781765196 to GO:0070942, Added synonym "neutrophil mediated cell killing" to GO:0070942, Added general dbxref GOC:add to synonym neutrophil mediated cell killing of GO:0070942, Changed synonym scope of GO:0070942 from "Related" to "Exact", Created link GO:0070942 -OBO_REL:is_a-> GO:0001909, Assigned namespace "biological_process" to GO:0070942] * Changed name of GO:0070942 from "null" to "neutrophil mediated cytotoxicity" * Set definition of GO:0070942 to "The directed killing of a target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070942 * Added definition dbxref ISBN:0781765196 to GO:0070942 * Added synonym "neutrophil mediated cell killing" to GO:0070942 * Added general dbxref GOC:add to synonym neutrophil mediated cell killing of GO:0070942 * Changed synonym scope of GO:0070942 from "Related" to "Exact" * Created link GO:0070942 -OBO_REL:is_a-> GO:0001909 * Assigned namespace "biological_process" to GO:0070942 * [Changed name of GO:0070943 from "null" to "neutrophil mediated killing of symbiont cell", Set definition of GO:0070943 to "The directed killing of a symbiont target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070943, Added definition dbxref ISBN:0781765196 to GO:0070943, Created link GO:0070943 -OBO_REL:is_a-> GO:0051873, Created link GO:0070943 -OBO_REL:is_a-> GO:0070942, Assigned namespace "biological_process" to GO:0070943] * Changed name of GO:0070943 from "null" to "neutrophil mediated killing of symbiont cell" * Set definition of GO:0070943 to "The directed killing of a symbiont target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070943 * Added definition dbxref ISBN:0781765196 to GO:0070943 * Created link GO:0070943 -OBO_REL:is_a-> GO:0051873 * Created link GO:0070943 -OBO_REL:is_a-> GO:0070942 * Assigned namespace "biological_process" to GO:0070943 * [Changed name of GO:0070944 from "null" to "neutrophil mediated killing of bacterium", Set definition of GO:0070944 to "The directed killing of a bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070944, Added definition dbxref ISBN:0781765196 to GO:0070944, Created link GO:0070944 -OBO_REL:is_a-> GO:0070943, Assigned namespace "biological_process" to GO:0070944] * Changed name of GO:0070944 from "null" to "neutrophil mediated killing of bacterium" * Set definition of GO:0070944 to "The directed killing of a bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070944 * Added definition dbxref ISBN:0781765196 to GO:0070944 * Created link GO:0070944 -OBO_REL:is_a-> GO:0070943 * Assigned namespace "biological_process" to GO:0070944 * [Changed name of GO:0070945 from "null" to "neutrophil mediated killing of gram-negative bacterium", Set definition of GO:0070945 to "The directed killing of a gram-negative bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070945, Added definition dbxref ISBN:0781765196 to GO:0070945, Created link GO:0070945 -OBO_REL:is_a-> GO:0070944, Assigned namespace "biological_process" to GO:0070945] * Changed name of GO:0070945 from "null" to "neutrophil mediated killing of gram-negative bacterium" * Set definition of GO:0070945 to "The directed killing of a gram-negative bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070945 * Added definition dbxref ISBN:0781765196 to GO:0070945 * Created link GO:0070945 -OBO_REL:is_a-> GO:0070944 * Assigned namespace "biological_process" to GO:0070945 * [Changed name of GO:0070946 from "null" to "neutrophil mediated killing of gram-positive bacterium", Set definition of GO:0070946 to "The directed killing of a gram-positive bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070946, Added definition dbxref ISBN:0781765196 to GO:0070946, Created link GO:0070946 -OBO_REL:is_a-> GO:0070944, Assigned namespace "biological_process" to GO:0070946] * Changed name of GO:0070946 from "null" to "neutrophil mediated killing of gram-positive bacterium" * Set definition of GO:0070946 to "The directed killing of a gram-positive bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070946 * Added definition dbxref ISBN:0781765196 to GO:0070946 * Created link GO:0070946 -OBO_REL:is_a-> GO:0070944 * Assigned namespace "biological_process" to GO:0070946 * [Changed name of GO:0070947 from "null" to "neutrophil mediated killing of fungus", Set definition of GO:0070947 to "The directed killing of a fungal cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070947, Added definition dbxref ISBN:0781765196 to GO:0070947, Created link GO:0070947 -OBO_REL:is_a-> GO:0070943, Assigned namespace "biological_process" to GO:0070947] * Changed name of GO:0070947 from "null" to "neutrophil mediated killing of fungus" * Set definition of GO:0070947 to "The directed killing of a fungal cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070947 * Added definition dbxref ISBN:0781765196 to GO:0070947 * Created link GO:0070947 -OBO_REL:is_a-> GO:0070943 * Assigned namespace "biological_process" to GO:0070947 * [Changed name of GO:0070948 from "null" to "regulation of neutrophil mediated cytotoxicity", Set definition of GO:0070948 to "The directed killing of a target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070948, Added definition dbxref GOC:mah to GO:0070948, Added synonym "regulation of neutrophil mediated cell killing" to GO:0070948, Added general dbxref GOC:add to synonym regulation of neutrophil mediated cell killing of GO:0070948, Changed synonym scope of GO:0070948 from "Related" to "Exact", Created link GO:0070948 -regulates-> GO:0070942, Created link GO:0070948 -OBO_REL:is_a-> GO:0001910, Assigned namespace "biological_process" to GO:0070948] * Changed name of GO:0070948 from "null" to "regulation of neutrophil mediated cytotoxicity" * Set definition of GO:0070948 to "The directed killing of a target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070948 * Added definition dbxref GOC:mah to GO:0070948 * Added synonym "regulation of neutrophil mediated cell killing" to GO:0070948 * Added general dbxref GOC:add to synonym regulation of neutrophil mediated cell killing of GO:0070948 * Changed synonym scope of GO:0070948 from "Related" to "Exact" * Created link GO:0070948 -regulates-> GO:0070942 * Created link GO:0070948 -OBO_REL:is_a-> GO:0001910 * Assigned namespace "biological_process" to GO:0070948 * [Changed name of GO:0070949 from "null" to "regulation of neutrophil mediated killing of symbiont cell", Set definition of GO:0070949 to "The directed killing of a symbiont target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070949, Added definition dbxref GOC:mah to GO:0070949, Created link GO:0070949 -regulates-> GO:0070943, Created link GO:0070949 -OBO_REL:is_a-> GO:0070948, Assigned namespace "biological_process" to GO:0070949] * Changed name of GO:0070949 from "null" to "regulation of neutrophil mediated killing of symbiont cell" * Set definition of GO:0070949 to "The directed killing of a symbiont target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070949 * Added definition dbxref GOC:mah to GO:0070949 * Created link GO:0070949 -regulates-> GO:0070943 * Created link GO:0070949 -OBO_REL:is_a-> GO:0070948 * Assigned namespace "biological_process" to GO:0070949 * [Changed name of GO:0070950 from "null" to "regulation of neutrophil mediated killing of bacterium", Set definition of GO:0070950 to "The directed killing of a bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070950, Added definition dbxref GOC:mah to GO:0070950, Created link GO:0070950 -regulates-> GO:0070944, Created link GO:0070950 -OBO_REL:is_a-> GO:0070949, Assigned namespace "biological_process" to GO:0070950] * Changed name of GO:0070950 from "null" to "regulation of neutrophil mediated killing of bacterium" * Set definition of GO:0070950 to "The directed killing of a bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070950 * Added definition dbxref GOC:mah to GO:0070950 * Created link GO:0070950 -regulates-> GO:0070944 * Created link GO:0070950 -OBO_REL:is_a-> GO:0070949 * Assigned namespace "biological_process" to GO:0070950 * [Changed name of GO:0070951 from "null" to "regulation of neutrophil mediated killing of gram-negative bacterium", Set definition of GO:0070951 to "The directed killing of a gram-negative bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070951, Added definition dbxref GOC:mah to GO:0070951, Created link GO:0070951 -OBO_REL:is_a-> GO:0070950, Created link GO:0070951 -regulates-> GO:0070945, Assigned namespace "biological_process" to GO:0070951] * Changed name of GO:0070951 from "null" to "regulation of neutrophil mediated killing of gram-negative bacterium" * Set definition of GO:0070951 to "The directed killing of a gram-negative bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070951 * Added definition dbxref GOC:mah to GO:0070951 * Created link GO:0070951 -OBO_REL:is_a-> GO:0070950 * Created link GO:0070951 -regulates-> GO:0070945 * Assigned namespace "biological_process" to GO:0070951 * [Changed name of GO:0070952 from "null" to "regulation of neutrophil mediated killing of gram-positive bacterium", Set definition of GO:0070952 to "The directed killing of a gram-positive bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070952, Added definition dbxref GOC:mah to GO:0070952, Created link GO:0070952 -OBO_REL:is_a-> GO:0070950, Created link GO:0070952 -regulates-> GO:0070946, Assigned namespace "biological_process" to GO:0070952] * Changed name of GO:0070952 from "null" to "regulation of neutrophil mediated killing of gram-positive bacterium" * Set definition of GO:0070952 to "The directed killing of a gram-positive bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070952 * Added definition dbxref GOC:mah to GO:0070952 * Created link GO:0070952 -OBO_REL:is_a-> GO:0070950 * Created link GO:0070952 -regulates-> GO:0070946 * Assigned namespace "biological_process" to GO:0070952 * [Changed name of GO:0070953 from "null" to "regulation of neutrophil mediated killing of fungus", Set definition of GO:0070953 to "The directed killing of a fungal cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070953, Added definition dbxref GOC:mah to GO:0070953, Created link GO:0070953 -regulates-> GO:0070947, Created link GO:0070953 -OBO_REL:is_a-> GO:0070949, Assigned namespace "biological_process" to GO:0070953] * Changed name of GO:0070953 from "null" to "regulation of neutrophil mediated killing of fungus" * Set definition of GO:0070953 to "The directed killing of a fungal cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070953 * Added definition dbxref GOC:mah to GO:0070953 * Created link GO:0070953 -regulates-> GO:0070947 * Created link GO:0070953 -OBO_REL:is_a-> GO:0070949 * Assigned namespace "biological_process" to GO:0070953 * [Changed name of GO:0070954 from "null" to "negative regulation of neutrophil mediated cytotoxicity", Set definition of GO:0070954 to "Any process that decreases the frequency, rate or extent of the directed killing of a target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070954, Added definition dbxref GOC:mah to GO:0070954, Added synonym "down regulation of neutrophil mediated cytotoxicity" to GO:0070954, Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated cytotoxicity of GO:0070954, Changed synonym scope of GO:0070954 from "Related" to "Exact", Added synonym "down-regulation of neutrophil mediated cytotoxicity" to GO:0070954, Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated cytotoxicity of GO:0070954, Changed synonym scope of GO:0070954 from "Related" to "Exact", Added synonym "downregulation of neutrophil mediated cytotoxicity" to GO:0070954, Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated cytotoxicity of GO:0070954, Changed synonym scope of GO:0070954 from "Related" to "Exact", Added synonym "inhibition of neutrophil mediated cytotoxicity" to GO:0070954, Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated cytotoxicity of GO:0070954, Changed synonym scope of GO:0070954 from "Related" to "Narrow", Added synonym "negative regulation of neutrophil mediated cell killing" to GO:0070954, Added general dbxref GOC:add to synonym negative regulation of neutrophil mediated cell killing of GO:0070954, Changed synonym scope of GO:0070954 from "Related" to "Exact", Created link GO:0070954 -OBO_REL:is_a-> GO:0070948, Created link GO:0070954 -OBO_REL:is_a-> GO:0001911, Created link GO:0070954 -negatively_regulates-> GO:0070942, Assigned namespace "biological_process" to GO:0070954] * Changed name of GO:0070954 from "null" to "negative regulation of neutrophil mediated cytotoxicity" * Set definition of GO:0070954 to "Any process that decreases the frequency, rate or extent of the directed killing of a target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070954 * Added definition dbxref GOC:mah to GO:0070954 * Added synonym "down regulation of neutrophil mediated cytotoxicity" to GO:0070954 * Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated cytotoxicity of GO:0070954 * Changed synonym scope of GO:0070954 from "Related" to "Exact" * Added synonym "down-regulation of neutrophil mediated cytotoxicity" to GO:0070954 * Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated cytotoxicity of GO:0070954 * Changed synonym scope of GO:0070954 from "Related" to "Exact" * Added synonym "downregulation of neutrophil mediated cytotoxicity" to GO:0070954 * Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated cytotoxicity of GO:0070954 * Changed synonym scope of GO:0070954 from "Related" to "Exact" * Added synonym "inhibition of neutrophil mediated cytotoxicity" to GO:0070954 * Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated cytotoxicity of GO:0070954 * Changed synonym scope of GO:0070954 from "Related" to "Narrow" * Added synonym "negative regulation of neutrophil mediated cell killing" to GO:0070954 * Added general dbxref GOC:add to synonym negative regulation of neutrophil mediated cell killing of GO:0070954 * Changed synonym scope of GO:0070954 from "Related" to "Exact" * Created link GO:0070954 -OBO_REL:is_a-> GO:0070948 * Created link GO:0070954 -OBO_REL:is_a-> GO:0001911 * Created link GO:0070954 -negatively_regulates-> GO:0070942 * Assigned namespace "biological_process" to GO:0070954 * [Changed name of GO:0070955 from "null" to "negative regulation of neutrophil mediated killing of symbiont cell", Set definition of GO:0070955 to "Any process that decreases the frequency, rate or extent of the directed killing of a symbiont target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070955, Added definition dbxref GOC:mah to GO:0070955, Added synonym "down regulation of neutrophil mediated killing of symbiont cell" to GO:0070955, Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of symbiont cell of GO:0070955, Changed synonym scope of GO:0070955 from "Related" to "Exact", Added synonym "down-regulation of neutrophil mediated killing of symbiont cell" to GO:0070955, Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of symbiont cell of GO:0070955, Changed synonym scope of GO:0070955 from "Related" to "Exact", Added synonym "downregulation of neutrophil mediated killing of symbiont cell" to GO:0070955, Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of symbiont cell of GO:0070955, Changed synonym scope of GO:0070955 from "Related" to "Exact", Added synonym "inhibition of neutrophil mediated killing of symbiont cell" to GO:0070955, Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of symbiont cell of GO:0070955, Changed synonym scope of GO:0070955 from "Related" to "Narrow", Created link GO:0070955 -OBO_REL:is_a-> GO:0070954, Created link GO:0070955 -OBO_REL:is_a-> GO:0070949, Created link GO:0070955 -negatively_regulates-> GO:0070943, Assigned namespace "biological_process" to GO:0070955] * Changed name of GO:0070955 from "null" to "negative regulation of neutrophil mediated killing of symbiont cell" * Set definition of GO:0070955 to "Any process that decreases the frequency, rate or extent of the directed killing of a symbiont target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070955 * Added definition dbxref GOC:mah to GO:0070955 * Added synonym "down regulation of neutrophil mediated killing of symbiont cell" to GO:0070955 * Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of symbiont cell of GO:0070955 * Changed synonym scope of GO:0070955 from "Related" to "Exact" * Added synonym "down-regulation of neutrophil mediated killing of symbiont cell" to GO:0070955 * Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of symbiont cell of GO:0070955 * Changed synonym scope of GO:0070955 from "Related" to "Exact" * Added synonym "downregulation of neutrophil mediated killing of symbiont cell" to GO:0070955 * Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of symbiont cell of GO:0070955 * Changed synonym scope of GO:0070955 from "Related" to "Exact" * Added synonym "inhibition of neutrophil mediated killing of symbiont cell" to GO:0070955 * Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of symbiont cell of GO:0070955 * Changed synonym scope of GO:0070955 from "Related" to "Narrow" * Created link GO:0070955 -OBO_REL:is_a-> GO:0070954 * Created link GO:0070955 -OBO_REL:is_a-> GO:0070949 * Created link GO:0070955 -negatively_regulates-> GO:0070943 * Assigned namespace "biological_process" to GO:0070955 * [Changed name of GO:0070956 from "null" to "negative regulation of neutrophil mediated killing of bacterium", Set definition of GO:0070956 to "Any process that decreases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070956, Added definition dbxref GOC:mah to GO:0070956, Added synonym "down regulation of neutrophil mediated killing of bacterium" to GO:0070956, Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of bacterium of GO:0070956, Changed synonym scope of GO:0070956 from "Related" to "Exact", Added synonym "down-regulation of neutrophil mediated killing of bacterium" to GO:0070956, Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of bacterium of GO:0070956, Changed synonym scope of GO:0070956 from "Related" to "Exact", Added synonym "downregulation of neutrophil mediated killing of bacterium" to GO:0070956, Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of bacterium of GO:0070956, Changed synonym scope of GO:0070956 from "Related" to "Exact", Added synonym "inhibition of neutrophil mediated killing of bacterium" to GO:0070956, Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of bacterium of GO:0070956, Changed synonym scope of GO:0070956 from "Related" to "Narrow", Created link GO:0070956 -OBO_REL:is_a-> GO:0070950, Created link GO:0070956 -negatively_regulates-> GO:0070944, Created link GO:0070956 -OBO_REL:is_a-> GO:0070955, Assigned namespace "biological_process" to GO:0070956] * Changed name of GO:0070956 from "null" to "negative regulation of neutrophil mediated killing of bacterium" * Set definition of GO:0070956 to "Any process that decreases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070956 * Added definition dbxref GOC:mah to GO:0070956 * Added synonym "down regulation of neutrophil mediated killing of bacterium" to GO:0070956 * Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of bacterium of GO:0070956 * Changed synonym scope of GO:0070956 from "Related" to "Exact" * Added synonym "down-regulation of neutrophil mediated killing of bacterium" to GO:0070956 * Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of bacterium of GO:0070956 * Changed synonym scope of GO:0070956 from "Related" to "Exact" * Added synonym "downregulation of neutrophil mediated killing of bacterium" to GO:0070956 * Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of bacterium of GO:0070956 * Changed synonym scope of GO:0070956 from "Related" to "Exact" * Added synonym "inhibition of neutrophil mediated killing of bacterium" to GO:0070956 * Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of bacterium of GO:0070956 * Changed synonym scope of GO:0070956 from "Related" to "Narrow" * Created link GO:0070956 -OBO_REL:is_a-> GO:0070950 * Created link GO:0070956 -negatively_regulates-> GO:0070944 * Created link GO:0070956 -OBO_REL:is_a-> GO:0070955 * Assigned namespace "biological_process" to GO:0070956 * [Changed name of GO:0070957 from "null" to "negative regulation of neutrophil mediated killing of gram-negative bacterium", Set definition of GO:0070957 to "Any process that decreases the frequency, rate or extent of the directed killing of a gram-negative bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070957, Added definition dbxref GOC:mah to GO:0070957, Added synonym "down regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070957, Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070957, Changed synonym scope of GO:0070957 from "Related" to "Exact", Added synonym "down-regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070957, Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070957, Changed synonym scope of GO:0070957 from "Related" to "Exact", Added synonym "downregulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070957, Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of gram-negative bacterium of GO:0070957, Changed synonym scope of GO:0070957 from "Related" to "Exact", Added synonym "inhibition of neutrophil mediated killing of gram-negative bacterium" to GO:0070957, Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of gram-negative bacterium of GO:0070957, Changed synonym scope of GO:0070957 from "Related" to "Narrow", Created link GO:0070957 -OBO_REL:is_a-> GO:0070956, Created link GO:0070957 -negatively_regulates-> GO:0070945, Created link GO:0070957 -OBO_REL:is_a-> GO:0070951, Assigned namespace "biological_process" to GO:0070957] * Changed name of GO:0070957 from "null" to "negative regulation of neutrophil mediated killing of gram-negative bacterium" * Set definition of GO:0070957 to "Any process that decreases the frequency, rate or extent of the directed killing of a gram-negative bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070957 * Added definition dbxref GOC:mah to GO:0070957 * Added synonym "down regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070957 * Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070957 * Changed synonym scope of GO:0070957 from "Related" to "Exact" * Added synonym "down-regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070957 * Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070957 * Changed synonym scope of GO:0070957 from "Related" to "Exact" * Added synonym "downregulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070957 * Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of gram-negative bacterium of GO:0070957 * Changed synonym scope of GO:0070957 from "Related" to "Exact" * Added synonym "inhibition of neutrophil mediated killing of gram-negative bacterium" to GO:0070957 * Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of gram-negative bacterium of GO:0070957 * Changed synonym scope of GO:0070957 from "Related" to "Narrow" * Created link GO:0070957 -OBO_REL:is_a-> GO:0070956 * Created link GO:0070957 -negatively_regulates-> GO:0070945 * Created link GO:0070957 -OBO_REL:is_a-> GO:0070951 * Assigned namespace "biological_process" to GO:0070957 * [Changed name of GO:0070958 from "null" to "negative regulation of neutrophil mediated killing of gram-positive bacterium", Set definition of GO:0070958 to "Any process that decreases the frequency, rate or extent of the directed killing of a gram-positive bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070958, Added definition dbxref GOC:mah to GO:0070958, Added synonym "down regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070958, Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070958, Changed synonym scope of GO:0070958 from "Related" to "Exact", Added synonym "down-regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070958, Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070958, Changed synonym scope of GO:0070958 from "Related" to "Exact", Added synonym "downregulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070958, Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of gram-positive bacterium of GO:0070958, Changed synonym scope of GO:0070958 from "Related" to "Exact", Added synonym "inhibition of neutrophil mediated killing of gram-positive bacterium" to GO:0070958, Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of gram-positive bacterium of GO:0070958, Changed synonym scope of GO:0070958 from "Related" to "Narrow", Created link GO:0070958 -negatively_regulates-> GO:0070946, Created link GO:0070958 -OBO_REL:is_a-> GO:0070952, Created link GO:0070958 -OBO_REL:is_a-> GO:0070956, Assigned namespace "biological_process" to GO:0070958] * Changed name of GO:0070958 from "null" to "negative regulation of neutrophil mediated killing of gram-positive bacterium" * Set definition of GO:0070958 to "Any process that decreases the frequency, rate or extent of the directed killing of a gram-positive bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070958 * Added definition dbxref GOC:mah to GO:0070958 * Added synonym "down regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070958 * Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070958 * Changed synonym scope of GO:0070958 from "Related" to "Exact" * Added synonym "down-regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070958 * Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070958 * Changed synonym scope of GO:0070958 from "Related" to "Exact" * Added synonym "downregulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070958 * Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of gram-positive bacterium of GO:0070958 * Changed synonym scope of GO:0070958 from "Related" to "Exact" * Added synonym "inhibition of neutrophil mediated killing of gram-positive bacterium" to GO:0070958 * Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of gram-positive bacterium of GO:0070958 * Changed synonym scope of GO:0070958 from "Related" to "Narrow" * Created link GO:0070958 -negatively_regulates-> GO:0070946 * Created link GO:0070958 -OBO_REL:is_a-> GO:0070952 * Created link GO:0070958 -OBO_REL:is_a-> GO:0070956 * Assigned namespace "biological_process" to GO:0070958 * [Changed name of GO:0070959 from "null" to "negative regulation of neutrophil mediated killing of fungus", Set definition of GO:0070959 to "Any process that decreases the frequency, rate or extent of the directed killing of a fungal cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070959, Added definition dbxref GOC:mah to GO:0070959, Added synonym "down regulation of neutrophil mediated killing of fungus" to GO:0070959, Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of fungus of GO:0070959, Changed synonym scope of GO:0070959 from "Related" to "Exact", Added synonym "down-regulation of neutrophil mediated killing of fungus" to GO:0070959, Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of fungus of GO:0070959, Changed synonym scope of GO:0070959 from "Related" to "Exact", Added synonym "downregulation of neutrophil mediated killing of fungus" to GO:0070959, Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of fungus of GO:0070959, Changed synonym scope of GO:0070959 from "Related" to "Exact", Added synonym "inhibition of neutrophil mediated killing of fungus" to GO:0070959, Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of fungus of GO:0070959, Changed synonym scope of GO:0070959 from "Related" to "Narrow", Created link GO:0070959 -OBO_REL:is_a-> GO:0070953, Created link GO:0070959 -OBO_REL:is_a-> GO:0070955, Created link GO:0070959 -negatively_regulates-> GO:0070947, Assigned namespace "biological_process" to GO:0070959] * Changed name of GO:0070959 from "null" to "negative regulation of neutrophil mediated killing of fungus" * Set definition of GO:0070959 to "Any process that decreases the frequency, rate or extent of the directed killing of a fungal cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070959 * Added definition dbxref GOC:mah to GO:0070959 * Added synonym "down regulation of neutrophil mediated killing of fungus" to GO:0070959 * Added general dbxref GOC:mah to synonym down regulation of neutrophil mediated killing of fungus of GO:0070959 * Changed synonym scope of GO:0070959 from "Related" to "Exact" * Added synonym "down-regulation of neutrophil mediated killing of fungus" to GO:0070959 * Added general dbxref GOC:mah to synonym down-regulation of neutrophil mediated killing of fungus of GO:0070959 * Changed synonym scope of GO:0070959 from "Related" to "Exact" * Added synonym "downregulation of neutrophil mediated killing of fungus" to GO:0070959 * Added general dbxref GOC:mah to synonym downregulation of neutrophil mediated killing of fungus of GO:0070959 * Changed synonym scope of GO:0070959 from "Related" to "Exact" * Added synonym "inhibition of neutrophil mediated killing of fungus" to GO:0070959 * Added general dbxref GOC:mah to synonym inhibition of neutrophil mediated killing of fungus of GO:0070959 * Changed synonym scope of GO:0070959 from "Related" to "Narrow" * Created link GO:0070959 -OBO_REL:is_a-> GO:0070953 * Created link GO:0070959 -OBO_REL:is_a-> GO:0070955 * Created link GO:0070959 -negatively_regulates-> GO:0070947 * Assigned namespace "biological_process" to GO:0070959 * [Changed name of GO:0070960 from "null" to "positive regulation of neutrophil mediated cytotoxicity", Set definition of GO:0070960 to "Any process that increases the frequency, rate or extent of the directed killing of a target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070960, Added definition dbxref GOC:mah to GO:0070960, Added synonym "activation of neutrophil mediated cytotoxicity" to GO:0070960, Added general dbxref GOC:mah to synonym activation of neutrophil mediated cytotoxicity of GO:0070960, Changed synonym scope of GO:0070960 from "Related" to "Narrow", Added synonym "positive regulation of neutrophil mediated cell killing" to GO:0070960, Added general dbxref GOC:add to synonym positive regulation of neutrophil mediated cell killing of GO:0070960, Changed synonym scope of GO:0070960 from "Related" to "Exact", Added synonym "stimulation of neutrophil mediated cytotoxicity" to GO:0070960, Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated cytotoxicity of GO:0070960, Changed synonym scope of GO:0070960 from "Related" to "Narrow", Added synonym "up regulation of neutrophil mediated cytotoxicity" to GO:0070960, Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated cytotoxicity of GO:0070960, Changed synonym scope of GO:0070960 from "Related" to "Exact", Added synonym "up-regulation of neutrophil mediated cytotoxicity" to GO:0070960, Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated cytotoxicity of GO:0070960, Changed synonym scope of GO:0070960 from "Related" to "Exact", Added synonym "upregulation of neutrophil mediated cytotoxicity" to GO:0070960, Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated cytotoxicity of GO:0070960, Changed synonym scope of GO:0070960 from "Related" to "Exact", Created link GO:0070960 -OBO_REL:is_a-> GO:0001912, Created link GO:0070960 -positively_regulates-> GO:0070942, Created link GO:0070960 -OBO_REL:is_a-> GO:0070948, Assigned namespace "biological_! process" to GO:0070960] * Changed name of GO:0070960 from "null" to "positive regulation of neutrophil mediated cytotoxicity" * Set definition of GO:0070960 to "Any process that increases the frequency, rate or extent of the directed killing of a target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070960 * Added definition dbxref GOC:mah to GO:0070960 * Added synonym "activation of neutrophil mediated cytotoxicity" to GO:0070960 * Added general dbxref GOC:mah to synonym activation of neutrophil mediated cytotoxicity of GO:0070960 * Changed synonym scope of GO:0070960 from "Related" to "Narrow" * Added synonym "positive regulation of neutrophil mediated cell killing" to GO:0070960 * Added general dbxref GOC:add to synonym positive regulation of neutrophil mediated cell killing of GO:0070960 * Changed synonym scope of GO:0070960 from "Related" to "Exact" * Added synonym "stimulation of neutrophil mediated cytotoxicity" to GO:0070960 * Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated cytotoxicity of GO:0070960 * Changed synonym scope of GO:0070960 from "Related" to "Narrow" * Added synonym "up regulation of neutrophil mediated cytotoxicity" to GO:0070960 * Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated cytotoxicity of GO:0070960 * Changed synonym scope of GO:0070960 from "Related" to "Exact" * Added synonym "up-regulation of neutrophil mediated cytotoxicity" to GO:0070960 * Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated cytotoxicity of GO:0070960 * Changed synonym scope of GO:0070960 from "Related" to "Exact" * Added synonym "upregulation of neutrophil mediated cytotoxicity" to GO:0070960 * Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated cytotoxicity of GO:0070960 * Changed synonym scope of GO:0070960 from "Related" to "Exact" * Created link GO:0070960 -OBO_REL:is_a-> GO:0001912 * Created link GO:0070960 -positively_regulates-> GO:0070942 * Created link GO:0070960 -OBO_REL:is_a-> GO:0070948 * Assigned namespace "biological_process" to GO:0070960 * [Changed name of GO:0070961 from "null" to "positive regulation of neutrophil mediated killing of symbiont cell", Set definition of GO:0070961 to "Any process that increases the frequency, rate or extent of the directed killing of a symbiont target cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070961, Added definition dbxref GOC:mah to GO:0070961, Added synonym "activation of neutrophil mediated killing of symbiont cell" to GO:0070961, Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of symbiont cell of GO:0070961, Changed synonym scope of GO:0070961 from "Related" to "Narrow", Added synonym "stimulation of neutrophil mediated killing of symbiont cell" to GO:0070961, Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of symbiont cell of GO:0070961, Changed synonym scope of GO:0070961 from "Related" to "Narrow", Added synonym "up regulation of neutrophil mediated killing of symbiont cell" to GO:0070961, Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of symbiont cell of GO:0070961, Changed synonym scope of GO:0070961 from "Related" to "Exact", Added synonym "up-regulation of neutrophil mediated killing of symbiont cellu" to GO:0070961, Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of symbiont cellu of GO:0070961, Changed synonym scope of GO:0070961 from "Related" to "Exact", Added synonym "upregulation of neutrophil mediated killing of symbiont cell" to GO:0070961, Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of symbiont cell of GO:0070961, Changed synonym scope of GO:0070961 from "Related" to "Exact", Created link GO:0070961 -positively_regulates-> GO:0070943, Created link GO:0070961 -OBO_REL:is_a-> GO:0070949, Created link GO:0070961 -OBO_REL:is_a-> GO:0070960, Assigned namespace "biological_process" to GO:0070961] * Changed name of GO:0070961 from "null" to "positive regulation of neutrophil mediated killing of symbiont cell" * Set definition of GO:0070961 to "Any process that increases the frequency, rate or extent of the directed killing of a symbiont target cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070961 * Added definition dbxref GOC:mah to GO:0070961 * Added synonym "activation of neutrophil mediated killing of symbiont cell" to GO:0070961 * Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of symbiont cell of GO:0070961 * Changed synonym scope of GO:0070961 from "Related" to "Narrow" * Added synonym "stimulation of neutrophil mediated killing of symbiont cell" to GO:0070961 * Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of symbiont cell of GO:0070961 * Changed synonym scope of GO:0070961 from "Related" to "Narrow" * Added synonym "up regulation of neutrophil mediated killing of symbiont cell" to GO:0070961 * Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of symbiont cell of GO:0070961 * Changed synonym scope of GO:0070961 from "Related" to "Exact" * Added synonym "up-regulation of neutrophil mediated killing of symbiont cellu" to GO:0070961 * Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of symbiont cellu of GO:0070961 * Changed synonym scope of GO:0070961 from "Related" to "Exact" * Added synonym "upregulation of neutrophil mediated killing of symbiont cell" to GO:0070961 * Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of symbiont cell of GO:0070961 * Changed synonym scope of GO:0070961 from "Related" to "Exact" * Created link GO:0070961 -positively_regulates-> GO:0070943 * Created link GO:0070961 -OBO_REL:is_a-> GO:0070949 * Created link GO:0070961 -OBO_REL:is_a-> GO:0070960 * Assigned namespace "biological_process" to GO:0070961 * [Changed name of GO:0070962 from "null" to "positive regulation of neutrophil mediated killing of bacterium", Set definition of GO:0070962 to "Any process that increases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070962, Added definition dbxref GOC:mah to GO:0070962, Added synonym "activation of neutrophil mediated killing of bacterium" to GO:0070962, Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of bacterium of GO:0070962, Changed synonym scope of GO:0070962 from "Related" to "Narrow", Added synonym "stimulation of neutrophil mediated killing of bacterium" to GO:0070962, Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of bacterium of GO:0070962, Changed synonym scope of GO:0070962 from "Related" to "Narrow", Added synonym "up regulation of neutrophil mediated killing of bacterium" to GO:0070962, Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of bacterium of GO:0070962, Changed synonym scope of GO:0070962 from "Related" to "Exact", Added synonym "up-regulation of neutrophil mediated killing of bacterium" to GO:0070962, Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of bacterium of GO:0070962, Changed synonym scope of GO:0070962 from "Related" to "Exact", Added synonym "upregulation of neutrophil mediated killing of bacterium" to GO:0070962, Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of bacterium of GO:0070962, Changed synonym scope of GO:0070962 from "Related" to "Exact", Created link GO:0070962 -OBO_REL:is_a-> GO:0070961, Created link GO:0070962 -positively_regulates-> GO:0070944, Created link GO:0070962 -OBO_REL:is_a-> GO:0070950, Assigned namespace "biological_process" to GO:0070962] * Changed name of GO:0070962 from "null" to "positive regulation of neutrophil mediated killing of bacterium" * Set definition of GO:0070962 to "Any process that increases the frequency, rate or extent of the directed killing of a bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070962 * Added definition dbxref GOC:mah to GO:0070962 * Added synonym "activation of neutrophil mediated killing of bacterium" to GO:0070962 * Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of bacterium of GO:0070962 * Changed synonym scope of GO:0070962 from "Related" to "Narrow" * Added synonym "stimulation of neutrophil mediated killing of bacterium" to GO:0070962 * Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of bacterium of GO:0070962 * Changed synonym scope of GO:0070962 from "Related" to "Narrow" * Added synonym "up regulation of neutrophil mediated killing of bacterium" to GO:0070962 * Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of bacterium of GO:0070962 * Changed synonym scope of GO:0070962 from "Related" to "Exact" * Added synonym "up-regulation of neutrophil mediated killing of bacterium" to GO:0070962 * Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of bacterium of GO:0070962 * Changed synonym scope of GO:0070962 from "Related" to "Exact" * Added synonym "upregulation of neutrophil mediated killing of bacterium" to GO:0070962 * Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of bacterium of GO:0070962 * Changed synonym scope of GO:0070962 from "Related" to "Exact" * Created link GO:0070962 -OBO_REL:is_a-> GO:0070961 * Created link GO:0070962 -positively_regulates-> GO:0070944 * Created link GO:0070962 -OBO_REL:is_a-> GO:0070950 * Assigned namespace "biological_process" to GO:0070962 * [Changed name of GO:0070963 from "null" to "positive regulation of neutrophil mediated killing of gram-negative bacterium", Set definition of GO:0070963 to "Any process that increases the frequency, rate or extent of the directed killing of a gram-negative bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070963, Added definition dbxref GOC:mah to GO:0070963, Added synonym "activation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963, Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of gram-negative bacterium of GO:0070963, Changed synonym scope of GO:0070963 from "Related" to "Narrow", Added synonym "stimulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963, Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963, Changed synonym scope of GO:0070963 from "Related" to "Narrow", Added synonym "up regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963, Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963, Changed synonym scope of GO:0070963 from "Related" to "Exact", Added synonym "up-regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963, Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963, Changed synonym scope of GO:0070963 from "Related" to "Exact", Added synonym "upregulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963, Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963, Changed synonym scope of GO:0070963 from "Related" to "Exact", Created link GO:0070963 -OBO_REL:is_a-> GO:0070951, Created link GO:0070963 -positively_regulates-> GO:0070945, Created link GO:0070963 -OBO_REL:is_a-> GO:0070962, Assigned namespace "biological_process! " to GO: 0070963] * Changed name of GO:0070963 from "null" to "positive regulation of neutrophil mediated killing of gram-negative bacterium" * Set definition of GO:0070963 to "Any process that increases the frequency, rate or extent of the directed killing of a gram-negative bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070963 * Added definition dbxref GOC:mah to GO:0070963 * Added synonym "activation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963 * Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of gram-negative bacterium of GO:0070963 * Changed synonym scope of GO:0070963 from "Related" to "Narrow" * Added synonym "stimulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963 * Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963 * Changed synonym scope of GO:0070963 from "Related" to "Narrow" * Added synonym "up regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963 * Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963 * Changed synonym scope of GO:0070963 from "Related" to "Exact" * Added synonym "up-regulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963 * Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963 * Changed synonym scope of GO:0070963 from "Related" to "Exact" * Added synonym "upregulation of neutrophil mediated killing of gram-negative bacterium" to GO:0070963 * Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of gram-negative bacterium of GO:0070963 * Changed synonym scope of GO:0070963 from "Related" to "Exact" * Created link GO:0070963 -OBO_REL:is_a-> GO:0070951 * Created link GO:0070963 -positively_regulates-> GO:0070945 * Created link GO:0070963 -OBO_REL:is_a-> GO:0070962 * Assigned namespace "biological_process" to GO:0070963 * [Changed name of GO:0070964 from "null" to "positive regulation of neutrophil mediated killing of gram-positive bacterium", Set definition of GO:0070964 to "Any process that increases the frequency, rate or extent of the directed killing of a gram-positive bacterium by a neutrophil.", Added definition dbxref GOC:add to GO:0070964, Added definition dbxref GOC:mah to GO:0070964, Added synonym "activation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964, Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of gram-positive bacterium of GO:0070964, Changed synonym scope of GO:0070964 from "Related" to "Narrow", Added synonym "stimulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964, Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964, Changed synonym scope of GO:0070964 from "Related" to "Narrow", Added synonym "up regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964, Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964, Changed synonym scope of GO:0070964 from "Related" to "Exact", Added synonym "up-regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964, Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964, Changed synonym scope of GO:0070964 from "Related" to "Exact", Added synonym "upregulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964, Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964, Changed synonym scope of GO:0070964 from "Related" to "Exact", Created link GO:0070964 -OBO_REL:is_a-> GO:0070962, Created link GO:0070964 -OBO_REL:is_a-> GO:0070952, Created link GO:0070964 -positively_regulates-> GO:0070946, Assigned namespace "biological_process! " to GO: 0070964] * Changed name of GO:0070964 from "null" to "positive regulation of neutrophil mediated killing of gram-positive bacterium" * Set definition of GO:0070964 to "Any process that increases the frequency, rate or extent of the directed killing of a gram-positive bacterium by a neutrophil." * Added definition dbxref GOC:add to GO:0070964 * Added definition dbxref GOC:mah to GO:0070964 * Added synonym "activation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964 * Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of gram-positive bacterium of GO:0070964 * Changed synonym scope of GO:0070964 from "Related" to "Narrow" * Added synonym "stimulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964 * Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964 * Changed synonym scope of GO:0070964 from "Related" to "Narrow" * Added synonym "up regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964 * Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964 * Changed synonym scope of GO:0070964 from "Related" to "Exact" * Added synonym "up-regulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964 * Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964 * Changed synonym scope of GO:0070964 from "Related" to "Exact" * Added synonym "upregulation of neutrophil mediated killing of gram-positive bacterium" to GO:0070964 * Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of gram-positive bacterium of GO:0070964 * Changed synonym scope of GO:0070964 from "Related" to "Exact" * Created link GO:0070964 -OBO_REL:is_a-> GO:0070962 * Created link GO:0070964 -OBO_REL:is_a-> GO:0070952 * Created link GO:0070964 -positively_regulates-> GO:0070946 * Assigned namespace "biological_process" to GO:0070964 * [Changed name of GO:0070965 from "null" to "positive regulation of neutrophil mediated killing of fungus", Set definition of GO:0070965 to "Any process that increases the frequency, rate or extent of the directed killing of a fungal cell by a neutrophil.", Added definition dbxref GOC:add to GO:0070965, Added definition dbxref GOC:mah to GO:0070965, Added synonym "activation of neutrophil mediated killing of fungus" to GO:0070965, Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of fungus of GO:0070965, Changed synonym scope of GO:0070965 from "Related" to "Narrow", Added synonym "stimulation of neutrophil mediated killing of fungus" to GO:0070965, Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of fungus of GO:0070965, Changed synonym scope of GO:0070965 from "Related" to "Narrow", Added synonym "up regulation of neutrophil mediated killing of fungus" to GO:0070965, Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of fungus of GO:0070965, Changed synonym scope of GO:0070965 from "Related" to "Exact", Added synonym "up-regulation of neutrophil mediated killing of fungus" to GO:0070965, Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of fungus of GO:0070965, Changed synonym scope of GO:0070965 from "Related" to "Exact", Added synonym "upregulation of neutrophil mediated killing of fungus" to GO:0070965, Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of fungus of GO:0070965, Changed synonym scope of GO:0070965 from "Related" to "Exact", Created link GO:0070965 -OBO_REL:is_a-> GO:0070953, Created link GO:0070965 -OBO_REL:is_a-> GO:0070961, Created link GO:0070965 -positively_regulates-> GO:0070947, Assigned namespace "biological_process" to GO:0070965] * Changed name of GO:0070965 from "null" to "positive regulation of neutrophil mediated killing of fungus" * Set definition of GO:0070965 to "Any process that increases the frequency, rate or extent of the directed killing of a fungal cell by a neutrophil." * Added definition dbxref GOC:add to GO:0070965 * Added definition dbxref GOC:mah to GO:0070965 * Added synonym "activation of neutrophil mediated killing of fungus" to GO:0070965 * Added general dbxref GOC:mah to synonym activation of neutrophil mediated killing of fungus of GO:0070965 * Changed synonym scope of GO:0070965 from "Related" to "Narrow" * Added synonym "stimulation of neutrophil mediated killing of fungus" to GO:0070965 * Added general dbxref GOC:mah to synonym stimulation of neutrophil mediated killing of fungus of GO:0070965 * Changed synonym scope of GO:0070965 from "Related" to "Narrow" * Added synonym "up regulation of neutrophil mediated killing of fungus" to GO:0070965 * Added general dbxref GOC:mah to synonym up regulation of neutrophil mediated killing of fungus of GO:0070965 * Changed synonym scope of GO:0070965 from "Related" to "Exact" * Added synonym "up-regulation of neutrophil mediated killing of fungus" to GO:0070965 * Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of fungus of GO:0070965 * Changed synonym scope of GO:0070965 from "Related" to "Exact" * Added synonym "upregulation of neutrophil mediated killing of fungus" to GO:0070965 * Added general dbxref GOC:mah to synonym upregulation of neutrophil mediated killing of fungus of GO:0070965 * Changed synonym scope of GO:0070965 from "Related" to "Exact" * Created link GO:0070965 -OBO_REL:is_a-> GO:0070953 * Created link GO:0070965 -OBO_REL:is_a-> GO:0070961 * Created link GO:0070965 -positively_regulates-> GO:0070947 * Assigned namespace "biological_process" to GO:0070965 * [Changed name of GO:0070966 from "null" to "nuclear-transcribed mRNA catabolic process, no-go decay", Set definition of GO:0070966 to "The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation.", Added definition dbxref GOC:jp to GO:0070966, Added definition dbxref PMID:16554824 to GO:0070966, Added synonym "no-go decay" to GO:0070966, Added general dbxref GOC:jp to synonym no-go decay of GO:0070966, Changed synonym scope of GO:0070966 from "Related" to "Exact", Added synonym "no-go mRNA decay" to GO:0070966, Added general dbxref GOC:jp to synonym no-go mRNA decay of GO:0070966, Changed synonym scope of GO:0070966 from "Related" to "Exact", Added synonym "nuclear-transcribed mRNA breakdown, no-go decay" to GO:0070966, Added general dbxref GOC:jp to synonym nuclear-transcribed mRNA breakdown, no-go decay of GO:0070966, Changed synonym scope of GO:0070966 from "Related" to "Exact", Added synonym "nuclear-transcribed mRNA catabolism, no-go decay" to GO:0070966, Added general dbxref GOC:jp to synonym nuclear-transcribed mRNA catabolism, no-go decay of GO:0070966, Changed synonym scope of GO:0070966 from "Related" to "Exact", Added synonym "nuclear-transcribed mRNA degradation, no-go decay" to GO:0070966, Added general dbxref GOC:jp to synonym nuclear-transcribed mRNA degradation, no-go decay of GO:0070966, Changed synonym scope of GO:0070966 from "Related" to "Exact", Created link GO:0070966 -OBO_REL:is_a-> GO:0000956, Assigned namespace "biological_process" to GO:0070966] * Changed name of GO:0070966 from "null" to "nuclear-transcribed mRNA catabolic process, no-go decay" * Set definition of GO:0070966 to "The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation." * Added definition dbxref GOC:jp to GO:0070966 * Added definition dbxref PMID:16554824 to GO:0070966 * Added synonym "no-go decay" to GO:0070966 * Added general dbxref GOC:jp to synonym no-go decay of GO:0070966 * Changed synonym scope of GO:0070966 from "Related" to "Exact" * Added synonym "no-go mRNA decay" to GO:0070966 * Added general dbxref GOC:jp to synonym no-go mRNA decay of GO:0070966 * Changed synonym scope of GO:0070966 from "Related" to "Exact" * Added synonym "nuclear-transcribed mRNA breakdown, no-go decay" to GO:0070966 * Added general dbxref GOC:jp to synonym nuclear-transcribed mRNA breakdown, no-go decay of GO:0070966 * Changed synonym scope of GO:0070966 from "Related" to "Exact" * Added synonym "nuclear-transcribed mRNA catabolism, no-go decay" to GO:0070966 * Added general dbxref GOC:jp to synonym nuclear-transcribed mRNA catabolism, no-go decay of GO:0070966 * Changed synonym scope of GO:0070966 from "Related" to "Exact" * Added synonym "nuclear-transcribed mRNA degradation, no-go decay" to GO:0070966 * Added general dbxref GOC:jp to synonym nuclear-transcribed mRNA degradation, no-go decay of GO:0070966 * Changed synonym scope of GO:0070966 from "Related" to "Exact" * Created link GO:0070966 -OBO_REL:is_a-> GO:0000956 * Assigned namespace "biological_process" to GO:0070966 * Changed name of GO:0021937 from "Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation" to "cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation" * Deleted GO:0030855 --part_of--> GO:0002009 * Created link GO:0030855 -part_of-> GO:0060429 * Deleted GO:0045446 --OBO_REL:is_a--> GO:0030154 * Created link GO:0045446 -part_of-> GO:0003158 * Created link GO:0045446 -OBO_REL:is_a-> GO:0030855 * Changed definition of GO:0048505 from "The process controlling the activation and/or rate at which relatively unspecialized cells acquire specialized features. Any process that modulates the rate, frequency or extent of the XXX at a consistent predetermined time point during its development." to "The process controlling the activation and/or rate at which relatively unspecialized cells acquire specialized features. Any process that modulates the rate, frequency or extent of the XXX at a consistent predetermined time point during its development." * Changed definition of GO:0055011 from "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell in the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that allows blood to return to the organ." to "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell in the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that receives blood into the organ." * Changed definition of GO:0055012 from "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ." to "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood out of the organ." * Changed definition of GO:0055014 from "The process whose specific outcome is the progression of an atrial cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that allows blood to return to the organ." to "The process whose specific outcome is the progression of an atrial cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that receives blood into the organ." * Changed definition of GO:0055015 from "The process whose specific outcome is the progression of a ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood away from the organ." to "The process whose specific outcome is the progression of a ventricular cardiac muscle cell over time, from its formation to the mature state. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The ventricle is the part of the heart that pumps blood out of the organ." * Deleted GO:0060214 --part_of--> GO:0007507 * Created link GO:0060214 -part_of-> GO:0003160 * Changed definition of GO:0060317 from "A transition where a cardiac endothelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." * Changed definition of GO:0060921 from "The process whereby a relatively unspecialized cell acquires specialized features of an SA node cell. SA node cells are pacemaker cells that are found in the sino-atrial node." to "The process whereby a relatively unspecialized cell acquires specialized features of an SA node cell. SA node cells are pacemaker cells that are found in the sinoatrial node." * Deleted synonym "sino-atrial node cell differentiation" from GO:0060921 * Added synonym "sinoatrial node cell differentiation" to GO:0060921 * Added general dbxref GOC:mtg_heart to synonym sinoatrial node cell differentiation of GO:0060921 * Changed synonym scope of GO:0060921 from "Related" to "Exact" * Created link GO:0060921 -part_of-> GO:0003163 * Changed definition of GO:0060922 from "The process whereby a relatively unspecialized cell acquires specialized features of an AV node cell. AV node cells are pacemaker cells that are found in the atrial-ventricular node." to "The process whereby a relatively unspecialized cell acquires specialized features of an AV node cell. AV node cells are pacemaker cells that are found in the atrioventricular node." * Deleted synonym "atrial-ventricular node cell differentiation" from GO:0060922 * Added synonym "atrioventricular node cell differentiation" to GO:0060922 * Added general dbxref GOC:mtg_heart to synonym atrioventricular node cell differentiation of GO:0060922 * Created link GO:0060922 -part_of-> GO:0003162 * Deleted synonym "atrial-ventricular node cell development" from GO:0060928 * Added synonym "atrioventricular node cell development" to GO:0060928 * Added general dbxref GOC:mtg_heart to synonym atrioventricular node cell development of GO:0060928 * Changed synonym scope of GO:0060928 from "Related" to "Exact" * Deleted synonym "atrial-ventricular node cell fate commitment" from GO:0060929 * Added synonym "atrioventricular node cell fate commitment" to GO:0060929 * Added general dbxref GOC:mtg_heart to synonym atrioventricular node cell fate commitment of GO:0060929 * Changed synonym scope of GO:0060929 from "Related" to "Exact" * Changed definition of GO:0060930 from "The commitment of cells to SA node cell fates and their capacity to differentiate into SA node cells. SA node cells are pacemaker cells that are found in the sino-atrial node." to "The commitment of cells to SA node cell fates and their capacity to differentiate into SA node cells. SA node cells are pacemaker cells that are found in the sinoatrial node." * Deleted synonym "sino-atrial node cell commitment" from GO:0060930 * Added synonym "sinoatrial node cell commitment" to GO:0060930 * Added general dbxref GOC:mtg_heart to synonym sinoatrial node cell commitment of GO:0060930 * Changed synonym scope of GO:0060930 from "Related" to "Exact" * Changed definition of GO:0060931 from "The process whose specific outcome is the progression of an SA node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sino-atrial node." to "The process whose specific outcome is the progression of an SA node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sinoatrial node." * Deleted synonym "sino-atrial node cell development" from GO:0060931 * Added synonym "sinoatrial node cell development" to GO:0060931 * Added general dbxref GOC:mtg_heart to synonym sinoatrial node cell development of GO:0060931 * Changed synonym scope of GO:0060931 from "Related" to "Exact" * Changed name of GO:0060932 from "His-Purkinje cell differentiation" to "His-Purkinje system cell differentiation" * Changed definition of GO:0060932 from "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers that regulate cardiac muscle contraction in the ventricles." to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers regulate cardiac muscle contraction in the ventricles." * Deleted GO:0060932 --OBO_REL:is_a--> GO:0035051 * Created link GO:0060932 -OBO_REL:is_a-> GO:0055007 * Created link GO:0060932 -part_of-> GO:0003164 * Changed name of GO:0060933 from "His-Purkinje cell development" to "His-Purkinje system cell development" * Changed name of GO:0060934 from "His-Purkinje cell fate commitment" to "His-Purkinje system cell fate commitment" * Changed definition of GO:0060956 from "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart." to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart. The endocardium is the innermost layer of tissue of the heart, and lines the heart chambers." * Created link GO:0060956 -part_of-> GO:0003157 From gocvs at genome.stanford.edu Fri Oct 2 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 2 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/02/2009 Message-ID: <200910030430.n934UCuE000501@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.814 by 1.816 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070967 * Created object of type obo:TERM with id GO:0070968 * Created object of type obo:TERM with id GO:0070969 * Created object of type obo:TERM with id GO:0070970 * Created object of type obo:TERM with id GO:0070971 * Created object of type obo:TERM with id GO:0070972 * Created object of type obo:TERM with id GO:0070973 * Created object of type obo:TERM with id GO:0070974 * Created object of type obo:TERM with id GO:0070975 * Created object of type obo:TERM with id GO:0070976 * [Changed name of GO:0070967 from "null" to "coenzyme F420 binding", Set definition of GO:0070967 to "Interacting selectively and non-covalently with F420, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.", Added definition dbxref ChEBI:16848 to GO:0070967, Added definition dbxref GOC:dh to GO:0070967, Created link GO:0070967 -OBO_REL:is_a-> GO:0050662, Assigned namespace "molecular_function" to GO:0070967] * Changed name of GO:0070967 from "null" to "coenzyme F420 binding" * Set definition of GO:0070967 to "Interacting selectively and non-covalently with F420, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes." * Added definition dbxref ChEBI:16848 to GO:0070967 * Added definition dbxref GOC:dh to GO:0070967 * Created link GO:0070967 -OBO_REL:is_a-> GO:0050662 * Assigned namespace "molecular_function" to GO:0070967 * [Changed name of GO:0070968 from "null" to "pyrroloquinoline quinone binding", Set definition of GO:0070968 to "Interacting selectively and non-covalently with pyrroloquinoline quinone, PQQ, the coenzyme or the prosthetic group of certain alcohol dehydrogenases and glucose dehydrogenases.", Added definition dbxref ChEBI:18315 to GO:0070968, Added definition dbxref GOC:dh to GO:0070968, Added synonym "PQQ binding" to GO:0070968, Added general dbxref GOC:dh to synonym PQQ binding of GO:0070968, Changed synonym scope of GO:0070968 from "Related" to "Exact", Created link GO:0070968 -OBO_REL:is_a-> GO:0048038, Assigned namespace "molecular_function" to GO:0070968] * Changed name of GO:0070968 from "null" to "pyrroloquinoline quinone binding" * Set definition of GO:0070968 to "Interacting selectively and non-covalently with pyrroloquinoline quinone, PQQ, the coenzyme or the prosthetic group of certain alcohol dehydrogenases and glucose dehydrogenases." * Added definition dbxref ChEBI:18315 to GO:0070968 * Added definition dbxref GOC:dh to GO:0070968 * Added synonym "PQQ binding" to GO:0070968 * Added general dbxref GOC:dh to synonym PQQ binding of GO:0070968 * Changed synonym scope of GO:0070968 from "Related" to "Exact" * Created link GO:0070968 -OBO_REL:is_a-> GO:0048038 * Assigned namespace "molecular_function" to GO:0070968 * [Changed name of GO:0070969 from "null" to "ULK1-ATG13-FIP200 complex", Set definition of GO:0070969 to "A protein complex taht is essential for mammalian autophagy, and consists of at least 3 proteins: ULK1, ATG13 and RB1CC1(FIP200). This complex is the mammalian counterpart of Atg1-Atg13-Atg17 in yeast.", Added definition dbxref PMID:19211835 to GO:0070969, Added definition dbxref PMID:19258318 to GO:0070969, Added definition dbxref PMID:19597335 to GO:0070969, Added synonym "ULK1-ATG13-RB1CC1 complex" to GO:0070969, Added general dbxref GOC:curators to synonym ULK1-ATG13-RB1CC1 complex of GO:0070969, Changed synonym scope of GO:0070969 from "Related" to "Exact", Created link GO:0070969 -OBO_REL:is_a-> GO:0043234, Created link GO:0070969 -OBO_REL:is_a-> GO:0044444, Assigned namespace "cellular_component" to GO:0070969] * Changed name of GO:0070969 from "null" to "ULK1-ATG13-FIP200 complex" * Set definition of GO:0070969 to "A protein complex taht is essential for mammalian autophagy, and consists of at least 3 proteins: ULK1, ATG13 and RB1CC1(FIP200). This complex is the mammalian counterpart of Atg1-Atg13-Atg17 in yeast." * Added definition dbxref PMID:19211835 to GO:0070969 * Added definition dbxref PMID:19258318 to GO:0070969 * Added definition dbxref PMID:19597335 to GO:0070969 * Added synonym "ULK1-ATG13-RB1CC1 complex" to GO:0070969 * Added general dbxref GOC:curators to synonym ULK1-ATG13-RB1CC1 complex of GO:0070969 * Changed synonym scope of GO:0070969 from "Related" to "Exact" * Created link GO:0070969 -OBO_REL:is_a-> GO:0043234 * Created link GO:0070969 -OBO_REL:is_a-> GO:0044444 * Assigned namespace "cellular_component" to GO:0070969 * [Changed name of GO:0070970 from "null" to "interleukin-2 secretion", Set definition of GO:0070970 to "The regulated release of interleukin-2 from a cell or group of cells.", Added definition dbxref GOC:mah to GO:0070970, Added definition dbxref PMID:16930574 to GO:0070970, Added synonym "IL-2 secretion" to GO:0070970, Added general dbxref GOC:mah to synonym IL-2 secretion of GO:0070970, Changed synonym scope of GO:0070970 from "Related" to "Exact", Created link GO:0070970 -OBO_REL:is_a-> GO:0050663, Created link GO:0070970 -OBO_REL:is_a-> GO:0032623, Assigned namespace "biological_process" to GO:0070970] * Changed name of GO:0070970 from "null" to "interleukin-2 secretion" * Set definition of GO:0070970 to "The regulated release of interleukin-2 from a cell or group of cells." * Added definition dbxref GOC:mah to GO:0070970 * Added definition dbxref PMID:16930574 to GO:0070970 * Added synonym "IL-2 secretion" to GO:0070970 * Added general dbxref GOC:mah to synonym IL-2 secretion of GO:0070970 * Changed synonym scope of GO:0070970 from "Related" to "Exact" * Created link GO:0070970 -OBO_REL:is_a-> GO:0050663 * Created link GO:0070970 -OBO_REL:is_a-> GO:0032623 * Assigned namespace "biological_process" to GO:0070970 * [Changed name of GO:0070971 from "null" to "endoplasmic reticulum exit site", Set definition of GO:0070971 to "An endoplasmic reticulum part at which COPII-coated vesicles are produced.", Added definition dbxref PMID:15623529 to GO:0070971, Added definition dbxref PMID:16957052 to GO:0070971, Added synonym "ER exit site" to GO:0070971, Added general dbxref GOC:mah to synonym ER exit site of GO:0070971, Changed synonym scope of GO:0070971 from "Related" to "Exact", Added synonym "transitional ER" to GO:0070971, Added general dbxref PMID:15623529 to synonym transitional ER of GO:0070971, Changed synonym scope of GO:0070971 from "Related" to "Exact", Created link GO:0070971 -OBO_REL:is_a-> GO:0044432, Assigned namespace "cellular_component" to GO:0070971] * Changed name of GO:0070971 from "null" to "endoplasmic reticulum exit site" * Set definition of GO:0070971 to "An endoplasmic reticulum part at which COPII-coated vesicles are produced." * Added definition dbxref PMID:15623529 to GO:0070971 * Added definition dbxref PMID:16957052 to GO:0070971 * Added synonym "ER exit site" to GO:0070971 * Added general dbxref GOC:mah to synonym ER exit site of GO:0070971 * Changed synonym scope of GO:0070971 from "Related" to "Exact" * Added synonym "transitional ER" to GO:0070971 * Added general dbxref PMID:15623529 to synonym transitional ER of GO:0070971 * Changed synonym scope of GO:0070971 from "Related" to "Exact" * Created link GO:0070971 -OBO_REL:is_a-> GO:0044432 * Assigned namespace "cellular_component" to GO:0070971 * [Changed name of GO:0070972 from "null" to "protein localization in endoplasmic reticulum", Set definition of GO:0070972 to "A process by which a protein is transported to, or maintained in, a location within the endoplasmic reticulum.", Added definition dbxref GOC:mah to GO:0070972, Added synonym "protein localization in ER" to GO:0070972, Added general dbxref GOC:mah to synonym protein localization in ER of GO:0070972, Changed synonym scope of GO:0070972 from "Related" to "Exact", Created link GO:0070972 -OBO_REL:is_a-> GO:0033365, Assigned namespace "biological_process" to GO:0070972] * Changed name of GO:0070972 from "null" to "protein localization in endoplasmic reticulum" * Set definition of GO:0070972 to "A process by which a protein is transported to, or maintained in, a location within the endoplasmic reticulum." * Added definition dbxref GOC:mah to GO:0070972 * Added synonym "protein localization in ER" to GO:0070972 * Added general dbxref GOC:mah to synonym protein localization in ER of GO:0070972 * Changed synonym scope of GO:0070972 from "Related" to "Exact" * Created link GO:0070972 -OBO_REL:is_a-> GO:0033365 * Assigned namespace "biological_process" to GO:0070972 * [Changed name of GO:0070973 from "null" to "protein localization to endoplasmic reticulum exit site", Set definition of GO:0070973 to "A process by which a protein is transported to, or maintained in, a location at an endoplasmic reticulum exit site.", Added definition dbxref GOC:mah to GO:0070973, Added synonym "protein localization to ER exit site" to GO:0070973, Added general dbxref GOC:mah to synonym protein localization to ER exit site of GO:0070973, Changed synonym scope of GO:0070973 from "Related" to "Exact", Created link GO:0070973 -OBO_REL:is_a-> GO:0070972, Assigned namespace "gene_ontology" to GO:0070973] * Changed name of GO:0070973 from "null" to "protein localization to endoplasmic reticulum exit site" * Set definition of GO:0070973 to "A process by which a protein is transported to, or maintained in, a location at an endoplasmic reticulum exit site." * Added definition dbxref GOC:mah to GO:0070973 * Added synonym "protein localization to ER exit site" to GO:0070973 * Added general dbxref GOC:mah to synonym protein localization to ER exit site of GO:0070973 * Changed synonym scope of GO:0070973 from "Related" to "Exact" * Created link GO:0070973 -OBO_REL:is_a-> GO:0070972 * Assigned namespace "gene_ontology" to GO:0070973 * [Changed name of GO:0070974 from "null" to "POU domain binding", Set definition of GO:0070974 to "Interacting selectively and non-covalently with a POU domain of a protein. The POU domain is a bipartite DNA binding domain composed of two subunits separated by a non-conserved region of 15-55 amino acids; it is found in several eukaryotic transcription factors.", Added definition dbxref GOC:mah to GO:0070974, Added definition dbxref GOC:yaf to GO:0070974, Added definition dbxref InterPro:IPR000327 to GO:0070974, Created link GO:0070974 -OBO_REL:is_a-> GO:0019904, Assigned namespace "molecular_function" to GO:0070974] * Changed name of GO:0070974 from "null" to "POU domain binding" * Set definition of GO:0070974 to "Interacting selectively and non-covalently with a POU domain of a protein. The POU domain is a bipartite DNA binding domain composed of two subunits separated by a non-conserved region of 15-55 amino acids; it is found in several eukaryotic transcription factors." * Added definition dbxref GOC:mah to GO:0070974 * Added definition dbxref GOC:yaf to GO:0070974 * Added definition dbxref InterPro:IPR000327 to GO:0070974 * Created link GO:0070974 -OBO_REL:is_a-> GO:0019904 * Assigned namespace "molecular_function" to GO:0070974 * [Changed name of GO:0070975 from "null" to "FHA domain binding", Set definition of GO:0070975 to "Interacting selectively and non-covalently with a FHA domain of a protein. The FHA domain is a phosphopeptide recognition domain found in many regulatory proteins, and consists of pproximately 80-100 amino acid residues folded into an 11-stranded beta sandwich.", Added definition dbxref GOC:mah to GO:0070975, Added definition dbxref InterPro:IPR0000253 to GO:0070975, Added synonym "Forkhead-associated domain binding" to GO:0070975, Added general dbxref InterPro:IPR0000253 to synonym Forkhead-associated domain binding of GO:0070975, Changed synonym scope of GO:0070975 from "Related" to "Exact", Created link GO:0070975 -OBO_REL:is_a-> GO:0019904, Assigned namespace "molecular_function" to GO:0070975] * Changed name of GO:0070975 from "null" to "FHA domain binding" * Set definition of GO:0070975 to "Interacting selectively and non-covalently with a FHA domain of a protein. The FHA domain is a phosphopeptide recognition domain found in many regulatory proteins, and consists of pproximately 80-100 amino acid residues folded into an 11-stranded beta sandwich." * Added definition dbxref GOC:mah to GO:0070975 * Added definition dbxref InterPro:IPR0000253 to GO:0070975 * Added synonym "Forkhead-associated domain binding" to GO:0070975 * Added general dbxref InterPro:IPR0000253 to synonym Forkhead-associated domain binding of GO:0070975 * Changed synonym scope of GO:0070975 from "Related" to "Exact" * Created link GO:0070975 -OBO_REL:is_a-> GO:0019904 * Assigned namespace "molecular_function" to GO:0070975 * [Changed name of GO:0070976 from "null" to "TIR domain binding", Set definition of GO:0070976 to "Interacting selectively and non-covalently with a Toll-Interleukin receptor (TIR) domain of a protein. The TIR domain is an intracellular 200 residue domain that is found in the Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components.", Added definition dbxref GOC:mah to GO:0070976, Added definition dbxref InterPro:IPR0000157 to GO:0070976, Added synonym "Toll-Interleukin receptor domain binding" to GO:0070976, Added general dbxref InterPro:IPR0000157 to synonym Toll-Interleukin receptor domain binding of GO:0070976, Changed synonym scope of GO:0070976 from "Related" to "Exact", Created link GO:0070976 -OBO_REL:is_a-> GO:0019904, Assigned namespace "molecular_function" to GO:0070976] * Changed name of GO:0070976 from "null" to "TIR domain binding" * Set definition of GO:0070976 to "Interacting selectively and non-covalently with a Toll-Interleukin receptor (TIR) domain of a protein. The TIR domain is an intracellular 200 residue domain that is found in the Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components." * Added definition dbxref GOC:mah to GO:0070976 * Added definition dbxref InterPro:IPR0000157 to GO:0070976 * Added synonym "Toll-Interleukin receptor domain binding" to GO:0070976 * Added general dbxref InterPro:IPR0000157 to synonym Toll-Interleukin receptor domain binding of GO:0070976 * Changed synonym scope of GO:0070976 from "Related" to "Exact" * Created link GO:0070976 -OBO_REL:is_a-> GO:0019904 * Assigned namespace "molecular_function" to GO:0070976 * Deleted GO:0070128 --OBO_REL:is_a--> GO:0001718 * Destroyed object GO:0001718 * Deleted GO:0001775 --OBO_REL:is_a--> GO:0032501 * Created link GO:0001775 -OBO_REL:is_a-> GO:0009987 * Created link GO:0003156 -OBO_REL:is_a-> GO:0051239 * added secondary id GO:0001718 to GO:0004479 * added secondary id GO:0070128 to GO:0004479 * Added synonym "conversion of met-tRNAf to fmet-tRNA" to GO:0004479 * Added general dbxref GO:curators to synonym conversion of met-tRNAf to fmet-tRNA of GO:0004479 * Added synonym "conversion of mitochondrial met-tRNAf to fmet-tRNA" to GO:0004479 * Added general dbxref GO:curators to synonym conversion of mitochondrial met-tRNAf to fmet-tRNA of GO:0004479 * Added synonym "mitochondrial N-terminal peptidyl-methionine N-formylation" to GO:0004479 * Added general dbxref GO:curators to synonym mitochondrial N-terminal peptidyl-methionine N-formylation of GO:0004479 * Added synonym "N-terminal peptidyl-methionine N-formylation" to GO:0004479 * Added general dbxref GO:curators to synonym N-terminal peptidyl-methionine N-formylation of GO:0004479 * Created link GO:0004479 -part_of-> GO:0006413 * Deleted GO:0009758 --OBO_REL:is_a--> GO:0008152 * Created link GO:0009758 -OBO_REL:is_a-> GO:0009743 * Added synonym "cell morphogenesis by unidimensional growth" to GO:0009826 * Added general dbxref GOC:tb to synonym cell morphogenesis by unidimensional growth of GO:0009826 * Added general dbxref GOC:dph to synonym cell morphogenesis by unidimensional growth of GO:0009826 * Changed synonym scope of GO:0009826 from "Related" to "Exact" * Created link GO:0009826 -OBO_REL:is_a-> GO:0000902 * Created link GO:0010359 -OBO_REL:is_a-> GO:0044070 * Deleted GO:0015075 --part_of--> GO:0006811 * Created link GO:0015075 -part_of-> GO:0034220 * Created link GO:0032412 -OBO_REL:is_a-> GO:0034765 * Deleted GO:0043610 --OBO_REL:is_a--> GO:0051239 * Created link GO:0043610 -OBO_REL:is_a-> GO:0048583 * Created link GO:0045047 -part_of-> GO:0070972 * Deleted GO:0045601 --OBO_REL:is_a--> GO:0045595 * Created link GO:0045601 -OBO_REL:is_a-> GO:0030856 * Deleted GO:0045602 --OBO_REL:is_a--> GO:0045596 * Created link GO:0045602 -OBO_REL:is_a-> GO:0030857 * Deleted GO:0045603 --OBO_REL:is_a--> GO:0045597 * Created link GO:0045603 -OBO_REL:is_a-> GO:0030858 * Created link GO:0045704 -OBO_REL:is_a-> GO:0003156 * Deleted GO:0048583 --OBO_REL:is_a--> GO:0070920 * Created link GO:0050701 -OBO_REL:is_a-> GO:0032612 * Created link GO:0050704 -OBO_REL:is_a-> GO:0032652 * Created link GO:0050711 -OBO_REL:is_a-> GO:0032692 * Created link GO:0050712 -OBO_REL:is_a-> GO:0032690 * Created link GO:0050713 -OBO_REL:is_a-> GO:0032691 * Created link GO:0050716 -OBO_REL:is_a-> GO:0032732 * Created link GO:0050717 -OBO_REL:is_a-> GO:0032730 * Created link GO:0050718 -OBO_REL:is_a-> GO:0032731 * Created link GO:0051510 -OBO_REL:is_a-> GO:0048638 * Created link GO:0051510 -OBO_REL:is_a-> GO:0022604 * Created link GO:0051511 -OBO_REL:is_a-> GO:0048640 * Created link GO:0051512 -OBO_REL:is_a-> GO:0048639 * Created link GO:0060685 -OBO_REL:is_a-> GO:0003156 * Destroyed object GO:0070128 * Created link GO:0070920 -OBO_REL:is_a-> GO:0048583 * Changed definition of GO:0070948 from "The directed killing of a target cell by a neutrophil." to "Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a target cell, the directed killing of a target cell by a neutrophil." * Changed definition of GO:0070949 from "The directed killing of a symbiont target cell by a neutrophil." to "Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a symbiont cell, the directed killing of a symbiont target cell by a neutrophil." * Created link GO:0070949 -OBO_REL:is_a-> GO:0051709 * Created link GO:0070949 -OBO_REL:is_a-> GO:0043903 * Changed definition of GO:0070950 from "The directed killing of a bacterium by a neutrophil." to "Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a bacterium, the directed killing of a bacterium by a neutrophil." * Changed definition of GO:0070951 from "The directed killing of a gram-negative bacterium by a neutrophil." to "Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a gram-negative bacterium, the directed killing of a gram-negative bacterium by a neutrophil." * Changed definition of GO:0070952 from "The directed killing of a gram-positive bacterium by a neutrophil." to "Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a gram-positive bacterium, the directed killing of a gram-positive bacterium by a neutrophil." * Changed definition of GO:0070953 from "The directed killing of a fungal cell by a neutrophil." to "Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a fungal cell, the directed killing of a fungal cell by a neutrophil." * Created link GO:0070955 -OBO_REL:is_a-> GO:0051711 * Created link GO:0070961 -OBO_REL:is_a-> GO:0051712 * Deleted GO:0090065 --OBO_REL:is_a--> GO:0048583 From gocvs at genome.stanford.edu Sat Oct 3 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Sat, 3 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/03/2009 Message-ID: <200910040430.n944UCMS025119@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.816 by 1.817 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) From gocvs at genome.stanford.edu Mon Oct 5 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 5 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/05/2009 Message-ID: <200910060430.n964UC72006488@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.817 by 1.819 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060961 * Created object of type obo:TERM with id GO:0060962 * Created object of type obo:TERM with id GO:0060963 * Created object of type obo:TERM with id GO:0060964 * Created object of type obo:TERM with id GO:0060965 * Created object of type obo:TERM with id GO:0060966 * Created object of type obo:TERM with id GO:0060967 * Created object of type obo:TERM with id GO:0060968 * Created object of type obo:TERM with id GO:0060969 * Created object of type obo:TERM with id GO:0070977 * [Changed name of GO:0060961 from "null" to "phospholipase D inhibitor activity", Set definition of GO:0060961 to "Stops, prevents or reduces the activity of a phospholipase D, an enzyme that catalyzes the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate.", Added definition dbxref GOC:dph to GO:0060961, Added definition dbxref GOC:tb to GO:0060961, Created link GO:0060961 -negatively_regulates-> GO:0004630, Created link GO:0060961 -OBO_REL:is_a-> GO:0004859, Assigned namespace "molecular_function" to GO:0060961] * Changed name of GO:0060961 from "null" to "phospholipase D inhibitor activity" * Set definition of GO:0060961 to "Stops, prevents or reduces the activity of a phospholipase D, an enzyme that catalyzes the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate." * Added definition dbxref GOC:dph to GO:0060961 * Added definition dbxref GOC:tb to GO:0060961 * Created link GO:0060961 -negatively_regulates-> GO:0004630 * Created link GO:0060961 -OBO_REL:is_a-> GO:0004859 * Assigned namespace "molecular_function" to GO:0060961 * [Changed name of GO:0060962 from "null" to "regulation of ribosomal protein gene transcription from RNA polymerase II promoter", Set definition of GO:0060962 to "Any process that modulates the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter.", Added definition dbxref GOC:dph to GO:0060962, Added definition dbxref GOC:tb to GO:0060962, Created link GO:0060962 -OBO_REL:is_a-> GO:0010551, Assigned namespace "biological_process" to GO:0060962] * Changed name of GO:0060962 from "null" to "regulation of ribosomal protein gene transcription from RNA polymerase II promoter" * Set definition of GO:0060962 to "Any process that modulates the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter." * Added definition dbxref GOC:dph to GO:0060962 * Added definition dbxref GOC:tb to GO:0060962 * Created link GO:0060962 -OBO_REL:is_a-> GO:0010551 * Assigned namespace "biological_process" to GO:0060962 * [Changed name of GO:0060963 from "null" to "positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter", Set definition of GO:0060963 to "Any process that increases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter.", Added definition dbxref GOC:dph to GO:0060963, Added definition dbxref GOC:tb to GO:0060963, Created link GO:0060963 -OBO_REL:is_a-> GO:0060962, Created link GO:0060963 -OBO_REL:is_a-> GO:0010552, Assigned namespace "biological_process" to GO:0060963] * Changed name of GO:0060963 from "null" to "positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter" * Set definition of GO:0060963 to "Any process that increases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II (Pol II), originating at a Pol II-specific promoter." * Added definition dbxref GOC:dph to GO:0060963 * Added definition dbxref GOC:tb to GO:0060963 * Created link GO:0060963 -OBO_REL:is_a-> GO:0060962 * Created link GO:0060963 -OBO_REL:is_a-> GO:0010552 * Assigned namespace "biological_process" to GO:0060963 * [Changed name of GO:0060964 from "null" to "regulation of gene silencing by miRNA", Set definition of GO:0060964 to "Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression.", Added definition dbxref GOC:dph to GO:0060964, Added definition dbxref GOC:tb to GO:0060964, Created link GO:0060964 -OBO_REL:is_a-> GO:0060966, Created link GO:0060964 -regulates-> GO:0035195, Assigned namespace "biological_process" to GO:0060964] * Changed name of GO:0060964 from "null" to "regulation of gene silencing by miRNA" * Set definition of GO:0060964 to "Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression." * Added definition dbxref GOC:dph to GO:0060964 * Added definition dbxref GOC:tb to GO:0060964 * Created link GO:0060964 -OBO_REL:is_a-> GO:0060966 * Created link GO:0060964 -regulates-> GO:0035195 * Assigned namespace "biological_process" to GO:0060964 * [Changed name of GO:0060965 from "null" to "negative regulation of gene silencing by miRNA", Set definition of GO:0060965 to "Any process that decreases the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression.", Added definition dbxref GOC:dph to GO:0060965, Added definition dbxref GOC:tb to GO:0060965, Created link GO:0060965 -negatively_regulates-> GO:0035195, Created link GO:0060965 -OBO_REL:is_a-> GO:0060967, Created link GO:0060965 -OBO_REL:is_a-> GO:0060964, Assigned namespace "biological_process" to GO:0060965] * Changed name of GO:0060965 from "null" to "negative regulation of gene silencing by miRNA" * Set definition of GO:0060965 to "Any process that decreases the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression." * Added definition dbxref GOC:dph to GO:0060965 * Added definition dbxref GOC:tb to GO:0060965 * Created link GO:0060965 -negatively_regulates-> GO:0035195 * Created link GO:0060965 -OBO_REL:is_a-> GO:0060967 * Created link GO:0060965 -OBO_REL:is_a-> GO:0060964 * Assigned namespace "biological_process" to GO:0060965 * [Changed name of GO:0060966 from "null" to "regulation of gene silencing by RNA", Set definition of GO:0060966 to "Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process by which RNA molecules inactivate expression of target genes.", Added definition dbxref GOC:dph to GO:0060966, Added definition dbxref GOC:tb to GO:0060966, Created link GO:0060966 -regulates-> GO:0031047, Created link GO:0060966 -OBO_REL:is_a-> GO:0060968, Assigned namespace "biological_process" to GO:0060966] * Changed name of GO:0060966 from "null" to "regulation of gene silencing by RNA" * Set definition of GO:0060966 to "Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process by which RNA molecules inactivate expression of target genes." * Added definition dbxref GOC:dph to GO:0060966 * Added definition dbxref GOC:tb to GO:0060966 * Created link GO:0060966 -regulates-> GO:0031047 * Created link GO:0060966 -OBO_REL:is_a-> GO:0060968 * Assigned namespace "biological_process" to GO:0060966 * [Changed name of GO:0060967 from "null" to "negative regulation of gene silencing by RNA", Set definition of GO:0060967 to "Any process that decreases the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process by which RNA molecules inactivate expression of target genes.", Added definition dbxref GOC:dph to GO:0060967, Added definition dbxref GOC:tb to GO:0060967, Created link GO:0060967 -OBO_REL:is_a-> GO:0060966, Created link GO:0060967 -OBO_REL:is_a-> GO:0060969, Created link GO:0060967 -negatively_regulates-> GO:0031047, Assigned namespace "biological_process" to GO:0060967] * Changed name of GO:0060967 from "null" to "negative regulation of gene silencing by RNA" * Set definition of GO:0060967 to "Any process that decreases the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process by which RNA molecules inactivate expression of target genes." * Added definition dbxref GOC:dph to GO:0060967 * Added definition dbxref GOC:tb to GO:0060967 * Created link GO:0060967 -OBO_REL:is_a-> GO:0060966 * Created link GO:0060967 -OBO_REL:is_a-> GO:0060969 * Created link GO:0060967 -negatively_regulates-> GO:0031047 * Assigned namespace "biological_process" to GO:0060967 * [Changed name of GO:0060968 from "null" to "regulation of gene silencing", Set definition of GO:0060968 to "Any process that modulates the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.", Added definition dbxref GOC:dph to GO:0060968, Added definition dbxref GOC:tb to GO:0060968, Created link GO:0060968 -OBO_REL:is_a-> GO:0050794, Created link GO:0060968 -regulates-> GO:0016458, Assigned namespace "biological_process" to GO:0060968] * Changed name of GO:0060968 from "null" to "regulation of gene silencing" * Set definition of GO:0060968 to "Any process that modulates the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation." * Added definition dbxref GOC:dph to GO:0060968 * Added definition dbxref GOC:tb to GO:0060968 * Created link GO:0060968 -OBO_REL:is_a-> GO:0050794 * Created link GO:0060968 -regulates-> GO:0016458 * Assigned namespace "biological_process" to GO:0060968 * [Changed name of GO:0060969 from "null" to "negative regulation of gene silencing", Set definition of GO:0060969 to "Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.", Added definition dbxref GOC:dph to GO:0060969, Added definition dbxref GOC:tb to GO:0060969, Created link GO:0060969 -negatively_regulates-> GO:0016458, Created link GO:0060969 -OBO_REL:is_a-> GO:0060968, Created link GO:0060969 -OBO_REL:is_a-> GO:0048523, Assigned namespace "biological_process" to GO:0060969] * Changed name of GO:0060969 from "null" to "negative regulation of gene silencing" * Set definition of GO:0060969 to "Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation." * Added definition dbxref GOC:dph to GO:0060969 * Added definition dbxref GOC:tb to GO:0060969 * Created link GO:0060969 -negatively_regulates-> GO:0016458 * Created link GO:0060969 -OBO_REL:is_a-> GO:0060968 * Created link GO:0060969 -OBO_REL:is_a-> GO:0048523 * Assigned namespace "biological_process" to GO:0060969 * [Changed name of GO:0070977 from "null" to "bone maturation", Set definition of GO:0070977 to "A developmental process, independent of morphogenetic (shape) change, that is required for bone to attain its fully functional state.", Added definition dbxref GOC:dph to GO:0070977, Added definition dbxref GOC:mah to GO:0070977, Created link GO:0070977 -OBO_REL:is_a-> GO:0021700, Created link GO:0070977 -part_of-> GO:0060348, Assigned namespace "biological_process" to GO:0070977] * Changed name of GO:0070977 from "null" to "bone maturation" * Set definition of GO:0070977 to "A developmental process, independent of morphogenetic (shape) change, that is required for bone to attain its fully functional state." * Added definition dbxref GOC:dph to GO:0070977 * Added definition dbxref GOC:mah to GO:0070977 * Created link GO:0070977 -OBO_REL:is_a-> GO:0021700 * Created link GO:0070977 -part_of-> GO:0060348 * Assigned namespace "biological_process" to GO:0070977 * Changed definition of GO:0000313 from "A ribosome contained within a subcellular organelle." to "A ribosome contained within a subcellular membrane-bounded organelle." * Added definition dbxref GOC:mah to GO:0000313 * Created link GO:0005310 -part_of-> GO:0006835 * Created link GO:0005342 -part_of-> GO:0015849 * Created link GO:0005368 -part_of-> GO:0015734 * Created link GO:0005436 -part_of-> GO:0006814 * Created link GO:0006869 -part_of-> GO:0010876 * Removed GO:0006996 from category goslim_pombe * Changed synonym scope of GO:0006996 from "Exact" to "Related" * Created link GO:0008028 -part_of-> GO:0015718 * Created link GO:0008324 -part_of-> GO:0006812 * Created link GO:0008510 -part_of-> GO:0006814 * Created link GO:0008512 -part_of-> GO:0008272 * Created link GO:0008512 -OBO_REL:is_a-> GO:0015078 * Deleted GO:0008555 --part_of--> GO:0006821 * Created link GO:0009671 -OBO_REL:is_a-> GO:0015078 * Created link GO:0010688 -OBO_REL:is_a-> GO:0060962 * Created link GO:0015078 -part_of-> GO:0015992 * Created link GO:0015108 -part_of-> GO:0006821 * Created link GO:0015123 -part_of-> GO:0006846 * Created link GO:0015124 -part_of-> GO:0015719 * Created link GO:0015125 -part_of-> GO:0015721 * Created link GO:0015126 -part_of-> GO:0015722 * Created link GO:0015127 -part_of-> GO:0015723 * Created link GO:0015129 -part_of-> GO:0015727 * Created link GO:0015130 -part_of-> GO:0015728 * Created link GO:0015131 -part_of-> GO:0015729 * Created link GO:0015132 -part_of-> GO:0015732 * Created link GO:0015135 -part_of-> GO:0015738 * Created link GO:0015137 -part_of-> GO:0015746 * Created link GO:0015138 -part_of-> GO:0015741 * Created link GO:0015139 -part_of-> GO:0015742 * Deleted GO:0015140 --OBO_REL:is_a--> GO:0005310 * Created link GO:0015140 -OBO_REL:is_a-> GO:0015556 * Created link GO:0015140 -part_of-> GO:0015743 * Deleted GO:0015141 --OBO_REL:is_a--> GO:0005310 * Created link GO:0015141 -part_of-> GO:0015744 * Created link GO:0015141 -OBO_REL:is_a-> GO:0015556 * Created link GO:0015142 -part_of-> GO:0006842 * Created link GO:0015296 -OBO_REL:is_a-> GO:0008324 * Created link GO:0015317 -OBO_REL:is_a-> GO:0015078 * Created link GO:0015366 -OBO_REL:is_a-> GO:0015078 * Deleted GO:0015367 --part_of--> GO:0015743 * Created link GO:0015367 -OBO_REL:is_a-> GO:0015140 * Created link GO:0015373 -part_of-> GO:0006814 * Created link GO:0015377 -part_of-> GO:0006821 * Deleted GO:0015380 --OBO_REL:is_a--> GO:0015106 * Deleted GO:0015380 --OBO_REL:is_a--> GO:0015108 * Created link GO:0015382 -part_of-> GO:0006814 * Created link GO:0015382 -part_of-> GO:0008272 * Created link GO:0015499 -part_of-> GO:0015724 * Deleted GO:0015515 --part_of--> GO:0015746 * Deleted GO:0015515 --part_of--> GO:0015744 * Deleted GO:0015516 --part_of--> GO:0015745 * Deleted GO:0015516 --part_of--> GO:0015744 * Created link GO:0015530 -part_of-> GO:0015733 * Created link GO:0015532 -OBO_REL:is_a-> GO:0015078 * Created link GO:0015533 -OBO_REL:is_a-> GO:0015078 * Created link GO:0015550 -part_of-> GO:0015737 * Created link GO:0015551 -part_of-> GO:0015731 * Created link GO:0015552 -part_of-> GO:0015730 * Created link GO:0015556 -part_of-> GO:0015740 * Created link GO:0015649 -OBO_REL:is_a-> GO:0015078 * Created link GO:0015649 -part_of-> GO:0046411 * Created link GO:0015650 -OBO_REL:is_a-> GO:0015078 * Created link GO:0015774 -part_of-> GO:0033037 * Deleted GO:0017107 --OBO_REL:is_a--> GO:0015380 * Created link GO:0017107 -OBO_REL:is_a-> GO:0005515 * Created link GO:0017153 -part_of-> GO:0006814 * Created link GO:0019531 -part_of-> GO:0019532 * Changed definition of GO:0022626 from "A ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components. Examples of this component are found in Mus musculus, and in Bacterial and Archaeal species." to "A ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. Examples of this component are found in Mus musculus, and in Bacterial and Archaeal species." * Deleted GO:0022626 --OBO_REL:is_a--> GO:0044445 * Created link GO:0030050 -OBO_REL:is_a-> GO:0051648 * Created link GO:0033287 -part_of-> GO:0033308 * Created link GO:0034658 -part_of-> GO:0034659 * Created link GO:0042890 -part_of-> GO:0042889 * Created link GO:0043882 -OBO_REL:is_a-> GO:0015140 * Created link GO:0043882 -part_of-> GO:0006814 * Changed name of GO:0043931 from "ossification involved in bone morphogenesis" to "ossification involved in bone maturation" * Changed definition of GO:0043931 from "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone involved in the progression of the skeleton from its formation to its mature state." to "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone, involved in the progression of the skeleton from its formation to its mature state." * Added definition dbxref GOC:dph to GO:0043931 * Added definition dbxref GOC:mah to GO:0043931 * Deleted GO:0043931 --part_of--> GO:0060349 * Created link GO:0043931 -part_of-> GO:0070977 * Created link GO:0046943 -part_of-> GO:0046942 * Created link GO:0050833 -part_of-> GO:0006848 * Created link GO:0051471 -part_of-> GO:0051470 * Deleted GO:0051839 --part_of--> GO:0051838 * Created link GO:0051839 -regulates-> GO:0051838 * Deleted GO:0052371 --part_of--> GO:0051828 * Created link GO:0052371 -regulates-> GO:0051828 * Created link GO:0070942 -part_of-> GO:0002446 * Created link GO:0070944 -part_of-> GO:0042742 * Created link GO:0070945 -part_of-> GO:0050829 * Created link GO:0070946 -part_of-> GO:0050830 * Created link GO:0070947 -part_of-> GO:0050832 From gocvs at genome.stanford.edu Tue Oct 6 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 6 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/06/2009 Message-ID: <200910070430.n974UCxD025909@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.819 by 1.822 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060970 * Created object of type obo:TERM with id GO:0060971 * Created object of type obo:TERM with id GO:0060972 * Created object of type obo:TERM with id GO:0060973 * Created object of type obo:TERM with id GO:0060974 * Created object of type obo:TERM with id GO:0060975 * Created object of type obo:TERM with id GO:0060976 * Created object of type obo:TERM with id GO:0060977 * Created object of type obo:TERM with id GO:0060978 * Created object of type obo:TERM with id GO:0060979 * Created object of type obo:TERM with id GO:0060980 * Created object of type obo:TERM with id GO:0060981 * Created object of type obo:TERM with id GO:0060982 * Created object of type obo:TERM with id GO:0060983 * Created object of type obo:TERM with id GO:0060984 * Created object of type obo:TERM with id GO:0060985 * Created object of type obo:TERM with id GO:0070978 * [Changed name of GO:0060970 from "null" to "embryonic heart tube dorsal/ventral pattern formation", Set definition of GO:0060970 to "The regionalization process by which the areas along the dorsal/ventral axis of the embryonic heart tube are established. This process will determine the patterns of cell differentiation along the axis.", Added definition dbxref GOC:mtg_heart to GO:0060970, Created link GO:0060970 -OBO_REL:is_a-> GO:0009953, Created link GO:0060970 -part_of-> GO:0035050, Assigned namespace "biological_process" to GO:0060970] * Changed name of GO:0060970 from "null" to "embryonic heart tube dorsal/ventral pattern formation" * Set definition of GO:0060970 to "The regionalization process by which the areas along the dorsal/ventral axis of the embryonic heart tube are established. This process will determine the patterns of cell differentiation along the axis." * Added definition dbxref GOC:mtg_heart to GO:0060970 * Created link GO:0060970 -OBO_REL:is_a-> GO:0009953 * Created link GO:0060970 -part_of-> GO:0035050 * Assigned namespace "biological_process" to GO:0060970 * [Changed name of GO:0060971 from "null" to "embryonic heart tube left/right pattern formation", Set definition of GO:0060971 to "The pattern specification process by which the left/right axis of the embryonic heart tube is subdivided in space to define an area or volume in which specific patterns of cell differentiation will take place.", Added definition dbxref GOC:mtg_heart to GO:0060971, Created link GO:0060971 -part_of-> GO:0035050, Created link GO:0060971 -OBO_REL:is_a-> GO:0060972, Assigned namespace "biological_process" to GO:0060971] * Changed name of GO:0060971 from "null" to "embryonic heart tube left/right pattern formation" * Set definition of GO:0060971 to "The pattern specification process by which the left/right axis of the embryonic heart tube is subdivided in space to define an area or volume in which specific patterns of cell differentiation will take place." * Added definition dbxref GOC:mtg_heart to GO:0060971 * Created link GO:0060971 -part_of-> GO:0035050 * Created link GO:0060971 -OBO_REL:is_a-> GO:0060972 * Assigned namespace "biological_process" to GO:0060971 * [Changed name of GO:0060972 from "null" to "left/right pattern formation", Set definition of GO:0060972 to "The pattern specification process by which the left/right axis is subdivided in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.", Added definition dbxref GOC:mtg_heart to GO:0060972, Created link GO:0060972 -OBO_REL:is_a-> GO:0003002, Assigned namespace "biological_process" to GO:0060972] * Changed name of GO:0060972 from "null" to "left/right pattern formation" * Set definition of GO:0060972 to "The pattern specification process by which the left/right axis is subdivided in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment." * Added definition dbxref GOC:mtg_heart to GO:0060972 * Created link GO:0060972 -OBO_REL:is_a-> GO:0003002 * Assigned namespace "biological_process" to GO:0060972 * [Changed name of GO:0060973 from "null" to "cell migration involved in heart development", Set definition of GO:0060973 to "The orderly movement of cells from one site to another that will contribute to the progression of the heart over time, from its initial formation, to the mature organ.", Added definition dbxref GOC:mtg_heart to GO:0060973, Created link GO:0060973 -part_of-> GO:0007507, Created link GO:0060973 -OBO_REL:is_a-> GO:0016477, Assigned namespace "biological_process" to GO:0060973] * Changed name of GO:0060973 from "null" to "cell migration involved in heart development" * Set definition of GO:0060973 to "The orderly movement of cells from one site to another that will contribute to the progression of the heart over time, from its initial formation, to the mature organ." * Added definition dbxref GOC:mtg_heart to GO:0060973 * Created link GO:0060973 -part_of-> GO:0007507 * Created link GO:0060973 -OBO_REL:is_a-> GO:0016477 * Assigned namespace "biological_process" to GO:0060973 * [Changed name of GO:0060974 from "null" to "cell migration involved in heart formation", Set definition of GO:0060974 to "The orderly movement of cells from one site to another that contribute to the formation of the heart. The initial heart structure is made up of mesoderm-derived heart progenitor cells and neural crest-derived cells.", Added definition dbxref GOC:mtg_heart to GO:0060974, Created link GO:0060974 -OBO_REL:is_a-> GO:0060973, Assigned namespace "biological_process" to GO:0060974] * Changed name of GO:0060974 from "null" to "cell migration involved in heart formation" * Set definition of GO:0060974 to "The orderly movement of cells from one site to another that contribute to the formation of the heart. The initial heart structure is made up of mesoderm-derived heart progenitor cells and neural crest-derived cells." * Added definition dbxref GOC:mtg_heart to GO:0060974 * Created link GO:0060974 -OBO_REL:is_a-> GO:0060973 * Assigned namespace "biological_process" to GO:0060974 * [Changed name of GO:0060975 from "null" to "cardiac progenitor cell migration", Set definition of GO:0060975 to "The orderly movement of cardiac progenitor cells toward the midline to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060975, Created link GO:0060975 -OBO_REL:is_a-> GO:0060974, Assigned namespace "biological_process" to GO:0060975] * Changed name of GO:0060975 from "null" to "cardiac progenitor cell migration" * Set definition of GO:0060975 to "The orderly movement of cardiac progenitor cells toward the midline to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060975 * Created link GO:0060975 -OBO_REL:is_a-> GO:0060974 * Assigned namespace "biological_process" to GO:0060975 * [Changed name of GO:0060976 from "null" to "coronary vasculature development", Set definition of GO:0060976 to "The process whose specific outcome is the progression of the blood vessels of the heart over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0060976, Added synonym "cardiac blood vessel development" to GO:0060976, Added general dbxref GOC:mtg_heart to synonym cardiac blood vessel development of GO:0060976, Changed synonym scope of GO:0060976 from "Related" to "Exact", Added synonym "cardiac vasculature development" to GO:0060976, Added general dbxref GOC:mtg_heart to synonym cardiac vasculature development of GO:0060976, Changed synonym scope of GO:0060976 from "Related" to "Exact", Added synonym "coronary blood vessel development" to GO:0060976, Added general dbxref GOC:mtg_heart to synonym coronary blood vessel development of GO:0060976, Changed synonym scope of GO:0060976 from "Related" to "Exact", Added synonym "heart blood vessel development" to GO:0060976, Added general dbxref GOC:mtg_heart to synonym heart blood vessel development of GO:0060976, Changed synonym scope of GO:0060976 from "Related" to "Exact", Added synonym "heart vasculature development" to GO:0060976, Added general dbxref GOC:mtg_heart to synonym heart vasculature development of GO:0060976, Changed synonym scope of GO:0060976 from "Related" to "Exact", Created link GO:0060976 -OBO_REL:is_a-> GO:0001568, Created link GO:0060976 -part_of-> GO:0007507, Assigned namespace "biological_process" to GO:0060976] * Changed name of GO:0060976 from "null" to "coronary vasculature development" * Set definition of GO:0060976 to "The process whose specific outcome is the progression of the blood vessels of the heart over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0060976 * Added synonym "cardiac blood vessel development" to GO:0060976 * Added general dbxref GOC:mtg_heart to synonym cardiac blood vessel development of GO:0060976 * Changed synonym scope of GO:0060976 from "Related" to "Exact" * Added synonym "cardiac vasculature development" to GO:0060976 * Added general dbxref GOC:mtg_heart to synonym cardiac vasculature development of GO:0060976 * Changed synonym scope of GO:0060976 from "Related" to "Exact" * Added synonym "coronary blood vessel development" to GO:0060976 * Added general dbxref GOC:mtg_heart to synonym coronary blood vessel development of GO:0060976 * Changed synonym scope of GO:0060976 from "Related" to "Exact" * Added synonym "heart blood vessel development" to GO:0060976 * Added general dbxref GOC:mtg_heart to synonym heart blood vessel development of GO:0060976 * Changed synonym scope of GO:0060976 from "Related" to "Exact" * Added synonym "heart vasculature development" to GO:0060976 * Added general dbxref GOC:mtg_heart to synonym heart vasculature development of GO:0060976 * Changed synonym scope of GO:0060976 from "Related" to "Exact" * Created link GO:0060976 -OBO_REL:is_a-> GO:0001568 * Created link GO:0060976 -part_of-> GO:0007507 * Assigned namespace "biological_process" to GO:0060976 * [Changed name of GO:0060977 from "null" to "coronary vasculature morphogenesis", Set definition of GO:0060977 to "The process by which the anatomical structures of blood vessels of the heart are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood.", Added definition dbxref GOC:mtg_heart to GO:0060977, Added synonym "cardiac blood vessel morphogenesis" to GO:0060977, Added general dbxref GOC:mtg_heart to synonym cardiac blood vessel morphogenesis of GO:0060977, Changed synonym scope of GO:0060977 from "Related" to "Exact", Added synonym "cardiac vasculature morphogenesis" to GO:0060977, Added general dbxref GOC:mtg_heart to synonym cardiac vasculature morphogenesis of GO:0060977, Changed synonym scope of GO:0060977 from "Related" to "Exact", Added synonym "coronary blood vessel morphogenesis" to GO:0060977, Added general dbxref GOC:mtg_heart to synonym coronary blood vessel morphogenesis of GO:0060977, Changed synonym scope of GO:0060977 from "Related" to "Exact", Added synonym "heart blood vessel morphogenesis" to GO:0060977, Added general dbxref GOC:mtg_heart to synonym heart blood vessel morphogenesis of GO:0060977, Changed synonym scope of GO:0060977 from "Related" to "Exact", Added synonym "heart vasculature morphogenesis" to GO:0060977, Added general dbxref GOC:mtg_heart to synonym heart vasculature morphogenesis of GO:0060977, Changed synonym scope of GO:0060977 from "Related" to "Exact", Created link GO:0060977 -OBO_REL:is_a-> GO:0048514, Created link GO:0060977 -OBO_REL:is_a-> GO:0060976, Assigned namespace "biological_process" to GO:0060977] * Changed name of GO:0060977 from "null" to "coronary vasculature morphogenesis" * Set definition of GO:0060977 to "The process by which the anatomical structures of blood vessels of the heart are generated and organized. Morphogenesis pertains to the creation of form. The blood vessel is the vasculature carrying blood." * Added definition dbxref GOC:mtg_heart to GO:0060977 * Added synonym "cardiac blood vessel morphogenesis" to GO:0060977 * Added general dbxref GOC:mtg_heart to synonym cardiac blood vessel morphogenesis of GO:0060977 * Changed synonym scope of GO:0060977 from "Related" to "Exact" * Added synonym "cardiac vasculature morphogenesis" to GO:0060977 * Added general dbxref GOC:mtg_heart to synonym cardiac vasculature morphogenesis of GO:0060977 * Changed synonym scope of GO:0060977 from "Related" to "Exact" * Added synonym "coronary blood vessel morphogenesis" to GO:0060977 * Added general dbxref GOC:mtg_heart to synonym coronary blood vessel morphogenesis of GO:0060977 * Changed synonym scope of GO:0060977 from "Related" to "Exact" * Added synonym "heart blood vessel morphogenesis" to GO:0060977 * Added general dbxref GOC:mtg_heart to synonym heart blood vessel morphogenesis of GO:0060977 * Changed synonym scope of GO:0060977 from "Related" to "Exact" * Added synonym "heart vasculature morphogenesis" to GO:0060977 * Added general dbxref GOC:mtg_heart to synonym heart vasculature morphogenesis of GO:0060977 * Changed synonym scope of GO:0060977 from "Related" to "Exact" * Created link GO:0060977 -OBO_REL:is_a-> GO:0048514 * Created link GO:0060977 -OBO_REL:is_a-> GO:0060976 * Assigned namespace "biological_process" to GO:0060977 * [Changed name of GO:0060978 from "null" to "angiogenesis involved in coronary vascular morphogenesis", Set definition of GO:0060978 to "Blood vessel formation in the heart when new vessels emerge from the proliferation of pre-existing blood vessels.", Added definition dbxref GOC:mtg_heart to GO:0060978, Added synonym "angiogenesis involved in cardiac vascular morphogenesis" to GO:0060978, Added general dbxref GOC:mtg_heart to synonym angiogenesis involved in cardiac vascular morphogenesis of GO:0060978, Changed synonym scope of GO:0060978 from "Related" to "Exact", Added synonym "angiogenesis involved in heart vascular morphogenesis" to GO:0060978, Added general dbxref GOC:mtg_heart to synonym angiogenesis involved in heart vascular morphogenesis of GO:0060978, Changed synonym scope of GO:0060978 from "Related" to "Exact", Added synonym "coronary blood vessel angiogenesis" to GO:0060978, Added general dbxref GOC:mtg_heart to synonym coronary blood vessel angiogenesis of GO:0060978, Changed synonym scope of GO:0060978 from "Related" to "Exact", Added synonym "coronary vasculature angiogenesis" to GO:0060978, Added general dbxref GOC:mtg_heart to synonym coronary vasculature angiogenesis of GO:0060978, Changed synonym scope of GO:0060978 from "Related" to "Exact", Created link GO:0060978 -OBO_REL:is_a-> GO:0001525, Created link GO:0060978 -part_of-> GO:0060977, Assigned namespace "biological_process" to GO:0060978] * Changed name of GO:0060978 from "null" to "angiogenesis involved in coronary vascular morphogenesis" * Set definition of GO:0060978 to "Blood vessel formation in the heart when new vessels emerge from the proliferation of pre-existing blood vessels." * Added definition dbxref GOC:mtg_heart to GO:0060978 * Added synonym "angiogenesis involved in cardiac vascular morphogenesis" to GO:0060978 * Added general dbxref GOC:mtg_heart to synonym angiogenesis involved in cardiac vascular morphogenesis of GO:0060978 * Changed synonym scope of GO:0060978 from "Related" to "Exact" * Added synonym "angiogenesis involved in heart vascular morphogenesis" to GO:0060978 * Added general dbxref GOC:mtg_heart to synonym angiogenesis involved in heart vascular morphogenesis of GO:0060978 * Changed synonym scope of GO:0060978 from "Related" to "Exact" * Added synonym "coronary blood vessel angiogenesis" to GO:0060978 * Added general dbxref GOC:mtg_heart to synonym coronary blood vessel angiogenesis of GO:0060978 * Changed synonym scope of GO:0060978 from "Related" to "Exact" * Added synonym "coronary vasculature angiogenesis" to GO:0060978 * Added general dbxref GOC:mtg_heart to synonym coronary vasculature angiogenesis of GO:0060978 * Changed synonym scope of GO:0060978 from "Related" to "Exact" * Created link GO:0060978 -OBO_REL:is_a-> GO:0001525 * Created link GO:0060978 -part_of-> GO:0060977 * Assigned namespace "biological_process" to GO:0060978 * [Changed name of GO:0060979 from "null" to "vasculogenesis involved in coronary vascular morphogenesis", Set definition of GO:0060979 to "The differentiation of endothelial cells from progenitor cells that contributes to blood vessel development in the heart, and the de novo formation of blood vessels and tubes.", Added definition dbxref GOC:mtg_heart to GO:0060979, Added synonym "coronary vasculogenesis" to GO:0060979, Added general dbxref GOC:mtg_heart to synonym coronary vasculogenesis of GO:0060979, Changed synonym scope of GO:0060979 from "Related" to "Exact", Added synonym "vasculogenesis involved in coronary blood vessel morphogenesis" to GO:0060979, Added general dbxref GOC:mtg_heart to synonym vasculogenesis involved in coronary blood vessel morphogenesis of GO:0060979, Changed synonym scope of GO:0060979 from "Related" to "Exact", Created link GO:0060979 -OBO_REL:is_a-> GO:0001570, Created link GO:0060979 -part_of-> GO:0060977, Assigned namespace "biological_process" to GO:0060979] * Changed name of GO:0060979 from "null" to "vasculogenesis involved in coronary vascular morphogenesis" * Set definition of GO:0060979 to "The differentiation of endothelial cells from progenitor cells that contributes to blood vessel development in the heart, and the de novo formation of blood vessels and tubes." * Added definition dbxref GOC:mtg_heart to GO:0060979 * Added synonym "coronary vasculogenesis" to GO:0060979 * Added general dbxref GOC:mtg_heart to synonym coronary vasculogenesis of GO:0060979 * Changed synonym scope of GO:0060979 from "Related" to "Exact" * Added synonym "vasculogenesis involved in coronary blood vessel morphogenesis" to GO:0060979 * Added general dbxref GOC:mtg_heart to synonym vasculogenesis involved in coronary blood vessel morphogenesis of GO:0060979 * Changed synonym scope of GO:0060979 from "Related" to "Exact" * Created link GO:0060979 -OBO_REL:is_a-> GO:0001570 * Created link GO:0060979 -part_of-> GO:0060977 * Assigned namespace "biological_process" to GO:0060979 * [Changed name of GO:0060980 from "null" to "cell migration involved in coronary vasculogenesis", Set definition of GO:0060980 to "The orderly movement of cells from one site to another that will contribute to the differentiation of endothelial cells that will form the blood vessels of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060980, Created link GO:0060980 -OBO_REL:is_a-> GO:0060973, Created link GO:0060980 -part_of-> GO:0060979, Assigned namespace "biological_process" to GO:0060980] * Changed name of GO:0060980 from "null" to "cell migration involved in coronary vasculogenesis" * Set definition of GO:0060980 to "The orderly movement of cells from one site to another that will contribute to the differentiation of endothelial cells that will form the blood vessels of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060980 * Created link GO:0060980 -OBO_REL:is_a-> GO:0060973 * Created link GO:0060980 -part_of-> GO:0060979 * Assigned namespace "biological_process" to GO:0060980 * [Changed name of GO:0060981 from "null" to "cell migration involved in coronary angiogenesis", Set definition of GO:0060981 to "The orderly movement of cells from one site to another that will contribute to the formation of new blood vessels in the heart pre-existing blood vessels.", Added definition dbxref GOC:mtg_heart to GO:0060981, Created link GO:0060981 -part_of-> GO:0060978, Created link GO:0060981 -OBO_REL:is_a-> GO:0060973, Assigned namespace "biological_process" to GO:0060981] * Changed name of GO:0060981 from "null" to "cell migration involved in coronary angiogenesis" * Set definition of GO:0060981 to "The orderly movement of cells from one site to another that will contribute to the formation of new blood vessels in the heart pre-existing blood vessels." * Added definition dbxref GOC:mtg_heart to GO:0060981 * Created link GO:0060981 -part_of-> GO:0060978 * Created link GO:0060981 -OBO_REL:is_a-> GO:0060973 * Assigned namespace "biological_process" to GO:0060981 * [Changed name of GO:0060982 from "null" to "coronary artery morphogenesis", Set definition of GO:0060982 to "The process by which the anatomical structures of coronary arteries are generated and organized. Coronary arteries are blood vessels that transport blood to the heart muscle.", Added definition dbxref GOC:mtg_heart to GO:0060982, Created link GO:0060982 -OBO_REL:is_a-> GO:0048844, Created link GO:0060982 -OBO_REL:is_a-> GO:0060977, Assigned namespace "biological_process" to GO:0060982] * Changed name of GO:0060982 from "null" to "coronary artery morphogenesis" * Set definition of GO:0060982 to "The process by which the anatomical structures of coronary arteries are generated and organized. Coronary arteries are blood vessels that transport blood to the heart muscle." * Added definition dbxref GOC:mtg_heart to GO:0060982 * Created link GO:0060982 -OBO_REL:is_a-> GO:0048844 * Created link GO:0060982 -OBO_REL:is_a-> GO:0060977 * Assigned namespace "biological_process" to GO:0060982 * [Changed name of GO:0060983 from "null" to "epicardium-derived cardiac vascular smooth muscle cell differentiation", Set definition of GO:0060983 to "The process whereby a relatively unspecialized cell derived from the epicardium acquires specialized features of a cardiac vascular smooth muscle cell. A cardiac vascular smooth muscle cell covers the heart vasculature and lacks transverse striations in its constituent fibers.", Added definition dbxref GOC:mtg_heart to GO:0060983, Created link GO:0060983 -OBO_REL:is_a-> GO:0060947, Assigned namespace "biological_process" to GO:0060983] * Changed name of GO:0060983 from "null" to "epicardium-derived cardiac vascular smooth muscle cell differentiation" * Set definition of GO:0060983 to "The process whereby a relatively unspecialized cell derived from the epicardium acquires specialized features of a cardiac vascular smooth muscle cell. A cardiac vascular smooth muscle cell covers the heart vasculature and lacks transverse striations in its constituent fibers." * Added definition dbxref GOC:mtg_heart to GO:0060983 * Created link GO:0060983 -OBO_REL:is_a-> GO:0060947 * Assigned namespace "biological_process" to GO:0060983 * [Changed name of GO:0060984 from "null" to "epicardium-derived cardiac vascular smooth muscle cell development", Set definition of GO:0060984 to "The process whose specific outcome is the progression of a cardiac vascular smooth muscle cell that was derived from the epicardium over time, from its formation to the mature state.", Added definition dbxref GOC:mtg_heart to GO:0060984, Created link GO:0060984 -OBO_REL:is_a-> GO:0060948, Created link GO:0060984 -part_of-> GO:0060983, Assigned namespace "biological_process" to GO:0060984] * Changed name of GO:0060984 from "null" to "epicardium-derived cardiac vascular smooth muscle cell development" * Set definition of GO:0060984 to "The process whose specific outcome is the progression of a cardiac vascular smooth muscle cell that was derived from the epicardium over time, from its formation to the mature state." * Added definition dbxref GOC:mtg_heart to GO:0060984 * Created link GO:0060984 -OBO_REL:is_a-> GO:0060948 * Created link GO:0060984 -part_of-> GO:0060983 * Assigned namespace "biological_process" to GO:0060984 * [Changed name of GO:0060985 from "null" to "epicardium-derived cardiac vascular smooth muscle cell fate commitment", Set definition of GO:0060985 to "The commitment of an epicardial cell to a cardiac vascular smooth muscle cell fate and its capacity to differentiate into a cardiac vascular smooth muscle cell.", Added definition dbxref GOC:mtg_heart to GO:0060985, Created link GO:0060985 -part_of-> GO:0060983, Created link GO:0060985 -OBO_REL:is_a-> GO:0060949, Assigned namespace "biological_process" to GO:0060985] * Changed name of GO:0060985 from "null" to "epicardium-derived cardiac vascular smooth muscle cell fate commitment" * Set definition of GO:0060985 to "The commitment of an epicardial cell to a cardiac vascular smooth muscle cell fate and its capacity to differentiate into a cardiac vascular smooth muscle cell." * Added definition dbxref GOC:mtg_heart to GO:0060985 * Created link GO:0060985 -part_of-> GO:0060983 * Created link GO:0060985 -OBO_REL:is_a-> GO:0060949 * Assigned namespace "biological_process" to GO:0060985 * [Changed name of GO:0070978 from "null" to "voltage-gated calcium channel complex assembly", Set definition of GO:0070978 to "Cellular protein complex assembly that results in the formation of a voltage-gated calcium channel complex.", Added definition dbxref GOC:mh to GO:0070978, Created link GO:0070978 -OBO_REL:is_a-> GO:0043623, Assigned namespace "biological_process" to GO:0070978] * Changed name of GO:0070978 from "null" to "voltage-gated calcium channel complex assembly" * Set definition of GO:0070978 to "Cellular protein complex assembly that results in the formation of a voltage-gated calcium channel complex." * Added definition dbxref GOC:mh to GO:0070978 * Created link GO:0070978 -OBO_REL:is_a-> GO:0043623 * Assigned namespace "biological_process" to GO:0070978 * Changed definition of GO:0003129 from "The close range interaction between mesoderm and endoderm that causes cells to change their fates and specify the development of the heart." to "The close range interaction between mesoderm and endoderm or ectoderm that causes cells to change their fates and specify the development of the heart." * Changed definition of GO:0003134 from "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to heart induction." to "Any process that mediates the transfer of information from endodermal cells to mesodermal cells that contributes to heart induction." * Created link GO:0003147 -OBO_REL:is_a-> GO:0060974 * Changed definition of GO:0003159 from "The process by which the anatomical structure of an endothelium are generated and organized. An endothelium is an epithelium that lines an anatomical structure." to "The process by which the anatomical structure of an endothelium is generated and organized. An endothelium is an epithelium that lines an anatomical structure." * Changed definition of GO:0003162 from "The process whose specific outcome is the progression of the AV node over time, from its formation to the mature structure. The AV node is part of the cardiac conduction system that controls the timing of ventricle contraction by receiving signals from the SA node and relaying them to the His-Purkinje system." to "The process whose specific outcome is the progression of the AV node over time, from its formation to the mature structure. The AV node is part of the cardiac conduction system that controls the timing of ventricle contraction by receiving electrical signals from the SA node and relaying them to the His-Purkinje system." * Changed definition of GO:0003163 from "The process whose specific outcome is the progression of the SA node over time, from its formation to the mature structure. The SA node is part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays information to the AV node." to "The process whose specific outcome is the progression of the SA node over time, from its formation to the mature structure. The SA node is part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node." * Changed synonym scope of GO:0003163 from "Related" to "Exact" * Added synonym "AV bundle cell differentiation" to GO:0003167 * Added general dbxref GOC:mtg_heart to synonym AV bundle cell differentiation of GO:0003167 * Changed synonym scope of GO:0003167 from "Related" to "Exact" * Changed definition of GO:0004951 from "Combining with cholecystokinin, a 33-amino acid peptide secreted by the upper intestinal mucosa and also found in the central nervous system, to initiate a change in cell activity." to "Combining with a cholecystokinin, a ny of a group of related neuropeptides secreted by the upper intestinal mucosa and also found in the central nervous system, to initiate a change in cell activity." * Added definition dbxref GOC:mah to GO:0004951 * Removed comment * Changed synonym scope of GO:0006370 from "Exact" to "Broad" * Added synonym "arteriogenesis" to GO:0048844 * Added general dbxref GOC:mtg_heart to synonym arteriogenesis of GO:0048844 * Changed synonym scope of GO:0048844 from "Related" to "Exact" * Changed definition of GO:0060914 from "The developmental process pertaining to the initial formation of the heart from unspecified parts. This process begins with the specific processes that contribute to the appearance of the heart field and ends when the structural rudiment is recognizable." to "The developmental process pertaining to the initial formation of the heart from unspecified parts. This process begins with the specific processes that contribute to the appearance of the heart field and the arrival of cardiac neural crest to the heart region. The process ends when the structural rudiment is recognizable." * Created link GO:0060947 -part_of-> GO:0060976 * Changed definition of GO:0070939 from "A multisubunit tethering complex, i.e. a protein complex involved in mediating the initial interaction between vesicles and the membranes with which they fuse, that is involved in trafficking from the Golgi apparatus to the ER. In S. cerevisiae the Dsl1p complex contains Dsl1p, Tip20p, and Sec39p" to "A multisubunit tethering complex, i.e. a protein complex involved in mediating the initial interaction between vesicles and the membranes with which they fuse, that is involved in trafficking from the Golgi apparatus to the ER. In Saccharomyces cerevisiae the Dsl1p complex contains Dsl1p, Tip20p, and Sec39p" * Deleted synonym "up-regulation of neutrophil mediated killing of symbiont cellu" from GO:0070961 * Added synonym "up-regulation of neutrophil mediated killing of symbiont cell" to GO:0070961 * Added general dbxref GOC:mah to synonym up-regulation of neutrophil mediated killing of symbiont cell of GO:0070961 * Changed synonym scope of GO:0070961 from "Related" to "Exact" * Changed definition of GO:0070969 from "A protein complex taht is essential for mammalian autophagy, and consists of at least 3 proteins: ULK1, ATG13 and RB1CC1(FIP200). This complex is the mammalian counterpart of Atg1-Atg13-Atg17 in yeast." to "A protein complex that is essential for mammalian autophagy, and consists of at least 3 proteins: ULK1, ATG13 and RB1CC1(FIP200). This complex is the mammalian counterpart of Atg1-Atg13-Atg17 in yeast." * Changed definition of GO:0070975 from "Interacting selectively and non-covalently with a FHA domain of a protein. The FHA domain is a phosphopeptide recognition domain found in many regulatory proteins, and consists of pproximately 80-100 amino acid residues folded into an 11-stranded beta sandwich." to "Interacting selectively and non-covalently with a FHA domain of a protein. The FHA domain is a phosphopeptide recognition domain found in many regulatory proteins, and consists of approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich." From gocvs at genome.stanford.edu Wed Oct 7 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 7 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/07/2009 Message-ID: <200910080430.n984UCs9013051@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.822 by 1.823 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Changed name of GO:0009736 from "cytokinin mediated signaling" to "cytokinin mediated signaling pathway" * Changed name of GO:0009738 from "abscisic acid mediated signaling" to "abscisic acid mediated signaling pathway" * Changed name of GO:0009740 from "gibberellic acid mediated signaling" to "gibberellic acid mediated signaling pathway" * Changed name of GO:0009742 from "brassinosteroid mediated signaling" to "brassinosteroid mediated signaling pathway" * Changed name of GO:0009755 from "hormone-mediated signaling" to "hormone-mediated signaling pathway" * Changed name of GO:0009787 from "regulation of abscisic acid mediated signaling" to "regulation of abscisic acid mediated signaling pathway" * Changed name of GO:0009788 from "negative regulation of abscisic acid mediated signaling" to "negative regulation of abscisic acid mediated signaling pathway" * Changed name of GO:0009789 from "positive regulation of abscisic acid mediated signaling" to "positive regulation of abscisic acid mediated signaling pathway" * Changed name of GO:0009937 from "regulation of gibberellic acid mediated signaling" to "regulation of gibberellic acid mediated signaling pathway" * Changed name of GO:0009938 from "negative regulation of gibberellic acid mediated signaling" to "negative regulation of gibberellic acid mediated signaling pathway" * Changed name of GO:0009939 from "positive regulation of gibberellic acid mediated signaling" to "positive regulation of gibberellic acid mediated signaling pathway" * Changed name of GO:0010182 from "sugar mediated signaling" to "sugar mediated signaling pathway" * Deleted GO:0010205 --part_of--> GO:0009767 * Created link GO:0010205 -negatively_regulates-> GO:0009767 * Deleted GO:0010216 --OBO_REL:is_a--> GO:0044030 * Created link GO:0010216 -part_of-> GO:0006306 * Changed name of GO:0010255 from "glucose mediated signaling" to "glucose mediated signaling pathway" * Created link GO:0010422 -OBO_REL:is_a-> GO:0046885 * Created link GO:0010423 -OBO_REL:is_a-> GO:0032353 * Created link GO:0010465 -part_of-> GO:0048011 * Changed name of GO:0010476 from "gibberellin-mediated signaling" to "gibberellin mediated signaling pathway" * Deleted GO:0010941 --OBO_REL:is_a--> GO:0050793 * Deleted GO:0010942 --OBO_REL:is_a--> GO:0051094 * Created link GO:0016131 -OBO_REL:is_a-> GO:0042445 * Created link GO:0016132 -OBO_REL:is_a-> GO:0042446 * Created link GO:0016133 -OBO_REL:is_a-> GO:0042447 * Deleted GO:0030449 --OBO_REL:is_a--> GO:0010953 * Changed name of GO:0042388 from "gibberellic acid mediated signaling, G-alpha-dependent" to "gibberellic acid mediated signaling pathway, G-alpha-dependent" * Changed name of GO:0042390 from "gibberellic acid mediated signaling, G-alpha-independent" to "gibberellic acid mediated signaling pathway, G-alpha-independent" * Changed name of GO:0043401 from "steroid hormone mediated signaling" to "steroid hormone mediated signaling pathway" * Changed name of GO:0043402 from "glucocorticoid mediated signaling" to "glucocorticoid mediated signaling pathway" * Deleted GO:0045916 --OBO_REL:is_a--> GO:0010955 * Deleted GO:0045917 --OBO_REL:is_a--> GO:0010954 * Created link GO:0048316 -OBO_REL:is_a-> GO:0032501 * Created link GO:0048316 -OBO_REL:is_a-> GO:0009791 * Changed name of GO:0080036 from "regulation of cytokinin mediated signaling" to "regulation of cytokinin mediated signaling pathway" * Changed name of GO:0080037 from "negative regulation of cytokinin mediated signaling" to "negative regulation of cytokinin mediated signaling pathway" * Changed name of GO:0080038 from "positive regulation of cytokinin mediated signaling" to "positive regulation of cytokinin mediated signaling pathway" From gocvs at genome.stanford.edu Thu Oct 8 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 8 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/08/2009 Message-ID: <200910090430.n994UCdl001114@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.823 by 1.825 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003169 * Created object of type obo:TERM with id GO:0003170 * Created object of type obo:TERM with id GO:0003171 * Created object of type obo:TERM with id GO:0003172 * Created object of type obo:TERM with id GO:0003173 * Created object of type obo:TERM with id GO:0003174 * Created object of type obo:TERM with id GO:0003175 * Created object of type obo:TERM with id GO:0003176 * Created object of type obo:TERM with id GO:0003177 * Created object of type obo:TERM with id GO:0003178 * Created object of type obo:TERM with id GO:0003179 * Created object of type obo:TERM with id GO:0003180 * Created object of type obo:TERM with id GO:0003181 * Created object of type obo:TERM with id GO:0003182 * Created object of type obo:TERM with id GO:0003183 * Created object of type obo:TERM with id GO:0003184 * Created object of type obo:TERM with id GO:0003185 * Created object of type obo:TERM with id GO:0003186 * Created object of type obo:TERM with id GO:0003187 * Created object of type obo:TERM with id GO:0003188 * Created object of type obo:TERM with id GO:0003189 * Created object of type obo:TERM with id GO:0003190 * Created object of type obo:TERM with id GO:0003191 * Created object of type obo:TERM with id GO:0003192 * Created object of type obo:TERM with id GO:0003193 * Created object of type obo:TERM with id GO:0003194 * Created object of type obo:TERM with id GO:0003195 * Created object of type obo:TERM with id GO:0003196 * Created object of type obo:TERM with id GO:0003197 * Created object of type obo:TERM with id GO:0003198 * Created object of type obo:TERM with id GO:0003199 * Created object of type obo:TERM with id GO:0003200 * Created object of type obo:TERM with id GO:0003201 * Created object of type obo:TERM with id GO:0003202 * Created object of type obo:TERM with id GO:0003203 * [Changed name of GO:0003169 from "null" to "coronary vein morphogenesis", Set definition of GO:0003169 to "The process by which the anatomical structures of veins of the heart are generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003169, Created link GO:0003169 -OBO_REL:is_a-> GO:0060977, Created link GO:0003169 -OBO_REL:is_a-> GO:0048845, Assigned namespace "biological_process" to GO:0003169] * Changed name of GO:0003169 from "null" to "coronary vein morphogenesis" * Set definition of GO:0003169 to "The process by which the anatomical structures of veins of the heart are generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003169 * Created link GO:0003169 -OBO_REL:is_a-> GO:0060977 * Created link GO:0003169 -OBO_REL:is_a-> GO:0048845 * Assigned namespace "biological_process" to GO:0003169 * [Changed name of GO:0003170 from "null" to "heart valve development", Set definition of GO:0003170 to "The progression of a heart valve over time, from it's formation to the mature structure. The heart valve is a structure that restricts the flow of blood to different regions of the heart. It forms from the endocardial cushion.", Added definition dbxref GOC:mtg_heart to GO:0003170, Added synonym "cardiac valve development" to GO:0003170, Added general dbxref GOC:mtg_heart to synonym cardiac valve development of GO:0003170, Changed synonym scope of GO:0003170 from "Related" to "Exact", Created link GO:0003170 -OBO_REL:is_a-> GO:0048856, Created link GO:0003170 -part_of-> GO:0007507, Assigned namespace "biological_process" to GO:0003170] * Changed name of GO:0003170 from "null" to "heart valve development" * Set definition of GO:0003170 to "The progression of a heart valve over time, from it's formation to the mature structure. The heart valve is a structure that restricts the flow of blood to different regions of the heart. It forms from the endocardial cushion." * Added definition dbxref GOC:mtg_heart to GO:0003170 * Added synonym "cardiac valve development" to GO:0003170 * Added general dbxref GOC:mtg_heart to synonym cardiac valve development of GO:0003170 * Changed synonym scope of GO:0003170 from "Related" to "Exact" * Created link GO:0003170 -OBO_REL:is_a-> GO:0048856 * Created link GO:0003170 -part_of-> GO:0007507 * Assigned namespace "biological_process" to GO:0003170 * [Changed name of GO:0003171 from "null" to "atrioventricular valve development", Set definition of GO:0003171 to "The progression of the atrioventricular valve over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003171, Created link GO:0003171 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003171] * Changed name of GO:0003171 from "null" to "atrioventricular valve development" * Set definition of GO:0003171 to "The progression of the atrioventricular valve over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003171 * Created link GO:0003171 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003171 * [Changed name of GO:0003172 from "null" to "sinoatrial valve development", Set definition of GO:0003172 to "The progression of the sinoatrial valve over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003172, Created link GO:0003172 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003172] * Changed name of GO:0003172 from "null" to "sinoatrial valve development" * Set definition of GO:0003172 to "The progression of the sinoatrial valve over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003172 * Created link GO:0003172 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003172 * [Changed name of GO:0003173 from "null" to "ventriculo bulbo valve development", Set definition of GO:0003173 to "The progression of the ventriculo bulbo valve over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003173, Created link GO:0003173 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003173] * Changed name of GO:0003173 from "null" to "ventriculo bulbo valve development" * Set definition of GO:0003173 to "The progression of the ventriculo bulbo valve over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003173 * Created link GO:0003173 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003173 * [Changed name of GO:0003174 from "null" to "mitral valve development", Set definition of GO:0003174 to "The progression of the mitral valve over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003174, Created link GO:0003174 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003174] * Changed name of GO:0003174 from "null" to "mitral valve development" * Set definition of GO:0003174 to "The progression of the mitral valve over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003174 * Created link GO:0003174 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003174 * [Changed name of GO:0003175 from "null" to "tricuspid valve development", Set definition of GO:0003175 to "The progression of the tricuspid valve over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003175, Created link GO:0003175 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003175] * Changed name of GO:0003175 from "null" to "tricuspid valve development" * Set definition of GO:0003175 to "The progression of the tricuspid valve over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003175 * Created link GO:0003175 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003175 * [Changed name of GO:0003176 from "null" to "aortic valve development", Set definition of GO:0003176 to "The progression of the aortic valve over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003176, Created link GO:0003176 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003176] * Changed name of GO:0003176 from "null" to "aortic valve development" * Set definition of GO:0003176 to "The progression of the aortic valve over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003176 * Created link GO:0003176 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003176 * [Changed name of GO:0003177 from "null" to "pulmonary valve development", Set definition of GO:0003177 to "The progression of the pulmonary valve over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003177, Created link GO:0003177 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003177] * Changed name of GO:0003177 from "null" to "pulmonary valve development" * Set definition of GO:0003177 to "The progression of the pulmonary valve over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003177 * Created link GO:0003177 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003177 * [Changed name of GO:0003178 from "null" to "coronary sinus valve development", Set definition of GO:0003178 to "The progression of the valve of the coronary sinus over time, from it's formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003178, Created link GO:0003178 -OBO_REL:is_a-> GO:0003170, Assigned namespace "biological_process" to GO:0003178] * Changed name of GO:0003178 from "null" to "coronary sinus valve development" * Set definition of GO:0003178 to "The progression of the valve of the coronary sinus over time, from it's formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003178 * Created link GO:0003178 -OBO_REL:is_a-> GO:0003170 * Assigned namespace "biological_process" to GO:0003178 * [Changed name of GO:0003179 from "null" to "heart valve morphogenesis", Set definition of GO:0003179 to "The process by which the structure of a heart valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003179, Created link GO:0003179 -OBO_REL:is_a-> GO:0009653, Created link GO:0003179 -part_of-> GO:0003170, Assigned namespace "biological_process" to GO:0003179] * Changed name of GO:0003179 from "null" to "heart valve morphogenesis" * Set definition of GO:0003179 to "The process by which the structure of a heart valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003179 * Created link GO:0003179 -OBO_REL:is_a-> GO:0009653 * Created link GO:0003179 -part_of-> GO:0003170 * Assigned namespace "biological_process" to GO:0003179 * [Changed name of GO:0003180 from "null" to "aortic valve morphogenesis", Set definition of GO:0003180 to "The process by which the structure of the aortic valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003180, Created link GO:0003180 -part_of-> GO:0003176, Created link GO:0003180 -OBO_REL:is_a-> GO:0003179, Assigned namespace "biological_process" to GO:0003180] * Changed name of GO:0003180 from "null" to "aortic valve morphogenesis" * Set definition of GO:0003180 to "The process by which the structure of the aortic valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003180 * Created link GO:0003180 -part_of-> GO:0003176 * Created link GO:0003180 -OBO_REL:is_a-> GO:0003179 * Assigned namespace "biological_process" to GO:0003180 * [Changed name of GO:0003181 from "null" to "atrioventricular valve morphogenesis", Set definition of GO:0003181 to "The process by which the structure of the atrioventricular valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003181, Created link GO:0003181 -OBO_REL:is_a-> GO:0003179, Created link GO:0003181 -part_of-> GO:0003171, Assigned namespace "biological_process" to GO:0003181] * Changed name of GO:0003181 from "null" to "atrioventricular valve morphogenesis" * Set definition of GO:0003181 to "The process by which the structure of the atrioventricular valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003181 * Created link GO:0003181 -OBO_REL:is_a-> GO:0003179 * Created link GO:0003181 -part_of-> GO:0003171 * Assigned namespace "biological_process" to GO:0003181 * [Changed name of GO:0003182 from "null" to "coronary sinus valve morphogenesis", Set definition of GO:0003182 to "The process by which the structure of the coronary sinus valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003182, Created link GO:0003182 -OBO_REL:is_a-> GO:0003179, Created link GO:0003182 -part_of-> GO:0003178, Assigned namespace "biological_process" to GO:0003182] * Changed name of GO:0003182 from "null" to "coronary sinus valve morphogenesis" * Set definition of GO:0003182 to "The process by which the structure of the coronary sinus valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003182 * Created link GO:0003182 -OBO_REL:is_a-> GO:0003179 * Created link GO:0003182 -part_of-> GO:0003178 * Assigned namespace "biological_process" to GO:0003182 * [Changed name of GO:0003183 from "null" to "mitral valve morphogenesis", Set definition of GO:0003183 to "The process by which the structure of the mitral valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003183, Created link GO:0003183 -OBO_REL:is_a-> GO:0003179, Created link GO:0003183 -part_of-> GO:0003174, Assigned namespace "biological_process" to GO:0003183] * Changed name of GO:0003183 from "null" to "mitral valve morphogenesis" * Set definition of GO:0003183 to "The process by which the structure of the mitral valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003183 * Created link GO:0003183 -OBO_REL:is_a-> GO:0003179 * Created link GO:0003183 -part_of-> GO:0003174 * Assigned namespace "biological_process" to GO:0003183 * [Changed name of GO:0003184 from "null" to "pulmonary valve morphogenesis", Set definition of GO:0003184 to "The process by which the structure of the pulmonary valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003184, Created link GO:0003184 -part_of-> GO:0003177, Created link GO:0003184 -OBO_REL:is_a-> GO:0003179, Assigned namespace "biological_process" to GO:0003184] * Changed name of GO:0003184 from "null" to "pulmonary valve morphogenesis" * Set definition of GO:0003184 to "The process by which the structure of the pulmonary valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003184 * Created link GO:0003184 -part_of-> GO:0003177 * Created link GO:0003184 -OBO_REL:is_a-> GO:0003179 * Assigned namespace "biological_process" to GO:0003184 * [Changed name of GO:0003185 from "null" to "sinoatrial valve morphogenesis", Set definition of GO:0003185 to "The process by which the structure of the sinoatrial valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003185, Created link GO:0003185 -part_of-> GO:0003172, Created link GO:0003185 -OBO_REL:is_a-> GO:0003179, Assigned namespace "biological_process" to GO:0003185] * Changed name of GO:0003185 from "null" to "sinoatrial valve morphogenesis" * Set definition of GO:0003185 to "The process by which the structure of the sinoatrial valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003185 * Created link GO:0003185 -part_of-> GO:0003172 * Created link GO:0003185 -OBO_REL:is_a-> GO:0003179 * Assigned namespace "biological_process" to GO:0003185 * [Changed name of GO:0003186 from "null" to "tricuspid valve morphogenesis", Set definition of GO:0003186 to "The process by which the structure of the tricuspid valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003186, Created link GO:0003186 -OBO_REL:is_a-> GO:0003179, Created link GO:0003186 -part_of-> GO:0003175, Assigned namespace "biological_process" to GO:0003186] * Changed name of GO:0003186 from "null" to "tricuspid valve morphogenesis" * Set definition of GO:0003186 to "The process by which the structure of the tricuspid valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003186 * Created link GO:0003186 -OBO_REL:is_a-> GO:0003179 * Created link GO:0003186 -part_of-> GO:0003175 * Assigned namespace "biological_process" to GO:0003186 * [Changed name of GO:0003187 from "null" to "ventriculo bulbo valve morphogenesis", Set definition of GO:0003187 to "The process by which the structure of the ventriculo bulbo valve is generated and organized. Morphogenesis pertains to the creation of form.", Added definition dbxref GOC:mtg_heart to GO:0003187, Created link GO:0003187 -part_of-> GO:0003173, Created link GO:0003187 -OBO_REL:is_a-> GO:0003179, Assigned namespace "biological_process" to GO:0003187] * Changed name of GO:0003187 from "null" to "ventriculo bulbo valve morphogenesis" * Set definition of GO:0003187 to "The process by which the structure of the ventriculo bulbo valve is generated and organized. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003187 * Created link GO:0003187 -part_of-> GO:0003173 * Created link GO:0003187 -OBO_REL:is_a-> GO:0003179 * Assigned namespace "biological_process" to GO:0003187 * [Changed name of GO:0003188 from "null" to "heart valve formation", Set definition of GO:0003188 to "The developmental process pertaining to the initial formation of a heart valve from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003188, Created link GO:0003188 -part_of-> GO:0003179, Created link GO:0003188 -OBO_REL:is_a-> GO:0048646, Assigned namespace "biological_process" to GO:0003188] * Changed name of GO:0003188 from "null" to "heart valve formation" * Set definition of GO:0003188 to "The developmental process pertaining to the initial formation of a heart valve from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003188 * Created link GO:0003188 -part_of-> GO:0003179 * Created link GO:0003188 -OBO_REL:is_a-> GO:0048646 * Assigned namespace "biological_process" to GO:0003188 * [Changed name of GO:0003189 from "null" to "aortic valve formation", Set definition of GO:0003189 to "The developmental process pertaining to the initial formation of the aortic valve from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003189, Created link GO:0003189 -OBO_REL:is_a-> GO:0003188, Created link GO:0003189 -part_of-> GO:0003180, Assigned namespace "biological_process" to GO:0003189] * Changed name of GO:0003189 from "null" to "aortic valve formation" * Set definition of GO:0003189 to "The developmental process pertaining to the initial formation of the aortic valve from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003189 * Created link GO:0003189 -OBO_REL:is_a-> GO:0003188 * Created link GO:0003189 -part_of-> GO:0003180 * Assigned namespace "biological_process" to GO:0003189 * [Changed name of GO:0003190 from "null" to "atrioventricular valve formation", Set definition of GO:0003190 to "The developmental process pertaining to the initial formation of the atrioventricular valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0003190, Created link GO:0003190 -part_of-> GO:0003181, Created link GO:0003190 -OBO_REL:is_a-> GO:0003188, Assigned namespace "biological_process" to GO:0003190] * Changed name of GO:0003190 from "null" to "atrioventricular valve formation" * Set definition of GO:0003190 to "The developmental process pertaining to the initial formation of the atrioventricular valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0003190 * Created link GO:0003190 -part_of-> GO:0003181 * Created link GO:0003190 -OBO_REL:is_a-> GO:0003188 * Assigned namespace "biological_process" to GO:0003190 * [Changed name of GO:0003191 from "null" to "coronary sinus valve formation", Set definition of GO:0003191 to "The developmental process pertaining to the initial formation of the coronary sinus valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0003191, Created link GO:0003191 -OBO_REL:is_a-> GO:0003188, Created link GO:0003191 -part_of-> GO:0003182, Assigned namespace "biological_process" to GO:0003191] * Changed name of GO:0003191 from "null" to "coronary sinus valve formation" * Set definition of GO:0003191 to "The developmental process pertaining to the initial formation of the coronary sinus valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0003191 * Created link GO:0003191 -OBO_REL:is_a-> GO:0003188 * Created link GO:0003191 -part_of-> GO:0003182 * Assigned namespace "biological_process" to GO:0003191 * [Changed name of GO:0003192 from "null" to "mitral valve formation", Set definition of GO:0003192 to "The developmental process pertaining to the initial formation of the mitral valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0003192, Created link GO:0003192 -part_of-> GO:0003183, Created link GO:0003192 -OBO_REL:is_a-> GO:0003188, Assigned namespace "biological_process" to GO:0003192] * Changed name of GO:0003192 from "null" to "mitral valve formation" * Set definition of GO:0003192 to "The developmental process pertaining to the initial formation of the mitral valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0003192 * Created link GO:0003192 -part_of-> GO:0003183 * Created link GO:0003192 -OBO_REL:is_a-> GO:0003188 * Assigned namespace "biological_process" to GO:0003192 * [Changed name of GO:0003193 from "null" to "pulmonary valve formation", Set definition of GO:0003193 to "The developmental process pertaining to the initial formation of the pulmonary valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0003193, Created link GO:0003193 -OBO_REL:is_a-> GO:0003188, Created link GO:0003193 -part_of-> GO:0003184, Assigned namespace "biological_process" to GO:0003193] * Changed name of GO:0003193 from "null" to "pulmonary valve formation" * Set definition of GO:0003193 to "The developmental process pertaining to the initial formation of the pulmonary valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0003193 * Created link GO:0003193 -OBO_REL:is_a-> GO:0003188 * Created link GO:0003193 -part_of-> GO:0003184 * Assigned namespace "biological_process" to GO:0003193 * [Changed name of GO:0003194 from "null" to "sinoatrial valve formation", Set definition of GO:0003194 to "The developmental process pertaining to the initial formation of the sinoatrial valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0003194, Created link GO:0003194 -part_of-> GO:0003185, Created link GO:0003194 -OBO_REL:is_a-> GO:0003188, Assigned namespace "biological_process" to GO:0003194] * Changed name of GO:0003194 from "null" to "sinoatrial valve formation" * Set definition of GO:0003194 to "The developmental process pertaining to the initial formation of the sinoatrial valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0003194 * Created link GO:0003194 -part_of-> GO:0003185 * Created link GO:0003194 -OBO_REL:is_a-> GO:0003188 * Assigned namespace "biological_process" to GO:0003194 * [Changed name of GO:0003195 from "null" to "tricuspid valve formation", Set definition of GO:0003195 to "The developmental process pertaining to the initial formation of the tricuspid valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0003195, Created link GO:0003195 -part_of-> GO:0003186, Created link GO:0003195 -OBO_REL:is_a-> GO:0003188, Assigned namespace "biological_process" to GO:0003195] * Changed name of GO:0003195 from "null" to "tricuspid valve formation" * Set definition of GO:0003195 to "The developmental process pertaining to the initial formation of the tricuspid valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0003195 * Created link GO:0003195 -part_of-> GO:0003186 * Created link GO:0003195 -OBO_REL:is_a-> GO:0003188 * Assigned namespace "biological_process" to GO:0003195 * [Changed name of GO:0003196 from "null" to "ventriculo bulbo valve formation", Set definition of GO:0003196 to "The developmental process pertaining to the initial formation of the ventriculo bulbo valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0003196, Created link GO:0003196 -OBO_REL:is_a-> GO:0003188, Created link GO:0003196 -part_of-> GO:0003187, Assigned namespace "biological_process" to GO:0003196] * Changed name of GO:0003196 from "null" to "ventriculo bulbo valve formation" * Set definition of GO:0003196 to "The developmental process pertaining to the initial formation of the ventriculo bulbo valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0003196 * Created link GO:0003196 -OBO_REL:is_a-> GO:0003188 * Created link GO:0003196 -part_of-> GO:0003187 * Assigned namespace "biological_process" to GO:0003196 * [Changed name of GO:0003197 from "null" to "endocardial cushion development", Set definition of GO:0003197 to "The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of the endocardium that will give rise to the heart septa and valves.", Added definition dbxref GOC:mtg_heart to GO:0003197, Created link GO:0003197 -OBO_REL:is_a-> GO:0003158, Created link GO:0003197 -part_of-> GO:0003157, Assigned namespace "biological_process" to GO:0003197] * Changed name of GO:0003197 from "null" to "endocardial cushion development" * Set definition of GO:0003197 to "The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of the endocardium that will give rise to the heart septa and valves." * Added definition dbxref GOC:mtg_heart to GO:0003197 * Created link GO:0003197 -OBO_REL:is_a-> GO:0003158 * Created link GO:0003197 -part_of-> GO:0003157 * Assigned namespace "biological_process" to GO:0003197 * [Changed name of GO:0003198 from "null" to "epithelial to mesenchymal transition involved in endocardial cushion formation", Set definition of GO:0003198 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of the endocardial cushion.", Added definition dbxref GOC:mtg_heart to GO:0003198, Created link GO:0003198 -OBO_REL:is_a-> GO:0060317, Assigned namespace "biological_process" to GO:0003198] * Changed name of GO:0003198 from "null" to "epithelial to mesenchymal transition involved in endocardial cushion formation" * Set definition of GO:0003198 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of the endocardial cushion." * Added definition dbxref GOC:mtg_heart to GO:0003198 * Created link GO:0003198 -OBO_REL:is_a-> GO:0060317 * Assigned namespace "biological_process" to GO:0003198 * [Changed name of GO:0003199 from "null" to "endocardial cushion cell to mesenchymal cell transition involved in valve formation", Set definition of GO:0003199 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.", Added definition dbxref GOC:mtg_heart to GO:0003199, Created link GO:0003199 -OBO_REL:is_a-> GO:0060317, Assigned namespace "biological_process" to GO:0003199] * Changed name of GO:0003199 from "null" to "endocardial cushion cell to mesenchymal cell transition involved in valve formation" * Set definition of GO:0003199 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." * Added definition dbxref GOC:mtg_heart to GO:0003199 * Created link GO:0003199 -OBO_REL:is_a-> GO:0060317 * Assigned namespace "biological_process" to GO:0003199 * [Changed name of GO:0003200 from "null" to "endocardial cushion to mesenchymal transition involved in heart chamber septation", Set definition of GO:0003200 to "A transition where an endocardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of the heart septum.", Added definition dbxref GOC:mtg_heart to GO:0003200, Created link GO:0003200 -OBO_REL:is_a-> GO:0060317, Assigned namespace "biological_process" to GO:0003200] * Changed name of GO:0003200 from "null" to "endocardial cushion to mesenchymal transition involved in heart chamber septation" * Set definition of GO:0003200 to "A transition where an endocardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of the heart septum." * Added definition dbxref GOC:mtg_heart to GO:0003200 * Created link GO:0003200 -OBO_REL:is_a-> GO:0060317 * Assigned namespace "biological_process" to GO:0003200 * [Changed name of GO:0003201 from "null" to "epithelial to mesenchymal transition involved in coronary vasculature morphogenesis", Set definition of GO:0003201 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the shaping of the coronary vasculature.", Added definition dbxref GOC:mtg_heart to GO:0003201, Created link GO:0003201 -OBO_REL:is_a-> GO:0060317, Created link GO:0003201 -part_of-> GO:0060977, Assigned namespace "biological_process" to GO:0003201] * Changed name of GO:0003201 from "null" to "epithelial to mesenchymal transition involved in coronary vasculature morphogenesis" * Set definition of GO:0003201 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the shaping of the coronary vasculature." * Added definition dbxref GOC:mtg_heart to GO:0003201 * Created link GO:0003201 -OBO_REL:is_a-> GO:0060317 * Created link GO:0003201 -part_of-> GO:0060977 * Assigned namespace "biological_process" to GO:0003201 * [Changed name of GO:0003202 from "null" to "endocardial cushion to mesenchymal transition involved in cardiac skeleton development", Set definition of GO:0003202 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.", Added definition dbxref GOC:mtg_heart to GO:0003202, Created link GO:0003202 -OBO_REL:is_a-> GO:0060317, Assigned namespace "biological_process" to GO:0003202] * Changed name of GO:0003202 from "null" to "endocardial cushion to mesenchymal transition involved in cardiac skeleton development" * Set definition of GO:0003202 to "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." * Added definition dbxref GOC:mtg_heart to GO:0003202 * Created link GO:0003202 -OBO_REL:is_a-> GO:0060317 * Assigned namespace "biological_process" to GO:0003202 * [Changed name of GO:0003203 from "null" to "endocardial cushion morphogenesis", Set definition of GO:0003203 to "The process by which the anatomical structure of the endocardial cushion is generated and organized. An endothelium is an epithelium that lines an anatomical structure.", Added definition dbxref GOC:mtg_heart to GO:0003203, Created link GO:0003203 -OBO_REL:is_a-> GO:0003159, Created link GO:0003203 -part_of-> GO:0003160, Created link GO:0003203 -part_of-> GO:0003197, Assigned namespace "biological_process" to GO:0003203] * Changed name of GO:0003203 from "null" to "endocardial cushion morphogenesis" * Set definition of GO:0003203 to "The process by which the anatomical structure of the endocardial cushion is generated and organized. An endothelium is an epithelium that lines an anatomical structure." * Added definition dbxref GOC:mtg_heart to GO:0003203 * Created link GO:0003203 -OBO_REL:is_a-> GO:0003159 * Created link GO:0003203 -part_of-> GO:0003160 * Created link GO:0003203 -part_of-> GO:0003197 * Assigned namespace "biological_process" to GO:0003203 * Deleted GO:0001659 --OBO_REL:is_a--> GO:0032501 * Deleted GO:0001659 --OBO_REL:is_a--> GO:0042592 * Created link GO:0001659 -OBO_REL:is_a-> GO:0048871 * Changed definition of GO:0060981 from "The orderly movement of cells from one site to another that will contribute to the formation of new blood vessels in the heart pre-existing blood vessels." to "The orderly movement of cells from one site to another that will contribute to the formation of new blood vessels in the heart from pre-existing blood vessels." From gocvs at genome.stanford.edu Fri Oct 9 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 9 Oct 2009 21:30:13 -0700 Subject: [Go-diff] GO update 10/09/2009 Message-ID: <200910100430.n9A4UDXA019696@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.825 by 1.826 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created link GO:0010849 -OBO_REL:is_a-> GO:0010155 * Created link GO:0010964 -OBO_REL:is_a-> GO:0060966 * Created link GO:0030449 -OBO_REL:is_a-> GO:0010953 * Created link GO:0031935 -OBO_REL:is_a-> GO:0060968 * Created link GO:0031936 -OBO_REL:is_a-> GO:0060969 * Created link GO:0032415 -OBO_REL:is_a-> GO:0010155 * Created link GO:0045916 -OBO_REL:is_a-> GO:0010955 * Created link GO:0045917 -OBO_REL:is_a-> GO:0010954 * Created link GO:0046668 -OBO_REL:is_a-> GO:0050793 * Created link GO:0051511 -OBO_REL:is_a-> GO:0051129 * Created link GO:0051512 -OBO_REL:is_a-> GO:0051130 * Created link GO:0052371 -OBO_REL:is_a-> GO:0040012 * Created link GO:0060058 -OBO_REL:is_a-> GO:0051094 * Created link GO:0060147 -OBO_REL:is_a-> GO:0060968 * Created link GO:0060149 -OBO_REL:is_a-> GO:0060969 * Created link GO:0060906 -OBO_REL:is_a-> GO:0060967 * Created link GO:0060964 -OBO_REL:is_a-> GO:0060147 * Created link GO:0060965 -OBO_REL:is_a-> GO:0060149 * Created link GO:0070920 -OBO_REL:is_a-> GO:0060966 * Created link GO:0070948 -OBO_REL:is_a-> GO:0002886 * Created link GO:0070950 -OBO_REL:is_a-> GO:0031347 * Created link GO:0070950 -OBO_REL:is_a-> GO:0002831 * Created link GO:0070953 -OBO_REL:is_a-> GO:0002831 * Created link GO:0070953 -OBO_REL:is_a-> GO:0031347 From gocvs at genome.stanford.edu Mon Oct 12 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 12 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/12/2009 Message-ID: <200910130430.n9D4UCsR032638@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.826 by 1.828 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0000974 * Created object of type obo:TERM with id GO:0055125 * Created object of type obo:TERM with id GO:0055126 * [Changed name of GO:0000974 from "null" to "Prp19 complex", Set definition of GO:0000974 to "A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and mammals, though the exact composition varies. In S. cerevisiae, it contains Prp19p, Ntc20p, Snt309p, Isy1p, Syf2p, Cwc2p, Prp46p, Clf1p, Cef1p, and Syf1p.", Added definition dbxref GOC:krc to GO:0000974, Added definition dbxref PMID:16540691 to GO:0000974, Added definition dbxref PMID:19239890 to GO:0000974, Added general dbxref XX: to GO:0000974, Added synonym "nineteen complex" to GO:0000974, Changed synonym scope of GO:0000974 from "Related" to "Narrow", Added synonym "NTC" to GO:0000974, Added synonym "Prp19/CDC5 complex" to GO:0000974, Changed synonym scope of GO:0000974 from "Related" to "Narrow", Created link GO:0000974 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0000974] * Changed name of GO:0000974 from "null" to "Prp19 complex" * Set definition of GO:0000974 to "A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and mammals, though the exact composition varies. In S. cerevisiae, it contains Prp19p, Ntc20p, Snt309p, Isy1p, Syf2p, Cwc2p, Prp46p, Clf1p, Cef1p, and Syf1p." * Added definition dbxref GOC:krc to GO:0000974 * Added definition dbxref PMID:16540691 to GO:0000974 * Added definition dbxref PMID:19239890 to GO:0000974 * Added general dbxref XX: to GO:0000974 * Added synonym "nineteen complex" to GO:0000974 * Changed synonym scope of GO:0000974 from "Related" to "Narrow" * Added synonym "NTC" to GO:0000974 * Added synonym "Prp19/CDC5 complex" to GO:0000974 * Changed synonym scope of GO:0000974 from "Related" to "Narrow" * Created link GO:0000974 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0000974 * [Changed name of GO:0055125 from "null" to "Nic96 complex", Set definition of GO:0055125 to "A protein complex that forms part of the nuclear pore complex, and is required for its correct assembly. In Saccharomyces cerevisiae Nic96 contains Nsp1p, Nup57p, Nup49p, and Nic96p.", Added definition dbxref GOC:jh to GO:0055125, Added definition dbxref http://www.ebi.ac.uk/interpro to GO:0055125, Added definition dbxref PMID:12791264 to GO:0055125, Added definition dbxref PMID:15741174 to GO:0055125, Created link GO:0055125 -part_of-> GO:0005643, Created link GO:0055125 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0055125] * Changed name of GO:0055125 from "null" to "Nic96 complex" * Set definition of GO:0055125 to "A protein complex that forms part of the nuclear pore complex, and is required for its correct assembly. In Saccharomyces cerevisiae Nic96 contains Nsp1p, Nup57p, Nup49p, and Nic96p." * Added definition dbxref GOC:jh to GO:0055125 * Added definition dbxref http://www.ebi.ac.uk/interpro to GO:0055125 * Added definition dbxref PMID:12791264 to GO:0055125 * Added definition dbxref PMID:15741174 to GO:0055125 * Created link GO:0055125 -part_of-> GO:0005643 * Created link GO:0055125 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0055125 * [Changed name of GO:0055126 from "null" to "Nup82 complex", Set definition of GO:0055126 to "A protein complex that forms part of the nuclear pore complex. It forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p, and is required for proper localization of Nup116p. In Saccharomyces cerevisiae this complex contains Nup82p, Nsp1p, Nup159p, Nup116p, and Gle2p.", Added definition dbxref GOC:jh to GO:0055126, Added definition dbxref http://www.yeastgenome.org to GO:0055126, Added definition dbxref PMID:12791264 to GO:0055126, Added definition dbxref PMID:15741174 to GO:0055126, Created link GO:0055126 -OBO_REL:is_a-> GO:0043234, Created link GO:0055126 -part_of-> GO:0005643, Assigned namespace "cellular_component" to GO:0055126] * Changed name of GO:0055126 from "null" to "Nup82 complex" * Set definition of GO:0055126 to "A protein complex that forms part of the nuclear pore complex. It forms a subcomplex with Nup159p and Nsp1p, interacts with Nup116p, and is required for proper localization of Nup116p. In Saccharomyces cerevisiae this complex contains Nup82p, Nsp1p, Nup159p, Nup116p, and Gle2p." * Added definition dbxref GOC:jh to GO:0055126 * Added definition dbxref http://www.yeastgenome.org to GO:0055126 * Added definition dbxref PMID:12791264 to GO:0055126 * Added definition dbxref PMID:15741174 to GO:0055126 * Created link GO:0055126 -OBO_REL:is_a-> GO:0043234 * Created link GO:0055126 -part_of-> GO:0005643 * Assigned namespace "cellular_component" to GO:0055126 * Changed definition of GO:0031080 from "A subcomplex of the nuclear pore complex (NPC) mRNA export and NPC assembly. Contains conserved nucleoporins and other proteins; for example, the Saccharomyces complex contains Nup84p, Nup85p, Nup120p, Nup145p-C, Seh1p, Sec13p, and Nup133p." to "A subcomplex of the nuclear pore complex (NPC) involved in mRNA export and NPC assembly. Contains conserved nucleoporins and other proteins; for example, the Saccharomyces complex contains Nup84p, Nup85p, Nup120p, Nup145p-C, Seh1p, Sec13p, and Nup133p." * Created link GO:0071012 -has_part-> GO:0000974 * Created link GO:0071013 -has_part-> GO:0000974 From gocvs at genome.stanford.edu Tue Oct 13 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 13 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/13/2009 Message-ID: <200910140430.n9E4UCcc027742@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.828 by 1.832 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0002148 * Created object of type obo:TERM with id GO:0002149 * Created object of type obo:TERM with id GO:0002150 * Created object of type obo:TERM with id GO:0003204 * Created object of type obo:TERM with id GO:0003205 * Created object of type obo:TERM with id GO:0003206 * Created object of type obo:TERM with id GO:0003207 * Created object of type obo:TERM with id GO:0003208 * Created object of type obo:TERM with id GO:0003209 * Created object of type obo:TERM with id GO:0003210 * Created object of type obo:TERM with id GO:0003211 * Created object of type obo:TERM with id GO:0003212 * Created object of type obo:TERM with id GO:0003213 * Created object of type obo:TERM with id GO:0003214 * Created object of type obo:TERM with id GO:0003215 * Created object of type obo:TERM with id GO:0003216 * Created object of type obo:TERM with id GO:0003217 * Created object of type obo:TERM with id GO:0003218 * Created object of type obo:TERM with id GO:0003219 * Created object of type obo:TERM with id GO:0003220 * Created object of type obo:TERM with id GO:0003221 * Created object of type obo:TERM with id GO:0003222 * Created object of type obo:TERM with id GO:0003223 * Created object of type obo:TERM with id GO:0003224 * Created object of type obo:TERM with id GO:0003225 * Created object of type obo:TERM with id GO:0003226 * Created object of type obo:TERM with id GO:0003227 * Created object of type obo:TERM with id GO:0003228 * Created object of type obo:TERM with id GO:0003229 * Created object of type obo:TERM with id GO:0003230 * Created object of type obo:TERM with id GO:0003231 * Created object of type obo:TERM with id GO:0003232 * Created object of type obo:TERM with id GO:0003233 * Created object of type obo:TERM with id GO:0003234 * Created object of type obo:TERM with id GO:0003235 * Created object of type obo:TERM with id GO:0003236 * Created object of type obo:TERM with id GO:0003237 * Created object of type obo:TERM with id GO:0003238 * Created object of type obo:TERM with id GO:0003239 * Created object of type obo:TERM with id GO:0003240 * Created object of type obo:TERM with id GO:0003241 * Created object of type obo:TERM with id GO:0003242 * Created object of type obo:TERM with id GO:0003243 * Created object of type obo:TERM with id GO:0003244 * Created object of type obo:TERM with id GO:0003245 * Created object of type obo:TERM with id GO:0003246 * Created object of type obo:TERM with id GO:0003247 * Created object of type obo:TERM with id GO:0003248 * Created object of type obo:TERM with id GO:0003249 * Created object of type obo:TERM with id GO:0003250 * Created object of type obo:TERM with id GO:0003251 * Created object of type obo:TERM with id GO:0003252 * Created object of type obo:TERM with id GO:0003253 * Created object of type obo:TERM with id GO:0055127 * Created object of type obo:TERM with id GO:0055128 * [Changed name of GO:0002148 from "null" to "hypochlorous acid metabolic process", Set definition of GO:0002148 to "The chemical reactions and pathways involving hypochlorous acid.", Added definition dbxref GOC:add to GO:0002148, Added definition dbxref PMID:176150 to GO:0002148, Added definition dbxref PMIG:10085024 to GO:0002148, Added synonym "" to GO:0002148, Added synonym "HClO metabolic process" to GO:0002148, Changed synonym scope of GO:0002148 from "Related" to "Exact", Added synonym "HOCl metabolic process" to GO:0002148, Changed synonym scope of GO:0002148 from "Related" to "Exact", Added synonym "hypochlorite metabolic process" to GO:0002148, Added synonym "hypochlorous acid metabolism" to GO:0002148, Changed synonym scope of GO:0002148 from "Related" to "Exact", Created link GO:0002148 -OBO_REL:is_a-> GO:0070276, Assigned namespace "biological_process" to GO:0002148] * Changed name of GO:0002148 from "null" to "hypochlorous acid metabolic process" * Set definition of GO:0002148 to "The chemical reactions and pathways involving hypochlorous acid." * Added definition dbxref GOC:add to GO:0002148 * Added definition dbxref PMID:176150 to GO:0002148 * Added definition dbxref PMIG:10085024 to GO:0002148 * Added synonym "" to GO:0002148 * Added synonym "HClO metabolic process" to GO:0002148 * Changed synonym scope of GO:0002148 from "Related" to "Exact" * Added synonym "HOCl metabolic process" to GO:0002148 * Changed synonym scope of GO:0002148 from "Related" to "Exact" * Added synonym "hypochlorite metabolic process" to GO:0002148 * Added synonym "hypochlorous acid metabolism" to GO:0002148 * Changed synonym scope of GO:0002148 from "Related" to "Exact" * Created link GO:0002148 -OBO_REL:is_a-> GO:0070276 * Assigned namespace "biological_process" to GO:0002148 * [Changed name of GO:0002149 from "null" to "hypochlorous acid biosynthetic process", Added comment "Note that this reaction is catalyzed by myeloperoxidase in neutrophils.", Set definition of GO:0002149 to "The chemical reactions and pathways resulting in the formation of hypochlorous acid.", Added definition dbxref GOC:add to GO:0002149, Added definition dbxref PMID:10085024 to GO:0002149, Added definition dbxref PMID:176150 to GO:0002149, Added synonym "HClO biosynthetic process" to GO:0002149, Changed synonym scope of GO:0002149 from "Related" to "Exact", Added synonym "HOCl biosynthetic process" to GO:0002149, Changed synonym scope of GO:0002149 from "Related" to "Exact", Added synonym "hypochlorite biosynthetic process" to GO:0002149, Added synonym "hypochlorous acid biosynthesis" to GO:0002149, Changed synonym scope of GO:0002149 from "Related" to "Exact", Created link GO:0002149 -OBO_REL:is_a-> GO:0002148, Assigned namespace "biological_process" to GO:0002149] * Changed name of GO:0002149 from "null" to "hypochlorous acid biosynthetic process" * Added comment "Note that this reaction is catalyzed by myeloperoxidase in neutrophils." * Set definition of GO:0002149 to "The chemical reactions and pathways resulting in the formation of hypochlorous acid." * Added definition dbxref GOC:add to GO:0002149 * Added definition dbxref PMID:10085024 to GO:0002149 * Added definition dbxref PMID:176150 to GO:0002149 * Added synonym "HClO biosynthetic process" to GO:0002149 * Changed synonym scope of GO:0002149 from "Related" to "Exact" * Added synonym "HOCl biosynthetic process" to GO:0002149 * Changed synonym scope of GO:0002149 from "Related" to "Exact" * Added synonym "hypochlorite biosynthetic process" to GO:0002149 * Added synonym "hypochlorous acid biosynthesis" to GO:0002149 * Changed synonym scope of GO:0002149 from "Related" to "Exact" * Created link GO:0002149 -OBO_REL:is_a-> GO:0002148 * Assigned namespace "biological_process" to GO:0002149 * [Changed name of GO:0002150 from "null" to "hypochlorous acid catabolic process", Set definition of GO:0002150 to "The chemical reactions and pathways resulting in the breakdown of hypochlorous acid.", Added definition dbxref GOC:add to GO:0002150, Added synonym "HClO catabolic process" to GO:0002150, Changed synonym scope of GO:0002150 from "Related" to "Exact", Added synonym "HOCl catabolic process" to GO:0002150, Changed synonym scope of GO:0002150 from "Related" to "Exact", Added synonym "hypochlorite catabolic process" to GO:0002150, Added synonym "hypochlorous acid catabolism" to GO:0002150, Changed synonym scope of GO:0002150 from "Related" to "Exact", Created link GO:0002150 -OBO_REL:is_a-> GO:0002148, Assigned namespace "biological_process" to GO:0002150] * Changed name of GO:0002150 from "null" to "hypochlorous acid catabolic process" * Set definition of GO:0002150 to "The chemical reactions and pathways resulting in the breakdown of hypochlorous acid." * Added definition dbxref GOC:add to GO:0002150 * Added synonym "HClO catabolic process" to GO:0002150 * Changed synonym scope of GO:0002150 from "Related" to "Exact" * Added synonym "HOCl catabolic process" to GO:0002150 * Changed synonym scope of GO:0002150 from "Related" to "Exact" * Added synonym "hypochlorite catabolic process" to GO:0002150 * Added synonym "hypochlorous acid catabolism" to GO:0002150 * Changed synonym scope of GO:0002150 from "Related" to "Exact" * Created link GO:0002150 -OBO_REL:is_a-> GO:0002148 * Assigned namespace "biological_process" to GO:0002150 * [Changed name of GO:0003204 from "null" to "cardiac skeleton development", Set definition of GO:0003204 to "The progression of the cardiac skeleton over time, from its formation to the mature structure. The cardiac skeleton is a specialized extracellular matrix that provides physical support for the heart.", Added definition dbxref GOC:mtg_heart to GO:0003204, Created link GO:0003204 -OBO_REL:is_a-> GO:0048856, Created link GO:0003204 -part_of-> GO:0007507, Assigned namespace "biological_process" to GO:0003204] * Changed name of GO:0003204 from "null" to "cardiac skeleton development" * Set definition of GO:0003204 to "The progression of the cardiac skeleton over time, from its formation to the mature structure. The cardiac skeleton is a specialized extracellular matrix that provides physical support for the heart." * Added definition dbxref GOC:mtg_heart to GO:0003204 * Created link GO:0003204 -OBO_REL:is_a-> GO:0048856 * Created link GO:0003204 -part_of-> GO:0007507 * Assigned namespace "biological_process" to GO:0003204 * [Changed name of GO:0003205 from "null" to "cardiac chamber development", Set definition of GO:0003205 to "The progression of a cardiac chamber over time, from its formation to the mature structure. A cardiac chamber is an enclosed cavity within the heart.", Added definition dbxref GOC:mtg_heart to GO:0003205, Added general dbxref GOC:mtg_heart to GO:0003205, Created link GO:0003205 -part_of-> GO:0007507, Created link GO:0003205 -OBO_REL:is_a-> GO:0048856, Assigned namespace "biological_process" to GO:0003205] * Changed name of GO:0003205 from "null" to "cardiac chamber development" * Set definition of GO:0003205 to "The progression of a cardiac chamber over time, from its formation to the mature structure. A cardiac chamber is an enclosed cavity within the heart." * Added definition dbxref GOC:mtg_heart to GO:0003205 * Added general dbxref GOC:mtg_heart to GO:0003205 * Created link GO:0003205 -part_of-> GO:0007507 * Created link GO:0003205 -OBO_REL:is_a-> GO:0048856 * Assigned namespace "biological_process" to GO:0003205 * [Changed name of GO:0003206 from "null" to "cardiac chamber morphogenesis", Set definition of GO:0003206 to "The process by which a cardiac chamber is generated and organized. A cardiac chamber is an enclosed cavity within the heart.", Added definition dbxref GOC:mtg_heart to GO:0003206, Added synonym "heart chamber morphogenesis" to GO:0003206, Added general dbxref GOC:mtg_heart to synonym heart chamber morphogenesis of GO:0003206, Changed synonym scope of GO:0003206 from "Related" to "Exact", Created link GO:0003206 -part_of-> GO:0003007, Created link GO:0003206 -part_of-> GO:0003205, Created link GO:0003206 -OBO_REL:is_a-> GO:0009653, Assigned namespace "biological_process" to GO:0003206] * Changed name of GO:0003206 from "null" to "cardiac chamber morphogenesis" * Set definition of GO:0003206 to "The process by which a cardiac chamber is generated and organized. A cardiac chamber is an enclosed cavity within the heart." * Added definition dbxref GOC:mtg_heart to GO:0003206 * Added synonym "heart chamber morphogenesis" to GO:0003206 * Added general dbxref GOC:mtg_heart to synonym heart chamber morphogenesis of GO:0003206 * Changed synonym scope of GO:0003206 from "Related" to "Exact" * Created link GO:0003206 -part_of-> GO:0003007 * Created link GO:0003206 -part_of-> GO:0003205 * Created link GO:0003206 -OBO_REL:is_a-> GO:0009653 * Assigned namespace "biological_process" to GO:0003206 * [Changed name of GO:0003207 from "null" to "cardiac chamber formation", Set definition of GO:0003207 to "The developmental process pertaining to the initial formation of a cardiac chamber from unspecified parts. A cardiac chamber is an enclosed cavity within the heart.", Added definition dbxref GOC:mtg_heart to GO:0003207, Added synonym "heart chamber formation" to GO:0003207, Added general dbxref GOC:mtg_heart to synonym heart chamber formation of GO:0003207, Changed synonym scope of GO:0003207 from "Related" to "Exact", Created link GO:0003207 -part_of-> GO:0003206, Created link GO:0003207 -OBO_REL:is_a-> GO:0048646, Assigned namespace "biological_process" to GO:0003207] * Changed name of GO:0003207 from "null" to "cardiac chamber formation" * Set definition of GO:0003207 to "The developmental process pertaining to the initial formation of a cardiac chamber from unspecified parts. A cardiac chamber is an enclosed cavity within the heart." * Added definition dbxref GOC:mtg_heart to GO:0003207 * Added synonym "heart chamber formation" to GO:0003207 * Added general dbxref GOC:mtg_heart to synonym heart chamber formation of GO:0003207 * Changed synonym scope of GO:0003207 from "Related" to "Exact" * Created link GO:0003207 -part_of-> GO:0003206 * Created link GO:0003207 -OBO_REL:is_a-> GO:0048646 * Assigned namespace "biological_process" to GO:0003207 * [Changed name of GO:0003208 from "null" to "cardiac ventricle morphogenesis", Set definition of GO:0003208 to "The process by which the cardiac ventricle is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003208, Created link GO:0003208 -OBO_REL:is_a-> GO:0003206, Assigned namespace "biological_process" to GO:0003208] * Changed name of GO:0003208 from "null" to "cardiac ventricle morphogenesis" * Set definition of GO:0003208 to "The process by which the cardiac ventricle is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003208 * Created link GO:0003208 -OBO_REL:is_a-> GO:0003206 * Assigned namespace "biological_process" to GO:0003208 * [Changed name of GO:0003209 from "null" to "cardiac atrium morphogenesis", Set definition of GO:0003209 to "The process by which the cardiac atrium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003209, Created link GO:0003209 -OBO_REL:is_a-> GO:0003206, Created link GO:0003209 -part_of-> GO:0003230, Assigned namespace "biological_process" to GO:0003209] * Changed name of GO:0003209 from "null" to "cardiac atrium morphogenesis" * Set definition of GO:0003209 to "The process by which the cardiac atrium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003209 * Created link GO:0003209 -OBO_REL:is_a-> GO:0003206 * Created link GO:0003209 -part_of-> GO:0003230 * Assigned namespace "biological_process" to GO:0003209 * [Changed name of GO:0003210 from "null" to "cardiac atrium formation", Set definition of GO:0003210 to "The developmental process pertaining to the initial formation of a cardiac atrium from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003210, Created link GO:0003210 -part_of-> GO:0003209, Created link GO:0003210 -part_of-> GO:0003213, Created link GO:0003210 -OBO_REL:is_a-> GO:0003207, Assigned namespace "biological_process" to GO:0003210] * Changed name of GO:0003210 from "null" to "cardiac atrium formation" * Set definition of GO:0003210 to "The developmental process pertaining to the initial formation of a cardiac atrium from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003210 * Created link GO:0003210 -part_of-> GO:0003209 * Created link GO:0003210 -part_of-> GO:0003213 * Created link GO:0003210 -OBO_REL:is_a-> GO:0003207 * Assigned namespace "biological_process" to GO:0003210 * [Changed name of GO:0003211 from "null" to "cardiac ventricle formation", Set definition of GO:0003211 to "The developmental process pertaining to the initial formation of a cardiac ventricle from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003211, Created link GO:0003211 -OBO_REL:is_a-> GO:0003207, Created link GO:0003211 -part_of-> GO:0003208, Assigned namespace "biological_process" to GO:0003211] * Changed name of GO:0003211 from "null" to "cardiac ventricle formation" * Set definition of GO:0003211 to "The developmental process pertaining to the initial formation of a cardiac ventricle from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003211 * Created link GO:0003211 -OBO_REL:is_a-> GO:0003207 * Created link GO:0003211 -part_of-> GO:0003208 * Assigned namespace "biological_process" to GO:0003211 * [Changed name of GO:0003212 from "null" to "cardiac left atrium morphogenesis", Set definition of GO:0003212 to "The process by which the cardiac left atrium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003212, Created link GO:0003212 -OBO_REL:is_a-> GO:0003209, Assigned namespace "biological_process" to GO:0003212] * Changed name of GO:0003212 from "null" to "cardiac left atrium morphogenesis" * Set definition of GO:0003212 to "The process by which the cardiac left atrium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003212 * Created link GO:0003212 -OBO_REL:is_a-> GO:0003209 * Assigned namespace "biological_process" to GO:0003212 * [Changed name of GO:0003213 from "null" to "cardiac right atrium morphogenesis", Set definition of GO:0003213 to "The process by which the cardiac right atrium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003213, Created link GO:0003213 -OBO_REL:is_a-> GO:0003209, Assigned namespace "biological_process" to GO:0003213] * Changed name of GO:0003213 from "null" to "cardiac right atrium morphogenesis" * Set definition of GO:0003213 to "The process by which the cardiac right atrium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003213 * Created link GO:0003213 -OBO_REL:is_a-> GO:0003209 * Assigned namespace "biological_process" to GO:0003213 * [Changed name of GO:0003214 from "null" to "cardiac left ventricle morphogenesis", Set definition of GO:0003214 to "The process by which the cardiac left ventricle is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003214, Created link GO:0003214 -OBO_REL:is_a-> GO:0003208, Assigned namespace "biological_process" to GO:0003214] * Changed name of GO:0003214 from "null" to "cardiac left ventricle morphogenesis" * Set definition of GO:0003214 to "The process by which the cardiac left ventricle is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003214 * Created link GO:0003214 -OBO_REL:is_a-> GO:0003208 * Assigned namespace "biological_process" to GO:0003214 * [Changed name of GO:0003215 from "null" to "cardiac right ventricle morphogenesis", Set definition of GO:0003215 to "The process by which the cardiac right ventricle is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003215, Created link GO:0003215 -OBO_REL:is_a-> GO:0003208, Assigned namespace "biological_process" to GO:0003215] * Changed name of GO:0003215 from "null" to "cardiac right ventricle morphogenesis" * Set definition of GO:0003215 to "The process by which the cardiac right ventricle is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003215 * Created link GO:0003215 -OBO_REL:is_a-> GO:0003208 * Assigned namespace "biological_process" to GO:0003215 * [Changed name of GO:0003216 from "null" to "cardiac left atrium formation", Set definition of GO:0003216 to "The developmental process pertaining to the initial formation of a cardiac left atrium from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003216, Created link GO:0003216 -OBO_REL:is_a-> GO:0003210, Created link GO:0003216 -part_of-> GO:0003212, Assigned namespace "biological_process" to GO:0003216] * Changed name of GO:0003216 from "null" to "cardiac left atrium formation" * Set definition of GO:0003216 to "The developmental process pertaining to the initial formation of a cardiac left atrium from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003216 * Created link GO:0003216 -OBO_REL:is_a-> GO:0003210 * Created link GO:0003216 -part_of-> GO:0003212 * Assigned namespace "biological_process" to GO:0003216 * [Changed name of GO:0003217 from "null" to "cardiac right atrium formation", Set definition of GO:0003217 to "The developmental process pertaining to the initial formation of a cardiac right atrium from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003217, Created link GO:0003217 -OBO_REL:is_a-> GO:0003210, Assigned namespace "biological_process" to GO:0003217] * Changed name of GO:0003217 from "null" to "cardiac right atrium formation" * Set definition of GO:0003217 to "The developmental process pertaining to the initial formation of a cardiac right atrium from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003217 * Created link GO:0003217 -OBO_REL:is_a-> GO:0003210 * Assigned namespace "biological_process" to GO:0003217 * [Changed name of GO:0003218 from "null" to "cardiac left ventricle formation", Set definition of GO:0003218 to "The developmental process pertaining to the initial formation of a cardiac left ventricle from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003218, Created link GO:0003218 -part_of-> GO:0003214, Created link GO:0003218 -OBO_REL:is_a-> GO:0003211, Assigned namespace "biological_process" to GO:0003218] * Changed name of GO:0003218 from "null" to "cardiac left ventricle formation" * Set definition of GO:0003218 to "The developmental process pertaining to the initial formation of a cardiac left ventricle from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003218 * Created link GO:0003218 -part_of-> GO:0003214 * Created link GO:0003218 -OBO_REL:is_a-> GO:0003211 * Assigned namespace "biological_process" to GO:0003218 * [Changed name of GO:0003219 from "null" to "cardiac right ventricle formation", Set definition of GO:0003219 to "The developmental process pertaining to the initial formation of a cardiac right ventricle from unspecified parts.", Added definition dbxref GOC:mtg_heart to GO:0003219, Created link GO:0003219 -OBO_REL:is_a-> GO:0003211, Created link GO:0003219 -part_of-> GO:0003215, Assigned namespace "biological_process" to GO:0003219] * Changed name of GO:0003219 from "null" to "cardiac right ventricle formation" * Set definition of GO:0003219 to "The developmental process pertaining to the initial formation of a cardiac right ventricle from unspecified parts." * Added definition dbxref GOC:mtg_heart to GO:0003219 * Created link GO:0003219 -OBO_REL:is_a-> GO:0003211 * Created link GO:0003219 -part_of-> GO:0003215 * Assigned namespace "biological_process" to GO:0003219 * [Changed name of GO:0003220 from "null" to "left ventricular cardiac muscle tissue morphogenesis", Set definition of GO:0003220 to "The process by which the anatomical structures of left cardiac ventricle muscle is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003220, Added synonym "left ventricular myocardium morphogenesis" to GO:0003220, Added general dbxref GOC:mtg_heart to synonym left ventricular myocardium morphogenesis of GO:0003220, Changed synonym scope of GO:0003220 from "Related" to "Exact", Created link GO:0003220 -OBO_REL:is_a-> GO:0055010, Assigned namespace "biological_process" to GO:0003220] * Changed name of GO:0003220 from "null" to "left ventricular cardiac muscle tissue morphogenesis" * Set definition of GO:0003220 to "The process by which the anatomical structures of left cardiac ventricle muscle is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003220 * Added synonym "left ventricular myocardium morphogenesis" to GO:0003220 * Added general dbxref GOC:mtg_heart to synonym left ventricular myocardium morphogenesis of GO:0003220 * Changed synonym scope of GO:0003220 from "Related" to "Exact" * Created link GO:0003220 -OBO_REL:is_a-> GO:0055010 * Assigned namespace "biological_process" to GO:0003220 * [Changed name of GO:0003221 from "null" to "right ventricular cardiac muscle tissue morphogenesis", Set definition of GO:0003221 to "The process by which the anatomical structures of the right cardiac ventricle muscle is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003221, Added synonym "right ventricle myocardium morphogenesis" to GO:0003221, Added general dbxref GOC:mtg_heart to synonym right ventricle myocardium morphogenesis of GO:0003221, Changed synonym scope of GO:0003221 from "Related" to "Exact", Created link GO:0003221 -OBO_REL:is_a-> GO:0055010, Assigned namespace "biological_process" to GO:0003221] * Changed name of GO:0003221 from "null" to "right ventricular cardiac muscle tissue morphogenesis" * Set definition of GO:0003221 to "The process by which the anatomical structures of the right cardiac ventricle muscle is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003221 * Added synonym "right ventricle myocardium morphogenesis" to GO:0003221 * Added general dbxref GOC:mtg_heart to synonym right ventricle myocardium morphogenesis of GO:0003221 * Changed synonym scope of GO:0003221 from "Related" to "Exact" * Created link GO:0003221 -OBO_REL:is_a-> GO:0055010 * Assigned namespace "biological_process" to GO:0003221 * [Changed name of GO:0003222 from "null" to "ventricular trabecular myocardium morphogenesis", Set definition of GO:0003222 to "The process by which the anatomical structures of the trabecular cardiac ventricle muscle is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003222, Created link GO:0003222 -OBO_REL:is_a-> GO:0055010, Assigned namespace "biological_process" to GO:0003222] * Changed name of GO:0003222 from "null" to "ventricular trabecular myocardium morphogenesis" * Set definition of GO:0003222 to "The process by which the anatomical structures of the trabecular cardiac ventricle muscle is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003222 * Created link GO:0003222 -OBO_REL:is_a-> GO:0055010 * Assigned namespace "biological_process" to GO:0003222 * [Changed name of GO:0003223 from "null" to "ventricular compact myocardium morphogenesis", Set definition of GO:0003223 to "The process by which the anatomical structures of the compact cardiac ventricle muscle is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003223, Created link GO:0003223 -OBO_REL:is_a-> GO:0055010, Assigned namespace "biological_process" to GO:0003223] * Changed name of GO:0003223 from "null" to "ventricular compact myocardium morphogenesis" * Set definition of GO:0003223 to "The process by which the anatomical structures of the compact cardiac ventricle muscle is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003223 * Created link GO:0003223 -OBO_REL:is_a-> GO:0055010 * Assigned namespace "biological_process" to GO:0003223 * [Changed name of GO:0003224 from "null" to "left ventricular compact myocardium morphogenesis", Set definition of GO:0003224 to "The process by which the anatomical structures of cardiac left ventricular compact myocardium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003224, Created link GO:0003224 -OBO_REL:is_a-> GO:0003220, Created link GO:0003224 -OBO_REL:is_a-> GO:0003223, Assigned namespace "biological_process" to GO:0003224] * Changed name of GO:0003224 from "null" to "left ventricular compact myocardium morphogenesis" * Set definition of GO:0003224 to "The process by which the anatomical structures of cardiac left ventricular compact myocardium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003224 * Created link GO:0003224 -OBO_REL:is_a-> GO:0003220 * Created link GO:0003224 -OBO_REL:is_a-> GO:0003223 * Assigned namespace "biological_process" to GO:0003224 * [Changed name of GO:0003225 from "null" to "left ventricular trabecular myocardium morphogenesis", Set definition of GO:0003225 to "The process by which the anatomical structures of cardiac left ventricular trabecular myocardium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003225, Created link GO:0003225 -OBO_REL:is_a-> GO:0003222, Created link GO:0003225 -OBO_REL:is_a-> GO:0003220, Assigned namespace "biological_process" to GO:0003225] * Changed name of GO:0003225 from "null" to "left ventricular trabecular myocardium morphogenesis" * Set definition of GO:0003225 to "The process by which the anatomical structures of cardiac left ventricular trabecular myocardium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003225 * Created link GO:0003225 -OBO_REL:is_a-> GO:0003222 * Created link GO:0003225 -OBO_REL:is_a-> GO:0003220 * Assigned namespace "biological_process" to GO:0003225 * [Changed name of GO:0003226 from "null" to "right ventricular compact myocardium morphogenesis", Set definition of GO:0003226 to "The process by which the anatomical structures of the right ventricular compact myocardium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003226, Created link GO:0003226 -OBO_REL:is_a-> GO:0003221, Created link GO:0003226 -OBO_REL:is_a-> GO:0003223, Assigned namespace "biological_process" to GO:0003226] * Changed name of GO:0003226 from "null" to "right ventricular compact myocardium morphogenesis" * Set definition of GO:0003226 to "The process by which the anatomical structures of the right ventricular compact myocardium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003226 * Created link GO:0003226 -OBO_REL:is_a-> GO:0003221 * Created link GO:0003226 -OBO_REL:is_a-> GO:0003223 * Assigned namespace "biological_process" to GO:0003226 * [Changed name of GO:0003227 from "null" to "right ventricular trabecular myocardium morphogenesis", Set definition of GO:0003227 to "The process by which the anatomical structures of the right ventricular myocardium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003227, Created link GO:0003227 -OBO_REL:is_a-> GO:0003222, Created link GO:0003227 -OBO_REL:is_a-> GO:0003221, Assigned namespace "biological_process" to GO:0003227] * Changed name of GO:0003227 from "null" to "right ventricular trabecular myocardium morphogenesis" * Set definition of GO:0003227 to "The process by which the anatomical structures of the right ventricular myocardium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003227 * Created link GO:0003227 -OBO_REL:is_a-> GO:0003222 * Created link GO:0003227 -OBO_REL:is_a-> GO:0003221 * Assigned namespace "biological_process" to GO:0003227 * [Changed name of GO:0003228 from "null" to "atrial cardiac muscle tissue development", Set definition of GO:0003228 to "The process whose specific outcome is the progression of cardiac muscle of the atrium over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003228, Added synonym "atrial myocardium development" to GO:0003228, Added general dbxref GOC:mtg_heart to synonym atrial myocardium development of GO:0003228, Changed synonym scope of GO:0003228 from "Related" to "Exact", Created link GO:0003228 -OBO_REL:is_a-> GO:0048738, Assigned namespace "biological_process" to GO:0003228] * Changed name of GO:0003228 from "null" to "atrial cardiac muscle tissue development" * Set definition of GO:0003228 to "The process whose specific outcome is the progression of cardiac muscle of the atrium over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003228 * Added synonym "atrial myocardium development" to GO:0003228 * Added general dbxref GOC:mtg_heart to synonym atrial myocardium development of GO:0003228 * Changed synonym scope of GO:0003228 from "Related" to "Exact" * Created link GO:0003228 -OBO_REL:is_a-> GO:0048738 * Assigned namespace "biological_process" to GO:0003228 * [Changed name of GO:0003229 from "null" to "ventricular cardiac muscle tissue development", Set definition of GO:0003229 to "The process whose specific outcome is the progression of ventricular cardiac muscle over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003229, Added synonym "ventricular myocardium development" to GO:0003229, Added general dbxref GOC:mtg_heart to synonym ventricular myocardium development of GO:0003229, Changed synonym scope of GO:0003229 from "Related" to "Exact", Created link GO:0003229 -OBO_REL:is_a-> GO:0048738, Assigned namespace "biological_process" to GO:0003229] * Changed name of GO:0003229 from "null" to "ventricular cardiac muscle tissue development" * Set definition of GO:0003229 to "The process whose specific outcome is the progression of ventricular cardiac muscle over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003229 * Added synonym "ventricular myocardium development" to GO:0003229 * Added general dbxref GOC:mtg_heart to synonym ventricular myocardium development of GO:0003229 * Changed synonym scope of GO:0003229 from "Related" to "Exact" * Created link GO:0003229 -OBO_REL:is_a-> GO:0048738 * Assigned namespace "biological_process" to GO:0003229 * [Changed name of GO:0003230 from "null" to "cardiac atrium development", Set definition of GO:0003230 to "The process whose specific outcome is the progression of a cardiac ventricle over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003230, Created link GO:0003230 -part_of-> GO:0003231, Created link GO:0003230 -OBO_REL:is_a-> GO:0003205, Assigned namespace "biological_process" to GO:0003230] * Changed name of GO:0003230 from "null" to "cardiac atrium development" * Set definition of GO:0003230 to "The process whose specific outcome is the progression of a cardiac ventricle over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003230 * Created link GO:0003230 -part_of-> GO:0003231 * Created link GO:0003230 -OBO_REL:is_a-> GO:0003205 * Assigned namespace "biological_process" to GO:0003230 * [Changed name of GO:0003231 from "null" to "cardiac ventricle development", Set definition of GO:0003231 to "The process whose specific outcome is the progression of a cardiac ventricle over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003231, Created link GO:0003231 -OBO_REL:is_a-> GO:0003205, Assigned namespace "biological_process" to GO:0003231] * Changed name of GO:0003231 from "null" to "cardiac ventricle development" * Set definition of GO:0003231 to "The process whose specific outcome is the progression of a cardiac ventricle over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003231 * Created link GO:0003231 -OBO_REL:is_a-> GO:0003205 * Assigned namespace "biological_process" to GO:0003231 * [Changed name of GO:0003232 from "null" to "bulbus arteriosus development", Set definition of GO:0003232 to "The process whose specific outcome is the progression of the bulbous arteriosus over time, from its formation to the mature structure. The bulbous arteriosus is an elastic heart chamber.", Added definition dbxref GOC:mtg_heart to GO:0003232, Created link GO:0003232 -OBO_REL:is_a-> GO:0003205, Assigned namespace "biological_process" to GO:0003232] * Changed name of GO:0003232 from "null" to "bulbus arteriosus development" * Set definition of GO:0003232 to "The process whose specific outcome is the progression of the bulbous arteriosus over time, from its formation to the mature structure. The bulbous arteriosus is an elastic heart chamber." * Added definition dbxref GOC:mtg_heart to GO:0003232 * Created link GO:0003232 -OBO_REL:is_a-> GO:0003205 * Assigned namespace "biological_process" to GO:0003232 * [Changed name of GO:0003233 from "null" to "bulbus arteriosus morphogenesis", Set definition of GO:0003233 to "The process by which the bulbus arteriosus is generated and organized. The bulbus arteriosus is an elastic cardiac chamber.", Added definition dbxref GOC:mtg_heart to GO:0003233, Created link GO:0003233 -OBO_REL:is_a-> GO:0003206, Created link GO:0003233 -part_of-> GO:0003232, Assigned namespace "biological_process" to GO:0003233] * Changed name of GO:0003233 from "null" to "bulbus arteriosus morphogenesis" * Set definition of GO:0003233 to "The process by which the bulbus arteriosus is generated and organized. The bulbus arteriosus is an elastic cardiac chamber." * Added definition dbxref GOC:mtg_heart to GO:0003233 * Created link GO:0003233 -OBO_REL:is_a-> GO:0003206 * Created link GO:0003233 -part_of-> GO:0003232 * Assigned namespace "biological_process" to GO:0003233 * [Changed name of GO:0003234 from "null" to "bulbus arteriosus formation", Set definition of GO:0003234 to "The developmental process pertaining to the initial formation of the bulbus arteriosus from unspecified parts. The bulbus arteriosus is an elastic chamber of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003234, Created link GO:0003234 -OBO_REL:is_a-> GO:0003207, Created link GO:0003234 -part_of-> GO:0003233, Assigned namespace "biological_process" to GO:0003234] * Changed name of GO:0003234 from "null" to "bulbus arteriosus formation" * Set definition of GO:0003234 to "The developmental process pertaining to the initial formation of the bulbus arteriosus from unspecified parts. The bulbus arteriosus is an elastic chamber of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003234 * Created link GO:0003234 -OBO_REL:is_a-> GO:0003207 * Created link GO:0003234 -part_of-> GO:0003233 * Assigned namespace "biological_process" to GO:0003234 * [Changed name of GO:0003235 from "null" to "sinus venosus development", Set definition of GO:0003235 to "The progression of the sinus venosus over time, from its formation to the mature structure. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart.", Added definition dbxref GOC:mtg_heart to GO:0003235, Created link GO:0003235 -OBO_REL:is_a-> GO:0003205, Assigned namespace "biological_process" to GO:0003235] * Changed name of GO:0003235 from "null" to "sinus venosus development" * Set definition of GO:0003235 to "The progression of the sinus venosus over time, from its formation to the mature structure. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart." * Added definition dbxref GOC:mtg_heart to GO:0003235 * Created link GO:0003235 -OBO_REL:is_a-> GO:0003205 * Assigned namespace "biological_process" to GO:0003235 * [Changed name of GO:0003236 from "null" to "sinus venosus morphogenesis", Set definition of GO:0003236 to "The process by which the sinus venosus is generated and organized. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart.", Added definition dbxref GOC:mtg_heart to GO:0003236, Created link GO:0003236 -part_of-> GO:0003235, Created link GO:0003236 -OBO_REL:is_a-> GO:0003206, Assigned namespace "biological_process" to GO:0003236] * Changed name of GO:0003236 from "null" to "sinus venosus morphogenesis" * Set definition of GO:0003236 to "The process by which the sinus venosus is generated and organized. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart." * Added definition dbxref GOC:mtg_heart to GO:0003236 * Created link GO:0003236 -part_of-> GO:0003235 * Created link GO:0003236 -OBO_REL:is_a-> GO:0003206 * Assigned namespace "biological_process" to GO:0003236 * [Changed name of GO:0003237 from "null" to "sinus venosus formation", Set definition of GO:0003237 to "The developmental process pertaining to the initial formation of the sinus venosus from unspecified parts. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart.", Added definition dbxref GOC:mtg_heart to GO:0003237, Created link GO:0003237 -part_of-> GO:0003236, Created link GO:0003237 -OBO_REL:is_a-> GO:0003207, Assigned namespace "biological_process" to GO:0003237] * Changed name of GO:0003237 from "null" to "sinus venosus formation" * Set definition of GO:0003237 to "The developmental process pertaining to the initial formation of the sinus venosus from unspecified parts. The sinus venosus is a heart chamber attached to the atrium on the venous side of the embryonic heart." * Added definition dbxref GOC:mtg_heart to GO:0003237 * Created link GO:0003237 -part_of-> GO:0003236 * Created link GO:0003237 -OBO_REL:is_a-> GO:0003207 * Assigned namespace "biological_process" to GO:0003237 * [Changed name of GO:0003238 from "null" to "conus arteriosus development", Set definition of GO:0003238 to "The progression of the conus arteriosus over time, from its formation to the mature structure. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk.", Added definition dbxref GOC:mtg_heart to GO:0003238, Created link GO:0003238 -OBO_REL:is_a-> GO:0003205, Assigned namespace "biological_process" to GO:0003238] * Changed name of GO:0003238 from "null" to "conus arteriosus development" * Set definition of GO:0003238 to "The progression of the conus arteriosus over time, from its formation to the mature structure. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk." * Added definition dbxref GOC:mtg_heart to GO:0003238 * Created link GO:0003238 -OBO_REL:is_a-> GO:0003205 * Assigned namespace "biological_process" to GO:0003238 * [Changed name of GO:0003239 from "null" to "conus arteriosus morphogenesis", Set definition of GO:0003239 to "The process by which the conus arteriosus is generated and organized. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk.", Added definition dbxref GOC:mtg_heart to GO:0003239, Created link GO:0003239 -OBO_REL:is_a-> GO:0003206, Created link GO:0003239 -part_of-> GO:0003238, Assigned namespace "biological_process" to GO:0003239] * Changed name of GO:0003239 from "null" to "conus arteriosus morphogenesis" * Set definition of GO:0003239 to "The process by which the conus arteriosus is generated and organized. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk." * Added definition dbxref GOC:mtg_heart to GO:0003239 * Created link GO:0003239 -OBO_REL:is_a-> GO:0003206 * Created link GO:0003239 -part_of-> GO:0003238 * Assigned namespace "biological_process" to GO:0003239 * [Changed name of GO:0003240 from "null" to "conus arteriosus formation", Set definition of GO:0003240 to "The developmental process pertaining to the initial formation of the conus arteriosus from unspecified parts. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk.", Added definition dbxref GOC:mtg_heart to GO:0003240, Created link GO:0003240 -OBO_REL:is_a-> GO:0003207, Created link GO:0003240 -part_of-> GO:0003239, Assigned namespace "biological_process" to GO:0003240] * Changed name of GO:0003240 from "null" to "conus arteriosus formation" * Set definition of GO:0003240 to "The developmental process pertaining to the initial formation of the conus arteriosus from unspecified parts. The conus arteriosus is a valved chamber with thick muscular walls stemming from the ventricle and connecting to the pulmonary trunk." * Added definition dbxref GOC:mtg_heart to GO:0003240 * Created link GO:0003240 -OBO_REL:is_a-> GO:0003207 * Created link GO:0003240 -part_of-> GO:0003239 * Assigned namespace "biological_process" to GO:0003240 * [Changed name of GO:0003241 from "null" to "growth involved in heart morphogenesis", Set definition of GO:0003241 to "Developmental growth that contributes to the shaping of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003241, Created link GO:0003241 -OBO_REL:is_a-> GO:0060560, Created link GO:0003241 -part_of-> GO:0060419, Created link GO:0003241 -part_of-> GO:0003007, Assigned namespace "biological_process" to GO:0003241] * Changed name of GO:0003241 from "null" to "growth involved in heart morphogenesis" * Set definition of GO:0003241 to "Developmental growth that contributes to the shaping of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003241 * Created link GO:0003241 -OBO_REL:is_a-> GO:0060560 * Created link GO:0003241 -part_of-> GO:0060419 * Created link GO:0003241 -part_of-> GO:0003007 * Assigned namespace "biological_process" to GO:0003241 * [Changed name of GO:0003242 from "null" to "cardiac chamber ballooning", Set definition of GO:0003242 to "The morphogenic growth in which the chambers of the heart expand in size, contributing to their shaping.", Added definition dbxref GOC:mtg_heart to GO:0003242, Created link GO:0003242 -part_of-> GO:0003206, Created link GO:0003242 -OBO_REL:is_a-> GO:0003241, Assigned namespace "biological_process" to GO:0003242] * Changed name of GO:0003242 from "null" to "cardiac chamber ballooning" * Set definition of GO:0003242 to "The morphogenic growth in which the chambers of the heart expand in size, contributing to their shaping." * Added definition dbxref GOC:mtg_heart to GO:0003242 * Created link GO:0003242 -part_of-> GO:0003206 * Created link GO:0003242 -OBO_REL:is_a-> GO:0003241 * Assigned namespace "biological_process" to GO:0003242 * [Changed name of GO:0003243 from "null" to "circumferential growth involved in left ventricle morphogenesis", Set definition of GO:0003243 to "The morphogenetic growth in which the left ventricle grows expanding its external boundary.", Added definition dbxref GOC:mtg_heart to GO:0003243, Added definition dbxref PMID:14709543 to GO:0003243, Created link GO:0003243 -part_of-> GO:0003214, Created link GO:0003243 -OBO_REL:is_a-> GO:0003241, Assigned namespace "biological_process" to GO:0003243] * Changed name of GO:0003243 from "null" to "circumferential growth involved in left ventricle morphogenesis" * Set definition of GO:0003243 to "The morphogenetic growth in which the left ventricle grows expanding its external boundary." * Added definition dbxref GOC:mtg_heart to GO:0003243 * Added definition dbxref PMID:14709543 to GO:0003243 * Created link GO:0003243 -part_of-> GO:0003214 * Created link GO:0003243 -OBO_REL:is_a-> GO:0003241 * Assigned namespace "biological_process" to GO:0003243 * [Changed name of GO:0003244 from "null" to "radial growth involved in right ventricle morphogenesis", Set definition of GO:0003244 to "The morphogenic growth in which the right ventricle grows along a radial axis.", Added definition dbxref GOC:mtg_heart to GO:0003244, Created link GO:0003244 -OBO_REL:is_a-> GO:0003241, Created link GO:0003244 -part_of-> GO:0003215, Assigned namespace "biological_process" to GO:0003244] * Changed name of GO:0003244 from "null" to "radial growth involved in right ventricle morphogenesis" * Set definition of GO:0003244 to "The morphogenic growth in which the right ventricle grows along a radial axis." * Added definition dbxref GOC:mtg_heart to GO:0003244 * Created link GO:0003244 -OBO_REL:is_a-> GO:0003241 * Created link GO:0003244 -part_of-> GO:0003215 * Assigned namespace "biological_process" to GO:0003244 * [Changed name of GO:0003245 from "null" to "cardiac muscle tissue growth involved in heart morphogenesis", Set definition of GO:0003245 to "The developmental growth of cardiac muscle tissue that contributes to the shaping of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003245, Created link GO:0003245 -OBO_REL:is_a-> GO:0055017, Created link GO:0003245 -part_of-> GO:0055008, Created link GO:0003245 -OBO_REL:is_a-> GO:0003241, Assigned namespace "biological_process" to GO:0003245] * Changed name of GO:0003245 from "null" to "cardiac muscle tissue growth involved in heart morphogenesis" * Set definition of GO:0003245 to "The developmental growth of cardiac muscle tissue that contributes to the shaping of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003245 * Created link GO:0003245 -OBO_REL:is_a-> GO:0055017 * Created link GO:0003245 -part_of-> GO:0055008 * Created link GO:0003245 -OBO_REL:is_a-> GO:0003241 * Assigned namespace "biological_process" to GO:0003245 * [Changed name of GO:0003246 from "null" to "embryonic cardiac muscle cell growth involved in heart morphogenesis", Set definition of GO:0003246 to "The growth of a cardiac muscle cell during the embryonic period, that contributes to the shaping of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003246, Added synonym "embryonic cardiac muscle physiological hypertrophy" to GO:0003246, Added general dbxref GOC:mtg_heart to synonym embryonic cardiac muscle physiological hypertrophy of GO:0003246, Changed synonym scope of GO:0003246 from "Related" to "Exact", Created link GO:0003246 -part_of-> GO:0003245, Created link GO:0003246 -OBO_REL:is_a-> GO:0048588, Assigned namespace "biological_process" to GO:0003246] * Changed name of GO:0003246 from "null" to "embryonic cardiac muscle cell growth involved in heart morphogenesis" * Set definition of GO:0003246 to "The growth of a cardiac muscle cell during the embryonic period, that contributes to the shaping of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003246 * Added synonym "embryonic cardiac muscle physiological hypertrophy" to GO:0003246 * Added general dbxref GOC:mtg_heart to synonym embryonic cardiac muscle physiological hypertrophy of GO:0003246 * Changed synonym scope of GO:0003246 from "Related" to "Exact" * Created link GO:0003246 -part_of-> GO:0003245 * Created link GO:0003246 -OBO_REL:is_a-> GO:0048588 * Assigned namespace "biological_process" to GO:0003246 * [Changed name of GO:0003247 from "null" to "post-embryonic cardiac muscle cell growth involved in heart morphogenesis", Set definition of GO:0003247 to "The growth of a cardiac muscle cell during the postembryonic period that contributes to the shaping of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003247, Created link GO:0003247 -OBO_REL:is_a-> GO:0048588, Created link GO:0003247 -part_of-> GO:0003245, Assigned namespace "biological_process" to GO:0003247] * Changed name of GO:0003247 from "null" to "post-embryonic cardiac muscle cell growth involved in heart morphogenesis" * Set definition of GO:0003247 to "The growth of a cardiac muscle cell during the postembryonic period that contributes to the shaping of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003247 * Created link GO:0003247 -OBO_REL:is_a-> GO:0048588 * Created link GO:0003247 -part_of-> GO:0003245 * Assigned namespace "biological_process" to GO:0003247 * [Changed name of GO:0003248 from "null" to "heart capillary growth", Set definition of GO:0003248 to "The increase in heart capillaries that accompanies physiological hypertrophy of cardiac muscle.", Added definition dbxref GOC:mtg_heart to GO:0003248, Created link GO:0003248 -part_of-> GO:0060976, Created link GO:0003248 -part_of-> GO:0060419, Created link GO:0003248 -OBO_REL:is_a-> GO:0048589, Assigned namespace "biological_process" to GO:0003248] * Changed name of GO:0003248 from "null" to "heart capillary growth" * Set definition of GO:0003248 to "The increase in heart capillaries that accompanies physiological hypertrophy of cardiac muscle." * Added definition dbxref GOC:mtg_heart to GO:0003248 * Created link GO:0003248 -part_of-> GO:0060976 * Created link GO:0003248 -part_of-> GO:0060419 * Created link GO:0003248 -OBO_REL:is_a-> GO:0048589 * Assigned namespace "biological_process" to GO:0003248 * [Changed name of GO:0003249 from "null" to "cell proliferation involved in heart valve morphogenesis", Set definition of GO:0003249 to "The multiplication or reproduction of cells that contributes to the shaping of a heart valve.", Added definition dbxref GOC:mtg_heart to GO:0003249, Created link GO:0003249 -OBO_REL:is_a-> GO:0008283, Created link GO:0003249 -part_of-> GO:0003179, Assigned namespace "biological_process" to GO:0003249] * Changed name of GO:0003249 from "null" to "cell proliferation involved in heart valve morphogenesis" * Set definition of GO:0003249 to "The multiplication or reproduction of cells that contributes to the shaping of a heart valve." * Added definition dbxref GOC:mtg_heart to GO:0003249 * Created link GO:0003249 -OBO_REL:is_a-> GO:0008283 * Created link GO:0003249 -part_of-> GO:0003179 * Assigned namespace "biological_process" to GO:0003249 * [Changed name of GO:0003250 from "null" to "regulation of cell proliferation involved in heart valve morphogenesis", Set definition of GO:0003250 to "Any process that modulates the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve.", Added definition dbxref GOC:mtg_heart to GO:0003250, Created link GO:0003250 -regulates-> GO:0003249, Created link GO:0003250 -OBO_REL:is_a-> GO:0042127, Assigned namespace "biological_process" to GO:0003250] * Changed name of GO:0003250 from "null" to "regulation of cell proliferation involved in heart valve morphogenesis" * Set definition of GO:0003250 to "Any process that modulates the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve." * Added definition dbxref GOC:mtg_heart to GO:0003250 * Created link GO:0003250 -regulates-> GO:0003249 * Created link GO:0003250 -OBO_REL:is_a-> GO:0042127 * Assigned namespace "biological_process" to GO:0003250 * [Changed name of GO:0003251 from "null" to "positive regulation of cell proliferation involved in heart valve morphogenesis", Set definition of GO:0003251 to "Any process that increases the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve.", Added definition dbxref GOC:mtg_heart to GO:0003251, Created link GO:0003251 -OBO_REL:is_a-> GO:0003250, Created link GO:0003251 -positively_regulates-> GO:0003249, Created link GO:0003251 -OBO_REL:is_a-> GO:0008284, Assigned namespace "biological_process" to GO:0003251] * Changed name of GO:0003251 from "null" to "positive regulation of cell proliferation involved in heart valve morphogenesis" * Set definition of GO:0003251 to "Any process that increases the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve." * Added definition dbxref GOC:mtg_heart to GO:0003251 * Created link GO:0003251 -OBO_REL:is_a-> GO:0003250 * Created link GO:0003251 -positively_regulates-> GO:0003249 * Created link GO:0003251 -OBO_REL:is_a-> GO:0008284 * Assigned namespace "biological_process" to GO:0003251 * [Changed name of GO:0003252 from "null" to "negative regulation of cell proliferation involved in heart valve morphogenesis", Set definition of GO:0003252 to "Any process that decreases the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve.", Added definition dbxref GOC:mtg_heart to GO:0003252, Created link GO:0003252 -OBO_REL:is_a-> GO:0003250, Created link GO:0003252 -OBO_REL:is_a-> GO:0008285, Created link GO:0003252 -negatively_regulates-> GO:0003249, Assigned namespace "biological_process" to GO:0003252] * Changed name of GO:0003252 from "null" to "negative regulation of cell proliferation involved in heart valve morphogenesis" * Set definition of GO:0003252 to "Any process that decreases the rate, frequency or extent of cell proliferation that contributes to the shaping of a heart valve." * Added definition dbxref GOC:mtg_heart to GO:0003252 * Created link GO:0003252 -OBO_REL:is_a-> GO:0003250 * Created link GO:0003252 -OBO_REL:is_a-> GO:0008285 * Created link GO:0003252 -negatively_regulates-> GO:0003249 * Assigned namespace "biological_process" to GO:0003252 * [Changed name of GO:0003253 from "null" to "cardiac neural crest cell migration involved in outflow tract morphogenesis", Set definition of GO:0003253 to "The orderly movement of neural crest cells from one site to another that will contribute to the morphogenesis of the outflow tract.", Added definition dbxref GOC:mtg_heart to GO:0003253, Created link GO:0003253 -part_of-> GO:0003151, Created link GO:0003253 -OBO_REL:is_a-> GO:0060973, Created link GO:0003253 -OBO_REL:is_a-> GO:0001755, Assigned namespace "biological_process" to GO:0003253] * Changed name of GO:0003253 from "null" to "cardiac neural crest cell migration involved in outflow tract morphogenesis" * Set definition of GO:0003253 to "The orderly movement of neural crest cells from one site to another that will contribute to the morphogenesis of the outflow tract." * Added definition dbxref GOC:mtg_heart to GO:0003253 * Created link GO:0003253 -part_of-> GO:0003151 * Created link GO:0003253 -OBO_REL:is_a-> GO:0060973 * Created link GO:0003253 -OBO_REL:is_a-> GO:0001755 * Assigned namespace "biological_process" to GO:0003253 * [Changed name of GO:0055127 from "null" to "vibrational conductance of sound to the inner ear", Set definition of GO:0055127 to "The series of events involved in the perception of sound vibration. The vibration is transmitted via ossicles to the inner ear.", Added definition dbxref GOC:mh to GO:0055127, Created link GO:0055127 -OBO_REL:is_a-> GO:0032501, Created link GO:0055127 -part_of-> GO:0007605, Assigned namespace "biological_process" to GO:0055127] * Changed name of GO:0055127 from "null" to "vibrational conductance of sound to the inner ear" * Set definition of GO:0055127 to "The series of events involved in the perception of sound vibration. The vibration is transmitted via ossicles to the inner ear." * Added definition dbxref GOC:mh to GO:0055127 * Created link GO:0055127 -OBO_REL:is_a-> GO:0032501 * Created link GO:0055127 -part_of-> GO:0007605 * Assigned namespace "biological_process" to GO:0055127 * [Changed name of GO:0055128 from "null" to "detection of mechanical stimulus involved in sensory perception of sound", Set definition of GO:0055128 to "The series of events involved in the perception of a sound vibration. The vibration is received by a cell and converted into a molecular signal.", Added definition dbxref GOC:mh to GO:0055128, Created link GO:0055128 -OBO_REL:is_a-> GO:0050877, Assigned namespace "biological_process" to GO:0055128] * Changed name of GO:0055128 from "null" to "detection of mechanical stimulus involved in sensory perception of sound" * Set definition of GO:0055128 to "The series of events involved in the perception of a sound vibration. The vibration is received by a cell and converted into a molecular signal." * Added definition dbxref GOC:mh to GO:0055128 * Created link GO:0055128 -OBO_REL:is_a-> GO:0050877 * Assigned namespace "biological_process" to GO:0055128 * Changed definition of GO:0003170 from "The progression of a heart valve over time, from it's formation to the mature structure. The heart valve is a structure that restricts the flow of blood to different regions of the heart. It forms from the endocardial cushion." to "The progression of a heart valve over time, from its formation to the mature structure. A heart valve is a structure that restricts the flow of blood to different regions of the heart and forms from an endocardial cushion." * Changed definition of GO:0003171 from "The progression of the atrioventricular valve over time, from it's formation to the mature structure." to "The progression of the atrioventricular valve over time, from its formation to the mature structure." * Changed definition of GO:0003172 from "The progression of the sinoatrial valve over time, from it's formation to the mature structure." to "The progression of the sinoatrial valve over time, from its formation to the mature structure." * Changed definition of GO:0003173 from "The progression of the ventriculo bulbo valve over time, from it's formation to the mature structure." to "The progression of the ventriculo bulbo valve over time, from its formation to the mature structure." * Changed definition of GO:0003174 from "The progression of the mitral valve over time, from it's formation to the mature structure." to "The progression of the mitral valve over time, from its formation to the mature structure." * Changed definition of GO:0003175 from "The progression of the tricuspid valve over time, from it's formation to the mature structure." to "The progression of the tricuspid valve over time, from its formation to the mature structure." * Changed definition of GO:0003176 from "The progression of the aortic valve over time, from it's formation to the mature structure." to "The progression of the aortic valve over time, from its formation to the mature structure." * Changed definition of GO:0003177 from "The progression of the pulmonary valve over time, from it's formation to the mature structure." to "The progression of the pulmonary valve over time, from its formation to the mature structure." * Changed definition of GO:0003178 from "The progression of the valve of the coronary sinus over time, from it's formation to the mature structure." to "The progression of the valve of the coronary sinus over time, from its formation to the mature structure." * Changed definition of GO:0003188 from "The developmental process pertaining to the initial formation of a heart valve from unspecified parts." to "The developmental process pertaining to the initial formation of a heart valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Changed definition of GO:0003189 from "The developmental process pertaining to the initial formation of the aortic valve from unspecified parts." to "The developmental process pertaining to the initial formation of the aortic valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable." * Changed name of GO:0003199 from "endocardial cushion cell to mesenchymal cell transition involved in valve formation" to "endocardial cushion to mesenchymal transition involved in valve formation" * Changed definition of GO:0003199 from "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." to "A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will contribute to the formation of a cardiac valve." * Created link GO:0003199 -part_of-> GO:0003188 * Created link GO:0003200 -part_of-> GO:0060411 * Changed definition of GO:0003202 from "A transition where a cardiac epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell." to "A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will give rise to the cardiac skeleton." * Created link GO:0003202 -OBO_REL:is_a-> GO:0048856 * Created link GO:0003202 -part_of-> GO:0003204 * Changed definition of GO:0003203 from "The process by which the anatomical structure of the endocardial cushion is generated and organized. An endothelium is an epithelium that lines an anatomical structure." to "The process by which the anatomical structure of the endocardial cushion is generated and organized. The endocardial cushion is a specialized region of the endocardium that will give rise to the heart septa and valves." * Changed definition of GO:0007605 from "The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound. This is a neurological process." to "The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound." * Added synonym "myocardium morphogenesis" to GO:0055008 * Added general dbxref GOC:mtg_heart to synonym myocardium morphogenesis of GO:0055008 * Changed synonym scope of GO:0055008 from "Related" to "Exact" * Created link GO:0055008 -part_of-> GO:0048738 * Changed name of GO:0055009 from "atrial cardiac muscle morphogenesis" to "atrial cardiac muscle tissue morphogenesis" * Added synonym "atrial myocardium morphogenesis" to GO:0055009 * Added general dbxref GOC:mtg_heart to synonym atrial myocardium morphogenesis of GO:0055009 * Changed synonym scope of GO:0055009 from "Related" to "Exact" * Created link GO:0055009 -part_of-> GO:0003228 * Created link GO:0055009 -part_of-> GO:0003209 * Changed name of GO:0055010 from "ventricular cardiac muscle morphogenesis" to "ventricular cardiac muscle tissue morphogenesis" * Created link GO:0055010 -part_of-> GO:0003208 * Created link GO:0055010 -part_of-> GO:0003229 * Deleted GO:0055017 --OBO_REL:is_a--> GO:0048589 * Created link GO:0055017 -OBO_REL:is_a-> GO:0040007 * Deleted GO:0060038 --part_of--> GO:0007507 * Created link GO:0060038 -part_of-> GO:0055017 * Deleted GO:0060347 --part_of--> GO:0003007 * Created link GO:0060347 -part_of-> GO:0003206 * Deleted GO:0060411 --part_of--> GO:0003007 * Created link GO:0060411 -part_of-> GO:0003206 * Deleted GO:0060419 --OBO_REL:is_a--> GO:0048589 From gocvs at genome.stanford.edu Wed Oct 14 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 14 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/14/2009 Message-ID: <200910150430.n9F4UC6i010645@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.832 by 1.834 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003254 * [Changed name of GO:0003254 from "null" to "regulation of membrane depolarization", Set definition of GO:0003254 to "Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive.", Added definition dbxref GOC:dph to GO:0003254, Added definition dbxref GOC:tb to GO:0003254, Created link GO:0003254 -OBO_REL:is_a-> GO:0051899, Assigned namespace "biological_process" to GO:0003254] * Changed name of GO:0003254 from "null" to "regulation of membrane depolarization" * Set definition of GO:0003254 to "Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive." * Added definition dbxref GOC:dph to GO:0003254 * Added definition dbxref GOC:tb to GO:0003254 * Created link GO:0003254 -OBO_REL:is_a-> GO:0051899 * Assigned namespace "biological_process" to GO:0003254 * Changed name of GO:0000083 from "regulation of transcription of G1/S-phase of mitotic cell cycle" to "regulation of transcription involved in G1/S-phase of mitotic cell cycle" * Changed definition of GO:0000083 from "Any process that regulates transcription such that the target genes are transcribed during the G1/S phase of the mitotic cell cycle." to "Any process that regulates transcription such that the target genes are transcribed as part of the G1/S phase of the mitotic cell cycle." * Changed name of GO:0000114 from "regulation of transcription during G1 phase of mitotic cell cycle" to "regulation of transcription involved in G1 phase of mitotic cell cycle" * Changed definition of GO:0000114 from "Any process that regulates transcription such that the target genes are transcribed during the G1 phase of the mitotic cell cycle." to "Any process that regulates transcription such that the target genes are transcribed as part of the G1 phase of the mitotic cell cycle." * Changed name of GO:0000115 from "regulation of transcription during S-phase of mitotic cell cycle" to "regulation of transcription involved in S-phase of mitotic cell cycle" * Changed definition of GO:0000115 from "A cell cycle process that regulates transcription such that the target genes are transcribed during the S phase of the mitotic cell cycle." to "A cell cycle process that regulates transcription such that the target genes are transcribed as part of the S phase of the mitotic cell cycle." * Changed name of GO:0000116 from "regulation of transcription during G2-phase of mitotic cell cycle" to "regulation of transcription involved in G2-phase of mitotic cell cycle" * Changed definition of GO:0000116 from "Any process that regulates transcription such that the target genes are transcribed during the G2 phase of the mitotic cell cycle." to "Any process that regulates transcription such that the target genes are transcribed as part of the G2 phase of the mitotic cell cycle." * Changed name of GO:0000117 from "regulation of transcription during G2/M-phase of mitotic cell cycle" to "regulation of transcription involved in G2/M-phase of mitotic cell cycle" * Changed definition of GO:0000117 from "Any process that regulates transcription such that the target genes are transcribed during the G2/M phase of the mitotic cell cycle." to "Any process that regulates transcription such that the target genes are transcribed as part of the G2/M phase of the mitotic cell cycle." * Created link GO:0005006 -part_of-> GO:0007173 * Created link GO:0005007 -part_of-> GO:0008543 * Created link GO:0005008 -part_of-> GO:0048012 * Created link GO:0005009 -part_of-> GO:0008286 * Created link GO:0005010 -part_of-> GO:0048009 * Created link GO:0005017 -part_of-> GO:0048008 * Created link GO:0005021 -part_of-> GO:0048010 * Deleted GO:0010756 --OBO_REL:is_a--> GO:0031401 * Deleted GO:0010757 --OBO_REL:is_a--> GO:0031400 * Deleted GO:0010954 --OBO_REL:is_a--> GO:0031401 * Deleted GO:0010955 --OBO_REL:is_a--> GO:0031400 * Deleted GO:0030449 --OBO_REL:is_a--> GO:0030162 * added secondary id GO:0055128 to GO:0050910 * Changed definition of GO:0050910 from "The series of events involved in the perception of sound in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. Sound is picked up in the form of vibrations." to "The series of events involved in the perception of sound vibration. The vibration is received by a cell and converted into a molecular signal." * Created link GO:0050910 -OBO_REL:is_a-> GO:0050877 * Created link GO:0052004 -negatively_regulates-> GO:0009862 * Created link GO:0052074 -positively_regulates-> GO:0009862 * Created link GO:0052089 -regulates-> GO:0009862 * Created link GO:0052287 -OBO_REL:is_a-> GO:0050850 * Created link GO:0052307 -regulates-> GO:0019722 * Changed name of GO:0055021 from "regulation of cardiac muscle growth" to "regulation of cardiac muscle tissue growth" * Changed name of GO:0055022 from "negative regulation of cardiac muscle growth" to "negative regulation of cardiac muscle tissue growth" * Changed name of GO:0055023 from "positive regulation of cardiac muscle growth" to "positive regulation of cardiac muscle tissue growth" * Destroyed object GO:0055128 * Changed name of GO:0060277 from "negative regulation of transcription during G1 phase of mitotic cell cycle" to "negative regulation of transcription involved in G1 phase of mitotic cell cycle" * Changed definition of GO:0060277 from "Any process that stop, prevents or decreases transcription during the G1 phase of the mitotic cell cycle." to "Any process that stop, prevents or decreases transcription as part of the G1 phase of the mitotic cell cycle." * Changed name of GO:0060304 from "regulation of phosphoinosotide dephosphorylation" to "regulation of phosphoinositide dephosphorylation" * Deleted GO:0060371 --regulates--> GO:0051899 * Created link GO:0060371 -OBO_REL:is_a-> GO:0003254 * Deleted GO:0060373 --regulates--> GO:0051899 * Created link GO:0060373 -OBO_REL:is_a-> GO:0003254 * Deleted GO:0070613 --OBO_REL:is_a--> GO:0031399 From gocvs at genome.stanford.edu Thu Oct 15 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 15 Oct 2009 21:30:13 -0700 Subject: [Go-diff] GO update 10/15/2009 Message-ID: <200910160430.n9G4UDUU005568@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.834 by 1.838 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003255 * Created object of type obo:TERM with id GO:0003256 * Created object of type obo:TERM with id GO:0003257 * Created object of type obo:TERM with id GO:0003258 * Created object of type obo:TERM with id GO:0003259 * Created object of type obo:TERM with id GO:0003260 * Created object of type obo:TERM with id GO:0003261 * Created object of type obo:TERM with id GO:0003262 * Created object of type obo:TERM with id GO:0003263 * Created object of type obo:TERM with id GO:0003264 * Created object of type obo:TERM with id GO:0003265 * Created object of type obo:TERM with id GO:0003266 * Created object of type obo:TERM with id GO:0003267 * Created object of type obo:TERM with id GO:0003268 * Created object of type obo:TERM with id GO:0003269 * Created object of type obo:TERM with id GO:0003270 * Created object of type obo:TERM with id GO:0003271 * Created object of type obo:TERM with id GO:0044184 * Created object of type obo:TERM with id GO:0044185 * Created object of type obo:TERM with id GO:0044186 * Created object of type obo:TERM with id GO:0044187 * Created object of type obo:TERM with id GO:0044188 * Created object of type obo:TERM with id GO:0044189 * Created object of type obo:TERM with id GO:0044190 * Created object of type obo:TERM with id GO:0044191 * Created object of type obo:TERM with id GO:0044192 * Created object of type obo:TERM with id GO:0044193 * [Changed name of GO:0003255 from "null" to "endocardial precursor cell differentiation", Set definition of GO:0003255 to "The process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of an endocardial precursor cell. A endocardial precursor cell is a cell that has been committed to a endocardial cell fate, but will undergo further cell divisions rather than terminally differentiate.", Added definition dbxref GOC:mtg_heart to GO:0003255, Created link GO:0003255 -OBO_REL:is_a-> GO:0010002, Assigned namespace "biological_process" to GO:0003255] * Changed name of GO:0003255 from "null" to "endocardial precursor cell differentiation" * Set definition of GO:0003255 to "The process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of an endocardial precursor cell. A endocardial precursor cell is a cell that has been committed to a endocardial cell fate, but will undergo further cell divisions rather than terminally differentiate." * Added definition dbxref GOC:mtg_heart to GO:0003255 * Created link GO:0003255 -OBO_REL:is_a-> GO:0010002 * Assigned namespace "biological_process" to GO:0003255 * [Changed name of GO:0003256 from "null" to "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation", Set definition of GO:0003256 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of a myocardial precursor cell.", Added definition dbxref GOC:mtg_heart to GO:0003256, Created link GO:0003256 -OBO_REL:is_a-> GO:0006357, Created link GO:0003256 -part_of-> GO:0060379, Assigned namespace "biological_process" to GO:0003256] * Changed name of GO:0003256 from "null" to "regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" * Set definition of GO:0003256 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of a myocardial precursor cell." * Added definition dbxref GOC:mtg_heart to GO:0003256 * Created link GO:0003256 -OBO_REL:is_a-> GO:0006357 * Created link GO:0003256 -part_of-> GO:0060379 * Assigned namespace "biological_process" to GO:0003256 * [Changed name of GO:0003257 from "null" to "positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation", Set definition of GO:0003257 to "Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of a myocardial precursor cell.", Added definition dbxref GOC:mtg_heart to GO:0003257, Created link GO:0003257 -OBO_REL:is_a-> GO:0003256, Created link GO:0003257 -OBO_REL:is_a-> GO:0045944, Assigned namespace "biological_process" to GO:0003257] * Changed name of GO:0003257 from "null" to "positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation" * Set definition of GO:0003257 to "Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of a myocardial precursor cell." * Added definition dbxref GOC:mtg_heart to GO:0003257 * Created link GO:0003257 -OBO_REL:is_a-> GO:0003256 * Created link GO:0003257 -OBO_REL:is_a-> GO:0045944 * Assigned namespace "biological_process" to GO:0003257 * [Changed name of GO:0003258 from "null" to "regulation of transcription from RNA polymerase II promoter involved in endocardial precursor cell differentiation", Set definition of GO:0003258 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of an endocardial precursor cell.", Added definition dbxref GOC:mtg_heart to GO:0003258, Created link GO:0003258 -OBO_REL:is_a-> GO:0006357, Created link GO:0003258 -part_of-> GO:0003255, Assigned namespace "biological_process" to GO:0003258] * Changed name of GO:0003258 from "null" to "regulation of transcription from RNA polymerase II promoter involved in endocardial precursor cell differentiation" * Set definition of GO:0003258 to "Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the differentiation of an endocardial precursor cell." * Added definition dbxref GOC:mtg_heart to GO:0003258 * Created link GO:0003258 -OBO_REL:is_a-> GO:0006357 * Created link GO:0003258 -part_of-> GO:0003255 * Assigned namespace "biological_process" to GO:0003258 * [Changed name of GO:0003259 from "null" to "cardioblast anterior-lateral migration", Set definition of GO:0003259 to "The orderly movement of cardiac progenitor cells toward the head and laterally to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003259, Created link GO:0003259 -OBO_REL:is_a-> GO:0003260, Assigned namespace "biological_process" to GO:0003259] * Changed name of GO:0003259 from "null" to "cardioblast anterior-lateral migration" * Set definition of GO:0003259 to "The orderly movement of cardiac progenitor cells toward the head and laterally to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003259 * Created link GO:0003259 -OBO_REL:is_a-> GO:0003260 * Assigned namespace "biological_process" to GO:0003259 * [Changed name of GO:0003260 from "null" to "cardioblast migration", Set definition of GO:0003260 to "The orderly movement of cardiac progenitor cells to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003260, Created link GO:0003260 -part_of-> GO:0060914, Created link GO:0003260 -OBO_REL:is_a-> GO:0060974, Assigned namespace "biological_process" to GO:0003260] * Changed name of GO:0003260 from "null" to "cardioblast migration" * Set definition of GO:0003260 to "The orderly movement of cardiac progenitor cells to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003260 * Created link GO:0003260 -part_of-> GO:0060914 * Created link GO:0003260 -OBO_REL:is_a-> GO:0060974 * Assigned namespace "biological_process" to GO:0003260 * [Changed name of GO:0003261 from "null" to "cardiac muscle progenitor cell migration to the midline", Set definition of GO:0003261 to "The orderly movement of myocardial progenitor cells toward the midline to form the heart field. Cardiac muscle progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into myocardial cells of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003261, Added synonym "myocardial progenitor cell midline convergence" to GO:0003261, Added general dbxref GOC:mtg_heart to synonym myocardial progenitor cell midline convergence of GO:0003261, Changed synonym scope of GO:0003261 from "Related" to "Exact", Created link GO:0003261 -OBO_REL:is_a-> GO:0060975, Assigned namespace "biological_process" to GO:0003261] * Changed name of GO:0003261 from "null" to "cardiac muscle progenitor cell migration to the midline" * Set definition of GO:0003261 to "The orderly movement of myocardial progenitor cells toward the midline to form the heart field. Cardiac muscle progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into myocardial cells of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003261 * Added synonym "myocardial progenitor cell midline convergence" to GO:0003261 * Added general dbxref GOC:mtg_heart to synonym myocardial progenitor cell midline convergence of GO:0003261 * Changed synonym scope of GO:0003261 from "Related" to "Exact" * Created link GO:0003261 -OBO_REL:is_a-> GO:0060975 * Assigned namespace "biological_process" to GO:0003261 * [Changed name of GO:0003262 from "null" to "endocardial progenitor cell migration to the midline", Set definition of GO:0003262 to "The orderly movement of endocardial progenitor cells toward the midline to form the heart field. Cardiac muscle progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into endocardial cells of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003262, Created link GO:0003262 -OBO_REL:is_a-> GO:0060975, Assigned namespace "biological_process" to GO:0003262] * Changed name of GO:0003262 from "null" to "endocardial progenitor cell migration to the midline" * Set definition of GO:0003262 to "The orderly movement of endocardial progenitor cells toward the midline to form the heart field. Cardiac muscle progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into endocardial cells of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003262 * Created link GO:0003262 -OBO_REL:is_a-> GO:0060975 * Assigned namespace "biological_process" to GO:0003262 * [Changed name of GO:0003263 from "null" to "cardioblast proliferation", Set definition of GO:0003263 to "The multiplication or reproduction of cardioblasts, resulting in the expansion of the population in the heart field.", Added definition dbxref GOC:mtg_heart to GO:0003263, Created link GO:0003263 -OBO_REL:is_a-> GO:0060914, Created link GO:0003263 -OBO_REL:is_a-> GO:0008283, Assigned namespace "biological_process" to GO:0003263] * Changed name of GO:0003263 from "null" to "cardioblast proliferation" * Set definition of GO:0003263 to "The multiplication or reproduction of cardioblasts, resulting in the expansion of the population in the heart field." * Added definition dbxref GOC:mtg_heart to GO:0003263 * Created link GO:0003263 -OBO_REL:is_a-> GO:0060914 * Created link GO:0003263 -OBO_REL:is_a-> GO:0008283 * Assigned namespace "biological_process" to GO:0003263 * [Changed name of GO:0003264 from "null" to "regulation of cardioblast proliferation", Set definition of GO:0003264 to "Any process that modulates the frequency, rate or extent of cardioblast proliferation.", Added definition dbxref GOC:mtg_heart to GO:0003264, Created link GO:0003264 -OBO_REL:is_a-> GO:0042127, Created link GO:0003264 -regulates-> GO:0003263, Assigned namespace "biological_process" to GO:0003264] * Changed name of GO:0003264 from "null" to "regulation of cardioblast proliferation" * Set definition of GO:0003264 to "Any process that modulates the frequency, rate or extent of cardioblast proliferation." * Added definition dbxref GOC:mtg_heart to GO:0003264 * Created link GO:0003264 -OBO_REL:is_a-> GO:0042127 * Created link GO:0003264 -regulates-> GO:0003263 * Assigned namespace "biological_process" to GO:0003264 * [Changed name of GO:0003265 from "null" to "regulation of first heart field cardioblast proliferation", Set definition of GO:0003265 to "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the first heart field.", Added definition dbxref GOC:mtg_heart to GO:0003265, Created link GO:0003265 -OBO_REL:is_a-> GO:0003264, Assigned namespace "biological_process" to GO:0003265] * Changed name of GO:0003265 from "null" to "regulation of first heart field cardioblast proliferation" * Set definition of GO:0003265 to "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the first heart field." * Added definition dbxref GOC:mtg_heart to GO:0003265 * Created link GO:0003265 -OBO_REL:is_a-> GO:0003264 * Assigned namespace "biological_process" to GO:0003265 * [Changed name of GO:0003266 from "null" to "regulation of second heart field cardioblast proliferation", Set definition of GO:0003266 to "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the second heart field.", Added definition dbxref GOC:mtg_heart to GO:0003266, Created link GO:0003266 -OBO_REL:is_a-> GO:0003264, Assigned namespace "biological_process" to GO:0003266] * Changed name of GO:0003266 from "null" to "regulation of second heart field cardioblast proliferation" * Set definition of GO:0003266 to "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the second heart field." * Added definition dbxref GOC:mtg_heart to GO:0003266 * Created link GO:0003266 -OBO_REL:is_a-> GO:0003264 * Assigned namespace "biological_process" to GO:0003266 * [Changed name of GO:0003267 from "null" to "regulation of second heart field cardioblast proliferation by Wnt receptor signaling pathway", Set definition of GO:0003267 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of a target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation.", Added definition dbxref GOC:mtg_heart to GO:0003267, Created link GO:0003267 -OBO_REL:is_a-> GO:0003266, Created link GO:0003267 -OBO_REL:is_a-> GO:0016055, Assigned namespace "biological_process" to GO:0003267] * Changed name of GO:0003267 from "null" to "regulation of second heart field cardioblast proliferation by Wnt receptor signaling pathway" * Set definition of GO:0003267 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of a target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." * Added definition dbxref GOC:mtg_heart to GO:0003267 * Created link GO:0003267 -OBO_REL:is_a-> GO:0003266 * Created link GO:0003267 -OBO_REL:is_a-> GO:0016055 * Assigned namespace "biological_process" to GO:0003267 * [Changed name of GO:0003268 from "null" to "regulation of second heart field cardioblast cell proliferation by fibroblast growth factor receptor signaling pathway", Set definition of GO:0003268 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in the modulation of the frequency, rate or extent of cardioblast proliferation.", Added definition dbxref GOC:mtg_heart to GO:0003268, Created link GO:0003268 -OBO_REL:is_a-> GO:0003266, Created link GO:0003268 -OBO_REL:is_a-> GO:0008543, Assigned namespace "biological_process" to GO:0003268] * Changed name of GO:0003268 from "null" to "regulation of second heart field cardioblast cell proliferation by fibroblast growth factor receptor signaling pathway" * Set definition of GO:0003268 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." * Added definition dbxref GOC:mtg_heart to GO:0003268 * Created link GO:0003268 -OBO_REL:is_a-> GO:0003266 * Created link GO:0003268 -OBO_REL:is_a-> GO:0008543 * Assigned namespace "biological_process" to GO:0003268 * [Changed name of GO:0003269 from "null" to "regulation of second heart field cardioblast proliferation by BMP signaling pathway", Set definition of GO:0003269 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor resulting in the modulation of the frequency, rate or extent of cardioblast proliferation.", Added definition dbxref GOC:mtg_heart to GO:0003269, Created link GO:0003269 -OBO_REL:is_a-> GO:0030509, Created link GO:0003269 -OBO_REL:is_a-> GO:0003266, Assigned namespace "biological_process" to GO:0003269] * Changed name of GO:0003269 from "null" to "regulation of second heart field cardioblast proliferation by BMP signaling pathway" * Set definition of GO:0003269 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." * Added definition dbxref GOC:mtg_heart to GO:0003269 * Created link GO:0003269 -OBO_REL:is_a-> GO:0030509 * Created link GO:0003269 -OBO_REL:is_a-> GO:0003266 * Assigned namespace "biological_process" to GO:0003269 * [Changed name of GO:0003270 from "null" to "regulation of second heart field cardioblast proliferation by Notch signaling pathway", Set definition of GO:0003270 to "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation.", Added definition dbxref GOC:mtg_heart to GO:0003270, Created link GO:0003270 -OBO_REL:is_a-> GO:0007219, Created link GO:0003270 -OBO_REL:is_a-> GO:0003266, Assigned namespace "biological_process" to GO:0003270] * Changed name of GO:0003270 from "null" to "regulation of second heart field cardioblast proliferation by Notch signaling pathway" * Set definition of GO:0003270 to "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." * Added definition dbxref GOC:mtg_heart to GO:0003270 * Created link GO:0003270 -OBO_REL:is_a-> GO:0007219 * Created link GO:0003270 -OBO_REL:is_a-> GO:0003266 * Assigned namespace "biological_process" to GO:0003270 * [Changed name of GO:0003271 from "null" to "regulation of second heart field cardioblast proliferation by smoothened receptor signaling pathway", Set definition of GO:0003271 to "The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened resulting in the modulation of the frequency, rate or extent of cardioblast proliferation.", Added definition dbxref GOC:mtg_heart to GO:0003271, Created link GO:0003271 -OBO_REL:is_a-> GO:0007224, Created link GO:0003271 -OBO_REL:is_a-> GO:0003266, Assigned namespace "biological_process" to GO:0003271] * Changed name of GO:0003271 from "null" to "regulation of second heart field cardioblast proliferation by smoothened receptor signaling pathway" * Set definition of GO:0003271 to "The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." * Added definition dbxref GOC:mtg_heart to GO:0003271 * Created link GO:0003271 -OBO_REL:is_a-> GO:0007224 * Created link GO:0003271 -OBO_REL:is_a-> GO:0003266 * Assigned namespace "biological_process" to GO:0003271 * [Changed name of GO:0044184 from "null" to "host cell late endosome", Set definition of GO:0044184 to "A prelysosomal endocytic organelle differentiated from host early endosomes by lower lumenal pH and different protein composition. Host late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.", Added definition dbxref GOC:jl to GO:0044184, Added GO:0044184 to category gosubset_prok, Created link GO:0044184 -OBO_REL:is_a-> GO:0044174, Assigned namespace "cellular_component" to GO:0044184] * Changed name of GO:0044184 from "null" to "host cell late endosome" * Set definition of GO:0044184 to "A prelysosomal endocytic organelle differentiated from host early endosomes by lower lumenal pH and different protein composition. Host late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center." * Added definition dbxref GOC:jl to GO:0044184 * Added GO:0044184 to category gosubset_prok * Created link GO:0044184 -OBO_REL:is_a-> GO:0044174 * Assigned namespace "cellular_component" to GO:0044184 * [Changed name of GO:0044185 from "null" to "host cell late endosome membrane", Set definition of GO:0044185 to "The lipid bilayer surrounding a host cell late endosome.", Added definition dbxref GOC:jl to GO:0044185, Added GO:0044185 to category gosubset_prok, Created link GO:0044185 -OBO_REL:is_a-> GO:0044184, Created link GO:0044185 -OBO_REL:is_a-> GO:0044175, Created link GO:0044185 -part_of-> GO:0044184, Assigned namespace "cellular_component" to GO:0044185] * Changed name of GO:0044185 from "null" to "host cell late endosome membrane" * Set definition of GO:0044185 to "The lipid bilayer surrounding a host cell late endosome." * Added definition dbxref GOC:jl to GO:0044185 * Added GO:0044185 to category gosubset_prok * Created link GO:0044185 -OBO_REL:is_a-> GO:0044184 * Created link GO:0044185 -OBO_REL:is_a-> GO:0044175 * Created link GO:0044185 -part_of-> GO:0044184 * Assigned namespace "cellular_component" to GO:0044185 * [Changed name of GO:0044186 from "null" to "host cell lipid particle", Set definition of GO:0044186 to "Any particle of coalesced lipids in the cytoplasm of a host cell. May include associated proteins.", Added definition dbxref GOC:jl to GO:0044186, Added GO:0044186 to category gosubset_prok, Created link GO:0044186 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044186] * Changed name of GO:0044186 from "null" to "host cell lipid particle" * Set definition of GO:0044186 to "Any particle of coalesced lipids in the cytoplasm of a host cell. May include associated proteins." * Added definition dbxref GOC:jl to GO:0044186 * Added GO:0044186 to category gosubset_prok * Created link GO:0044186 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044186 * [Changed name of GO:0044187 from "null" to "host cell lysosome", Set definition of GO:0044187 to "A small lytic vacuole that has cell cycle-independent morphology and is found in most host animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and host cell lysosomes have a great variety of morphologies and functions.", Added definition dbxref GOC:jl to GO:0044187, Added GO:0044187 to category gosubset_prok, Created link GO:0044187 -OBO_REL:is_a-> GO:0033648, Created link GO:0044187 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044187] * Changed name of GO:0044187 from "null" to "host cell lysosome" * Set definition of GO:0044187 to "A small lytic vacuole that has cell cycle-independent morphology and is found in most host animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and host cell lysosomes have a great variety of morphologies and functions." * Added definition dbxref GOC:jl to GO:0044187 * Added GO:0044187 to category gosubset_prok * Created link GO:0044187 -OBO_REL:is_a-> GO:0033648 * Created link GO:0044187 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044187 * [Changed name of GO:0044188 from "null" to "host cell lysosomal membrane", Set definition of GO:0044188 to "The lipid bilayer surrounding the host cell lysosome and separating its contents from the host cell cytoplasm.", Added definition dbxref GOC:jl to GO:0044188, Added GO:0044188 to category gosubset_prok, Created link GO:0044188 -OBO_REL:is_a-> GO:0033644, Created link GO:0044188 -part_of-> GO:0044187, Assigned namespace "cellular_component" to GO:0044188] * Changed name of GO:0044188 from "null" to "host cell lysosomal membrane" * Set definition of GO:0044188 to "The lipid bilayer surrounding the host cell lysosome and separating its contents from the host cell cytoplasm." * Added definition dbxref GOC:jl to GO:0044188 * Added GO:0044188 to category gosubset_prok * Created link GO:0044188 -OBO_REL:is_a-> GO:0033644 * Created link GO:0044188 -part_of-> GO:0044187 * Assigned namespace "cellular_component" to GO:0044188 * [Changed name of GO:0044189 from "null" to "host cell microsome", Set definition of GO:0044189 to "Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic host cells are homogenized and that sediment on centrifugation at 100000 g.", Added definition dbxref GOC:jl to GO:0044189, Added GO:0044189 to category gosubset_prok, Added synonym "host cell microsomal membrane " to GO:0044189, Changed synonym scope of GO:0044189 from "Related" to "Exact", Created link GO:0044189 -OBO_REL:is_a-> GO:0033643, Assigned namespace "cellular_component" to GO:0044189] * Changed name of GO:0044189 from "null" to "host cell microsome" * Set definition of GO:0044189 to "Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic host cells are homogenized and that sediment on centrifugation at 100000 g." * Added definition dbxref GOC:jl to GO:0044189 * Added GO:0044189 to category gosubset_prok * Added synonym "host cell microsomal membrane " to GO:0044189 * Changed synonym scope of GO:0044189 from "Related" to "Exact" * Created link GO:0044189 -OBO_REL:is_a-> GO:0033643 * Assigned namespace "cellular_component" to GO:0044189 * [Changed name of GO:0044190 from "null" to "host cell mitochondrial envelope", Set definition of GO:0044190 to "The double lipid bilayer enclosing the host cell mitochondrion and separating its contents from the host cell cytoplasm; includes the intermembrane space.", Added definition dbxref GOC:jl to GO:0044190, Added GO:0044190 to category gosubset_prok, Created link GO:0044190 -OBO_REL:is_a-> GO:0033655, Created link GO:0044190 -part_of-> GO:0033650, Assigned namespace "cellular_component" to GO:0044190] * Changed name of GO:0044190 from "null" to "host cell mitochondrial envelope" * Set definition of GO:0044190 to "The double lipid bilayer enclosing the host cell mitochondrion and separating its contents from the host cell cytoplasm; includes the intermembrane space." * Added definition dbxref GOC:jl to GO:0044190 * Added GO:0044190 to category gosubset_prok * Created link GO:0044190 -OBO_REL:is_a-> GO:0033655 * Created link GO:0044190 -part_of-> GO:0033650 * Assigned namespace "cellular_component" to GO:0044190 * [Changed name of GO:0044191 from "null" to "host cell mitochondrial membrane", Set definition of GO:0044191 to "Either of the lipid bilayers that surround the host cell mitochondrion and form the host cell mitochondrial envelope.", Added definition dbxref GOC:jl to GO:0044191, Added GO:0044191 to category gosubset_prok, Created link GO:0044191 -OBO_REL:is_a-> GO:0033644, Created link GO:0044191 -part_of-> GO:0044190, Assigned namespace "cellular_component" to GO:0044191] * Changed name of GO:0044191 from "null" to "host cell mitochondrial membrane" * Set definition of GO:0044191 to "Either of the lipid bilayers that surround the host cell mitochondrion and form the host cell mitochondrial envelope." * Added definition dbxref GOC:jl to GO:0044191 * Added GO:0044191 to category gosubset_prok * Created link GO:0044191 -OBO_REL:is_a-> GO:0033644 * Created link GO:0044191 -part_of-> GO:0044190 * Assigned namespace "cellular_component" to GO:0044191 * [Changed name of GO:0044192 from "null" to "host cell mitochondrial inner membrane", Set definition of GO:0044192 to "The inner, i.e. lumen-facing, lipid bilayer of the host cell mitochondrial envelope. It is highly folded to form cristae.", Added definition dbxref GOC:jl to GO:0044192, Added GO:0044192 to category gosubset_prok, Created link GO:0044192 -OBO_REL:is_a-> GO:0044191, Assigned namespace "cellular_component" to GO:0044192] * Changed name of GO:0044192 from "null" to "host cell mitochondrial inner membrane" * Set definition of GO:0044192 to "The inner, i.e. lumen-facing, lipid bilayer of the host cell mitochondrial envelope. It is highly folded to form cristae." * Added definition dbxref GOC:jl to GO:0044192 * Added GO:0044192 to category gosubset_prok * Created link GO:0044192 -OBO_REL:is_a-> GO:0044191 * Assigned namespace "cellular_component" to GO:0044192 * [Changed name of GO:0044193 from "null" to "host cell mitochondrial outer membrane", Set definition of GO:0044193 to "The outer, i.e. cytoplasm-facing, lipid bilayer of the host cell mitochondrial envelope.", Added definition dbxref GOC:jl to GO:0044193, Added GO:0044193 to category gosubset_prok, Created link GO:0044193 -OBO_REL:is_a-> GO:0044191, Assigned namespace "cellular_component" to GO:0044193] * Changed name of GO:0044193 from "null" to "host cell mitochondrial outer membrane" * Set definition of GO:0044193 to "The outer, i.e. cytoplasm-facing, lipid bilayer of the host cell mitochondrial envelope." * Added definition dbxref GOC:jl to GO:0044193 * Added GO:0044193 to category gosubset_prok * Created link GO:0044193 -OBO_REL:is_a-> GO:0044191 * Assigned namespace "cellular_component" to GO:0044193 * Deleted general dbxref XX: from GO:0000974 * Deleted synonym "" from GO:0002148 * Changed definition of GO:0003204 from "The progression of the cardiac skeleton over time, from its formation to the mature structure. The cardiac skeleton is a specialized extracellular matrix that provides physical support for the heart." to "The progression of the cardiac skeleton over time, from its formation to the mature structure. The cardiac skeleton is a specialized extracellular matrix that separates the atria from the ventricles and provides physical support for the heart." * Added synonym "heart fibrous skeleton development" to GO:0003204 * Added general dbxref GOC:mtg_heart to synonym heart fibrous skeleton development of GO:0003204 * Changed synonym scope of GO:0003204 from "Related" to "Exact" * Created link GO:0003208 -part_of-> GO:0003231 * Deleted GO:0003210 --part_of--> GO:0003213 * Changed definition of GO:0003212 from "The process by which the cardiac left atrium is generated and organized." to "The process by which the left cardiac atrium is generated and organized." * Changed definition of GO:0003213 from "The process by which the cardiac right atrium is generated and organized." to "The process by which the right cardiac atrium is generated and organized." * Changed definition of GO:0003214 from "The process by which the cardiac left ventricle is generated and organized." to "The process by which the left cardiac ventricle is generated and organized." * Changed definition of GO:0003215 from "The process by which the cardiac right ventricle is generated and organized." to "The process by which the right cardiac ventricle is generated and organized." * Changed definition of GO:0003216 from "The developmental process pertaining to the initial formation of a cardiac left atrium from unspecified parts." to "The developmental process pertaining to the initial formation of a left cardiac atrium from unspecified parts." * Created link GO:0003217 -part_of-> GO:0003213 * Changed definition of GO:0003218 from "The developmental process pertaining to the initial formation of a cardiac left ventricle from unspecified parts." to "The developmental process pertaining to the initial formation of a left cardiac ventricle from unspecified parts." * Changed definition of GO:0003219 from "The developmental process pertaining to the initial formation of a cardiac right ventricle from unspecified parts." to "The developmental process pertaining to the initial formation of a right cardiac ventricle from unspecified parts." * Changed definition of GO:0003220 from "The process by which the anatomical structures of left cardiac ventricle muscle is generated and organized." to "The process by which the anatomical structures of left cardiac ventricle muscle are generated and organized." * Changed definition of GO:0003221 from "The process by which the anatomical structures of the right cardiac ventricle muscle is generated and organized." to "The process by which the anatomical structures of the right cardiac ventricle muscle are generated and organized." * Changed definition of GO:0003222 from "The process by which the anatomical structures of the trabecular cardiac ventricle muscle is generated and organized." to "The process by which the anatomical structures of the trabecular cardiac ventricle muscle are generated and organized." * Changed definition of GO:0003223 from "The process by which the anatomical structures of the compact cardiac ventricle muscle is generated and organized." to "The process by which the anatomical structures of the compact cardiac ventricle muscle are generated and organized." * Changed definition of GO:0003224 from "The process by which the anatomical structures of cardiac left ventricular compact myocardium is generated and organized." to "The process by which the anatomical structures of cardiac left ventricular compact myocardium are generated and organized." * Changed definition of GO:0003225 from "The process by which the anatomical structures of cardiac left ventricular trabecular myocardium is generated and organized." to "The process by which the anatomical structures of cardiac left ventricular trabecular myocardium are generated and organized." * Changed definition of GO:0003226 from "The process by which the anatomical structures of the right ventricular compact myocardium is generated and organized." to "The process by which the anatomical structures of the right ventricular compact myocardium are generated and organized." * Changed definition of GO:0003227 from "The process by which the anatomical structures of the right ventricular myocardium is generated and organized." to "The process by which the anatomical structures of the right ventricular myocardium are generated and organized." * Changed definition of GO:0003230 from "The process whose specific outcome is the progression of a cardiac ventricle over time, from its formation to the mature structure." to "The process whose specific outcome is the progression of a cardiac atrium over time, from its formation to the mature structure." * Deleted GO:0003230 --part_of--> GO:0003231 * Changed definition of GO:0003232 from "The process whose specific outcome is the progression of the bulbous arteriosus over time, from its formation to the mature structure. The bulbous arteriosus is an elastic heart chamber." to "The process whose specific outcome is the progression of the bulbus arteriosus over time, from its formation to the mature structure. The bulbus arteriosus is an elastic heart chamber." * Changed definition of GO:0003254 from "Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive." to "Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive." * Changed definition of GO:0007276 from "The generation and maintenance of gametes. A gamete is a haploid reproductive cell." to "The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell." * Deleted GO:0007276 --OBO_REL:is_a--> GO:0022414 * Created link GO:0007276 -OBO_REL:is_a-> GO:0048609 * Deleted GO:0009566 --OBO_REL:is_a--> GO:0022414 * Created link GO:0009566 -OBO_REL:is_a-> GO:0048609 * Changed definition of GO:0010002 from "The process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast." to "The process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Added synonym "cardiac precursor cell differentiation" to GO:0010002 * Added general dbxref GOC:mtg_heart to synonym cardiac precursor cell differentiation of GO:0010002 * Changed synonym scope of GO:0010002 from "Related" to "Exact" * Deleted GO:0030430 --part_of--> GO:0043656 * Deleted GO:0033646 --OBO_REL:is_a--> GO:0043656 * Created link GO:0033646 -part_of-> GO:0043656 * Created link GO:0033646 -OBO_REL:is_a-> GO:0033643 * Deleted GO:0042025 --part_of--> GO:0043656 * Changed definition of GO:0055007 from "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction." to "The process whereby a cardiac muscle precursor cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction." * Changed definition of GO:0060379 from "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac myoblast. A cardiac myoblast is a stem cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into cardiac muscle cells." to "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac myoblast. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life." * Added synonym "myocardial precursor cell differentiation" to GO:0060379 * Added general dbxref GOC:mtg_heart to synonym myocardial precursor cell differentiation of GO:0060379 * Changed synonym scope of GO:0060379 from "Related" to "Exact" * Deleted GO:0060379 --OBO_REL:is_a--> GO:0035051 * Created link GO:0060379 -OBO_REL:is_a-> GO:0010002 * Changed name of GO:0060975 from "cardiac progenitor cell migration" to "cardioblast migration to the midline" * Added synonym "cardiac progenitor cell midline migration" to GO:0060975 * Added general dbxref GOC:mtg_heart to synonym cardiac progenitor cell midline migration of GO:0060975 * Changed synonym scope of GO:0060975 from "Related" to "Exact" * Added synonym "cardioblast midline convergence" to GO:0060975 * Added general dbxref GOC:mtg_heart to synonym cardioblast midline convergence of GO:0060975 * Changed synonym scope of GO:0060975 from "Related" to "Exact" * Deleted GO:0060975 --OBO_REL:is_a--> GO:0060974 * Created link GO:0060975 -OBO_REL:is_a-> GO:0060029 * Created link GO:0060975 -OBO_REL:is_a-> GO:0003260 From gocvs at genome.stanford.edu Fri Oct 16 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 16 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/16/2009 Message-ID: <200910170430.n9H4UCOS029104@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.838 by 1.839 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created link GO:0003250 -OBO_REL:is_a-> GO:0051239 * Created link GO:0003250 -OBO_REL:is_a-> GO:0022603 * Created link GO:0003254 -OBO_REL:is_a-> GO:0050794 * Created link GO:0003254 -OBO_REL:is_a-> GO:0032844 * Created link GO:0003264 -OBO_REL:is_a-> GO:0003156 * Deleted GO:0009566 --OBO_REL:is_a--> GO:0048609 * Created link GO:0009566 -OBO_REL:is_a-> GO:0022414 * Deleted GO:0010755 --OBO_REL:is_a--> GO:0070613 * Created link GO:0010755 -OBO_REL:is_a-> GO:0010953 * Created link GO:0010756 -OBO_REL:is_a-> GO:0010954 * Created link GO:0010757 -OBO_REL:is_a-> GO:0010955 * Created link GO:0010954 -OBO_REL:is_a-> GO:0051247 * Created link GO:0010955 -OBO_REL:is_a-> GO:0051248 * Deleted GO:0016486 --OBO_REL:is_a--> GO:0016485 * Created link GO:0016486 -OBO_REL:is_a-> GO:0051605 * Deleted GO:0031638 --OBO_REL:is_a--> GO:0016485 * Created link GO:0031638 -OBO_REL:is_a-> GO:0051605 * Deleted GO:0044185 --OBO_REL:is_a--> GO:0044184 * Created link GO:0045695 -OBO_REL:is_a-> GO:0051241 * Created link GO:0045696 -OBO_REL:is_a-> GO:0051240 * Created link GO:0046670 -OBO_REL:is_a-> GO:0051094 * Deleted GO:0051900 --OBO_REL:is_a--> GO:0032844 * Created link GO:0051900 -OBO_REL:is_a-> GO:0003254 * Created link GO:0052004 -OBO_REL:is_a-> GO:0009968 * Created link GO:0052074 -OBO_REL:is_a-> GO:0009967 * Created link GO:0052089 -OBO_REL:is_a-> GO:0009966 * Created link GO:0052089 -OBO_REL:is_a-> GO:0010112 * Created link GO:0052301 -OBO_REL:is_a-> GO:0050848 * Created link GO:0060043 -OBO_REL:is_a-> GO:0055021 * Created link GO:0060281 -OBO_REL:is_a-> GO:0051239 * Deleted GO:0060568 --OBO_REL:is_a--> GO:0070613 * Created link GO:0060568 -OBO_REL:is_a-> GO:0010953 * Deleted GO:0060569 --OBO_REL:is_a--> GO:0051247 * Created link GO:0060569 -OBO_REL:is_a-> GO:0010954 * Deleted GO:0060570 --OBO_REL:is_a--> GO:0051248 * Created link GO:0060570 -OBO_REL:is_a-> GO:0010955 * Created link GO:0070613 -OBO_REL:is_a-> GO:0051246 From gocvs at genome.stanford.edu Sun Oct 18 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Sun, 18 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/18/2009 Message-ID: <200910190430.n9J4UCYJ013633@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.839 by 1.840 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Deleted definition dbxref GOC:jh from GO:0055125 * Added definition dbxref GOC:jh to GO:0055125 From gocvs at genome.stanford.edu Mon Oct 19 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 19 Oct 2009 21:30:13 -0700 Subject: [Go-diff] GO update 10/19/2009 Message-ID: <200910200430.n9K4UDhB003734@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.840 by 1.841 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0090079 * Created object of type obo:TERM with id GO:0090080 * [Changed name of GO:0090079 from "null" to "translation regulator activity, nucleic acid binding", Set definition of GO:0090079 to "Any nucleic acid binding activity involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome.", Added definition dbxref GOC:dph to GO:0090079, Added definition dbxref GOC:tb to GO:0090079, Created link GO:0090079 -OBO_REL:is_a-> GO:0003676, Created link GO:0090079 -OBO_REL:is_a-> GO:0045182, Assigned namespace "molecular_function" to GO:0090079] * Changed name of GO:0090079 from "null" to "translation regulator activity, nucleic acid binding" * Set definition of GO:0090079 to "Any nucleic acid binding activity involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome." * Added definition dbxref GOC:dph to GO:0090079 * Added definition dbxref GOC:tb to GO:0090079 * Created link GO:0090079 -OBO_REL:is_a-> GO:0003676 * Created link GO:0090079 -OBO_REL:is_a-> GO:0045182 * Assigned namespace "molecular_function" to GO:0090079 * [Changed name of GO:0090080 from "null" to "positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway", Set definition of GO:0090080 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in an increase in the rate or frequency of a MAPKKK cascade.", Added definition dbxref GOC:dph to GO:0090080, Added definition dbxref GOC:tb to GO:0090080, Created link GO:0090080 -OBO_REL:is_a-> GO:0043410, Created link GO:0090080 -OBO_REL:is_a-> GO:0008543, Assigned namespace "biological_process" to GO:0090080] * Changed name of GO:0090080 from "null" to "positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway" * Set definition of GO:0090080 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in an increase in the rate or frequency of a MAPKKK cascade." * Added definition dbxref GOC:dph to GO:0090080 * Added definition dbxref GOC:tb to GO:0090080 * Created link GO:0090080 -OBO_REL:is_a-> GO:0043410 * Created link GO:0090080 -OBO_REL:is_a-> GO:0008543 * Assigned namespace "biological_process" to GO:0090080 * Deleted GO:0000900 --OBO_REL:is_a--> GO:0008135 * Created link GO:0000900 -OBO_REL:is_a-> GO:0090079 * Created link GO:0003707 -part_of-> GO:0043401 * Created link GO:0003708 -part_of-> GO:0048384 * Created link GO:0003743 -part_of-> GO:0006413 * Created link GO:0003746 -part_of-> GO:0006414 * Created link GO:0004871 -part_of-> GO:0007165 * Created link GO:0004880 -part_of-> GO:0009755 * Created link GO:0004882 -part_of-> GO:0030521 * Created link GO:0004883 -part_of-> GO:0042921 * Created link GO:0004883 -part_of-> GO:0043402 * Created link GO:0004884 -part_of-> GO:0035076 * Deleted GO:0004952 --OBO_REL:is_a--> GO:0030594 * Deleted GO:0004981 --OBO_REL:is_a--> GO:0015464 * Created link GO:0004981 -OBO_REL:is_a-> GO:0016907 * Created link GO:0004981 -part_of-> GO:0007213 * Created link GO:0008036 -part_of-> GO:0009755 * Created link GO:0008079 -part_of-> GO:0006415 * Deleted GO:0008135 --OBO_REL:is_a--> GO:0045182 * Created link GO:0008135 -part_of-> GO:0006412 * Created link GO:0008434 -part_of-> GO:0070561 * Deleted GO:0008494 --OBO_REL:is_a--> GO:0008135 * Created link GO:0008494 -OBO_REL:is_a-> GO:0090079 * Created link GO:0016907 -part_of-> GO:0007186 * Created link GO:0017082 -part_of-> GO:0031959 * Created link GO:0030284 -part_of-> GO:0030520 * Created link GO:0030594 -part_of-> GO:0007268 * Created link GO:0043404 -part_of-> GO:0009755 * Changed definition of GO:0045182 from "Any substance involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome." to "Any molecular function involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome." From gocvs at genome.stanford.edu Tue Oct 20 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 20 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/20/2009 Message-ID: <200910210430.n9L4UCVp025749@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.841 by 1.844 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003272 * Created object of type obo:TERM with id GO:0003273 * Created object of type obo:TERM with id GO:0003274 * Created object of type obo:TERM with id GO:0003275 * Created object of type obo:TERM with id GO:0003276 * Created object of type obo:TERM with id GO:0003277 * Created object of type obo:TERM with id GO:0003278 * Created object of type obo:TERM with id GO:0003279 * Created object of type obo:TERM with id GO:0003281 * Created object of type obo:TERM with id GO:0003282 * Created object of type obo:TERM with id GO:0003283 * Created object of type obo:TERM with id GO:0003284 * Created object of type obo:TERM with id GO:0003285 * Created object of type obo:TERM with id GO:0003286 * Created object of type obo:TERM with id GO:0003288 * Created object of type obo:TERM with id GO:0003289 * Created object of type obo:TERM with id GO:0003290 * Created object of type obo:TERM with id GO:0003291 * Created object of type obo:TERM with id GO:0003292 * Created object of type obo:TERM with id GO:0003293 * Created object of type obo:TERM with id GO:0044194 * Created object of type obo:TERM with id GO:0044195 * Created object of type obo:TERM with id GO:0044196 * Created object of type obo:TERM with id GO:0044197 * Created object of type obo:TERM with id GO:0044198 * [Changed name of GO:0003272 from "null" to "endocardial cushion formation", Set definition of GO:0003272 to "The developmental process pertaining to the initial formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves.", Added definition dbxref GOC:mtg_heart to GO:0003272, Added definition dbxref PMID:15797462 to GO:0003272, Created link GO:0003272 -part_of-> GO:0003203, Created link GO:0003272 -OBO_REL:is_a-> GO:0048646, Assigned namespace "biological_process" to GO:0003272] * Changed name of GO:0003272 from "null" to "endocardial cushion formation" * Set definition of GO:0003272 to "The developmental process pertaining to the initial formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." * Added definition dbxref GOC:mtg_heart to GO:0003272 * Added definition dbxref PMID:15797462 to GO:0003272 * Created link GO:0003272 -part_of-> GO:0003203 * Created link GO:0003272 -OBO_REL:is_a-> GO:0048646 * Assigned namespace "biological_process" to GO:0003272 * [Changed name of GO:0003273 from "null" to "cell migration involved in endocardial cushion formation", Set definition of GO:0003273 to "The orderly movement of cells from one site to another that will contribute to the formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves.", Added definition dbxref GOC:mtg_heart to GO:0003273, Created link GO:0003273 -part_of-> GO:0003272, Created link GO:0003273 -OBO_REL:is_a-> GO:0060973, Assigned namespace "biological_process" to GO:0003273] * Changed name of GO:0003273 from "null" to "cell migration involved in endocardial cushion formation" * Set definition of GO:0003273 to "The orderly movement of cells from one site to another that will contribute to the formation of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." * Added definition dbxref GOC:mtg_heart to GO:0003273 * Created link GO:0003273 -part_of-> GO:0003272 * Created link GO:0003273 -OBO_REL:is_a-> GO:0060973 * Assigned namespace "biological_process" to GO:0003273 * [Changed name of GO:0003274 from "null" to "endocardial cushion fusion", Set definition of GO:0003274 to "The cell-cell adhesion process of mesenchymal cardiac cushion cells that contributes to the process of cushion shaping.", Added definition dbxref GOC:mtg_heart to GO:0003274, Created link GO:0003274 -OBO_REL:is_a-> GO:0016337, Created link GO:0003274 -part_of-> GO:0003203, Assigned namespace "biological_process" to GO:0003274] * Changed name of GO:0003274 from "null" to "endocardial cushion fusion" * Set definition of GO:0003274 to "The cell-cell adhesion process of mesenchymal cardiac cushion cells that contributes to the process of cushion shaping." * Added definition dbxref GOC:mtg_heart to GO:0003274 * Created link GO:0003274 -OBO_REL:is_a-> GO:0016337 * Created link GO:0003274 -part_of-> GO:0003203 * Assigned namespace "biological_process" to GO:0003274 * [Changed name of GO:0003275 from "null" to "apoptosis involved in outflow tract morphogenesis", Set definition of GO:0003275 to "The apoptosis process that contributes to the shaping of the outflow tract. The outflow tract is the portion of the heart through which blood flows into the arteries.", Added definition dbxref GOC:mtg_heart to GO:0003275, Created link GO:0003275 -part_of-> GO:0003151, Created link GO:0003275 -OBO_REL:is_a-> GO:0003278, Assigned namespace "biological_process" to GO:0003275] * Changed name of GO:0003275 from "null" to "apoptosis involved in outflow tract morphogenesis" * Set definition of GO:0003275 to "The apoptosis process that contributes to the shaping of the outflow tract. The outflow tract is the portion of the heart through which blood flows into the arteries." * Added definition dbxref GOC:mtg_heart to GO:0003275 * Created link GO:0003275 -part_of-> GO:0003151 * Created link GO:0003275 -OBO_REL:is_a-> GO:0003278 * Assigned namespace "biological_process" to GO:0003275 * [Changed name of GO:0003276 from "null" to "apoptosis involved in heart valve morphogenesis", Set definition of GO:0003276 to "The apoptosis process that contributes to the shaping of a heart valve.", Added definition dbxref GOC:mtg_heart to GO:0003276, Created link GO:0003276 -part_of-> GO:0003179, Created link GO:0003276 -OBO_REL:is_a-> GO:0003278, Assigned namespace "biological_process" to GO:0003276] * Changed name of GO:0003276 from "null" to "apoptosis involved in heart valve morphogenesis" * Set definition of GO:0003276 to "The apoptosis process that contributes to the shaping of a heart valve." * Added definition dbxref GOC:mtg_heart to GO:0003276 * Created link GO:0003276 -part_of-> GO:0003179 * Created link GO:0003276 -OBO_REL:is_a-> GO:0003278 * Assigned namespace "biological_process" to GO:0003276 * [Changed name of GO:0003277 from "null" to "apoptosis involved in endocardial cushion morphogenesis", Set definition of GO:0003277 to "The apoptosis process that contributes to the shaping of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves.", Added definition dbxref GOC:mtg_heart to GO:0003277, Created link GO:0003277 -OBO_REL:is_a-> GO:0003278, Created link GO:0003277 -part_of-> GO:0003203, Assigned namespace "cellular_component" to GO:0003277] * Changed name of GO:0003277 from "null" to "apoptosis involved in endocardial cushion morphogenesis" * Set definition of GO:0003277 to "The apoptosis process that contributes to the shaping of an endocardial cushion. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." * Added definition dbxref GOC:mtg_heart to GO:0003277 * Created link GO:0003277 -OBO_REL:is_a-> GO:0003278 * Created link GO:0003277 -part_of-> GO:0003203 * Assigned namespace "cellular_component" to GO:0003277 * [Changed name of GO:0003278 from "null" to "apoptosis involved in heart morphogenesis", Set definition of GO:0003278 to "The process of apoptosis that contributes to the shaping of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003278, Created link GO:0003278 -OBO_REL:is_a-> GO:0060561, Created link GO:0003278 -part_of-> GO:0003007, Assigned namespace "biological_process" to GO:0003278] * Changed name of GO:0003278 from "null" to "apoptosis involved in heart morphogenesis" * Set definition of GO:0003278 to "The process of apoptosis that contributes to the shaping of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003278 * Created link GO:0003278 -OBO_REL:is_a-> GO:0060561 * Created link GO:0003278 -part_of-> GO:0003007 * Assigned namespace "biological_process" to GO:0003278 * [Changed name of GO:0003279 from "null" to "cardiac septum development", Set definition of GO:0003279 to "The progression of a cardiac septum over time, from its initial formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003279, Added synonym "heart septum development" to GO:0003279, Added general dbxref GOC:mtg_heart to synonym heart septum development of GO:0003279, Changed synonym scope of GO:0003279 from "Related" to "Exact", Created link GO:0003279 -OBO_REL:is_a-> GO:0048856, Created link GO:0003279 -part_of-> GO:0003205, Assigned namespace "biological_process" to GO:0003279] * Changed name of GO:0003279 from "null" to "cardiac septum development" * Set definition of GO:0003279 to "The progression of a cardiac septum over time, from its initial formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003279 * Added synonym "heart septum development" to GO:0003279 * Added general dbxref GOC:mtg_heart to synonym heart septum development of GO:0003279 * Changed synonym scope of GO:0003279 from "Related" to "Exact" * Created link GO:0003279 -OBO_REL:is_a-> GO:0048856 * Created link GO:0003279 -part_of-> GO:0003205 * Assigned namespace "biological_process" to GO:0003279 * [Changed name of GO:0003281 from "null" to "ventricular septum development", Set definition of GO:0003281 to "The progression of the ventricular septum over time from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003281, Added synonym "interventricular septum development" to GO:0003281, Added general dbxref GOC:mtg_heart to synonym interventricular septum development of GO:0003281, Changed synonym scope of GO:0003281 from "Related" to "Exact", Added synonym "septum inferius development" to GO:0003281, Added general dbxref GOC:mtg_heart to synonym septum inferius development of GO:0003281, Changed synonym scope of GO:0003281 from "Related" to "Narrow", Created link GO:0003281 -part_of-> GO:0003231, Created link GO:0003281 -OBO_REL:is_a-> GO:0003279, Assigned namespace "biological_process" to GO:0003281] * Changed name of GO:0003281 from "null" to "ventricular septum development" * Set definition of GO:0003281 to "The progression of the ventricular septum over time from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003281 * Added synonym "interventricular septum development" to GO:0003281 * Added general dbxref GOC:mtg_heart to synonym interventricular septum development of GO:0003281 * Changed synonym scope of GO:0003281 from "Related" to "Exact" * Added synonym "septum inferius development" to GO:0003281 * Added general dbxref GOC:mtg_heart to synonym septum inferius development of GO:0003281 * Changed synonym scope of GO:0003281 from "Related" to "Narrow" * Created link GO:0003281 -part_of-> GO:0003231 * Created link GO:0003281 -OBO_REL:is_a-> GO:0003279 * Assigned namespace "biological_process" to GO:0003281 * [Changed name of GO:0003282 from "null" to "ventricular septum intermedium development", Set definition of GO:0003282 to "The progression of the ventricular septum intermedium over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003282, Created link GO:0003282 -OBO_REL:is_a-> GO:0003281, Assigned namespace "biological_process" to GO:0003282] * Changed name of GO:0003282 from "null" to "ventricular septum intermedium development" * Set definition of GO:0003282 to "The progression of the ventricular septum intermedium over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003282 * Created link GO:0003282 -OBO_REL:is_a-> GO:0003281 * Assigned namespace "biological_process" to GO:0003282 * [Changed name of GO:0003283 from "null" to "atrial septum development", Set definition of GO:0003283 to "The progression of the atrial septum over time, from its initial formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003283, Created link GO:0003283 -OBO_REL:is_a-> GO:0003279, Created link GO:0003283 -part_of-> GO:0003230, Assigned namespace "biological_process" to GO:0003283] * Changed name of GO:0003283 from "null" to "atrial septum development" * Set definition of GO:0003283 to "The progression of the atrial septum over time, from its initial formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003283 * Created link GO:0003283 -OBO_REL:is_a-> GO:0003279 * Created link GO:0003283 -part_of-> GO:0003230 * Assigned namespace "biological_process" to GO:0003283 * [Changed name of GO:0003284 from "null" to "septum primum development", Set definition of GO:0003284 to "The progression of the septum primum over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003284, Created link GO:0003284 -OBO_REL:is_a-> GO:0003283, Assigned namespace "biological_process" to GO:0003284] * Changed name of GO:0003284 from "null" to "septum primum development" * Set definition of GO:0003284 to "The progression of the septum primum over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003284 * Created link GO:0003284 -OBO_REL:is_a-> GO:0003283 * Assigned namespace "biological_process" to GO:0003284 * [Changed name of GO:0003285 from "null" to "septum secundum development", Set definition of GO:0003285 to "The progression of the septum secundum over time, from its initial formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003285, Created link GO:0003285 -OBO_REL:is_a-> GO:0003283, Assigned namespace "biological_process" to GO:0003285] * Changed name of GO:0003285 from "null" to "septum secundum development" * Set definition of GO:0003285 to "The progression of the septum secundum over time, from its initial formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003285 * Created link GO:0003285 -OBO_REL:is_a-> GO:0003283 * Assigned namespace "biological_process" to GO:0003285 * [Changed name of GO:0003286 from "null" to "atrial septum intermedium development", Set definition of GO:0003286 to "The progression of the atrial septum intermedium over time, from its formation to the mature structure.", Added definition dbxref GOC:mtg_heart to GO:0003286, Created link GO:0003286 -OBO_REL:is_a-> GO:0003283, Assigned namespace "biological_process" to GO:0003286] * Changed name of GO:0003286 from "null" to "atrial septum intermedium development" * Set definition of GO:0003286 to "The progression of the atrial septum intermedium over time, from its formation to the mature structure." * Added definition dbxref GOC:mtg_heart to GO:0003286 * Created link GO:0003286 -OBO_REL:is_a-> GO:0003283 * Assigned namespace "biological_process" to GO:0003286 * [Changed name of GO:0003288 from "null" to "ventricular septum intermedium morphogenesis", Set definition of GO:0003288 to "The developmental process by which a ventricular septum intermedium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003288, Created link GO:0003288 -OBO_REL:is_a-> GO:0060412, Assigned namespace "biological_process" to GO:0003288] * Changed name of GO:0003288 from "null" to "ventricular septum intermedium morphogenesis" * Set definition of GO:0003288 to "The developmental process by which a ventricular septum intermedium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003288 * Created link GO:0003288 -OBO_REL:is_a-> GO:0060412 * Assigned namespace "biological_process" to GO:0003288 * [Changed name of GO:0003289 from "null" to "atrial septum primum morphogenesis", Set definition of GO:0003289 to "The process by which anatomical structure of an atrial septum primum is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003289, Created link GO:0003289 -part_of-> GO:0003284, Created link GO:0003289 -OBO_REL:is_a-> GO:0060413, Assigned namespace "biological_process" to GO:0003289] * Changed name of GO:0003289 from "null" to "atrial septum primum morphogenesis" * Set definition of GO:0003289 to "The process by which anatomical structure of an atrial septum primum is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003289 * Created link GO:0003289 -part_of-> GO:0003284 * Created link GO:0003289 -OBO_REL:is_a-> GO:0060413 * Assigned namespace "biological_process" to GO:0003289 * [Changed name of GO:0003290 from "null" to "atrial septum secundum morphogenesis", Set definition of GO:0003290 to "The process by which anatomical structure of an atrial septum secundum is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003290, Created link GO:0003290 -part_of-> GO:0003285, Created link GO:0003290 -OBO_REL:is_a-> GO:0060413, Assigned namespace "biological_process" to GO:0003290] * Changed name of GO:0003290 from "null" to "atrial septum secundum morphogenesis" * Set definition of GO:0003290 to "The process by which anatomical structure of an atrial septum secundum is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003290 * Created link GO:0003290 -part_of-> GO:0003285 * Created link GO:0003290 -OBO_REL:is_a-> GO:0060413 * Assigned namespace "biological_process" to GO:0003290 * [Changed name of GO:0003291 from "null" to "atrial septum intermedium morphogenesis", Set definition of GO:0003291 to "The process by which anatomical structure of an atrial septum intermedium is generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003291, Created link GO:0003291 -OBO_REL:is_a-> GO:0060413, Created link GO:0003291 -part_of-> GO:0003286, Assigned namespace "biological_process" to GO:0003291] * Changed name of GO:0003291 from "null" to "atrial septum intermedium morphogenesis" * Set definition of GO:0003291 to "The process by which anatomical structure of an atrial septum intermedium is generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003291 * Created link GO:0003291 -OBO_REL:is_a-> GO:0060413 * Created link GO:0003291 -part_of-> GO:0003286 * Assigned namespace "biological_process" to GO:0003291 * [Changed name of GO:0003292 from "null" to "cardiac septum cell differentiation", Set definition of GO:0003292 to "The process by which an endocardial cushion cell becomes a cell of a cardiac septum.", Added definition dbxref GOC:mtg_heart to GO:0003292, Created link GO:0003292 -OBO_REL:is_a-> GO:0035051, Created link GO:0003292 -part_of-> GO:0003279, Assigned namespace "biological_process" to GO:0003292] * Changed name of GO:0003292 from "null" to "cardiac septum cell differentiation" * Set definition of GO:0003292 to "The process by which an endocardial cushion cell becomes a cell of a cardiac septum." * Added definition dbxref GOC:mtg_heart to GO:0003292 * Created link GO:0003292 -OBO_REL:is_a-> GO:0035051 * Created link GO:0003292 -part_of-> GO:0003279 * Assigned namespace "biological_process" to GO:0003292 * [Changed name of GO:0003293 from "null" to "heart valve cell differentiation", Set definition of GO:0003293 to "The process by which an endocardial cushion cell give rise to a cell that is part of a heart valve.", Added definition dbxref GOC:mtg_heart to GO:0003293, Created link GO:0003293 -OBO_REL:is_a-> GO:0035051, Created link GO:0003293 -part_of-> GO:0003170, Assigned namespace "biological_process" to GO:0003293] * Changed name of GO:0003293 from "null" to "heart valve cell differentiation" * Set definition of GO:0003293 to "The process by which an endocardial cushion cell give rise to a cell that is part of a heart valve." * Added definition dbxref GOC:mtg_heart to GO:0003293 * Created link GO:0003293 -OBO_REL:is_a-> GO:0035051 * Created link GO:0003293 -part_of-> GO:0003170 * Assigned namespace "biological_process" to GO:0003293 * [Changed name of GO:0044194 from "null" to "cytolytic granule", Set definition of GO:0044194 to "A specialized secretory lysosome that is present in cells with cytolytic capability such as cytotoxic T lymphocytes and natural killer cells. Cytolytic granules mediate the storage and regulated excretion of lytic molecules for killing of target cells.", Added definition dbxref GOC:jl to GO:0044194, Added definition dbxref PMID:11052265 to GO:0044194, Added definition dbxref PMID:12766758 to GO:0044194, Created link GO:0044194 -OBO_REL:is_a-> GO:0005764, Assigned namespace "cellular_component" to GO:0044194] * Changed name of GO:0044194 from "null" to "cytolytic granule" * Set definition of GO:0044194 to "A specialized secretory lysosome that is present in cells with cytolytic capability such as cytotoxic T lymphocytes and natural killer cells. Cytolytic granules mediate the storage and regulated excretion of lytic molecules for killing of target cells." * Added definition dbxref GOC:jl to GO:0044194 * Added definition dbxref PMID:11052265 to GO:0044194 * Added definition dbxref PMID:12766758 to GO:0044194 * Created link GO:0044194 -OBO_REL:is_a-> GO:0005764 * Assigned namespace "cellular_component" to GO:0044194 * [Changed name of GO:0044195 from "null" to "nucleoplasmic reticulum", Set definition of GO:0044195 to "Long, dynamic tubular channels, formed by invagination of the nuclear envelope, that extend deep into the nucleoplasm. The channels have an underlying lamina and are implicated in functioning in signaling and transport.", Added definition dbxref GOC:jl to GO:0044195, Added definition dbxref PMID:17959832 to GO:0044195, Added definition dbxref PMID:9024685 to GO:0044195, Added synonym "nuclear channels" to GO:0044195, Changed synonym scope of GO:0044195 from "Related" to "Exact", Created link GO:0044195 -OBO_REL:is_a-> GO:0044428, Created link GO:0044195 -part_of-> GO:0005635, Assigned namespace "cellular_component" to GO:0044195] * Changed name of GO:0044195 from "null" to "nucleoplasmic reticulum" * Set definition of GO:0044195 to "Long, dynamic tubular channels, formed by invagination of the nuclear envelope, that extend deep into the nucleoplasm. The channels have an underlying lamina and are implicated in functioning in signaling and transport." * Added definition dbxref GOC:jl to GO:0044195 * Added definition dbxref PMID:17959832 to GO:0044195 * Added definition dbxref PMID:9024685 to GO:0044195 * Added synonym "nuclear channels" to GO:0044195 * Changed synonym scope of GO:0044195 from "Related" to "Exact" * Created link GO:0044195 -OBO_REL:is_a-> GO:0044428 * Created link GO:0044195 -part_of-> GO:0005635 * Assigned namespace "cellular_component" to GO:0044195 * [Changed name of GO:0044196 from "null" to "host cell nucleolus", Set definition of GO:0044196 to "A small, dense body one or more of which are present in the nucleus of eukaryotic host cells.", Added definition dbxref GOC:jl to GO:0044196, Added GO:0044196 to category gosubset_prok, Created link GO:0044196 -OBO_REL:is_a-> GO:0044094, Assigned namespace "cellular_component" to GO:0044196] * Changed name of GO:0044196 from "null" to "host cell nucleolus" * Set definition of GO:0044196 to "A small, dense body one or more of which are present in the nucleus of eukaryotic host cells." * Added definition dbxref GOC:jl to GO:0044196 * Added GO:0044196 to category gosubset_prok * Created link GO:0044196 -OBO_REL:is_a-> GO:0044094 * Assigned namespace "cellular_component" to GO:0044196 * [Changed name of GO:0044197 from "null" to "Rel homology domain binding", Set definition of GO:0044197 to "Interacting selectively and non-covalently with a Rel Homology Domain (RHD) of a protein. The RHD is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish and NFAT.", Added definition dbxref http://en.wikipedia.org/wiki/Rel_homology_domain to GO:0044197, Added synonym "RHD binding" to GO:0044197, Changed synonym scope of GO:0044197 from "Related" to "Exact", Created link GO:0044197 -OBO_REL:is_a-> GO:0019904, Assigned namespace "molecular_function" to GO:0044197] * Changed name of GO:0044197 from "null" to "Rel homology domain binding" * Set definition of GO:0044197 to "Interacting selectively and non-covalently with a Rel Homology Domain (RHD) of a protein. The RHD is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish and NFAT." * Added definition dbxref http://en.wikipedia.org/wiki/Rel_homology_domain to GO:0044197 * Added synonym "RHD binding" to GO:0044197 * Changed synonym scope of GO:0044197 from "Related" to "Exact" * Created link GO:0044197 -OBO_REL:is_a-> GO:0019904 * Assigned namespace "molecular_function" to GO:0044197 * [Changed name of GO:0044198 from "null" to "zf-TRAF domain binding", Set definition of GO:0044198 to "Interacting selectively and non-covalently with a TRAF-type zinc finger domain of a protein.", Added definition dbxref IPR:001293 to GO:0044198, Added synonym "TRAF-type zinc finger domain binding" to GO:0044198, Added synonym "zinc finger TRAF-type domain binding" to GO:0044198, Changed synonym scope of GO:0044198 from "Related" to "Exact", Added synonym "zinc-finger-TRAF domain binding" to GO:0044198, Changed synonym scope of GO:0044198 from "Related" to "Exact", Created link GO:0044198 -OBO_REL:is_a-> GO:0019904, Assigned namespace "molecular_function" to GO:0044198] * Changed name of GO:0044198 from "null" to "zf-TRAF domain binding" * Set definition of GO:0044198 to "Interacting selectively and non-covalently with a TRAF-type zinc finger domain of a protein." * Added definition dbxref IPR:001293 to GO:0044198 * Added synonym "TRAF-type zinc finger domain binding" to GO:0044198 * Added synonym "zinc finger TRAF-type domain binding" to GO:0044198 * Changed synonym scope of GO:0044198 from "Related" to "Exact" * Added synonym "zinc-finger-TRAF domain binding" to GO:0044198 * Changed synonym scope of GO:0044198 from "Related" to "Exact" * Created link GO:0044198 -OBO_REL:is_a-> GO:0019904 * Assigned namespace "molecular_function" to GO:0044198 * Deleted GO:0002003 --OBO_REL:is_a--> GO:0051605 * Deleted GO:0003143 --OBO_REL:is_a--> GO:0002009 * Added definition dbxref GOC:mtg_heart to GO:0003156 * Changed definition of GO:0003197 from "The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of the endocardium that will give rise to the heart septa and valves." to "The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." * Deleted GO:0003197 --part_of--> GO:0003157 * Created link GO:0003197 -part_of-> GO:0007507 * Created link GO:0003198 -part_of-> GO:0003272 * Changed definition of GO:0003203 from "The process by which the anatomical structure of the endocardial cushion is generated and organized. The endocardial cushion is a specialized region of the endocardium that will give rise to the heart septa and valves." to "The process by which the anatomical structure of the endocardial cushion is generated and organized. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves." * Deleted GO:0003203 --part_of--> GO:0003160 * Created link GO:0003203 -part_of-> GO:0003007 * Changed definition of GO:0003259 from "The orderly movement of cardiac progenitor cells toward the head and laterally to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart." to "The orderly movement of cardioblasts toward the head and laterally to form the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003260 from "The orderly movement of cardiac progenitor cells to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart." to "The orderly movement of cardiac progenitor cells to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003263 from "The multiplication or reproduction of cardioblasts, resulting in the expansion of the population in the heart field." to "The multiplication or reproduction of cardioblasts, resulting in the expansion of the population in the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003264 from "Any process that modulates the frequency, rate or extent of cardioblast proliferation." to "Any process that modulates the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003265 from "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the first heart field." to "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the first heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003266 from "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the second heart field." to "Any process that modulates the frequency, rate or extent of cardioblast proliferation in the second heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003267 from "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of a target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of a target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003268 from "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in the modulation of the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003269 from "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor resulting in the modulation of the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003270 from "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." to "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell resulting in the modulation of the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0003271 from "The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened resulting in the modulation of the frequency, rate or extent of cardioblast proliferation." to "The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened resulting in the modulation of the frequency, rate or extent of cardioblast proliferation. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0007510 from "Process by which a cell becomes capable of differentiating autonomously into a cardioblast cell regardless of its environment; upon determination, the cell fate cannot be reversed." to "Process by which a cell becomes capable of differentiating autonomously into a cardioblast cell regardless of its environment; upon determination, the cell fate cannot be reversed. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0009997 from "Any process that restricts, stops or prevents a cell from specifying into a cardioblast." to "Any process that restricts, stops or prevents a cell from specifying into a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Deleted GO:0010422 --OBO_REL:is_a--> GO:0046885 * Deleted GO:0010423 --OBO_REL:is_a--> GO:0032353 * Deleted GO:0010696 --OBO_REL:is_a--> GO:0048522 * Deleted GO:0015296 --OBO_REL:is_a--> GO:0008324 * Deleted GO:0015367 --OBO_REL:is_a--> GO:0015300 * Deleted GO:0022853 --part_of--> GO:0034220 * Deleted GO:0030070 --OBO_REL:is_a--> GO:0051605 * Deleted GO:0031536 --OBO_REL:is_a--> GO:0048522 * Deleted GO:0032455 --OBO_REL:is_a--> GO:0051605 * Deleted GO:0034230 --OBO_REL:is_a--> GO:0051605 * Deleted GO:0034959 --OBO_REL:is_a--> GO:0051605 * Changed definition of GO:0042684 from "The process by which a cell becomes committed to becoming a cardioblast." to "The process by which a cell becomes committed to becoming a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0042685 from "Process by which a cell becomes capable of differentiating autonomously into a cardioblast cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed." to "Process by which a cell becomes capable of differentiating autonomously into a cardioblast cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0042686 from "Any process that mediates the specification of a cell into a cardioblast." to "Any process that mediates the specification of a cell into a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Deleted GO:0045704 --OBO_REL:is_a--> GO:0051239 * Deleted GO:0045704 --OBO_REL:is_a--> GO:0022603 * Deleted GO:0045836 --OBO_REL:is_a--> GO:0048522 * Deleted GO:0045884 --OBO_REL:is_a--> GO:0042981 * Deleted GO:0045885 --OBO_REL:is_a--> GO:0006916 * Deleted GO:0046668 --OBO_REL:is_a--> GO:0050793 * Changed definition of GO:0051890 from "Any process that modulates the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast." to "Any process that modulates the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0051891 from "Any process that activates or increases the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast." to "Any process that activates or increases the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Changed definition of GO:0051892 from "Any process that stops, prevents or reduces the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast." to "Any process that stops, prevents or reduces the frequency, rate or extent of cardioblast differentiation, the process whereby a relatively unspecialized mesodermal cell acquires the specialized structural and/or functional features of a cardioblast. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Deleted GO:0051900 --OBO_REL:is_a--> GO:0050794 * Deleted GO:0055019 --OBO_REL:is_a--> GO:0051093 * Deleted GO:0055020 --OBO_REL:is_a--> GO:0051094 * Deleted GO:0060043 --OBO_REL:is_a--> GO:0050793 * Deleted GO:0060043 --OBO_REL:is_a--> GO:0051239 * Deleted GO:0060211 --OBO_REL:is_a--> GO:0051252 * Changed definition of GO:0060214 from "Formation of the inner endothelial cell layer of the heart, which connects the heart to the vascular system." to "Formation of the inner endothelial layer of the heart." * Deleted GO:0060371 --OBO_REL:is_a--> GO:0050794 * Deleted GO:0060371 --OBO_REL:is_a--> GO:0032844 * Deleted GO:0060373 --OBO_REL:is_a--> GO:0050794 * Deleted GO:0060373 --OBO_REL:is_a--> GO:0032844 * Changed name of GO:0060411 from "heart septum morphogenesis" to "cardiac septum morphogenesis" * added secondary id GO:0003280 to GO:0060411 * Changed definition of GO:0060411 from "The developmental process by which a heart septum is generated and organized. A heart septum is an anatomical structure that separates parts of the heart." to "The process by which the anatomical structure of a cardiac septum is generated and organized. A cardiac septum is a partition that separates parts of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060411 * Added synonym "heart septum morphogenesis" to GO:0060411 * Changed synonym scope of GO:0060411 from "Related" to "Exact" * Created link GO:0060411 -part_of-> GO:0003279 * Created link GO:0060412 -part_of-> GO:0003281 * added secondary id GO:0003287 to GO:0060413 * Added definition dbxref GOC:mtg_heart to GO:0060413 * Added synonym "atrial septum morphogenesis" to GO:0060413 * Changed synonym scope of GO:0060413 from "Related" to "Exact" * Created link GO:0060413 -part_of-> GO:0003209 * Created link GO:0060413 -part_of-> GO:0003283 * Deleted GO:0060903 --OBO_REL:is_a--> GO:0048522 * Deleted GO:0060941 --OBO_REL:is_a--> GO:0060911 * Changed definition of GO:0060975 from "The orderly movement of cardiac progenitor cells toward the midline to form the heart field. Cardiac progenitor cells are non-terminally differentiated, mesoderm-derived cells that are committed to differentiate into cells of the heart." to "The orderly movement of cardioblasts toward the midline to form the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating." * Deleted GO:0075049 --OBO_REL:is_a--> GO:0040012 * Deleted GO:0075054 --OBO_REL:is_a--> GO:0040012 * Deleted GO:0075198 --OBO_REL:is_a--> GO:0040012 * Deleted GO:0075202 --OBO_REL:is_a--> GO:0040012 * Deleted GO:0080092 --OBO_REL:is_a--> GO:0048638 From gocvs at genome.stanford.edu Wed Oct 21 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 21 Oct 2009 21:30:13 -0700 Subject: [Go-diff] GO update 10/21/2009 Message-ID: <200910220430.n9M4UDxT019751@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.844 by 1.846 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Deleted GO:0015661 --OBO_REL:is_a--> GO:0015562 * Created link GO:0015661 -OBO_REL:is_a-> GO:0034639 * Changed definition of GO:0022857 from "Catalysis of the transfer of a substance from one side of a membrane to the other." to "Enables of the transfer of a substance from one side of a membrane to the other." * Changed name of GO:0070297 from "regulation of two-component signal transduction" to "regulation of two-component signal transduction system (phosphorelay)" * Changed name of GO:0070298 from "negative regulation of two-component signal transduction" to "negative regulation of two-component signal transduction system (phosphorelay)" * Changed name of GO:0070299 from "positive regulation of two-component signal transduction" to "positive regulation of two-component signal transduction system (phosphorelay)" * Changed name of GO:0075156 from "regulation of G-protein coupled receptor protein-mediated signal transduction in response to host" to "regulation of G-protein coupled receptor protein signaling pathway in response to host" * Changed name of GO:0075157 from "positive regulation of G-protein coupled receptor protein-mediated signal transduction in response to host" to "positive regulation of G-protein coupled receptor protein signaling pathway in response to host" * Changed name of GO:0075158 from "negative regulation of G-protein coupled receptor protein-mediated signal transduction in response to host" to "negative regulation of G-protein coupled receptor protein signaling pathway in response to host" From gocvs at genome.stanford.edu Thu Oct 22 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 22 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/22/2009 Message-ID: <200910230430.n9N4UCnU010186@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.846 by 1.853 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0002151 * Created object of type obo:TERM with id GO:0003294 * Created object of type obo:TERM with id GO:0003295 * Created object of type obo:TERM with id GO:0003296 * Created object of type obo:TERM with id GO:0003297 * Created object of type obo:TERM with id GO:0003298 * Created object of type obo:TERM with id GO:0003299 * Created object of type obo:TERM with id GO:0003300 * Created object of type obo:TERM with id GO:0003301 * Created object of type obo:TERM with id GO:0003302 * Created object of type obo:TERM with id GO:0003303 * Created object of type obo:TERM with id GO:0003304 * Created object of type obo:TERM with id GO:0003305 * Created object of type obo:TERM with id GO:0003306 * Created object of type obo:TERM with id GO:0003307 * Created object of type obo:TERM with id GO:0003308 * Created object of type obo:TERM with id GO:0044199 * Created object of type obo:TERM with id GO:0044200 * Created object of type obo:TERM with id GO:0044201 * Created object of type obo:TERM with id GO:0044202 * Created object of type obo:TERM with id GO:0044203 * Created object of type obo:TERM with id GO:0044204 * Created object of type obo:TERM with id GO:0044205 * Created object of type obo:TERM with id GO:0044206 * Created object of type obo:TERM with id GO:0044207 * Created object of type obo:TERM with id GO:0044208 * Created object of type obo:TERM with id GO:0044209 * Created object of type obo:TERM with id GO:0044210 * Created object of type obo:TERM with id GO:0044211 * Created object of type obo:TERM with id GO:0055129 * Created object of type obo:TERM with id GO:0055130 * Created object of type obo:TERM with id GO:0055131 * [Changed name of GO:0002151 from "null" to "G quadraplex RNA binding", Added comment "The structures of RNA and DNA G quartets differ regarding sugar conformation so that a protein binding to the RNA structure might not bind to the DNA structure.", Set definition of GO:0002151 to "Interacting selectively and non-covalently with G-quadraplex RNA structures, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad.", Added definition dbxref PMID:18294969 to GO:0002151, Added definition dbxref PMID:18568163 to GO:0002151, Added definition dbxref PMID:19330720 to GO:0002151, Added synonym "G quartet binding" to GO:0002151, Changed synonym scope of GO:0002151 from "Related" to "Broad", Added synonym "G quartet RNA binding" to GO:0002151, Changed synonym scope of GO:0002151 from "Related" to "Exact", Created link GO:0002151 -OBO_REL:is_a-> GO:0003723, Assigned namespace "molecular_function" to GO:0002151] * Changed name of GO:0002151 from "null" to "G quadraplex RNA binding" * Added comment "The structures of RNA and DNA G quartets differ regarding sugar conformation so that a protein binding to the RNA structure might not bind to the DNA structure." * Set definition of GO:0002151 to "Interacting selectively and non-covalently with G-quadraplex RNA structures, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad." * Added definition dbxref PMID:18294969 to GO:0002151 * Added definition dbxref PMID:18568163 to GO:0002151 * Added definition dbxref PMID:19330720 to GO:0002151 * Added synonym "G quartet binding" to GO:0002151 * Changed synonym scope of GO:0002151 from "Related" to "Broad" * Added synonym "G quartet RNA binding" to GO:0002151 * Changed synonym scope of GO:0002151 from "Related" to "Exact" * Created link GO:0002151 -OBO_REL:is_a-> GO:0003723 * Assigned namespace "molecular_function" to GO:0002151 * [Changed name of GO:0003294 from "null" to "atrial ventricular junction remodeling", Set definition of GO:0003294 to "The tissue remodeling process that contributes to the process by which the connection between an atrium and a ventricle of the heart are connected.", Added definition dbxref GOC:mtg_heart to GO:0003294, Created link GO:0003294 -part_of-> GO:0003007, Created link GO:0003294 -OBO_REL:is_a-> GO:0048771, Assigned namespace "biological_process" to GO:0003294] * Changed name of GO:0003294 from "null" to "atrial ventricular junction remodeling" * Set definition of GO:0003294 to "The tissue remodeling process that contributes to the process by which the connection between an atrium and a ventricle of the heart are connected." * Added definition dbxref GOC:mtg_heart to GO:0003294 * Created link GO:0003294 -part_of-> GO:0003007 * Created link GO:0003294 -OBO_REL:is_a-> GO:0048771 * Assigned namespace "biological_process" to GO:0003294 * [Changed name of GO:0003295 from "null" to "cell proliferation involved in atrial ventricular junction remodeling", Set definition of GO:0003295 to "The multiplication or reproduction of cells that contributes to the shaping of the artial ventricular junction.", Added definition dbxref GOC:mtg_heart to GO:0003295, Created link GO:0003295 -OBO_REL:is_a-> GO:0008283, Created link GO:0003295 -part_of-> GO:0003294, Assigned namespace "biological_process" to GO:0003295] * Changed name of GO:0003295 from "null" to "cell proliferation involved in atrial ventricular junction remodeling" * Set definition of GO:0003295 to "The multiplication or reproduction of cells that contributes to the shaping of the artial ventricular junction." * Added definition dbxref GOC:mtg_heart to GO:0003295 * Created link GO:0003295 -OBO_REL:is_a-> GO:0008283 * Created link GO:0003295 -part_of-> GO:0003294 * Assigned namespace "biological_process" to GO:0003295 * [Changed name of GO:0003296 from "null" to "apoptosis involved in atrial ventricular junction remodelling", Set definition of GO:0003296 to "The process of apoptosis that contributes to the shaping of the atrial ventricular junction.", Added definition dbxref GOC:mtg_heart to GO:0003296, Created link GO:0003296 -OBO_REL:is_a-> GO:0003278, Created link GO:0003296 -part_of-> GO:0003294, Assigned namespace "biological_process" to GO:0003296] * Changed name of GO:0003296 from "null" to "apoptosis involved in atrial ventricular junction remodelling" * Set definition of GO:0003296 to "The process of apoptosis that contributes to the shaping of the atrial ventricular junction." * Added definition dbxref GOC:mtg_heart to GO:0003296 * Created link GO:0003296 -OBO_REL:is_a-> GO:0003278 * Created link GO:0003296 -part_of-> GO:0003294 * Assigned namespace "biological_process" to GO:0003296 * [Changed name of GO:0003297 from "null" to "heart wedging", Set definition of GO:0003297 to "The morphogenic process by which the aorta inserts between the atrioventricular valves that contributes to the shaping of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003297, Created link GO:0003297 -part_of-> GO:0003007, Created link GO:0003297 -OBO_REL:is_a-> GO:0035239, Assigned namespace "biological_process" to GO:0003297] * Changed name of GO:0003297 from "null" to "heart wedging" * Set definition of GO:0003297 to "The morphogenic process by which the aorta inserts between the atrioventricular valves that contributes to the shaping of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003297 * Created link GO:0003297 -part_of-> GO:0003007 * Created link GO:0003297 -OBO_REL:is_a-> GO:0035239 * Assigned namespace "biological_process" to GO:0003297 * [Changed name of GO:0003298 from "null" to "physiological muscle hypertrophy", Set definition of GO:0003298 to "The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells. Physiological hypertrophy is a normal process during development.", Added definition dbxref GOC:mtg_heart to GO:0003298, Created link GO:0003298 -OBO_REL:is_a-> GO:0014896, Assigned namespace "biological_process" to GO:0003298] * Changed name of GO:0003298 from "null" to "physiological muscle hypertrophy" * Set definition of GO:0003298 to "The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells. Physiological hypertrophy is a normal process during development." * Added definition dbxref GOC:mtg_heart to GO:0003298 * Created link GO:0003298 -OBO_REL:is_a-> GO:0014896 * Assigned namespace "biological_process" to GO:0003298 * [Changed name of GO:0003299 from "null" to "muscle hypertrophy in response to stress", Set definition of GO:0003299 to "The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells as a result of a disturbance in organismal or cellular homeostasis.", Added definition dbxref GOC:mtg_heart to GO:0003299, Created link GO:0003299 -OBO_REL:is_a-> GO:0006950, Created link GO:0003299 -OBO_REL:is_a-> GO:0014896, Assigned namespace "biological_process" to GO:0003299] * Changed name of GO:0003299 from "null" to "muscle hypertrophy in response to stress" * Set definition of GO:0003299 to "The enlargement or overgrowth of all or part of a muscle organ or tissue due to an increase in the size of its muscle cells as a result of a disturbance in organismal or cellular homeostasis." * Added definition dbxref GOC:mtg_heart to GO:0003299 * Created link GO:0003299 -OBO_REL:is_a-> GO:0006950 * Created link GO:0003299 -OBO_REL:is_a-> GO:0014896 * Assigned namespace "biological_process" to GO:0003299 * [Changed name of GO:0003300 from "null" to "cardiac muscle hypertropy", Set definition of GO:0003300 to "The enlargement or overgrowth of all or part of the heart due to an increase in size of cardiac muscle cells without cell division.", Added definition dbxref GOC:mtg_heart to GO:0003300, Created link GO:0003300 -OBO_REL:is_a-> GO:0014897, Assigned namespace "biological_process" to GO:0003300] * Changed name of GO:0003300 from "null" to "cardiac muscle hypertropy" * Set definition of GO:0003300 to "The enlargement or overgrowth of all or part of the heart due to an increase in size of cardiac muscle cells without cell division." * Added definition dbxref GOC:mtg_heart to GO:0003300 * Created link GO:0003300 -OBO_REL:is_a-> GO:0014897 * Assigned namespace "biological_process" to GO:0003300 * [Changed name of GO:0003301 from "null" to "physiological cardiac muscle hypertrophy", Set definition of GO:0003301 to "The enlargement or overgrowth of all or part of the heart due to an increase in size of cardiac muscle cells without cell division. This process contributes to the developmental growth of the heart.", Added definition dbxref GOC:mtg_heart to GO:0003301, Created link GO:0003301 -part_of-> GO:0055017, Created link GO:0003301 -OBO_REL:is_a-> GO:0003300, Assigned namespace "biological_process" to GO:0003301] * Changed name of GO:0003301 from "null" to "physiological cardiac muscle hypertrophy" * Set definition of GO:0003301 to "The enlargement or overgrowth of all or part of the heart due to an increase in size of cardiac muscle cells without cell division. This process contributes to the developmental growth of the heart." * Added definition dbxref GOC:mtg_heart to GO:0003301 * Created link GO:0003301 -part_of-> GO:0055017 * Created link GO:0003301 -OBO_REL:is_a-> GO:0003300 * Assigned namespace "biological_process" to GO:0003301 * [Changed name of GO:0003302 from "null" to "transforming growth factor beta receptor signaling pathway involved in heart jogging", Set definition of GO:0003302 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands that contributes to the process of heart jogging.", Added definition dbxref GOC:mtg_heart to GO:0003302, Added synonym "nodal signaling involved in heart jogging" to GO:0003302, Added general dbxref GOC:mtg_heart to synonym nodal signaling involved in heart jogging of GO:0003302, Changed synonym scope of GO:0003302 from "Related" to "Narrow", Created link GO:0003302 -part_of-> GO:0003146, Created link GO:0003302 -OBO_REL:is_a-> GO:0007179, Assigned namespace "biological_process" to GO:0003302] * Changed name of GO:0003302 from "null" to "transforming growth factor beta receptor signaling pathway involved in heart jogging" * Set definition of GO:0003302 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands that contributes to the process of heart jogging." * Added definition dbxref GOC:mtg_heart to GO:0003302 * Added synonym "nodal signaling involved in heart jogging" to GO:0003302 * Added general dbxref GOC:mtg_heart to synonym nodal signaling involved in heart jogging of GO:0003302 * Changed synonym scope of GO:0003302 from "Related" to "Narrow" * Created link GO:0003302 -part_of-> GO:0003146 * Created link GO:0003302 -OBO_REL:is_a-> GO:0007179 * Assigned namespace "biological_process" to GO:0003302 * [Changed name of GO:0003303 from "null" to "BMP signaling pathway involved in heart jogging", Set definition of GO:0003303 to "The series of molecular signals generated as a consequence of a bone morphogenic protein receptor binding to one of its physiological ligands that contributes to the process of heart jogging.", Added definition dbxref GOC:mtg_heart to GO:0003303, Created link GO:0003303 -OBO_REL:is_a-> GO:0030509, Created link GO:0003303 -part_of-> GO:0003146, Assigned namespace "biological_process" to GO:0003303] * Changed name of GO:0003303 from "null" to "BMP signaling pathway involved in heart jogging" * Set definition of GO:0003303 to "The series of molecular signals generated as a consequence of a bone morphogenic protein receptor binding to one of its physiological ligands that contributes to the process of heart jogging." * Added definition dbxref GOC:mtg_heart to GO:0003303 * Created link GO:0003303 -OBO_REL:is_a-> GO:0030509 * Created link GO:0003303 -part_of-> GO:0003146 * Assigned namespace "biological_process" to GO:0003303 * [Changed name of GO:0003304 from "null" to "myocardial epithelial involution involved in heart jogging", Set definition of GO:0003304 to "The morphogenetic process by which the myocardium bends along a linear axis and contributes to the process of heart jogging.", Added definition dbxref GOC:mtg_heart to GO:0003304, Created link GO:0003304 -OBO_REL:is_a-> GO:0060571, Created link GO:0003304 -part_of-> GO:0003146, Assigned namespace "biological_process" to GO:0003304] * Changed name of GO:0003304 from "null" to "myocardial epithelial involution involved in heart jogging" * Set definition of GO:0003304 to "The morphogenetic process by which the myocardium bends along a linear axis and contributes to the process of heart jogging." * Added definition dbxref GOC:mtg_heart to GO:0003304 * Created link GO:0003304 -OBO_REL:is_a-> GO:0060571 * Created link GO:0003304 -part_of-> GO:0003146 * Assigned namespace "biological_process" to GO:0003304 * [Changed name of GO:0003305 from "null" to "cell migration involved in cardiac jogging", Set definition of GO:0003305 to "The orderly movement of cells of the myocardium from one site to another that will contribute to heart jogging.", Added definition dbxref GOC:mtg_heart to GO:0003305, Created link GO:0003305 -part_of-> GO:0003146, Created link GO:0003305 -OBO_REL:is_a-> GO:0060973, Assigned namespace "biological_process" to GO:0003305] * Changed name of GO:0003305 from "null" to "cell migration involved in cardiac jogging" * Set definition of GO:0003305 to "The orderly movement of cells of the myocardium from one site to another that will contribute to heart jogging." * Added definition dbxref GOC:mtg_heart to GO:0003305 * Created link GO:0003305 -part_of-> GO:0003146 * Created link GO:0003305 -OBO_REL:is_a-> GO:0060973 * Assigned namespace "biological_process" to GO:0003305 * [Changed name of GO:0003306 from "null" to "Wnt receptor signaling pathway involved in coronary vasculature development", Set definition of GO:0003306 to "The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time.", Added definition dbxref GOC:mtg_heart to GO:0003306, Created link GO:0003306 -OBO_REL:is_a-> GO:0060070, Created link GO:0003306 -part_of-> GO:0060976, Assigned namespace "biological_process" to GO:0003306] * Changed name of GO:0003306 from "null" to "Wnt receptor signaling pathway involved in coronary vasculature development" * Set definition of GO:0003306 to "The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time." * Added definition dbxref GOC:mtg_heart to GO:0003306 * Created link GO:0003306 -OBO_REL:is_a-> GO:0060070 * Created link GO:0003306 -part_of-> GO:0060976 * Assigned namespace "biological_process" to GO:0003306 * [Changed name of GO:0003307 from "null" to "regulation of Wnt receptor signaling pathway involved in coronary vasculature development", Set definition of GO:0003307 to "Any process that modulates the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time.", Added definition dbxref GOC:mtg_heart to GO:0003307, Created link GO:0003307 -OBO_REL:is_a-> GO:0060828, Created link GO:0003307 -regulates-> GO:0003306, Assigned namespace "biological_process" to GO:0003307] * Changed name of GO:0003307 from "null" to "regulation of Wnt receptor signaling pathway involved in coronary vasculature development" * Set definition of GO:0003307 to "Any process that modulates the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time." * Added definition dbxref GOC:mtg_heart to GO:0003307 * Created link GO:0003307 -OBO_REL:is_a-> GO:0060828 * Created link GO:0003307 -regulates-> GO:0003306 * Assigned namespace "biological_process" to GO:0003307 * [Changed name of GO:0003308 from "null" to "negative regulation of Wnt receptor signaling pathway involved in coronary vasculature development", Set definition of GO:0003308 to "Any process that decreases the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time.", Added definition dbxref GOC:mtg_heart to GO:0003308, Created link GO:0003308 -OBO_REL:is_a-> GO:0030178, Created link GO:0003308 -OBO_REL:is_a-> GO:0003307, Created link GO:0003308 -negatively_regulates-> GO:0003306, Assigned namespace "biological_process" to GO:0003308] * Changed name of GO:0003308 from "null" to "negative regulation of Wnt receptor signaling pathway involved in coronary vasculature development" * Set definition of GO:0003308 to "Any process that decreases the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time." * Added definition dbxref GOC:mtg_heart to GO:0003308 * Created link GO:0003308 -OBO_REL:is_a-> GO:0030178 * Created link GO:0003308 -OBO_REL:is_a-> GO:0003307 * Created link GO:0003308 -negatively_regulates-> GO:0003306 * Assigned namespace "biological_process" to GO:0003308 * [Changed name of GO:0044199 from "null" to "host cell nuclear envelope", Set definition of GO:0044199 to "The double lipid bilayer enclosing the host nucleus and separating its contents from the rest of the host cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).", Added definition dbxref GOC:jl to GO:0044199, Added GO:0044199 to category gosubset_prok, Created link GO:0044199 -OBO_REL:is_a-> GO:0044094, Created link GO:0044199 -part_of-> GO:0033645, Assigned namespace "cellular_component" to GO:0044199] * Changed name of GO:0044199 from "null" to "host cell nuclear envelope" * Set definition of GO:0044199 to "The double lipid bilayer enclosing the host nucleus and separating its contents from the rest of the host cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space)." * Added definition dbxref GOC:jl to GO:0044199 * Added GO:0044199 to category gosubset_prok * Created link GO:0044199 -OBO_REL:is_a-> GO:0044094 * Created link GO:0044199 -part_of-> GO:0033645 * Assigned namespace "cellular_component" to GO:0044199 * [Changed name of GO:0044200 from "null" to "host cell nuclear membrane", Set definition of GO:0044200 to "Either of the lipid bilayers that surround the host nucleus and form the nuclear envelope; excludes the intermembrane space.", Added definition dbxref GOC:jl to GO:0044200, Added GO:0044200 to category gosubset_prok, Created link GO:0044200 -OBO_REL:is_a-> GO:0033644, Created link GO:0044200 -part_of-> GO:0044199, Assigned namespace "cellular_component" to GO:0044200] * Changed name of GO:0044200 from "null" to "host cell nuclear membrane" * Set definition of GO:0044200 to "Either of the lipid bilayers that surround the host nucleus and form the nuclear envelope; excludes the intermembrane space." * Added definition dbxref GOC:jl to GO:0044200 * Added GO:0044200 to category gosubset_prok * Created link GO:0044200 -OBO_REL:is_a-> GO:0033644 * Created link GO:0044200 -part_of-> GO:0044199 * Assigned namespace "cellular_component" to GO:0044200 * [Changed name of GO:0044201 from "null" to "host cell nuclear inner membrane", Set definition of GO:0044201 to "The inner, i.e. lumen-facing, lipid bilayer of the host nuclear envelope.", Added definition dbxref GOC:jl to GO:0044201, Added GO:0044201 to category gosubset_prok, Created link GO:0044201 -OBO_REL:is_a-> GO:0044200, Assigned namespace "cellular_component" to GO:0044201] * Changed name of GO:0044201 from "null" to "host cell nuclear inner membrane" * Set definition of GO:0044201 to "The inner, i.e. lumen-facing, lipid bilayer of the host nuclear envelope." * Added definition dbxref GOC:jl to GO:0044201 * Added GO:0044201 to category gosubset_prok * Created link GO:0044201 -OBO_REL:is_a-> GO:0044200 * Assigned namespace "cellular_component" to GO:0044201 * [Changed name of GO:0044202 from "null" to "host cell nuclear outer membrane", Set definition of GO:0044202 to "The outer, i.e. cytoplasm-facing, lipid bilayer of the host nuclear envelope; continuous with the endoplasmic reticulum of the host cell and sometimes studded with ribosomes.", Added definition dbxref GOC:jl to GO:0044202, Added GO:0044202 to category gosubset_prok, Created link GO:0044202 -OBO_REL:is_a-> GO:0044200, Assigned namespace "cellular_component" to GO:0044202] * Changed name of GO:0044202 from "null" to "host cell nuclear outer membrane" * Set definition of GO:0044202 to "The outer, i.e. cytoplasm-facing, lipid bilayer of the host nuclear envelope; continuous with the endoplasmic reticulum of the host cell and sometimes studded with ribosomes." * Added definition dbxref GOC:jl to GO:0044202 * Added GO:0044202 to category gosubset_prok * Created link GO:0044202 -OBO_REL:is_a-> GO:0044200 * Assigned namespace "cellular_component" to GO:0044202 * [Changed name of GO:0044203 from "null" to "host cell nuclear lamina", Set definition of GO:0044203 to "The fibrous, electron-dense layer lying on the nucleoplasmic side of the inner membrane of a host cell nucleus, composed of lamin filaments.", Added definition dbxref GOC:jl to GO:0044203, Added GO:0044203 to category gosubset_prok, Created link GO:0044203 -part_of-> GO:0044201, Created link GO:0044203 -OBO_REL:is_a-> GO:0044094, Assigned namespace "cellular_component" to GO:0044203] * Changed name of GO:0044203 from "null" to "host cell nuclear lamina" * Set definition of GO:0044203 to "The fibrous, electron-dense layer lying on the nucleoplasmic side of the inner membrane of a host cell nucleus, composed of lamin filaments." * Added definition dbxref GOC:jl to GO:0044203 * Added GO:0044203 to category gosubset_prok * Created link GO:0044203 -part_of-> GO:0044201 * Created link GO:0044203 -OBO_REL:is_a-> GO:0044094 * Assigned namespace "cellular_component" to GO:0044203 * [Changed name of GO:0044204 from "null" to "host cell nuclear matrix", Set definition of GO:0044204 to "The dense fibrillar network lying on the inner side of the host nuclear membrane.", Added definition dbxref GOC:jl to GO:0044204, Added GO:0044204 to category gosubset_prok, Created link GO:0044204 -OBO_REL:is_a-> GO:0044094, Assigned namespace "cellular_component" to GO:0044204] * Changed name of GO:0044204 from "null" to "host cell nuclear matrix" * Set definition of GO:0044204 to "The dense fibrillar network lying on the inner side of the host nuclear membrane." * Added definition dbxref GOC:jl to GO:0044204 * Added GO:0044204 to category gosubset_prok * Created link GO:0044204 -OBO_REL:is_a-> GO:0044094 * Assigned namespace "cellular_component" to GO:0044204 * [Changed name of GO:0044205 from "null" to "'de novo' UMP biosynthetic process", Set definition of GO:0044205 to "The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroortate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.", Added definition dbxref GOC:ed to GO:0044205, Added definition dbxref GOC:jl to GO:0044205, Added synonym "'de novo' UMP biosynthesis" to GO:0044205, Changed synonym scope of GO:0044205 from "Related" to "Exact", Created link GO:0044205 -OBO_REL:is_a-> GO:0006222, Assigned namespace "biological_process" to GO:0044205] * Changed name of GO:0044205 from "null" to "'de novo' UMP biosynthetic process" * Set definition of GO:0044205 to "The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroortate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen." * Added definition dbxref GOC:ed to GO:0044205 * Added definition dbxref GOC:jl to GO:0044205 * Added synonym "'de novo' UMP biosynthesis" to GO:0044205 * Changed synonym scope of GO:0044205 from "Related" to "Exact" * Created link GO:0044205 -OBO_REL:is_a-> GO:0006222 * Assigned namespace "biological_process" to GO:0044205 * [Changed name of GO:0044206 from "null" to "UMP salvage", Set definition of GO:0044206 to "Any process which produces UMP, uridine monophosphate, from derivatives of it (e.g. cytidine, uridine, cytosine) without de novo synthesis.", Added definition dbxref GOC:ed to GO:0044206, Added definition dbxref PMID:15096496 to GO:0044206, Added synonym "UMP biosynthesis via nucleoside salvage pathway" to GO:0044206, Changed synonym scope of GO:0044206 from "Related" to "Exact", Added synonym "UMP biosynthetic process via nucleoside salvage pathway" to GO:0044206, Changed synonym scope of GO:0044206 from "Related" to "Exact", Created link GO:0044206 -OBO_REL:is_a-> GO:0010138, Created link GO:0044206 -OBO_REL:is_a-> GO:0006222, Assigned namespace "biological_process" to GO:0044206] * Changed name of GO:0044206 from "null" to "UMP salvage" * Set definition of GO:0044206 to "Any process which produces UMP, uridine monophosphate, from derivatives of it (e.g. cytidine, uridine, cytosine) without de novo synthesis." * Added definition dbxref GOC:ed to GO:0044206 * Added definition dbxref PMID:15096496 to GO:0044206 * Added synonym "UMP biosynthesis via nucleoside salvage pathway" to GO:0044206 * Changed synonym scope of GO:0044206 from "Related" to "Exact" * Added synonym "UMP biosynthetic process via nucleoside salvage pathway" to GO:0044206 * Changed synonym scope of GO:0044206 from "Related" to "Exact" * Created link GO:0044206 -OBO_REL:is_a-> GO:0010138 * Created link GO:0044206 -OBO_REL:is_a-> GO:0006222 * Assigned namespace "biological_process" to GO:0044206 * [Changed name of GO:0044207 from "null" to "translation initiation ternary complex", Set definition of GO:0044207 to "A complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2 (either eIF2 in eukaryotes, or IF2 in prokaryotes). In prokaryotes, fMet-tRNA (initiator) is used rather than Met-tRNA (initiator).", Added definition dbxref GOC:jl to GO:0044207, Added synonym "Met-tRNA/eIF2.GTP ternary complex" to GO:0044207, Changed synonym scope of GO:0044207 from "Related" to "Narrow", Added synonym "translation initiation (ternary) complex" to GO:0044207, Changed synonym scope of GO:0044207 from "Related" to "Exact", Created link GO:0044207 -OBO_REL:is_a-> GO:0044444, Created link GO:0044207 -OBO_REL:is_a-> GO:0030529, Assigned namespace "cellular_component" to GO:0044207] * Changed name of GO:0044207 from "null" to "translation initiation ternary complex" * Set definition of GO:0044207 to "A complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2 (either eIF2 in eukaryotes, or IF2 in prokaryotes). In prokaryotes, fMet-tRNA (initiator) is used rather than Met-tRNA (initiator)." * Added definition dbxref GOC:jl to GO:0044207 * Added synonym "Met-tRNA/eIF2.GTP ternary complex" to GO:0044207 * Changed synonym scope of GO:0044207 from "Related" to "Narrow" * Added synonym "translation initiation (ternary) complex" to GO:0044207 * Changed synonym scope of GO:0044207 from "Related" to "Exact" * Created link GO:0044207 -OBO_REL:is_a-> GO:0044444 * Created link GO:0044207 -OBO_REL:is_a-> GO:0030529 * Assigned namespace "cellular_component" to GO:0044207 * [Changed name of GO:0044208 from "null" to "'de novo' AMP biosynthetic process", Set definition of GO:0044208 to "The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP).", Added definition dbxref GOC:ed to GO:0044208, Added definition dbxref PMID:10888601 to GO:0044208, Created link GO:0044208 -OBO_REL:is_a-> GO:0006167, Assigned namespace "biological_process" to GO:0044208] * Changed name of GO:0044208 from "null" to "'de novo' AMP biosynthetic process" * Set definition of GO:0044208 to "The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP)." * Added definition dbxref GOC:ed to GO:0044208 * Added definition dbxref PMID:10888601 to GO:0044208 * Created link GO:0044208 -OBO_REL:is_a-> GO:0006167 * Assigned namespace "biological_process" to GO:0044208 * [Changed name of GO:0044209 from "null" to "AMP salvage", Set definition of GO:0044209 to "The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from derivatives of it (either adenine, ADP or adenosine 3',5'-bisphosphate) without de novo synthesis.", Added definition dbxref GOC:ed to GO:0044209, Added definition dbxref GOC:jl to GO:0044209, Added definition dbxref PMID:8917457 to GO:0044209, Added definition dbxref PMID:9864350 to GO:0044209, Added synonym "adenosine monophosphate salvage" to GO:0044209, Changed synonym scope of GO:0044209 from "Related" to "Exact", Added synonym "AMP biosynthetic process via salvage pathway" to GO:0044209, Changed synonym scope of GO:0044209 from "Related" to "Exact", Created link GO:0044209 -OBO_REL:is_a-> GO:0006167, Created link GO:0044209 -OBO_REL:is_a-> GO:0032261, Assigned namespace "biological_process" to GO:0044209] * Changed name of GO:0044209 from "null" to "AMP salvage" * Set definition of GO:0044209 to "The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from derivatives of it (either adenine, ADP or adenosine 3',5'-bisphosphate) without de novo synthesis." * Added definition dbxref GOC:ed to GO:0044209 * Added definition dbxref GOC:jl to GO:0044209 * Added definition dbxref PMID:8917457 to GO:0044209 * Added definition dbxref PMID:9864350 to GO:0044209 * Added synonym "adenosine monophosphate salvage" to GO:0044209 * Changed synonym scope of GO:0044209 from "Related" to "Exact" * Added synonym "AMP biosynthetic process via salvage pathway" to GO:0044209 * Changed synonym scope of GO:0044209 from "Related" to "Exact" * Created link GO:0044209 -OBO_REL:is_a-> GO:0006167 * Created link GO:0044209 -OBO_REL:is_a-> GO:0032261 * Assigned namespace "biological_process" to GO:0044209 * [Changed name of GO:0044210 from "null" to "'de novo' CTP biosynthetic process", Set definition of GO:0044210 to "The chemical reactions and pathways resulting in the formation of cytidine 5'-triphosphate (CTP) from simpler components.", Added definition dbxref GOC:ed to GO:0044210, Added definition dbxref GOC:jl to GO:0044210, Added definition dbxref PMID:11912132 to GO:0044210, Added definition dbxref PMID:18439916 to GO:0044210, Added synonym "'de novo' cytidine 5'-triphosphate biosynthetic process" to GO:0044210, Changed synonym scope of GO:0044210 from "Related" to "Exact", Created link GO:0044210 -OBO_REL:is_a-> GO:0006241, Assigned namespace "biological_process" to GO:0044210] * Changed name of GO:0044210 from "null" to "'de novo' CTP biosynthetic process" * Set definition of GO:0044210 to "The chemical reactions and pathways resulting in the formation of cytidine 5'-triphosphate (CTP) from simpler components." * Added definition dbxref GOC:ed to GO:0044210 * Added definition dbxref GOC:jl to GO:0044210 * Added definition dbxref PMID:11912132 to GO:0044210 * Added definition dbxref PMID:18439916 to GO:0044210 * Added synonym "'de novo' cytidine 5'-triphosphate biosynthetic process" to GO:0044210 * Changed synonym scope of GO:0044210 from "Related" to "Exact" * Created link GO:0044210 -OBO_REL:is_a-> GO:0006241 * Assigned namespace "biological_process" to GO:0044210 * [Changed name of GO:0044211 from "null" to "CTP salvage", Set definition of GO:0044211 to "Any process which produces cytidine 5'-triphosphate (CTP) from derivatives of it, without de novo synthesis.", Added definition dbxref GOC:ed to GO:0044211, Added definition dbxref GOC:jl to GO:0044211, Added definition dbxref PMID:10501935 to GO:0044211, Added synonym "CTP biosynthetic process via salvage pathway" to GO:0044211, Changed synonym scope of GO:0044211 from "Related" to "Exact", Added synonym "cytidine 5'-triphosphate salvage" to GO:0044211, Changed synonym scope of GO:0044211 from "Related" to "Exact", Created link GO:0044211 -OBO_REL:is_a-> GO:0010138, Created link GO:0044211 -OBO_REL:is_a-> GO:0006241, Assigned namespace "biological_process" to GO:0044211] * Changed name of GO:0044211 from "null" to "CTP salvage" * Set definition of GO:0044211 to "Any process which produces cytidine 5'-triphosphate (CTP) from derivatives of it, without de novo synthesis." * Added definition dbxref GOC:ed to GO:0044211 * Added definition dbxref GOC:jl to GO:0044211 * Added definition dbxref PMID:10501935 to GO:0044211 * Added synonym "CTP biosynthetic process via salvage pathway" to GO:0044211 * Changed synonym scope of GO:0044211 from "Related" to "Exact" * Added synonym "cytidine 5'-triphosphate salvage" to GO:0044211 * Changed synonym scope of GO:0044211 from "Related" to "Exact" * Created link GO:0044211 -OBO_REL:is_a-> GO:0010138 * Created link GO:0044211 -OBO_REL:is_a-> GO:0006241 * Assigned namespace "biological_process" to GO:0044211 * [Changed name of GO:0055129 from "null" to "L-proline biosynthetic process", Set definition of GO:0055129 to "The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.", Added definition dbxref GOC:ed to GO:0055129, Added synonym "pyrrolidine-2-carboxylic acid biosynthetic process" to GO:0055129, Changed synonym scope of GO:0055129 from "Related" to "Exact", Created link GO:0055129 -OBO_REL:is_a-> GO:0006561, Assigned namespace "biological_process" to GO:0055129] * Changed name of GO:0055129 from "null" to "L-proline biosynthetic process" * Set definition of GO:0055129 to "The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins." * Added definition dbxref GOC:ed to GO:0055129 * Added synonym "pyrrolidine-2-carboxylic acid biosynthetic process" to GO:0055129 * Changed synonym scope of GO:0055129 from "Related" to "Exact" * Created link GO:0055129 -OBO_REL:is_a-> GO:0006561 * Assigned namespace "biological_process" to GO:0055129 * [Changed name of GO:0055130 from "null" to "D-alanine catabolic process", Set definition of GO:0055130 to "The chemical reactions and pathways resulting in the breakdown of D-alanine, the D-enantiomer of the amino acid alanine.", Added definition dbxref GOC:ed to GO:0055130, Added synonym "(2R)-2-aminopropanoic acid catabolic process" to GO:0055130, Changed synonym scope of GO:0055130 from "Related" to "Exact", Created link GO:0055130 -OBO_REL:is_a-> GO:0046436, Created link GO:0055130 -OBO_REL:is_a-> GO:0019478, Assigned namespace "biological_process" to GO:0055130] * Changed name of GO:0055130 from "null" to "D-alanine catabolic process" * Set definition of GO:0055130 to "The chemical reactions and pathways resulting in the breakdown of D-alanine, the D-enantiomer of the amino acid alanine." * Added definition dbxref GOC:ed to GO:0055130 * Added synonym "(2R)-2-aminopropanoic acid catabolic process" to GO:0055130 * Changed synonym scope of GO:0055130 from "Related" to "Exact" * Created link GO:0055130 -OBO_REL:is_a-> GO:0046436 * Created link GO:0055130 -OBO_REL:is_a-> GO:0019478 * Assigned namespace "biological_process" to GO:0055130 * [Changed name of GO:0055131 from "null" to "RING finger domain binding", Set definition of GO:0055131 to "Interacting selectively and non-covalently with the c3HC4 type zinc-finger domain of a protein. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid . Many proteins containing a RING finger play a key role in the ubiquitination pathway.", Added definition dbxref GOC:amm to GO:0055131, Created link GO:0055131 -OBO_REL:is_a-> GO:0019904, Assigned namespace "molecular_function" to GO:0055131] * Changed name of GO:0055131 from "null" to "RING finger domain binding" * Set definition of GO:0055131 to "Interacting selectively and non-covalently with the c3HC4 type zinc-finger domain of a protein. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid . Many proteins containing a RING finger play a key role in the ubiquitination pathway." * Added definition dbxref GOC:amm to GO:0055131 * Created link GO:0055131 -OBO_REL:is_a-> GO:0019904 * Assigned namespace "molecular_function" to GO:0055131 * Changed definition of GO:0000114 from "Any process that regulates transcription such that the target genes are transcribed as part of the G1 phase of the mitotic cell cycle." to "Any process that regulates transcription such that the target genes are transcribed as part of the G1 phase of the mitotic cell cycle." * Changed definition of GO:0000243 from "A spliceosomal complex that is formed by association of the U1 snRNP and the U2 snRNP auxiliary factor with the 5' and 3' splice sites, respectively." to "A spliceosomal complex that is formed by association of the U1 snRNP with the 5' splice site of an unspliced intron in an RNA transcript." * Deleted definition dbxref GOC:mah from GO:0000243 * Deleted definition dbxref PMID:19239890 from GO:0000243 * Deleted definition dbxref PMID:9159080 from GO:0000243 * Added definition dbxref ISBN:087969-589-7 to GO:0000243 * Added definition dbxref PMID:9150140 to GO:0000243 * Deleted GO:0001947 --OBO_REL:is_a--> GO:0003007 * Created link GO:0001947 -OBO_REL:is_a-> GO:0035239 * Created link GO:0001947 -part_of-> GO:0003007 * Created link GO:0003143 -part_of-> GO:0003007 * Deleted GO:0003146 --OBO_REL:is_a--> GO:0003007 * Created link GO:0003146 -OBO_REL:is_a-> GO:0035239 * Created link GO:0003146 -part_of-> GO:0003007 * Added general dbxref KEGG:R01083 to GO:0004018 * Deleted GO:0006166 --OBO_REL:is_a--> GO:0046128 * Created link GO:0006166 -OBO_REL:is_a-> GO:0046129 * Deleted GO:0006168 --OBO_REL:is_a--> GO:0046083 * Created link GO:0006168 -OBO_REL:is_a-> GO:0046084 * Deleted GO:0006169 --OBO_REL:is_a--> GO:0046085 * Created link GO:0006169 -OBO_REL:is_a-> GO:0046086 * Deleted GO:0006178 --OBO_REL:is_a--> GO:0046098 * Created link GO:0006178 -OBO_REL:is_a-> GO:0046099 * Deleted GO:0006179 --OBO_REL:is_a--> GO:0008617 * Created link GO:0006179 -OBO_REL:is_a-> GO:0046114 * Deleted GO:0006190 --OBO_REL:is_a--> GO:0046102 * Created link GO:0006190 -OBO_REL:is_a-> GO:0046103 * Created link GO:0006191 -OBO_REL:is_a-> GO:0046095 * Deleted GO:0006236 --OBO_REL:is_a--> GO:0046087 * Created link GO:0006236 -OBO_REL:is_a-> GO:0046088 * Deleted GO:0006237 --OBO_REL:is_a--> GO:0046092 * Created link GO:0006237 -OBO_REL:is_a-> GO:0046093 * Deleted GO:0006238 --OBO_REL:is_a--> GO:0043097 * Deleted GO:0006238 --OBO_REL:is_a--> GO:0046035 * Created link GO:0006238 -OBO_REL:is_a-> GO:0009224 * Deleted GO:0006239 --OBO_REL:is_a--> GO:0046063 * Created link GO:0006239 -OBO_REL:is_a-> GO:0046064 * Deleted GO:0008655 --OBO_REL:is_a--> GO:0006206 * Created link GO:0008655 -OBO_REL:is_a-> GO:0034404 * Deleted GO:0009443 --OBO_REL:is_a--> GO:0008614 * Created link GO:0009443 -OBO_REL:is_a-> GO:0042823 * Created link GO:0009443 -OBO_REL:is_a-> GO:0008615 * Deleted GO:0010138 --OBO_REL:is_a--> GO:0009218 * Created link GO:0010138 -OBO_REL:is_a-> GO:0009220 * Deleted GO:0010139 --OBO_REL:is_a--> GO:0009219 * Created link GO:0010139 -OBO_REL:is_a-> GO:0009221 * Deleted GO:0010611 --regulates--> GO:0014898 * Created link GO:0010611 -regulates-> GO:0003300 * Deleted GO:0010613 --positively_regulates--> GO:0014898 * Created link GO:0010613 -positively_regulates-> GO:0003300 * Deleted GO:0010614 --negatively_regulates--> GO:0014898 * Created link GO:0010614 -negatively_regulates-> GO:0003300 * Deleted GO:0014896 --OBO_REL:is_a--> GO:0043500 * Created link GO:0014896 -OBO_REL:is_a-> GO:0003012 * Changed name of GO:0014898 from "cardiac muscle hypertrophy" to "cardiac muscle hypertrophy in response to stress" * Changed definition of GO:0014898 from "The enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division. In the case of cardiac muscle cells this happens due to regular and increasing aerobic exercise." to "The enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division." * Deleted GO:0014898 --OBO_REL:is_a--> GO:0014897 * Created link GO:0014898 -OBO_REL:is_a-> GO:0003299 * Created link GO:0014898 -OBO_REL:is_a-> GO:0003300 * Deleted GO:0019358 --OBO_REL:is_a--> GO:0046497 * Created link GO:0019358 -OBO_REL:is_a-> GO:0019357 * Deleted GO:0019365 --OBO_REL:is_a--> GO:0019362 * Created link GO:0019365 -OBO_REL:is_a-> GO:0019363 * Created link GO:0019430 -OBO_REL:is_a-> GO:0000303 * Deleted GO:0019492 --OBO_REL:is_a--> GO:0006560 * Created link GO:0019492 -OBO_REL:is_a-> GO:0006561 * Deleted GO:0019509 --OBO_REL:is_a--> GO:0006555 * Created link GO:0019509 -OBO_REL:is_a-> GO:0009086 * Deleted GO:0032261 --OBO_REL:is_a--> GO:0006163 * Created link GO:0032261 -OBO_REL:is_a-> GO:0006164 * Deleted GO:0032262 --OBO_REL:is_a--> GO:0006220 * Created link GO:0032262 -OBO_REL:is_a-> GO:0006221 * Deleted GO:0032263 --OBO_REL:is_a--> GO:0006166 * Deleted GO:0032263 --OBO_REL:is_a--> GO:0046037 * Created link GO:0032263 -OBO_REL:is_a-> GO:0006177 * Deleted GO:0032264 --OBO_REL:is_a--> GO:0046040 * Created link GO:0032264 -OBO_REL:is_a-> GO:0006188 * Deleted GO:0032265 --OBO_REL:is_a--> GO:0009167 * Created link GO:0032265 -OBO_REL:is_a-> GO:0009168 * Deleted GO:0033307 --OBO_REL:is_a--> GO:0033306 * Created link GO:0033307 -OBO_REL:is_a-> GO:0033520 * Deleted GO:0042352 --OBO_REL:is_a--> GO:0046368 * Created link GO:0042352 -OBO_REL:is_a-> GO:0042350 * Deleted GO:0043094 --OBO_REL:is_a--> GO:0044237 * Created link GO:0043094 -OBO_REL:is_a-> GO:0044249 * Deleted GO:0043096 --OBO_REL:is_a--> GO:0006144 * Created link GO:0043096 -OBO_REL:is_a-> GO:0009113 * Deleted GO:0043097 --OBO_REL:is_a--> GO:0006213 * Created link GO:0043097 -OBO_REL:is_a-> GO:0046134 * Deleted GO:0043098 --OBO_REL:is_a--> GO:0046122 * Created link GO:0043098 -OBO_REL:is_a-> GO:0046123 * Deleted GO:0043099 --OBO_REL:is_a--> GO:0046125 * Created link GO:0043099 -OBO_REL:is_a-> GO:0046126 * Deleted GO:0043101 --OBO_REL:is_a--> GO:0046483 * Deleted GO:0043101 --OBO_REL:is_a--> GO:0006139 * Created link GO:0043101 -OBO_REL:is_a-> GO:0018130 * Created link GO:0043101 -OBO_REL:is_a-> GO:0034404 * Deleted GO:0043102 --OBO_REL:is_a--> GO:0006520 * Created link GO:0043102 -OBO_REL:is_a-> GO:0008652 * Deleted GO:0043103 --OBO_REL:is_a--> GO:0046100 * Created link GO:0043103 -OBO_REL:is_a-> GO:0046101 * Deleted GO:0043173 --OBO_REL:is_a--> GO:0009117 * Created link GO:0043173 -OBO_REL:is_a-> GO:0009165 * Deleted GO:0043174 --OBO_REL:is_a--> GO:0009116 * Created link GO:0043174 -OBO_REL:is_a-> GO:0009163 * Changed definition of GO:0044192 from "The inner, i.e. lumen-facing, lipid bilayer of the host cell mitochondrial envelope. It is highly folded to form cristae." to "The inner, i.e. lumen-facing, lipid bilayer of the host cell mitochondrial envelope. It is highly folded to form cristae." * Changed definition of GO:0044193 from "The outer, i.e. cytoplasm-facing, lipid bilayer of the host cell mitochondrial envelope." to "The outer, i.e. cytoplasm-facing, lipid bilayer of the host cell mitochondrial envelope." * Deleted general dbxref MetaCyc:AMPSYN-RXN from GO:0070626 * Added general dbxref KEGG:R04559 to GO:0070626 * Added general dbxref MetaCyc:AICARSYN-RXN to GO:0070626 From gocvs at genome.stanford.edu Fri Oct 23 21:30:17 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 23 Oct 2009 21:30:17 -0700 Subject: [Go-diff] GO update 10/23/2009 Message-ID: <200910240430.n9O4UH86003542@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.853 by 1.856 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0090081 * Created object of type obo:TERM with id GO:0090082 * Created object of type obo:TERM with id GO:0090083 * Created object of type obo:TERM with id GO:0090084 * Created object of type obo:TERM with id GO:0090085 * Created object of type obo:TERM with id GO:0090086 * Created object of type obo:TERM with id GO:0090087 * Created object of type obo:TERM with id GO:0090088 * Created object of type obo:TERM with id GO:0090089 * [Changed name of GO:0090081 from "null" to "regulation of canonical Wnt receptor signaling pathway involved in heart induction", Set definition of GO:0090081 to "Any process that modulates the rate, frequency or extent of canonical Wnt receptor signaling pathway involved in heart induction. Canonical Wnt receptor signaling pathway involved in heart induction is the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes involved in heart induction.", Added definition dbxref GOC:mtg_heart to GO:0090081, Created link GO:0090081 -regulates-> GO:0003136, Created link GO:0090081 -OBO_REL:is_a-> GO:0060828, Assigned namespace "biological_process" to GO:0090081] * Changed name of GO:0090081 from "null" to "regulation of canonical Wnt receptor signaling pathway involved in heart induction" * Set definition of GO:0090081 to "Any process that modulates the rate, frequency or extent of canonical Wnt receptor signaling pathway involved in heart induction. Canonical Wnt receptor signaling pathway involved in heart induction is the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes involved in heart induction." * Added definition dbxref GOC:mtg_heart to GO:0090081 * Created link GO:0090081 -regulates-> GO:0003136 * Created link GO:0090081 -OBO_REL:is_a-> GO:0060828 * Assigned namespace "biological_process" to GO:0090081 * [Changed name of GO:0090082 from "null" to "negative regulation of canonical Wnt receptor signaling pathway involved in heart induction", Set definition of GO:0090082 to "Any process that decreases the rate, frequency or extent of canonical Wnt receptor signaling pathway involved in heart induction. Canonical Wnt receptor signaling pathway involved in heart induction is the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes involved in heart induction.", Added definition dbxref GOC:mtg_heart to GO:0090082, Created link GO:0090082 -OBO_REL:is_a-> GO:0003308, Created link GO:0090082 -OBO_REL:is_a-> GO:0090081, Created link GO:0090082 -negatively_regulates-> GO:0003136, Assigned namespace "biological_process" to GO:0090082] * Changed name of GO:0090082 from "null" to "negative regulation of canonical Wnt receptor signaling pathway involved in heart induction" * Set definition of GO:0090082 to "Any process that decreases the rate, frequency or extent of canonical Wnt receptor signaling pathway involved in heart induction. Canonical Wnt receptor signaling pathway involved in heart induction is the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes involved in heart induction." * Added definition dbxref GOC:mtg_heart to GO:0090082 * Created link GO:0090082 -OBO_REL:is_a-> GO:0003308 * Created link GO:0090082 -OBO_REL:is_a-> GO:0090081 * Created link GO:0090082 -negatively_regulates-> GO:0003136 * Assigned namespace "biological_process" to GO:0090082 * [Changed name of GO:0090083 from "null" to "regulation of inclusion body assembly", Set definition of GO:0090083 to "Any process that modulates the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body.", Added definition dbxref GOC:dph to GO:0090083, Added definition dbxref GOC:tb to GO:0090083, Created link GO:0090083 -OBO_REL:is_a-> GO:0044087, Created link GO:0090083 -regulates-> GO:0070841, Created link GO:0090083 -OBO_REL:is_a-> GO:0051128, Assigned namespace "biological_process" to GO:0090083] * Changed name of GO:0090083 from "null" to "regulation of inclusion body assembly" * Set definition of GO:0090083 to "Any process that modulates the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body." * Added definition dbxref GOC:dph to GO:0090083 * Added definition dbxref GOC:tb to GO:0090083 * Created link GO:0090083 -OBO_REL:is_a-> GO:0044087 * Created link GO:0090083 -regulates-> GO:0070841 * Created link GO:0090083 -OBO_REL:is_a-> GO:0051128 * Assigned namespace "biological_process" to GO:0090083 * [Changed name of GO:0090084 from "null" to "negative regulation of inclusion body assembly", Set definition of GO:0090084 to "Any process that decreases the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body.", Added definition dbxref GOC:dph to GO:0090084, Added definition dbxref GOC:tb to GO:0090084, Created link GO:0090084 -OBO_REL:is_a-> GO:0051129, Created link GO:0090084 -negatively_regulates-> GO:0070841, Created link GO:0090084 -OBO_REL:is_a-> GO:0090083, Assigned namespace "biological_process" to GO:0090084] * Changed name of GO:0090084 from "null" to "negative regulation of inclusion body assembly" * Set definition of GO:0090084 to "Any process that decreases the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body." * Added definition dbxref GOC:dph to GO:0090084 * Added definition dbxref GOC:tb to GO:0090084 * Created link GO:0090084 -OBO_REL:is_a-> GO:0051129 * Created link GO:0090084 -negatively_regulates-> GO:0070841 * Created link GO:0090084 -OBO_REL:is_a-> GO:0090083 * Assigned namespace "biological_process" to GO:0090084 * [Changed name of GO:0090085 from "null" to "regulation of protein deubiquitination", Set definition of GO:0090085 to "Any process that modulates the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein.", Added definition dbxref GOC:dph to GO:0090085, Added definition dbxref GOC:tb to GO:0090085, Created link GO:0090085 -OBO_REL:is_a-> GO:0031399, Created link GO:0090085 -regulates-> GO:0016579, Assigned namespace "biological_process" to GO:0090085] * Changed name of GO:0090085 from "null" to "regulation of protein deubiquitination" * Set definition of GO:0090085 to "Any process that modulates the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein." * Added definition dbxref GOC:dph to GO:0090085 * Added definition dbxref GOC:tb to GO:0090085 * Created link GO:0090085 -OBO_REL:is_a-> GO:0031399 * Created link GO:0090085 -regulates-> GO:0016579 * Assigned namespace "biological_process" to GO:0090085 * [Changed name of GO:0090086 from "null" to "negative regulation of protein deubiquitination", Set definition of GO:0090086 to "Any process that decreases the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein.", Added definition dbxref GOC:dph to GO:0090086, Added definition dbxref GOC:tb to GO:0090086, Created link GO:0090086 -OBO_REL:is_a-> GO:0090085, Created link GO:0090086 -OBO_REL:is_a-> GO:0031400, Created link GO:0090086 -negatively_regulates-> GO:0016579, Assigned namespace "biological_process" to GO:0090086] * Changed name of GO:0090086 from "null" to "negative regulation of protein deubiquitination" * Set definition of GO:0090086 to "Any process that decreases the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein." * Added definition dbxref GOC:dph to GO:0090086 * Added definition dbxref GOC:tb to GO:0090086 * Created link GO:0090086 -OBO_REL:is_a-> GO:0090085 * Created link GO:0090086 -OBO_REL:is_a-> GO:0031400 * Created link GO:0090086 -negatively_regulates-> GO:0016579 * Assigned namespace "biological_process" to GO:0090086 * [Changed name of GO:0090087 from "null" to "regulation of peptide transport", Set definition of GO:0090087 to "Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells.", Added definition dbxref GOC:dph to GO:0090087, Added definition dbxref GOC:tb to GO:0090087, Created link GO:0090087 -regulates-> GO:0015833, Created link GO:0090087 -OBO_REL:is_a-> GO:0051049, Assigned namespace "biological_process" to GO:0090087] * Changed name of GO:0090087 from "null" to "regulation of peptide transport" * Set definition of GO:0090087 to "Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells." * Added definition dbxref GOC:dph to GO:0090087 * Added definition dbxref GOC:tb to GO:0090087 * Created link GO:0090087 -regulates-> GO:0015833 * Created link GO:0090087 -OBO_REL:is_a-> GO:0051049 * Assigned namespace "biological_process" to GO:0090087 * [Changed name of GO:0090088 from "null" to "regulation of oligopeptide transport", Set definition of GO:0090088 to "Any process that modulates the frequency, rate or extent of the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.", Added definition dbxref GOC:dph to GO:0090088, Added definition dbxref GOC:tb to GO:0090088, Created link GO:0090088 -regulates-> GO:0006857, Created link GO:0090088 -OBO_REL:is_a-> GO:0090087, Assigned namespace "biological_process" to GO:0090088] * Changed name of GO:0090088 from "null" to "regulation of oligopeptide transport" * Set definition of GO:0090088 to "Any process that modulates the frequency, rate or extent of the directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages." * Added definition dbxref GOC:dph to GO:0090088 * Added definition dbxref GOC:tb to GO:0090088 * Created link GO:0090088 -regulates-> GO:0006857 * Created link GO:0090088 -OBO_REL:is_a-> GO:0090087 * Assigned namespace "biological_process" to GO:0090088 * [Changed name of GO:0090089 from "null" to "regulation of dipeptide transport", Set definition of GO:0090089 to "Any process that modulates the rate, frequency or extent of dipeptide transport. Dipeptide transport is the directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of, within or between cells.", Added definition dbxref GOC:dph to GO:0090089, Added definition dbxref GOC:tb to GO:0090089, Created link GO:0090089 -OBO_REL:is_a-> GO:0090088, Created link GO:0090089 -regulates-> GO:0042938, Assigned namespace "biological_process" to GO:0090089] * Changed name of GO:0090089 from "null" to "regulation of dipeptide transport" * Set definition of GO:0090089 to "Any process that modulates the rate, frequency or extent of dipeptide transport. Dipeptide transport is the directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of, within or between cells." * Added definition dbxref GOC:dph to GO:0090089 * Added definition dbxref GOC:tb to GO:0090089 * Created link GO:0090089 -OBO_REL:is_a-> GO:0090088 * Created link GO:0090089 -regulates-> GO:0042938 * Assigned namespace "biological_process" to GO:0090089 * Deleted definition dbxref ISBN:087969-589-7 from GO:0000243 * Added definition dbxref ISBN:0879695897 to GO:0000243 * Changed name of GO:0002151 from "G quadraplex RNA binding" to "G-quadruplex RNA binding" * Changed definition of GO:0002151 from "Interacting selectively and non-covalently with G-quadraplex RNA structures, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad." to "Interacting selectively and non-covalently with G-quadruplex RNA structures, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad." * Added general dbxref GOC:hjd to synonym G quartet binding of GO:0002151 * Added general dbxref GOC:hjd to synonym G quartet RNA binding of GO:0002151 * Added synonym "G quadruplex binding" to GO:0002151 * Added general dbxref GOC:mah to synonym G quadruplex binding of GO:0002151 * Changed synonym scope of GO:0002151 from "Related" to "Exact" * Added synonym "G-quartet binding" to GO:0002151 * Added general dbxref GOC:mah to synonym G-quartet binding of GO:0002151 * Changed synonym scope of GO:0002151 from "Related" to "Broad" * Created link GO:0003136 -OBO_REL:is_a-> GO:0003306 * Changed name of GO:0003306 from "Wnt receptor signaling pathway involved in coronary vasculature development" to "Wnt receptor signaling pathway involved in heart development" * Changed definition of GO:0003306 from "The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time." to "The series of molecular signals initiated by binding of Wnt protein to a receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the heart over time." * Deleted GO:0003306 --OBO_REL:is_a--> GO:0060070 * Created link GO:0003306 -OBO_REL:is_a-> GO:0016055 * Changed name of GO:0003307 from "regulation of Wnt receptor signaling pathway involved in coronary vasculature development" to "regulation of Wnt receptor signaling pathway involved in heart development" * Changed definition of GO:0003307 from "Any process that modulates the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time." to "Any process that modulates the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the heart over time." * Created link GO:0003307 -OBO_REL:is_a-> GO:0050793 * Created link GO:0003307 -OBO_REL:is_a-> GO:0051239 * Changed name of GO:0003308 from "negative regulation of Wnt receptor signaling pathway involved in coronary vasculature development" to "negative regulation of Wnt receptor signaling pathway involved in heart development" * Changed definition of GO:0003308 from "Any process that decreases the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the coronary vasculature over time." to "Any process that decreases the rate, frequency, or extent of the series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell, resulting a change in cell state that contributes to the progression of the heart over time." * Created link GO:0007250 -OBO_REL:is_a-> GO:0009966 * Created link GO:0010469 -OBO_REL:is_a-> GO:0009966 * Created link GO:0030710 -OBO_REL:is_a-> GO:0051239 * Created link GO:0043405 -OBO_REL:is_a-> GO:0009966 * Deleted definition dbxref GOC:ed from GO:0044205 * Added definition dbxref GOC:ecd to GO:0044205 * Deleted definition dbxref GOC:ed from GO:0044206 * Added definition dbxref GOC:ecd to GO:0044206 * Deleted definition dbxref GOC:ed from GO:0044208 * Added definition dbxref GOC:ecd to GO:0044208 * Deleted definition dbxref GOC:ed from GO:0044209 * Added definition dbxref GOC:ecd to GO:0044209 * Deleted definition dbxref GOC:ed from GO:0044210 * Added definition dbxref GOC:ecd to GO:0044210 * Deleted definition dbxref GOC:ed from GO:0044211 * Added definition dbxref GOC:ecd to GO:0044211 * Added general dbxref GOC:mah to synonym G-quartet binding of GO:0051880 * Changed synonym scope of GO:0051880 from "Exact" to "Broad" * Added synonym "G quadruplex DNA binding" to GO:0051880 * Added general dbxref GOC:mah to synonym G quadruplex DNA binding of GO:0051880 * Changed synonym scope of GO:0051880 from "Related" to "Exact" * Added synonym "G quartet binding" to GO:0051880 * Added general dbxref GOC:mah to synonym G quartet binding of GO:0051880 * Changed synonym scope of GO:0051880 from "Related" to "Broad" * Added synonym "G quartet DNA binding" to GO:0051880 * Added general dbxref GOC:mah to synonym G quartet DNA binding of GO:0051880 * Changed synonym scope of GO:0051880 from "Related" to "Exact" * Added synonym "G-quartet DNA binding" to GO:0051880 * Added general dbxref GOC:mah to synonym G-quartet DNA binding of GO:0051880 * Changed synonym scope of GO:0051880 from "Related" to "Exact" * Deleted definition dbxref http://www.ebi.ac.uk/interpro from GO:0055125 * Deleted definition dbxref http://www.yeastgenome.org from GO:0055126 * Deleted definition dbxref GOC:ed from GO:0055129 * Added definition dbxref GOC:ecd to GO:0055129 * Deleted definition dbxref GOC:ed from GO:0055130 * Added definition dbxref GOC:ecd to GO:0055130 From gocvs at genome.stanford.edu Mon Oct 26 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 26 Oct 2009 21:30:13 -0700 Subject: [Go-diff] GO update 10/26/2009 Message-ID: <200910270430.n9R4UDhm000680@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.856 by 1.859 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003309 * Created object of type obo:TERM with id GO:0003310 * Created object of type obo:TERM with id GO:0003311 * Created object of type obo:TERM with id GO:0003312 * Created object of type obo:TERM with id GO:0070979 * [Changed name of GO:0003309 from "null" to "pancreatic B cell differentiation", Set definition of GO:0003309 to "The process whereby relatively unspecialized cells acquire specialized structural and/or functional features of a pancreatic beta cell. Beta cells are cells of the pancreas that secrete insulin.", Added definition dbxref GOC:dph to GO:0003309, Added definition dbxref PMID:11076772 to GO:0003309, Created link GO:0003309 -OBO_REL:is_a-> GO:0030154, Created link GO:0003309 -part_of-> GO:0031018, Assigned namespace "biological_process" to GO:0003309] * Changed name of GO:0003309 from "null" to "pancreatic B cell differentiation" * Set definition of GO:0003309 to "The process whereby relatively unspecialized cells acquire specialized structural and/or functional features of a pancreatic beta cell. Beta cells are cells of the pancreas that secrete insulin." * Added definition dbxref GOC:dph to GO:0003309 * Added definition dbxref PMID:11076772 to GO:0003309 * Created link GO:0003309 -OBO_REL:is_a-> GO:0030154 * Created link GO:0003309 -part_of-> GO:0031018 * Assigned namespace "biological_process" to GO:0003309 * [Changed name of GO:0003310 from "null" to "pancreatic A cell differentiation", Set definition of GO:0003310 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features of a pancreatic A cell. A pancreatic A cell is a cell in the pancreas that secretes glucagon.", Added definition dbxref GOC:11076772 to GO:0003310, Added definition dbxref GOC:dph to GO:0003310, Added synonym "pancreatic alpha cell differentiation" to GO:0003310, Added general dbxref GOC:dph to synonym pancreatic alpha cell differentiation of GO:0003310, Changed synonym scope of GO:0003310 from "Related" to "Exact", Created link GO:0003310 -part_of-> GO:0031018, Created link GO:0003310 -OBO_REL:is_a-> GO:0030154, Assigned namespace "biological_process" to GO:0003310] * Changed name of GO:0003310 from "null" to "pancreatic A cell differentiation" * Set definition of GO:0003310 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features of a pancreatic A cell. A pancreatic A cell is a cell in the pancreas that secretes glucagon." * Added definition dbxref GOC:11076772 to GO:0003310 * Added definition dbxref GOC:dph to GO:0003310 * Added synonym "pancreatic alpha cell differentiation" to GO:0003310 * Added general dbxref GOC:dph to synonym pancreatic alpha cell differentiation of GO:0003310 * Changed synonym scope of GO:0003310 from "Related" to "Exact" * Created link GO:0003310 -part_of-> GO:0031018 * Created link GO:0003310 -OBO_REL:is_a-> GO:0030154 * Assigned namespace "biological_process" to GO:0003310 * [Changed name of GO:0003311 from "null" to "pancreatic D cell differentiation", Set definition of GO:0003311 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features that characterize a pancreatic delta cell. A delta cell is a cell of the pancreas that produces somatostatin.", Added definition dbxref GOC:11076772 to GO:0003311, Added definition dbxref GOC:dph to GO:0003311, Added synonym "pancreatic delta cell differentiation" to GO:0003311, Added general dbxref GOC:dph to synonym pancreatic delta cell differentiation of GO:0003311, Changed synonym scope of GO:0003311 from "Related" to "Exact", Created link GO:0003311 -OBO_REL:is_a-> GO:0030154, Created link GO:0003311 -part_of-> GO:0031018, Assigned namespace "biological_process" to GO:0003311] * Changed name of GO:0003311 from "null" to "pancreatic D cell differentiation" * Set definition of GO:0003311 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features that characterize a pancreatic delta cell. A delta cell is a cell of the pancreas that produces somatostatin." * Added definition dbxref GOC:11076772 to GO:0003311 * Added definition dbxref GOC:dph to GO:0003311 * Added synonym "pancreatic delta cell differentiation" to GO:0003311 * Added general dbxref GOC:dph to synonym pancreatic delta cell differentiation of GO:0003311 * Changed synonym scope of GO:0003311 from "Related" to "Exact" * Created link GO:0003311 -OBO_REL:is_a-> GO:0030154 * Created link GO:0003311 -part_of-> GO:0031018 * Assigned namespace "biological_process" to GO:0003311 * [Changed name of GO:0003312 from "null" to "pancreatic PP cell differentiation", Set definition of GO:0003312 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features of a pancreatic polypeptide-producing cell. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide.", Added definition dbxref GOC:dph to GO:0003312, Added definition dbxref PMID:11076772 to GO:0003312, Added synonym "pancreatic polypeptide-producing cell differentiation" to GO:0003312, Added general dbxref GOC:dph to synonym pancreatic polypeptide-producing cell differentiation of GO:0003312, Changed synonym scope of GO:0003312 from "Related" to "Exact", Created link GO:0003312 -OBO_REL:is_a-> GO:0030154, Created link GO:0003312 -part_of-> GO:0031018, Assigned namespace "biological_process" to GO:0003312] * Changed name of GO:0003312 from "null" to "pancreatic PP cell differentiation" * Set definition of GO:0003312 to "The process whereby relatively unspecialized cells acquire specialized structural and functional features of a pancreatic polypeptide-producing cell. A pancreatic polypeptide-producing cell is a cell in the pancreas that produces pancreatic polypeptide." * Added definition dbxref GOC:dph to GO:0003312 * Added definition dbxref PMID:11076772 to GO:0003312 * Added synonym "pancreatic polypeptide-producing cell differentiation" to GO:0003312 * Added general dbxref GOC:dph to synonym pancreatic polypeptide-producing cell differentiation of GO:0003312 * Changed synonym scope of GO:0003312 from "Related" to "Exact" * Created link GO:0003312 -OBO_REL:is_a-> GO:0030154 * Created link GO:0003312 -part_of-> GO:0031018 * Assigned namespace "biological_process" to GO:0003312 * [Changed name of GO:0070979 from "null" to "protein K11-linked ubiquitination", Set definition of GO:0070979 to "A protein ubiquitination process in which ubiquitin monomers are attached to a protein, and then ubiquitin polymers are formed by linkages between lysine residues at position 11 of the ubiquitin monomers. K11-linked polyubiquitination targets the substrate protein for degradation. The anaphase-promoting complex promotes the degradation of mitotic regulators by assembling K11-linked polyubiquitin chains.", Added definition dbxref GOC:jsg to GO:0070979, Added definition dbxref PMID:18485873 to GO:0070979, Created link GO:0070979 -OBO_REL:is_a-> GO:0016567, Assigned namespace "biological_process" to GO:0070979] * Changed name of GO:0070979 from "null" to "protein K11-linked ubiquitination" * Set definition of GO:0070979 to "A protein ubiquitination process in which ubiquitin monomers are attached to a protein, and then ubiquitin polymers are formed by linkages between lysine residues at position 11 of the ubiquitin monomers. K11-linked polyubiquitination targets the substrate protein for degradation. The anaphase-promoting complex promotes the degradation of mitotic regulators by assembling K11-linked polyubiquitin chains." * Added definition dbxref GOC:jsg to GO:0070979 * Added definition dbxref PMID:18485873 to GO:0070979 * Created link GO:0070979 -OBO_REL:is_a-> GO:0016567 * Assigned namespace "biological_process" to GO:0070979 * Created link GO:0001875 -part_of-> GO:0031663 * Changed definition of GO:0003295 from "The multiplication or reproduction of cells that contributes to the shaping of the artial ventricular junction." to "The multiplication or reproduction of cells that contributes to the shaping of the atrial ventricular junction." * Changed name of GO:0003300 from "cardiac muscle hypertropy" to "cardiac muscle hypertrophy" * Changed name of GO:0004042 from "amino-acid N-acetyltransferase activity" to "acetyl-CoA:L-glutamate N-acetyltransferase activity" * Deleted synonym "acetyl-CoA:L-glutamate N-acetyltransferase activity" from GO:0004042 * Added synonym "amino-acid N-acetyltransferase activity" to GO:0004042 * Added general dbxref EC:2.3.1.1 to synonym amino-acid N-acetyltransferase activity of GO:0004042 * Changed synonym scope of GO:0004042 from "Related" to "Broad" * Created link GO:0004946 -part_of-> GO:0031989 * Changed definition of GO:0004951 from "Combining with a cholecystokinin, a ny of a group of related neuropeptides secreted by the upper intestinal mucosa and also found in the central nervous system, to initiate a change in cell activity." to "Combining with a cholecystokinin, any of a group of related neuropeptides secreted by the upper intestinal mucosa and also found in the central nervous system, to initiate a change in cell activity." * Deleted GO:0004981 --OBO_REL:is_a--> GO:0008227 * Created link GO:0004995 -part_of-> GO:0007217 * Deleted GO:0007602 --part_of--> GO:0009583 * Deleted GO:0007602 --OBO_REL:is_a--> GO:0050908 * Created link GO:0007602 -OBO_REL:is_a-> GO:0051716 * Created link GO:0007602 -OBO_REL:is_a-> GO:0009583 * Deleted GO:0007603 --part_of--> GO:0009584 * Created link GO:0007603 -OBO_REL:is_a-> GO:0009584 * Deleted GO:0007604 --part_of--> GO:0009589 * Created link GO:0007604 -OBO_REL:is_a-> GO:0034644 * Created link GO:0007604 -OBO_REL:is_a-> GO:0009589 * Created link GO:0008020 -part_of-> GO:0009584 * Created link GO:0008188 -part_of-> GO:0007218 * Changed definition of GO:0008301 from "The function of causing local conformational micropolymorphism of DNA in which the original B-DNA structure is only distorted but not extensively modified." to "The function of causing local conformational micropolymorphism of DNA in which the original B-DNA structure is distorted but not extensively modified." * Created link GO:0008329 -part_of-> GO:0002221 * Deleted GO:0009443 --OBO_REL:is_a--> GO:0042822 * Created link GO:0009585 -part_of-> GO:0010017 * Deleted GO:0009586 --OBO_REL:is_a--> GO:0007602 * Created link GO:0009586 -OBO_REL:is_a-> GO:0050908 * Created link GO:0009586 -OBO_REL:is_a-> GO:0007603 * Changed definition of GO:0009785 from "The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 440nm and 500nm." to "The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm." * Created link GO:0009785 -OBO_REL:is_a-> GO:0009637 * Created link GO:0009882 -part_of-> GO:0009785 * Created link GO:0009883 -part_of-> GO:0009585 * Destroyed object GO:0010655 * added secondary id GO:0010655 to GO:0015057 * Changed definition of GO:0015057 from "Combining with thrombin to initiate a change in cell activity." to "Combining with thrombin to initiate a G-protein mediated change in cell activity. A G-protein is a signal transduction molecule that alternates between an inactive GDP-bound and an active GTP-bound state." * Added synonym "thrombin receptor activity, G-protein coupled" to GO:0015057 * Changed synonym scope of GO:0015057 from "Related" to "Exact" * Created link GO:0015057 -part_of-> GO:0070493 * Created link GO:0015057 -OBO_REL:is_a-> GO:0008528 * Created link GO:0031516 -part_of-> GO:0010018 * Created link GO:0031517 -part_of-> GO:0010161 * Deleted GO:0031585 --OBO_REL:is_a--> GO:0009966 * Created link GO:0031993 -part_of-> GO:0009583 * Changed definition of GO:0044205 from "The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroortate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen." to "The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen." * Created link GO:0060175 -part_of-> GO:0031547 * Changed definition of GO:0090083 from "Any process that modulates the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body." to "Any process that modulates the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body." * Changed definition of GO:0090085 from "Any process that modulates the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein." to "Any process that modulates the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein." * Changed definition of GO:0090086 from "Any process that decreases the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein." to "Any process that decreases the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin moieties from a protein." * Changed definition of GO:0090087 from "Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells." to "Any process that modulates the frequency, rate or extent of the directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of, within or between cells." * Changed definition of GO:0090089 from "Any process that modulates the rate, frequency or extent of dipeptide transport. Dipeptide transport is the directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of, within or between cells." to "Any process that modulates the rate, frequency or extent of dipeptide transport. Dipeptide transport is the directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of, within or between cells." From gocvs at genome.stanford.edu Tue Oct 27 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 27 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/27/2009 Message-ID: <200910280430.n9S4UC9h020686@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.859 by 1.861 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003313 * Created object of type obo:TERM with id GO:0003314 * Created object of type obo:TERM with id GO:0003315 * Created object of type obo:TERM with id GO:0003316 * Created object of type obo:TERM with id GO:0003317 * Created object of type obo:TERM with id GO:0003318 * Created object of type obo:TERM with id GO:0003319 * Created object of type obo:TERM with id GO:0003320 * Created object of type obo:TERM with id GO:0070980 * Created object of type obo:TERM with id GO:0070981 * Created object of type obo:TERM with id GO:0070982 * Created object of type obo:TERM with id GO:0070983 * Created object of type obo:TERM with id GO:0070984 * Created object of type obo:TERM with id GO:0070985 * [Changed name of GO:0003313 from "null" to "heart rudiment development", Set definition of GO:0003313 to "The progression of the heart rudiment over time, from its intitial formation to the mature structure. The heart rudiment is a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment will extend to form the heart tube.", Added definition dbxref GOC:mtg_heart to GO:0003313, Added synonym "heart cone development" to GO:0003313, Added general dbxref GOC:mtg_heart to synonym heart cone development of GO:0003313, Changed synonym scope of GO:0003313 from "Related" to "Exact", Created link GO:0003313 -OBO_REL:is_a-> GO:0060429, Created link GO:0003313 -part_of-> GO:0007507, Assigned namespace "biological_process" to GO:0003313] * Changed name of GO:0003313 from "null" to "heart rudiment development" * Set definition of GO:0003313 to "The progression of the heart rudiment over time, from its intitial formation to the mature structure. The heart rudiment is a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment will extend to form the heart tube." * Added definition dbxref GOC:mtg_heart to GO:0003313 * Added synonym "heart cone development" to GO:0003313 * Added general dbxref GOC:mtg_heart to synonym heart cone development of GO:0003313 * Changed synonym scope of GO:0003313 from "Related" to "Exact" * Created link GO:0003313 -OBO_REL:is_a-> GO:0060429 * Created link GO:0003313 -part_of-> GO:0007507 * Assigned namespace "biological_process" to GO:0003313 * [Changed name of GO:0003314 from "null" to "heart rudiment morphogenesis", Set definition of GO:0003314 to "The process by which the anatomical structures of the heart rudiment are generated and organized.", Added definition dbxref GOC:mtg_heart to GO:0003314, Added synonym "heart cone morphogenesis" to GO:0003314, Added general dbxref GOC:mtg_heart to synonym heart cone morphogenesis of GO:0003314, Changed synonym scope of GO:0003314 from "Related" to "Exact", Created link GO:0003314 -part_of-> GO:0003313, Created link GO:0003314 -OBO_REL:is_a-> GO:0002009, Assigned namespace "biological_process" to GO:0003314] * Changed name of GO:0003314 from "null" to "heart rudiment morphogenesis" * Set definition of GO:0003314 to "The process by which the anatomical structures of the heart rudiment are generated and organized." * Added definition dbxref GOC:mtg_heart to GO:0003314 * Added synonym "heart cone morphogenesis" to GO:0003314 * Added general dbxref GOC:mtg_heart to synonym heart cone morphogenesis of GO:0003314 * Changed synonym scope of GO:0003314 from "Related" to "Exact" * Created link GO:0003314 -part_of-> GO:0003313 * Created link GO:0003314 -OBO_REL:is_a-> GO:0002009 * Assigned namespace "biological_process" to GO:0003314 * [Changed name of GO:0003315 from "null" to "heart rudiment formation", Set definition of GO:0003315 to "The developmental process pertaining to the initial formation of the heart rudiment.", Added definition dbxref GOC:mtg_heart to GO:0003315, Added synonym "heart cone formation" to GO:0003315, Added general dbxref GOC:mtg_heart to synonym heart cone formation of GO:0003315, Changed synonym scope of GO:0003315 from "Related" to "Exact", Created link GO:0003315 -OBO_REL:is_a-> GO:0048646, Created link GO:0003315 -part_of-> GO:0003314, Assigned namespace "biological_process" to GO:0003315] * Changed name of GO:0003315 from "null" to "heart rudiment formation" * Set definition of GO:0003315 to "The developmental process pertaining to the initial formation of the heart rudiment." * Added definition dbxref GOC:mtg_heart to GO:0003315 * Added synonym "heart cone formation" to GO:0003315 * Added general dbxref GOC:mtg_heart to synonym heart cone formation of GO:0003315 * Changed synonym scope of GO:0003315 from "Related" to "Exact" * Created link GO:0003315 -OBO_REL:is_a-> GO:0048646 * Created link GO:0003315 -part_of-> GO:0003314 * Assigned namespace "biological_process" to GO:0003315 * [Changed name of GO:0003316 from "null" to "establishment of myocardial progenitor cell apical/basal polarity", Set definition of GO:0003316 to "The specification and formation of the apicobasal polarity of an myocardial progenitor cell that contributes to the formation of the heart rudiment.", Added definition dbxref GOC:mtg_heart to GO:0003316, Added synonym "myocardial progenitor epithelial polarization" to GO:0003316, Added general dbxref GOC:mtg_heart to synonym myocardial progenitor epithelial polarization of GO:0003316, Changed synonym scope of GO:0003316 from "Related" to "Exact", Created link GO:0003316 -OBO_REL:is_a-> GO:0045198, Created link GO:0003316 -part_of-> GO:0003315, Assigned namespace "biological_process" to GO:0003316] * Changed name of GO:0003316 from "null" to "establishment of myocardial progenitor cell apical/basal polarity" * Set definition of GO:0003316 to "The specification and formation of the apicobasal polarity of an myocardial progenitor cell that contributes to the formation of the heart rudiment." * Added definition dbxref GOC:mtg_heart to GO:0003316 * Added synonym "myocardial progenitor epithelial polarization" to GO:0003316 * Added general dbxref GOC:mtg_heart to synonym myocardial progenitor epithelial polarization of GO:0003316 * Changed synonym scope of GO:0003316 from "Related" to "Exact" * Created link GO:0003316 -OBO_REL:is_a-> GO:0045198 * Created link GO:0003316 -part_of-> GO:0003315 * Assigned namespace "biological_process" to GO:0003316 * [Changed name of GO:0003317 from "null" to "cardioblast cell midline fusion", Set definition of GO:0003317 to "The attachment of cardiac progenitor cells to one another that contributes to the formation of the heart rudiment.", Added definition dbxref GOC:mtg_heart to GO:0003317, Added synonym "cardiac progenitor cell midline fusion" to GO:0003317, Added general dbxref GOC:mtg_heart to synonym cardiac progenitor cell midline fusion of GO:0003317, Changed synonym scope of GO:0003317 from "Related" to "Exact", Created link GO:0003317 -part_of-> GO:0003315, Created link GO:0003317 -OBO_REL:is_a-> GO:0016337, Assigned namespace "biological_process" to GO:0003317] * Changed name of GO:0003317 from "null" to "cardioblast cell midline fusion" * Set definition of GO:0003317 to "The attachment of cardiac progenitor cells to one another that contributes to the formation of the heart rudiment." * Added definition dbxref GOC:mtg_heart to GO:0003317 * Added synonym "cardiac progenitor cell midline fusion" to GO:0003317 * Added general dbxref GOC:mtg_heart to synonym cardiac progenitor cell midline fusion of GO:0003317 * Changed synonym scope of GO:0003317 from "Related" to "Exact" * Created link GO:0003317 -part_of-> GO:0003315 * Created link GO:0003317 -OBO_REL:is_a-> GO:0016337 * Assigned namespace "biological_process" to GO:0003317 * [Changed name of GO:0003318 from "null" to "cell migration to the midline involved in heart development", Set definition of GO:0003318 to "The orderly movement of cells toward the midline that contributes to the progression of the heart over time.", Added definition dbxref GOC:mtg_heart to GO:0003318, Created link GO:0003318 -OBO_REL:is_a-> GO:0060973, Assigned namespace "biological_process" to GO:0003318] * Changed name of GO:0003318 from "null" to "cell migration to the midline involved in heart development" * Set definition of GO:0003318 to "The orderly movement of cells toward the midline that contributes to the progression of the heart over time." * Added definition dbxref GOC:mtg_heart to GO:0003318 * Created link GO:0003318 -OBO_REL:is_a-> GO:0060973 * Assigned namespace "biological_process" to GO:0003318 * [Changed name of GO:0003319 from "null" to "cardioblast migration to the midline involved in heart rudiment formation", Set definition of GO:0003319 to "The orderly movement of cardioblasts toward the midline that contributes to the initial appearance of the heart rudiment.", Added definition dbxref GOC:mtg_heart to GO:0003319, Created link GO:0003319 -part_of-> GO:0003315, Created link GO:0003319 -OBO_REL:is_a-> GO:0003318, Assigned namespace "biological_process" to GO:0003319] * Changed name of GO:0003319 from "null" to "cardioblast migration to the midline involved in heart rudiment formation" * Set definition of GO:0003319 to "The orderly movement of cardioblasts toward the midline that contributes to the initial appearance of the heart rudiment." * Added definition dbxref GOC:mtg_heart to GO:0003319 * Created link GO:0003319 -part_of-> GO:0003315 * Created link GO:0003319 -OBO_REL:is_a-> GO:0003318 * Assigned namespace "biological_process" to GO:0003319 * [Changed name of GO:0003320 from "null" to "heart rudiment involution", Set definition of GO:0003320 to "The inward folding of myocardial tissue derived from the right half of the heart rudiment that will form the future ventral part of the heart tube.", Added definition dbxref GOC:mtg_heart to GO:0003320, Created link GO:0003320 -OBO_REL:is_a-> GO:0003152, Assigned namespace "biological_process" to GO:0003320] * Changed name of GO:0003320 from "null" to "heart rudiment involution" * Set definition of GO:0003320 to "The inward folding of myocardial tissue derived from the right half of the heart rudiment that will form the future ventral part of the heart tube." * Added definition dbxref GOC:mtg_heart to GO:0003320 * Created link GO:0003320 -OBO_REL:is_a-> GO:0003152 * Assigned namespace "biological_process" to GO:0003320 * [Changed name of GO:0070980 from "null" to "biphenyl catabolic process", Set definition of GO:0070980 to "The chemical reactions and pathways resulting in the breakdown of biphenyl, a toxic aromatic hydrocarbon used as a heat transfer agent, as a fungistat in packaging citrus fruits and in plant disease control. Biphenyl can be chlorinated with 1-10 chlorine molecules to form polychlorinated biphenyls (PCBs).", Added definition dbxref ChEBI:17097 to GO:0070980, Added definition dbxref PMID:16310831 to GO:0070980, Added definition dbxref PMID:16339959 to GO:0070980, Added definition dbxref UniPathway:UPA00155 to GO:0070980, Added synonym "biphenyl breakdown" to GO:0070980, Added general dbxref GOC:mah to synonym biphenyl breakdown of GO:0070980, Changed synonym scope of GO:0070980 from "Related" to "Exact", Added synonym "biphenyl catabolism" to GO:0070980, Added general dbxref GOC:mah to synonym biphenyl catabolism of GO:0070980, Changed synonym scope of GO:0070980 from "Related" to "Exact", Added synonym "biphenyl degradation" to GO:0070980, Added general dbxref GOC:mah to synonym biphenyl degradation of GO:0070980, Changed synonym scope of GO:0070980 from "Related" to "Exact", Created link GO:0070980 -OBO_REL:is_a-> GO:0042178, Created link GO:0070980 -OBO_REL:is_a-> GO:0018879, Assigned namespace "biological_process" to GO:0070980] * Changed name of GO:0070980 from "null" to "biphenyl catabolic process" * Set definition of GO:0070980 to "The chemical reactions and pathways resulting in the breakdown of biphenyl, a toxic aromatic hydrocarbon used as a heat transfer agent, as a fungistat in packaging citrus fruits and in plant disease control. Biphenyl can be chlorinated with 1-10 chlorine molecules to form polychlorinated biphenyls (PCBs)." * Added definition dbxref ChEBI:17097 to GO:0070980 * Added definition dbxref PMID:16310831 to GO:0070980 * Added definition dbxref PMID:16339959 to GO:0070980 * Added definition dbxref UniPathway:UPA00155 to GO:0070980 * Added synonym "biphenyl breakdown" to GO:0070980 * Added general dbxref GOC:mah to synonym biphenyl breakdown of GO:0070980 * Changed synonym scope of GO:0070980 from "Related" to "Exact" * Added synonym "biphenyl catabolism" to GO:0070980 * Added general dbxref GOC:mah to synonym biphenyl catabolism of GO:0070980 * Changed synonym scope of GO:0070980 from "Related" to "Exact" * Added synonym "biphenyl degradation" to GO:0070980 * Added general dbxref GOC:mah to synonym biphenyl degradation of GO:0070980 * Changed synonym scope of GO:0070980 from "Related" to "Exact" * Created link GO:0070980 -OBO_REL:is_a-> GO:0042178 * Created link GO:0070980 -OBO_REL:is_a-> GO:0018879 * Assigned namespace "biological_process" to GO:0070980 * [Changed name of GO:0070981 from "null" to "L-asparagine biosynthetic process", Set definition of GO:0070981 to "The chemical reactions and pathways resulting in the formation of asparagine, (2S)-2-amino-3-carbamoylpropanoic acid.", Added definition dbxref ChEBI:17196 to GO:0070981, Added definition dbxref GOC:mah to GO:0070981, Added GO:0070981 to category gosubset_prok, Added synonym "L-asparagine anabolism" to GO:0070981, Added general dbxref GOC:mah to synonym L-asparagine anabolism of GO:0070981, Changed synonym scope of GO:0070981 from "Related" to "Exact", Added synonym "L-asparagine biosynthesis" to GO:0070981, Added general dbxref GOC:mah to synonym L-asparagine biosynthesis of GO:0070981, Changed synonym scope of GO:0070981 from "Related" to "Exact", Added synonym "L-asparagine formation" to GO:0070981, Added general dbxref GOC:mah to synonym L-asparagine formation of GO:0070981, Changed synonym scope of GO:0070981 from "Related" to "Exact", Added synonym "L-asparagine synthesis" to GO:0070981, Added general dbxref GOC:mah to synonym L-asparagine synthesis of GO:0070981, Changed synonym scope of GO:0070981 from "Related" to "Exact", Created link GO:0070981 -OBO_REL:is_a-> GO:0006529, Created link GO:0070981 -OBO_REL:is_a-> GO:0070982, Assigned namespace "biological_process" to GO:0070981] * Changed name of GO:0070981 from "null" to "L-asparagine biosynthetic process" * Set definition of GO:0070981 to "The chemical reactions and pathways resulting in the formation of asparagine, (2S)-2-amino-3-carbamoylpropanoic acid." * Added definition dbxref ChEBI:17196 to GO:0070981 * Added definition dbxref GOC:mah to GO:0070981 * Added GO:0070981 to category gosubset_prok * Added synonym "L-asparagine anabolism" to GO:0070981 * Added general dbxref GOC:mah to synonym L-asparagine anabolism of GO:0070981 * Changed synonym scope of GO:0070981 from "Related" to "Exact" * Added synonym "L-asparagine biosynthesis" to GO:0070981 * Added general dbxref GOC:mah to synonym L-asparagine biosynthesis of GO:0070981 * Changed synonym scope of GO:0070981 from "Related" to "Exact" * Added synonym "L-asparagine formation" to GO:0070981 * Added general dbxref GOC:mah to synonym L-asparagine formation of GO:0070981 * Changed synonym scope of GO:0070981 from "Related" to "Exact" * Added synonym "L-asparagine synthesis" to GO:0070981 * Added general dbxref GOC:mah to synonym L-asparagine synthesis of GO:0070981 * Changed synonym scope of GO:0070981 from "Related" to "Exact" * Created link GO:0070981 -OBO_REL:is_a-> GO:0006529 * Created link GO:0070981 -OBO_REL:is_a-> GO:0070982 * Assigned namespace "biological_process" to GO:0070981 * [Changed name of GO:0070982 from "null" to "L-asparagine metabolic process", Set definition of GO:0070982 to "The chemical reactions and pathways involving L-asparagine, (2S)-2-amino-3-carbamoylpropanoic acid.", Added definition dbxref ChEBI:17196 to GO:0070982, Added definition dbxref GOC:mah to GO:0070982, Added GO:0070982 to category gosubset_prok, Added synonym "L-asparagine metabolism" to GO:0070982, Added general dbxref GOC:mah to synonym L-asparagine metabolism of GO:0070982, Changed synonym scope of GO:0070982 from "Related" to "Exact", Created link GO:0070982 -OBO_REL:is_a-> GO:0006528, Assigned namespace "biological_process" to GO:0070982] * Changed name of GO:0070982 from "null" to "L-asparagine metabolic process" * Set definition of GO:0070982 to "The chemical reactions and pathways involving L-asparagine, (2S)-2-amino-3-carbamoylpropanoic acid." * Added definition dbxref ChEBI:17196 to GO:0070982 * Added definition dbxref GOC:mah to GO:0070982 * Added GO:0070982 to category gosubset_prok * Added synonym "L-asparagine metabolism" to GO:0070982 * Added general dbxref GOC:mah to synonym L-asparagine metabolism of GO:0070982 * Changed synonym scope of GO:0070982 from "Related" to "Exact" * Created link GO:0070982 -OBO_REL:is_a-> GO:0006528 * Assigned namespace "biological_process" to GO:0070982 * [Changed name of GO:0070983 from "null" to "dendrite guidance", Set definition of GO:0070983 to "The process by which the migration of a dendrite is directed to a specific target site in response to a combination of attractive and repulsive cues.", Added definition dbxref GOC:sart to GO:0070983, Added definition dbxref PMID:15046878 to GO:0070983, Added synonym "dendritic guidance" to GO:0070983, Added general dbxref GOC:sart to synonym dendritic guidance of GO:0070983, Changed synonym scope of GO:0070983 from "Related" to "Exact", Created link GO:0070983 -part_of-> GO:0048813, Created link GO:0070983 -OBO_REL:is_a-> GO:0006928, Assigned namespace "biological_process" to GO:0070983] * Changed name of GO:0070983 from "null" to "dendrite guidance" * Set definition of GO:0070983 to "The process by which the migration of a dendrite is directed to a specific target site in response to a combination of attractive and repulsive cues." * Added definition dbxref GOC:sart to GO:0070983 * Added definition dbxref PMID:15046878 to GO:0070983 * Added synonym "dendritic guidance" to GO:0070983 * Added general dbxref GOC:sart to synonym dendritic guidance of GO:0070983 * Changed synonym scope of GO:0070983 from "Related" to "Exact" * Created link GO:0070983 -part_of-> GO:0048813 * Created link GO:0070983 -OBO_REL:is_a-> GO:0006928 * Assigned namespace "biological_process" to GO:0070983 * [Changed name of GO:0070984 from "null" to "SET domain binding", Set definition of GO:0070984 to "Interacting selectively and non-covalently with a SET domain of a protein. SET domains are named after three Drosophila proteins that contain this domain: Su(var), E(z) and trithorax. SET domains are associated with histone lysine methylation.", Added definition dbxref GOC:sart to GO:0070984, Added definition dbxref Pfam:PF00856 to GO:0070984, Added definition dbxref PMID:12575990 to GO:0070984, Added synonym "SET binding" to GO:0070984, Added general dbxref GOC:sart to synonym SET binding of GO:0070984, Changed synonym scope of GO:0070984 from "Related" to "Exact", Created link GO:0070984 -OBO_REL:is_a-> GO:0019904, Assigned namespace "molecular_function" to GO:0070984] * Changed name of GO:0070984 from "null" to "SET domain binding" * Set definition of GO:0070984 to "Interacting selectively and non-covalently with a SET domain of a protein. SET domains are named after three Drosophila proteins that contain this domain: Su(var), E(z) and trithorax. SET domains are associated with histone lysine methylation." * Added definition dbxref GOC:sart to GO:0070984 * Added definition dbxref Pfam:PF00856 to GO:0070984 * Added definition dbxref PMID:12575990 to GO:0070984 * Added synonym "SET binding" to GO:0070984 * Added general dbxref GOC:sart to synonym SET binding of GO:0070984 * Changed synonym scope of GO:0070984 from "Related" to "Exact" * Created link GO:0070984 -OBO_REL:is_a-> GO:0019904 * Assigned namespace "molecular_function" to GO:0070984 * [Changed name of GO:0070985 from "null" to "TFIIK complex", Set definition of GO:0070985 to "A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces, TFIIK contains Ccl1p, Tfb3p and Kin2p.", Added definition dbxref GOC:mah to GO:0070985, Added definition dbxref PMID:19818408 to GO:0070985, Created link GO:0070985 -OBO_REL:is_a-> GO:0005667, Created link GO:0070985 -part_of-> GO:0005675, Assigned namespace "cellular_component" to GO:0070985] * Changed name of GO:0070985 from "null" to "TFIIK complex" * Set definition of GO:0070985 to "A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces, TFIIK contains Ccl1p, Tfb3p and Kin2p." * Added definition dbxref GOC:mah to GO:0070985 * Added definition dbxref PMID:19818408 to GO:0070985 * Created link GO:0070985 -OBO_REL:is_a-> GO:0005667 * Created link GO:0070985 -part_of-> GO:0005675 * Assigned namespace "cellular_component" to GO:0070985 * Created link GO:0000438 -part_of-> GO:0070985 * Changed name of GO:0003162 from "AV node development" to "atrioventricular node development" * Changed definition of GO:0003162 from "The process whose specific outcome is the progression of the AV node over time, from its formation to the mature structure. The AV node is part of the cardiac conduction system that controls the timing of ventricle contraction by receiving electrical signals from the SA node and relaying them to the His-Purkinje system." to "The process whose specific outcome is the progression of the atrioventricular (AV) node over time, from its formation to the mature structure. The AV node is part of the cardiac conduction system that controls the timing of ventricle contraction by receiving electrical signals from the sinoatrial (SA) node and relaying them to the His-Purkinje system." * Deleted synonym "atrioventricular node development" from GO:0003162 * Added synonym "AV node development" to GO:0003162 * Added general dbxref GOC:mtg_heart to synonym AV node development of GO:0003162 * Changed synonym scope of GO:0003162 from "Related" to "Exact" * Changed name of GO:0003163 from "SA node development" to "sinoatrial node development" * Changed definition of GO:0003163 from "The process whose specific outcome is the progression of the SA node over time, from its formation to the mature structure. The SA node is part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node." to "The process whose specific outcome is the progression of the sinoatrial (SA) node over time, from its formation to the mature structure. The SA node is part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node." * Deleted synonym "sinoatrial node development" from GO:0003163 * Added synonym "SA node development" to GO:0003163 * Added general dbxref GOC:mtg_heart to synonym SA node development of GO:0003163 * Changed synonym scope of GO:0003163 from "Related" to "Exact" * Added synonym "AV valve development" to GO:0003171 * Added general dbxref GOC:mah to synonym AV valve development of GO:0003171 * Changed synonym scope of GO:0003171 from "Related" to "Exact" * Added synonym "SA valve development" to GO:0003172 * Added general dbxref GOC:mah to synonym SA valve development of GO:0003172 * Changed synonym scope of GO:0003172 from "Related" to "Exact" * Added synonym "AV valve morphogenesis" to GO:0003181 * Added general dbxref GOC:mah to synonym AV valve morphogenesis of GO:0003181 * Changed synonym scope of GO:0003181 from "Related" to "Exact" * Added synonym "SA valve morphogenesis" to GO:0003185 * Added general dbxref GOC:mah to synonym SA valve morphogenesis of GO:0003185 * Changed synonym scope of GO:0003185 from "Related" to "Exact" * Added synonym "AV valve formation" to GO:0003190 * Added general dbxref GOC:mah to synonym AV valve formation of GO:0003190 * Changed synonym scope of GO:0003190 from "Related" to "Exact" * Added synonym "SA valve formation" to GO:0003194 * Added general dbxref GOC:mah to synonym SA valve formation of GO:0003194 * Changed synonym scope of GO:0003194 from "Related" to "Exact" * Changed name of GO:0003261 from "cardiac muscle progenitor cell migration to the midline" to "cardiac muscle progenitor cell migration to the midline involved in heart field formation" * Changed name of GO:0003262 from "endocardial progenitor cell migration to the midline" to "endocardial progenitor cell migration to the midline involved in heart field formation" * Changed definition of GO:0003294 from "The tissue remodeling process that contributes to the process by which the connection between an atrium and a ventricle of the heart are connected." to "The tissue remodeling process that contributes to the process by which the connection between an atrium and a ventricle of the heart is reorganized as part of its maturation." * Changed name of GO:0003296 from "apoptosis involved in atrial ventricular junction remodelling" to "apoptosis involved in atrial ventricular junction remodeling" * Changed definition of GO:0003297 from "The morphogenic process by which the aorta inserts between the atrioventricular valves that contributes to the shaping of the heart." to "The morphogenetic process by which the aorta inserts between the atrioventricular valves that contributes to the shaping of the heart." * Changed definition of GO:0003300 from "The enlargement or overgrowth of all or part of the heart due to an increase in size of cardiac muscle cells without cell division." to "The enlargement or overgrowth of all or part of the heart muscle due to an increase in size of cardiac muscle cells without cell division." * Changed definition of GO:0003301 from "The enlargement or overgrowth of all or part of the heart due to an increase in size of cardiac muscle cells without cell division. This process contributes to the developmental growth of the heart." to "The enlargement or overgrowth of all or part of the heart muscle due to an increase in size of cardiac muscle cells without cell division. This process contributes to the developmental growth of the heart." * Changed name of GO:0003305 from "cell migration involved in cardiac jogging" to "cell migration involved in heart jogging" * Added synonym "ubiquitin hydrolase activity" to GO:0004843 * Added general dbxref GOC:rl to synonym ubiquitin hydrolase activity of GO:0004843 * Changed synonym scope of GO:0004843 from "Related" to "Exact" * Changed definition of GO:0014898 from "The enlargement or overgrowth of all or part of the heart due to an increase in size (not length) of individual cardiac muscle fibers, without cell division." to "The enlargement or overgrowth of all or part of the heart muscle due to an increase in size (not length) of individual cardiac muscle fibers, without cell division." * Deleted GO:0015057 --OBO_REL:is_a--> GO:0001653 * Changed definition of GO:0030425 from "A branching protoplasmic process of a neuron that receive and integrate signals coming from axons of other neurons, and convey the resulting signal to the body of the cell." to "A branching protoplasmic process of a neuron that receives and integrate signals coming from axons of other neurons, and conveys the resulting signal to the body of the cell." * Changed synonym scope of GO:0030722 from "Exact" to "Broad" * Changed synonym scope of GO:0030722 from "Related" to "Broad" * Deleted synonym "establishment of oocyte nucleus localization during oocyte axis determination " from GO:0030722 * Deleted GO:0035050 --OBO_REL:is_a--> GO:0007507 * Created link GO:0035050 -part_of-> GO:0007507 * Changed name of GO:0060921 from "SA node cell differentiation" to "sinoatrial node cell differentiation" * Changed definition of GO:0060921 from "The process whereby a relatively unspecialized cell acquires specialized features of an SA node cell. SA node cells are pacemaker cells that are found in the sinoatrial node." to "The process whereby a relatively unspecialized cell acquires specialized features of a sinoatrial (SA) node cell. SA node cells are pacemaker cells that are found in the sinoatrial node." * Deleted synonym "sinoatrial node cell differentiation" from GO:0060921 * Added synonym "SA node cell differentiation" to GO:0060921 * Added general dbxref GOC:mtg_heart to synonym SA node cell differentiation of GO:0060921 * Changed synonym scope of GO:0060921 from "Related" to "Exact" * Changed name of GO:0060922 from "AV node cell differentiation" to "atrioventricular node cell differentiation" * Changed definition of GO:0060922 from "The process whereby a relatively unspecialized cell acquires specialized features of an AV node cell. AV node cells are pacemaker cells that are found in the atrioventricular node." to "The process whereby a relatively unspecialized cell acquires specialized features of an atrioventricular (AV) node cell. AV node cells are pacemaker cells that are found in the atrioventricular node." * Deleted synonym "atrioventricular node cell differentiation" from GO:0060922 * Added synonym "AV node cell differentiation" to GO:0060922 * Added general dbxref GOC:mtg_heart to synonym AV node cell differentiation of GO:0060922 * Changed name of GO:0060928 from "AV node cell development" to "atrioventricular node cell development" * Changed definition of GO:0060928 from "The process whose specific outcome is the progression of an AV node cell over time, from its formation to the mature state." to "The process whose specific outcome is the progression of an atrioventricular (AV) node cell over time, from its formation to the mature state." * Deleted synonym "atrioventricular node cell development" from GO:0060928 * Added synonym "AV node cell development" to GO:0060928 * Added general dbxref GOC:mtg_heart to synonym AV node cell development of GO:0060928 * Changed synonym scope of GO:0060928 from "Related" to "Exact" * Changed name of GO:0060929 from "AV node cell fate commitment" to "atrioventricular node cell fate commitment" * Changed definition of GO:0060929 from "The commitment of cells to AV node cell fates and their capacity to differentiate into AV node cells." to "The commitment of cells to atrioventricular (AV) node cell fates and their capacity to differentiate into AV node cells." * Deleted synonym "atrioventricular node cell fate commitment" from GO:0060929 * Added synonym "AV node cell fate commitment" to GO:0060929 * Added general dbxref GOC:mtg_heart to synonym AV node cell fate commitment of GO:0060929 * Changed synonym scope of GO:0060929 from "Related" to "Exact" * Changed name of GO:0060930 from "SA node cell fate commitment" to "sinoatrial node cell fate commitment" * Changed definition of GO:0060930 from "The commitment of cells to SA node cell fates and their capacity to differentiate into SA node cells. SA node cells are pacemaker cells that are found in the sinoatrial node." to "The commitment of cells to sinoatrial (SA) node cell fates and their capacity to differentiate into SA node cells. SA node cells are pacemaker cells that are found in the sinoatrial node." * Deleted synonym "sinoatrial node cell commitment" from GO:0060930 * Added synonym "SA node cell commitment" to GO:0060930 * Added general dbxref GOC:mtg_heart to synonym SA node cell commitment of GO:0060930 * Changed synonym scope of GO:0060930 from "Related" to "Exact" * Changed name of GO:0060931 from "SA node cell development" to "sinoatrial node cell development" * Changed definition of GO:0060931 from "The process whose specific outcome is the progression of an SA node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sinoatrial node." to "The process whose specific outcome is the progression of a sinoatrial (SA) node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sinoatrial node." * Deleted synonym "sinoatrial node cell development" from GO:0060931 * Added synonym "SA node cell development" to GO:0060931 * Added general dbxref GOC:mtg_heart to synonym SA node cell development of GO:0060931 * Changed synonym scope of GO:0060931 from "Related" to "Exact" * Changed name of GO:0060975 from "cardioblast migration to the midline" to "cardioblast migration to the midline involved in heart field formation" * Created link GO:0060975 -OBO_REL:is_a-> GO:0003318 From gocvs at genome.stanford.edu Wed Oct 28 21:30:14 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 28 Oct 2009 21:30:14 -0700 Subject: [Go-diff] GO update 10/28/2009 Message-ID: <200910290430.n9T4UE63008038@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.861 by 1.863 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created link GO:0001919 -OBO_REL:is_a-> GO:0031323 * Created link GO:0006011 -OBO_REL:is_a-> GO:0044262 * Deleted GO:0006030 --OBO_REL:is_a--> GO:0006044 * Created link GO:0006258 -OBO_REL:is_a-> GO:0044275 * Deleted GO:0006352 --OBO_REL:is_a--> GO:0032774 * Created link GO:0006352 -OBO_REL:is_a-> GO:0006461 * Created link GO:0010021 -OBO_REL:is_a-> GO:0009250 * Deleted GO:0010906 --OBO_REL:is_a--> GO:0010675 * Created link GO:0010906 -OBO_REL:is_a-> GO:0006109 * Deleted GO:0010907 --OBO_REL:is_a--> GO:0010676 * Created link GO:0010907 -OBO_REL:is_a-> GO:0045913 * Created link GO:0015732 -OBO_REL:is_a-> GO:0015908 * Changed definition of GO:0015892 from "The directed movement of iron-siderophores into, out of, within or between cells." to "The directed movement of iron-siderophores into, out of, within or between cells. Iron-siderophores are low molecular weight Fe(III)-chelating substances in the iron-bound form." * Added definition dbxref GOC:mah to GO:0015892 * Created link GO:0015892 -OBO_REL:is_a-> GO:0015688 * Created link GO:0019347 -OBO_REL:is_a-> GO:0016114 * Created link GO:0019347 -OBO_REL:is_a-> GO:0009247 * Created link GO:0019357 -OBO_REL:is_a-> GO:0044271 * Created link GO:0019472 -OBO_REL:is_a-> GO:0018130 * Created link GO:0019682 -OBO_REL:is_a-> GO:0019637 * Deleted GO:0030162 --OBO_REL:is_a--> GO:0032268 * Created link GO:0030206 -OBO_REL:is_a-> GO:0044272 * Created link GO:0030210 -OBO_REL:is_a-> GO:0044272 * Created link GO:0030418 -OBO_REL:is_a-> GO:0018130 * Created link GO:0031460 -OBO_REL:is_a-> GO:0006865 * Deleted GO:0031554 --OBO_REL:is_a--> GO:0032268 * Deleted GO:0031935 --OBO_REL:is_a--> GO:0031445 * Deleted GO:0032423 --OBO_REL:is_a--> GO:0006275 * Deleted GO:0032882 --OBO_REL:is_a--> GO:0033238 * Deleted GO:0032882 --OBO_REL:is_a--> GO:0010675 * Created link GO:0033068 -OBO_REL:is_a-> GO:0018130 * Created link GO:0033069 -OBO_REL:is_a-> GO:0034311 * Deleted GO:0033124 --OBO_REL:is_a--> GO:0009118 * Created link GO:0033384 -OBO_REL:is_a-> GO:0008654 * Created link GO:0033386 -OBO_REL:is_a-> GO:0008654 * Created link GO:0033521 -OBO_REL:is_a-> GO:0008654 * Deleted GO:0033619 --OBO_REL:is_a--> GO:0006508 * Created link GO:0033619 -OBO_REL:is_a-> GO:0051603 * Created link GO:0034222 -OBO_REL:is_a-> GO:0010675 * Created link GO:0034628 -OBO_REL:is_a-> GO:0019355 * Created link GO:0042179 -OBO_REL:is_a-> GO:0018130 * Created link GO:0042437 -OBO_REL:is_a-> GO:0044270 * Created link GO:0042723 -OBO_REL:is_a-> GO:0006807 * Created link GO:0042724 -OBO_REL:is_a-> GO:0044271 * Created link GO:0042724 -OBO_REL:is_a-> GO:0019438 * Created link GO:0042724 -OBO_REL:is_a-> GO:0018130 * Created link GO:0042725 -OBO_REL:is_a-> GO:0044270 * Deleted GO:0043112 --OBO_REL:is_a--> GO:0043170 * Created link GO:0043112 -OBO_REL:is_a-> GO:0044260 * Created link GO:0045337 -OBO_REL:is_a-> GO:0008654 * Created link GO:0045338 -OBO_REL:is_a-> GO:0006644 * Created link GO:0045339 -OBO_REL:is_a-> GO:0009395 * Created link GO:0045461 -OBO_REL:is_a-> GO:0018130 * Created link GO:0046126 -OBO_REL:is_a-> GO:0019438 * Created link GO:0046134 -OBO_REL:is_a-> GO:0044271 * Created link GO:0046135 -OBO_REL:is_a-> GO:0044270 * Created link GO:0046216 -OBO_REL:is_a-> GO:0044270 * Created link GO:0046219 -OBO_REL:is_a-> GO:0018130 * Created link GO:0046232 -OBO_REL:is_a-> GO:0044270 * Created link GO:0046275 -OBO_REL:is_a-> GO:0046700 * Created link GO:0046399 -OBO_REL:is_a-> GO:0016051 * Created link GO:0046443 -OBO_REL:is_a-> GO:0006807 * Created link GO:0046444 -OBO_REL:is_a-> GO:0006807 * Created link GO:0046511 -OBO_REL:is_a-> GO:0044271 * Created link GO:0046512 -OBO_REL:is_a-> GO:0046165 * Created link GO:0046512 -OBO_REL:is_a-> GO:0044271 * Created link GO:0051043 -OBO_REL:is_a-> GO:0032268 * Created link GO:0051044 -OBO_REL:is_a-> GO:0032270 * Created link GO:0051045 -OBO_REL:is_a-> GO:0032269 * Created link GO:0051167 -OBO_REL:is_a-> GO:0019637 * Created link GO:0051937 -OBO_REL:is_a-> GO:0015850 * Deleted GO:0060260 --OBO_REL:is_a--> GO:0044087 * Deleted GO:0060260 --OBO_REL:is_a--> GO:0051128 * Created link GO:0060260 -OBO_REL:is_a-> GO:0043254 * Deleted GO:0060261 --OBO_REL:is_a--> GO:0051130 * Created link GO:0060261 -OBO_REL:is_a-> GO:0031334 * Deleted GO:0060633 --OBO_REL:is_a--> GO:0051129 * Created link GO:0060633 -OBO_REL:is_a-> GO:0031333 * Changed definition of GO:0070939 from "A multisubunit tethering complex, i.e. a protein complex involved in mediating the initial interaction between vesicles and the membranes with which they fuse, that is involved in trafficking from the Golgi apparatus to the ER. In Saccharomyces cerevisiae the Dsl1p complex contains Dsl1p, Tip20p, and Sec39p" to "A multisubunit tethering complex, i.e. a protein complex involved in mediating the initial interaction between vesicles and the membranes with which they fuse, that is involved in trafficking from the Golgi apparatus to the ER. In Saccharomyces cerevisiae the Dsl1p complex contains Dsl1p, Tip20p, and Sec39p." From gocvs at genome.stanford.edu Thu Oct 29 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 29 Oct 2009 21:30:12 -0700 Subject: [Go-diff] GO update 10/29/2009 Message-ID: <200910300430.n9U4UCUa024071@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.863 by 1.866 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0002152 * Created object of type obo:TERM with id GO:0003321 * Created object of type obo:TERM with id GO:0070986 * Created object of type obo:TERM with id GO:0070987 * Created object of type obo:TERM with id GO:0070988 * Created object of type obo:TERM with id GO:0070989 * Created object of type obo:TERM with id GO:0070990 * Created object of type obo:TERM with id GO:0070991 * [Changed name of GO:0002152 from "null" to "bile acid conjugation", Added comment "The bile acid is first activated using CoA by cholate-CoA ligase activity(GO:0047747), then conjugated to taurine or glycine by glycine N-choloyltransferase activity (GO:0047963; appears to use either glycine or taurine).", Set definition of GO:0002152 to "The process whereby bile acids are covalently linked to taurine or glycine.", Added definition dbxref PMID:1094911 to GO:0002152, Added definition dbxref PMID:708413 to GO:0002152, Created link GO:0002152 -OBO_REL:is_a-> GO:0008206, Assigned namespace "biological_process" to GO:0002152] * Changed name of GO:0002152 from "null" to "bile acid conjugation" * Added comment "The bile acid is first activated using CoA by cholate-CoA ligase activity(GO:0047747), then conjugated to taurine or glycine by glycine N-choloyltransferase activity (GO:0047963; appears to use either glycine or taurine)." * Set definition of GO:0002152 to "The process whereby bile acids are covalently linked to taurine or glycine." * Added definition dbxref PMID:1094911 to GO:0002152 * Added definition dbxref PMID:708413 to GO:0002152 * Created link GO:0002152 -OBO_REL:is_a-> GO:0008206 * Assigned namespace "biological_process" to GO:0002152 * [Changed name of GO:0003321 from "null" to "positive regulation of blood pressure by epinephrine-norepinephrine", Set definition of GO:0003321 to "Any process by which the force of blood traveling through the circulatory system is increased by the chemicals epinephrine and norepinephrine.", Added definition dbxref GOC:dph to GO:0003321, Created link GO:0003321 -OBO_REL:is_a-> GO:0001993, Created link GO:0003321 -OBO_REL:is_a-> GO:0045777, Assigned namespace "biological_process" to GO:0003321] * Changed name of GO:0003321 from "null" to "positive regulation of blood pressure by epinephrine-norepinephrine" * Set definition of GO:0003321 to "Any process by which the force of blood traveling through the circulatory system is increased by the chemicals epinephrine and norepinephrine." * Added definition dbxref GOC:dph to GO:0003321 * Created link GO:0003321 -OBO_REL:is_a-> GO:0001993 * Created link GO:0003321 -OBO_REL:is_a-> GO:0045777 * Assigned namespace "biological_process" to GO:0003321 * [Changed name of GO:0070986 from "null" to "left/right axis specification", Set definition of GO:0070986 to "The establishment, maintenance and elaboration of the left/right axis. The left/right axis is defined by a line that runs orthogonal to both the anterior/posterior and dorsal/ventral axes. Each side is defined from the viewpoint of the organism rather of the observer (as per anatomical axes).", Added definition dbxref GOC:dph to GO:0070986, Added definition dbxref GOC:gvg to GO:0070986, Added definition dbxref GOC:mah to GO:0070986, Added synonym "left-right axis specification" to GO:0070986, Added general dbxref GOC:mah to synonym left-right axis specification of GO:0070986, Changed synonym scope of GO:0070986 from "Related" to "Exact", Created link GO:0070986 -OBO_REL:is_a-> GO:0009798, Created link GO:0070986 -part_of-> GO:0060972, Assigned namespace "biological_process" to GO:0070986] * Changed name of GO:0070986 from "null" to "left/right axis specification" * Set definition of GO:0070986 to "The establishment, maintenance and elaboration of the left/right axis. The left/right axis is defined by a line that runs orthogonal to both the anterior/posterior and dorsal/ventral axes. Each side is defined from the viewpoint of the organism rather of the observer (as per anatomical axes)." * Added definition dbxref GOC:dph to GO:0070986 * Added definition dbxref GOC:gvg to GO:0070986 * Added definition dbxref GOC:mah to GO:0070986 * Added synonym "left-right axis specification" to GO:0070986 * Added general dbxref GOC:mah to synonym left-right axis specification of GO:0070986 * Changed synonym scope of GO:0070986 from "Related" to "Exact" * Created link GO:0070986 -OBO_REL:is_a-> GO:0009798 * Created link GO:0070986 -part_of-> GO:0060972 * Assigned namespace "biological_process" to GO:0070986 * [Changed name of GO:0070987 from "null" to "error-free translesion synthesis", Set definition of GO:0070987 to "The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions but does not causes an increase in the endogenous mutation level. For S. cerevisiae, RAD30 encodes DNA polymerase eta, which incorporates two adenines. When incorporated across a thymine-thymine dimer, it does not increase the endogenous mutation level.", Added definition dbxref GOC:elh to GO:0070987, Added GO:0070987 to category gosubset_prok, Created link GO:0070987 -OBO_REL:is_a-> GO:0019985, Assigned namespace "biological_process" to GO:0070987] * Changed name of GO:0070987 from "null" to "error-free translesion synthesis" * Set definition of GO:0070987 to "The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions but does not causes an increase in the endogenous mutation level. For S. cerevisiae, RAD30 encodes DNA polymerase eta, which incorporates two adenines. When incorporated across a thymine-thymine dimer, it does not increase the endogenous mutation level." * Added definition dbxref GOC:elh to GO:0070987 * Added GO:0070987 to category gosubset_prok * Created link GO:0070987 -OBO_REL:is_a-> GO:0019985 * Assigned namespace "biological_process" to GO:0070987 * [Changed name of GO:0070988 from "null" to "demethylation", Set definition of GO:0070988 to "The process of removing one or more methyl groups from a molecule.", Added definition dbxref GOC:rl to GO:0070988, Created link GO:0070988 -OBO_REL:is_a-> GO:0006730, Assigned namespace "biological_process" to GO:0070988] * Changed name of GO:0070988 from "null" to "demethylation" * Set definition of GO:0070988 to "The process of removing one or more methyl groups from a molecule." * Added definition dbxref GOC:rl to GO:0070988 * Created link GO:0070988 -OBO_REL:is_a-> GO:0006730 * Assigned namespace "biological_process" to GO:0070988 * [Changed name of GO:0070989 from "null" to "oxidative demethylation", Set definition of GO:0070989 to "The process of removing one or more methyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate.", Added definition dbxref GOC:mah to GO:0070989, Added definition dbxref GOC:rl to GO:0070989, Created link GO:0070989 -OBO_REL:is_a-> GO:0070988, Created link GO:0070989 -OBO_REL:is_a-> GO:0055114, Assigned namespace "biological_process" to GO:0070989] * Changed name of GO:0070989 from "null" to "oxidative demethylation" * Set definition of GO:0070989 to "The process of removing one or more methyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate." * Added definition dbxref GOC:mah to GO:0070989 * Added definition dbxref GOC:rl to GO:0070989 * Created link GO:0070989 -OBO_REL:is_a-> GO:0070988 * Created link GO:0070989 -OBO_REL:is_a-> GO:0055114 * Assigned namespace "biological_process" to GO:0070989 * [Changed name of GO:0070990 from "null" to "snRNP binding", Set definition of GO:0070990 to "Interacting selectively and non-covalently with any part of a small nuclear ribonucleoprotein particle.", Added definition dbxref GOC:mah to GO:0070990, Added definition dbxref GOC:rl to GO:0070990, Created link GO:0070990 -OBO_REL:is_a-> GO:0043021, Assigned namespace "molecular_function" to GO:0070990] * Changed name of GO:0070990 from "null" to "snRNP binding" * Set definition of GO:0070990 to "Interacting selectively and non-covalently with any part of a small nuclear ribonucleoprotein particle." * Added definition dbxref GOC:mah to GO:0070990 * Added definition dbxref GOC:rl to GO:0070990 * Created link GO:0070990 -OBO_REL:is_a-> GO:0043021 * Assigned namespace "molecular_function" to GO:0070990 * [Changed name of GO:0070991 from "null" to "medium-chain-acyl-CoA dehydrogenase activity", Set definition of GO:0070991 to "Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a medium-chain fatty acid residue.", Added definition dbxref GOC:mah to GO:0070991, Added general dbxref EC:1.3.99.- to GO:0070991, Added synonym "MCAD activity" to GO:0070991, Added general dbxref GOC:mah to synonym MCAD activity of GO:0070991, Changed synonym scope of GO:0070991 from "Related" to "Exact", Created link GO:0070991 -OBO_REL:is_a-> GO:0003995, Assigned namespace "molecular_function" to GO:0070991] * Changed name of GO:0070991 from "null" to "medium-chain-acyl-CoA dehydrogenase activity" * Set definition of GO:0070991 to "Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a medium-chain fatty acid residue." * Added definition dbxref GOC:mah to GO:0070991 * Added general dbxref EC:1.3.99.- to GO:0070991 * Added synonym "MCAD activity" to GO:0070991 * Added general dbxref GOC:mah to synonym MCAD activity of GO:0070991 * Changed synonym scope of GO:0070991 from "Related" to "Exact" * Created link GO:0070991 -OBO_REL:is_a-> GO:0003995 * Assigned namespace "molecular_function" to GO:0070991 * Added synonym "HDR" to GO:0000724 * Added general dbxref GOC:vk to synonym HDR of GO:0000724 * Changed synonym scope of GO:0000724 from "Related" to "Exact" * Added synonym "homology-directed repair" to GO:0000724 * Added general dbxref GOC:vk to synonym homology-directed repair of GO:0000724 * Changed synonym scope of GO:0000724 from "Related" to "Exact" * Deleted GO:0001982 --part_of--> GO:0003084 * Created link GO:0001982 -OBO_REL:is_a-> GO:0003084 * Deleted GO:0001983 --part_of--> GO:0003085 * Created link GO:0001983 -OBO_REL:is_a-> GO:0003085 * Changed name of GO:0001984 from "vasodilation of artery during baroreceptor response to increased systemic arterial blood pressure" to "vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure" * Changed name of GO:0001985 from "negative regulation of heart rate in baroreceptor response to increased systemic arterial blood pressure" to "negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure" * Changed name of GO:0001986 from "negative regulation of the force of heart contraction during baroreceptor response to increased systemic arterial blood pressure" to "negative regulation of the force of heart contraction involved in baroreceptor response to increased systemic arterial blood pressure" * Deleted GO:0001994 --part_of--> GO:0001993 * Deleted GO:0001994 --part_of--> GO:0003084 * Created link GO:0001994 -part_of-> GO:0003321 * Deleted GO:0001996 --part_of--> GO:0001993 * Deleted GO:0001996 --part_of--> GO:0003084 * Created link GO:0001996 -part_of-> GO:0003321 * Deleted GO:0001997 --part_of--> GO:0001993 * Deleted GO:0001997 --part_of--> GO:0003084 * Created link GO:0001997 -part_of-> GO:0003321 * Deleted GO:0001998 --part_of--> GO:0003084 * Created link GO:0001998 -OBO_REL:is_a-> GO:0003084 * Deleted GO:0002006 --part_of--> GO:0003084 * Created link GO:0002006 -OBO_REL:is_a-> GO:0003084 * Deleted GO:0002012 --part_of--> GO:0003084 * Created link GO:0002012 -OBO_REL:is_a-> GO:0003084 * Deleted GO:0002014 --part_of--> GO:0003084 * Created link GO:0002014 -OBO_REL:is_a-> GO:0003084 * Deleted GO:0002025 --part_of--> GO:0003085 * Created link GO:0002025 -OBO_REL:is_a-> GO:0003085 * Deleted GO:0002033 --part_of--> GO:0003085 * Created link GO:0002033 -OBO_REL:is_a-> GO:0003085 * Deleted GO:0003046 --part_of--> GO:0003085 * Created link GO:0003046 -OBO_REL:is_a-> GO:0003085 * Deleted GO:0003069 --part_of--> GO:0003085 * Created link GO:0003069 -OBO_REL:is_a-> GO:0003085 * Changed definition of GO:0003082 from "The process by which angiotensin directly increases the rate of natriuresis and diuresis in the kidney." to "Any process by which angiotensin directly increases the rate of natriuresis and diuresis in the kidney." * Deleted GO:0003102 --part_of--> GO:0003082 * Created link GO:0003102 -OBO_REL:is_a-> GO:0003082 * Deleted GO:0003107 --part_of--> GO:0003102 * Created link GO:0003107 -OBO_REL:is_a-> GO:0003102 * Changed definition of GO:0003313 from "The progression of the heart rudiment over time, from its intitial formation to the mature structure. The heart rudiment is a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment will extend to form the heart tube." to "The progression of the heart rudiment over time, from its initial formation to the mature structure. The heart rudiment is a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." * Deleted GO:0003313 --part_of--> GO:0007507 * Created link GO:0003313 -part_of-> GO:0035050 * Destroyed object GO:0004891 * Set definition of GO:0004897 to "Combining with ciliary neurotrophic factor to initiate a change in cell activity." * Added definition dbxref GOC:mah to GO:0004897 * Added synonym "CNTF receptor activity" to GO:0004897 * Added general dbxref GOC:mah to synonym CNTF receptor activity of GO:0004897 * Changed synonym scope of GO:0004897 from "Related" to "Exact" * Destroyed object GO:0004899 * added secondary id GO:0004899 to GO:0004923 * Added synonym "leukemia inhibitory factor receptor beta-protein activity" to GO:0004923 * Added general dbxref GOC:mah to synonym leukemia inhibitory factor receptor beta-protein activity of GO:0004923 * Changed synonym scope of GO:0004923 from "Related" to "Narrow" * Added synonym "LIF receptor activity" to GO:0004923 * Added general dbxref GOC:mah to synonym LIF receptor activity of GO:0004923 * Changed synonym scope of GO:0004923 from "Related" to "Exact" * Created link GO:0004923 -OBO_REL:is_a-> GO:0005062 * Created link GO:0004923 -OBO_REL:is_a-> GO:0004897 * Set definition of GO:0004997 to "Combining with thyrotropin-releasing hormone to initiate a change in cell activity." * Added definition dbxref GOC:mah to GO:0004997 * Set definition of GO:0004999 to "Combining with vasoactive intestinal polypeptide to initiate a change in cell activity." * Added definition dbxref GOC:mah to GO:0004999 * Set definition of GO:0005010 to "Combining with an insulin-like growth factor to initiate a change in cell activity." * Added definition dbxref GOC:mah to GO:0005010 * Changed definition of GO:0006301 from "Pathways for DNA repair which occur after DNA has replicated, e.g. mismatch repair, and which involve translesion synthesis (TLS-type) DNA polymerases." to "The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication." * Deleted definition dbxref GOC:ai from GO:0006301 * Deleted definition dbxref ISBN:0716735202 from GO:0006301 * Deleted definition dbxref PMID:12154119 from GO:0006301 * Added definition dbxref GOC:elh to GO:0006301 * Set definition of GO:0006361 to "A transcription initiation process that results in RNA synthesis by RNA polymerase I." * Added definition dbxref GOC:mah to GO:0006361 * Changed definition of GO:0006367 from "Any process involved in starting transcription from the RNA polymerase II promoter." to "A transcription initiation process that results in RNA synthesis by RNA polymerase II." * Deleted definition dbxref GOC:jic from GO:0006367 * Added definition dbxref GOC:mah to GO:0006367 * Set definition of GO:0006384 to "A transcription initiation process that results in RNA synthesis by RNA polymerase III." * Added definition dbxref GOC:mah to GO:0006384 * Set definition of GO:0006391 to "A transcription initiation process that takes place at a promoter on the mitochondrial chromosome, and results in RNA synthesis by a mitochondrial RNA polymerase." * Added definition dbxref GOC:mah to GO:0006391 * Created link GO:0006482 -OBO_REL:is_a-> GO:0070988 * Changed definition of GO:0008217 from "The process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure." to "Any process that modulates the force with which blood travels through the circulatory system. The process is controlled by a balance of processes that increase pressure and decrease pressure." * Set definition of GO:0008452 to "Catalysis of the formation of a phosphodiester bond between a hydroxyl group at the end of one RNA chain and the 5'-phosphate group at the end of another." * Added definition dbxref GOC:mah to GO:0008452 * Set definition of GO:0008664 to "Catalysis of the formation of a phosphodiester bond between the 2'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another." * Added definition dbxref GOC:mah to GO:0008664 * Added definition dbxref PMID:8940112 to GO:0008664 * Deleted GO:0010021 --OBO_REL:is_a--> GO:0033692 * Deleted GO:0010850 --part_of--> GO:0008217 * Created link GO:0010850 -OBO_REL:is_a-> GO:0008217 * Deleted GO:0015732 --OBO_REL:is_a--> GO:0015718 * Deleted GO:0015892 --OBO_REL:is_a--> GO:0006826 * Added comment "Note that this term represents an activity and not a gene product. Consider also annotating to the molecular function term 'receptor activity ; GO:0004872'." * added secondary id GO:0004891 to GO:0016934 * Added synonym "glycine-inhibited chloride channel activity" to GO:0016934 * Created link GO:0016934 -OBO_REL:is_a-> GO:0005237 * Set definition of GO:0016937 to "Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a short branched chain fatty acid residue." * Added definition dbxref GOC:mah to GO:0016937 * Set definition of GO:0017099 to "Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a very-long-chain fatty acid residue." * Added definition dbxref GOC:mah to GO:0017099 * Changed name of GO:0019985 from "bypass DNA synthesis" to "translesion synthesis" * Changed definition of GO:0019985 from "The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized replication complex inserts a random nucleotide across from the lesion and then continues DNA synthesis beyond the lesion. This process is often mutagenic." to "The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide." * Added definition dbxref GOC:elh to GO:0019985 * Added synonym "bypass DNA synthesis" to GO:0019985 * Added general dbxref GOC:elh to synonym bypass DNA synthesis of GO:0019985 * Changed synonym scope of GO:0019985 from "Related" to "Exact" * Deleted GO:0019985 --OBO_REL:is_a--> GO:0006281 * Created link GO:0019985 -OBO_REL:is_a-> GO:0006301 * Changed definition of GO:0030519 from "Interacting selectively and non-covalently with a protein constituent of a small nucleolar ribonucleoprotein particle." to "Interacting selectively and non-covalently with any part of a small nucleolar ribonucleoprotein particle." * Deleted GO:0031623 --OBO_REL:is_a--> GO:0044260 * Changed definition of GO:0035050 from "The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure." to "The process whose specific outcome is the progression of the embryonic heart tube over time, from its formation to the mature structure. The heart tube forms as the heart rudiment from the heart field." * Changed definition of GO:0042275 from "The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA without removing the replication-blocking lesions and without increasing the endogenous mutation rate." to "The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA via processes such as template switching, which does not remove the replication-blocking lesions and but does not increase the endogenous mutation rate." * Added definition dbxref GOC:elh to GO:0042275 * Deleted synonym "error-free translesion synthesis" from GO:0042275 * Deleted GO:0042275 --OBO_REL:is_a--> GO:0045021 * Changed name of GO:0042276 from "error-prone postreplication DNA repair" to "error-prone translesion synthesis" * Changed definition of GO:0042276 from "The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication, without removing the replication-blocking lesions, and with an incre