From gocvs at genome.stanford.edu Tue Sep 1 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 1 Sep 2009 21:30:13 -0700 Subject: [Go-diff] GO update 09/01/2009 Message-ID: <200909020430.n824UDlU012313@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.769 by 1.770 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070890 * Created object of type obo:TERM with id GO:0070891 * Created object of type obo:TERM with id GO:0070892 * Created object of type obo:TERM with id GO:0070893 * Created object of type obo:TERM with id GO:0070894 * Created object of type obo:TERM with id GO:0070895 * Created object of type obo:TERM with id GO:0070896 * Created object of type obo:TERM with id GO:0070897 * Created object of type obo:TERM with id GO:0070898 * [Changed name of GO:0070890 from "null" to "sodium-dependent L-ascorbate transmembrane transporter activity", Set definition of GO:0070890 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: L-ascorbate(out) + Na+(out) = L-ascorbate(in) + Na+(in).", Added definition dbxref GOC:mah to GO:0070890, Added definition dbxref PMID:18094143 to GO:0070890, Created link GO:0070890 -OBO_REL:is_a-> GO:0015370, Created link GO:0070890 -OBO_REL:is_a-> GO:0015229, Assigned namespace "molecular_function" to GO:0070890] * Changed name of GO:0070890 from "null" to "sodium-dependent L-ascorbate transmembrane transporter activity" * Set definition of GO:0070890 to "Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: L-ascorbate(out) + Na+(out) = L-ascorbate(in) + Na+(in)." * Added definition dbxref GOC:mah to GO:0070890 * Added definition dbxref PMID:18094143 to GO:0070890 * Created link GO:0070890 -OBO_REL:is_a-> GO:0015370 * Created link GO:0070890 -OBO_REL:is_a-> GO:0015229 * Assigned namespace "molecular_function" to GO:0070890 * [Changed name of GO:0070891 from "null" to "lipoteichoic acid binding", Set definition of GO:0070891 to "Interacting selectively and non-covalently with lipoteichoic acid.", Added definition dbxref GOC:add to GO:0070891, Added definition dbxref PMID:14665680 to GO:0070891, Created link GO:0070891 -OBO_REL:is_a-> GO:0005488, Assigned namespace "molecular_function" to GO:0070891] * Changed name of GO:0070891 from "null" to "lipoteichoic acid binding" * Set definition of GO:0070891 to "Interacting selectively and non-covalently with lipoteichoic acid." * Added definition dbxref GOC:add to GO:0070891 * Added definition dbxref PMID:14665680 to GO:0070891 * Created link GO:0070891 -OBO_REL:is_a-> GO:0005488 * Assigned namespace "molecular_function" to GO:0070891 * [Changed name of GO:0070892 from "null" to "lipoteichoic acid receptor activity", Set definition of GO:0070892 to "Combining with lipoteichoic acid to initiate a change in cell activity.", Added definition dbxref GOC:add to GO:0070892, Added definition dbxref PMID:14665680 to GO:0070892, Created link GO:0070892 -OBO_REL:is_a-> GO:0008329, Created link GO:0070892 -OBO_REL:is_a-> GO:0070891, Assigned namespace "molecular_function" to GO:0070892] * Changed name of GO:0070892 from "null" to "lipoteichoic acid receptor activity" * Set definition of GO:0070892 to "Combining with lipoteichoic acid to initiate a change in cell activity." * Added definition dbxref GOC:add to GO:0070892 * Added definition dbxref PMID:14665680 to GO:0070892 * Created link GO:0070892 -OBO_REL:is_a-> GO:0008329 * Created link GO:0070892 -OBO_REL:is_a-> GO:0070891 * Assigned namespace "molecular_function" to GO:0070892 * [Changed name of GO:0070893 from "null" to "transposon integration", Set definition of GO:0070893 to "Any process by which a transposable element is incorporated into another DNA molecule such as a chromosome.", Added definition dbxref GOC:jp to GO:0070893, Added definition dbxref PMID:10882723 to GO:0070893, Created link GO:0070893 -OBO_REL:is_a-> GO:0015074, Created link GO:0070893 -OBO_REL:is_a-> GO:0032196, Assigned namespace "biological_process" to GO:0070893] * Changed name of GO:0070893 from "null" to "transposon integration" * Set definition of GO:0070893 to "Any process by which a transposable element is incorporated into another DNA molecule such as a chromosome." * Added definition dbxref GOC:jp to GO:0070893 * Added definition dbxref PMID:10882723 to GO:0070893 * Created link GO:0070893 -OBO_REL:is_a-> GO:0015074 * Created link GO:0070893 -OBO_REL:is_a-> GO:0032196 * Assigned namespace "biological_process" to GO:0070893 * [Changed name of GO:0070894 from "null" to "regulation of transposon integration", Set definition of GO:0070894 to "Any process that modulates the frequency, rate or extent of regulation of transposon integration, a process by which a transposable element is incorporated into another DNA molecule.", Added definition dbxref GOC:mah to GO:0070894, Created link GO:0070894 -OBO_REL:is_a-> GO:0010528, Created link GO:0070894 -regulates-> GO:0070893, Assigned namespace "biological_process" to GO:0070894] * Changed name of GO:0070894 from "null" to "regulation of transposon integration" * Set definition of GO:0070894 to "Any process that modulates the frequency, rate or extent of regulation of transposon integration, a process by which a transposable element is incorporated into another DNA molecule." * Added definition dbxref GOC:mah to GO:0070894 * Created link GO:0070894 -OBO_REL:is_a-> GO:0010528 * Created link GO:0070894 -regulates-> GO:0070893 * Assigned namespace "biological_process" to GO:0070894 * [Changed name of GO:0070895 from "null" to "negative regulation of transposon integration", Set definition of GO:0070895 to "Any process that stops, prevents or reduces the frequency, rate or extent of transposon integration, a process by which a transposable element is incorporated into another DNA molecule.", Added definition dbxref GOC:mah to GO:0070895, Added synonym "down regulation of transposon integration" to GO:0070895, Added general dbxref GOC:mah to synonym down regulation of transposon integration of GO:0070895, Changed synonym scope of GO:0070895 from "Related" to "Exact", Added synonym "down-regulation of transposon integration" to GO:0070895, Added general dbxref GOC:mah to synonym down-regulation of transposon integration of GO:0070895, Changed synonym scope of GO:0070895 from "Related" to "Exact", Added synonym "downregulation of transposon integration" to GO:0070895, Added general dbxref GOC:mah to synonym downregulation of transposon integration of GO:0070895, Changed synonym scope of GO:0070895 from "Related" to "Exact", Added synonym "inhibition of transposon integration" to GO:0070895, Added general dbxref GOC:mah to synonym inhibition of transposon integration of GO:0070895, Changed synonym scope of GO:0070895 from "Related" to "Narrow", Created link GO:0070895 -OBO_REL:is_a-> GO:0010529, Created link GO:0070895 -negatively_regulates-> GO:0070893, Created link GO:0070895 -OBO_REL:is_a-> GO:0070894, Assigned namespace "biological_process" to GO:0070895] * Changed name of GO:0070895 from "null" to "negative regulation of transposon integration" * Set definition of GO:0070895 to "Any process that stops, prevents or reduces the frequency, rate or extent of transposon integration, a process by which a transposable element is incorporated into another DNA molecule." * Added definition dbxref GOC:mah to GO:0070895 * Added synonym "down regulation of transposon integration" to GO:0070895 * Added general dbxref GOC:mah to synonym down regulation of transposon integration of GO:0070895 * Changed synonym scope of GO:0070895 from "Related" to "Exact" * Added synonym "down-regulation of transposon integration" to GO:0070895 * Added general dbxref GOC:mah to synonym down-regulation of transposon integration of GO:0070895 * Changed synonym scope of GO:0070895 from "Related" to "Exact" * Added synonym "downregulation of transposon integration" to GO:0070895 * Added general dbxref GOC:mah to synonym downregulation of transposon integration of GO:0070895 * Changed synonym scope of GO:0070895 from "Related" to "Exact" * Added synonym "inhibition of transposon integration" to GO:0070895 * Added general dbxref GOC:mah to synonym inhibition of transposon integration of GO:0070895 * Changed synonym scope of GO:0070895 from "Related" to "Narrow" * Created link GO:0070895 -OBO_REL:is_a-> GO:0010529 * Created link GO:0070895 -negatively_regulates-> GO:0070893 * Created link GO:0070895 -OBO_REL:is_a-> GO:0070894 * Assigned namespace "biological_process" to GO:0070895 * [Changed name of GO:0070896 from "null" to "positive regulation of transposon integration", Set definition of GO:0070896 to "Any process that activates or increases the frequency, rate or extent of transposon integration, a process by which a transposable element is incorporated into another DNA molecule.", Added definition dbxref GOC:mah to GO:0070896, Added synonym "activation of transposon integration" to GO:0070896, Added general dbxref GOC:mah to synonym activation of transposon integration of GO:0070896, Changed synonym scope of GO:0070896 from "Related" to "Narrow", Added synonym "stimulation of transposon integration" to GO:0070896, Added general dbxref GOC:mah to synonym stimulation of transposon integration of GO:0070896, Changed synonym scope of GO:0070896 from "Related" to "Narrow", Added synonym "up regulation of transposon integration" to GO:0070896, Added general dbxref GOC:mah to synonym up regulation of transposon integration of GO:0070896, Changed synonym scope of GO:0070896 from "Related" to "Exact", Added synonym "up-regulation of transposon integration" to GO:0070896, Added general dbxref GOC:mah to synonym up-regulation of transposon integration of GO:0070896, Changed synonym scope of GO:0070896 from "Related" to "Exact", Added synonym "upregulation of transposon integration" to GO:0070896, Added general dbxref GOC:mah to synonym upregulation of transposon integration of GO:0070896, Changed synonym scope of GO:0070896 from "Related" to "Exact", Created link GO:0070896 -OBO_REL:is_a-> GO:0070894, Created link GO:0070896 -positively_regulates-> GO:0070893, Created link GO:0070896 -OBO_REL:is_a-> GO:0010530, Assigned namespace "biological_process" to GO:0070896] * Changed name of GO:0070896 from "null" to "positive regulation of transposon integration" * Set definition of GO:0070896 to "Any process that activates or increases the frequency, rate or extent of transposon integration, a process by which a transposable element is incorporated into another DNA molecule." * Added definition dbxref GOC:mah to GO:0070896 * Added synonym "activation of transposon integration" to GO:0070896 * Added general dbxref GOC:mah to synonym activation of transposon integration of GO:0070896 * Changed synonym scope of GO:0070896 from "Related" to "Narrow" * Added synonym "stimulation of transposon integration" to GO:0070896 * Added general dbxref GOC:mah to synonym stimulation of transposon integration of GO:0070896 * Changed synonym scope of GO:0070896 from "Related" to "Narrow" * Added synonym "up regulation of transposon integration" to GO:0070896 * Added general dbxref GOC:mah to synonym up regulation of transposon integration of GO:0070896 * Changed synonym scope of GO:0070896 from "Related" to "Exact" * Added synonym "up-regulation of transposon integration" to GO:0070896 * Added general dbxref GOC:mah to synonym up-regulation of transposon integration of GO:0070896 * Changed synonym scope of GO:0070896 from "Related" to "Exact" * Added synonym "upregulation of transposon integration" to GO:0070896 * Added general dbxref GOC:mah to synonym upregulation of transposon integration of GO:0070896 * Changed synonym scope of GO:0070896 from "Related" to "Exact" * Created link GO:0070896 -OBO_REL:is_a-> GO:0070894 * Created link GO:0070896 -positively_regulates-> GO:0070893 * Created link GO:0070896 -OBO_REL:is_a-> GO:0010530 * Assigned namespace "biological_process" to GO:0070896 * [Changed name of GO:0070897 from "null" to "transcriptional preinitiation complex assembly", Set definition of GO:0070897 to "The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription.", Added definition dbxref GOC:jp to GO:0070897, Added synonym "transcription PIC biosynthesis" to GO:0070897, Added general dbxref GOC:mah to synonym transcription PIC biosynthesis of GO:0070897, Changed synonym scope of GO:0070897 from "Related" to "Exact", Added synonym "transcription PIC formation" to GO:0070897, Added general dbxref GOC:mah to synonym transcription PIC formation of GO:0070897, Changed synonym scope of GO:0070897 from "Related" to "Exact", Added synonym "transcriptional preinitiation complex formation" to GO:0070897, Added general dbxref GOC:mah to synonym transcriptional preinitiation complex formation of GO:0070897, Changed synonym scope of GO:0070897 from "Related" to "Exact", Created link GO:0070897 -OBO_REL:is_a-> GO:0065004, Created link GO:0070897 -part_of-> GO:0006367, Assigned namespace "biological_process" to GO:0070897] * Changed name of GO:0070897 from "null" to "transcriptional preinitiation complex assembly" * Set definition of GO:0070897 to "The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription." * Added definition dbxref GOC:jp to GO:0070897 * Added synonym "transcription PIC biosynthesis" to GO:0070897 * Added general dbxref GOC:mah to synonym transcription PIC biosynthesis of GO:0070897 * Changed synonym scope of GO:0070897 from "Related" to "Exact" * Added synonym "transcription PIC formation" to GO:0070897 * Added general dbxref GOC:mah to synonym transcription PIC formation of GO:0070897 * Changed synonym scope of GO:0070897 from "Related" to "Exact" * Added synonym "transcriptional preinitiation complex formation" to GO:0070897 * Added general dbxref GOC:mah to synonym transcriptional preinitiation complex formation of GO:0070897 * Changed synonym scope of GO:0070897 from "Related" to "Exact" * Created link GO:0070897 -OBO_REL:is_a-> GO:0065004 * Created link GO:0070897 -part_of-> GO:0006367 * Assigned namespace "biological_process" to GO:0070897 * [Changed name of GO:0070898 from "null" to "RNA polymerase III transcriptional preinitiation complex assembly", Set definition of GO:0070898 to "The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from the RNA polymerase III promoter.", Added definition dbxref GOC:jp to GO:0070898, Added definition dbxref PMID:11387215 to GO:0070898, Added synonym "RNA polymerase III transcription PIC biosynthesis" to GO:0070898, Added general dbxref GOC:mah to synonym RNA polymerase III transcription PIC biosynthesis of GO:0070898, Changed synonym scope of GO:0070898 from "Related" to "Exact", Added synonym "RNA polymerase III transcription PIC formation" to GO:0070898, Added general dbxref GOC:mah to synonym RNA polymerase III transcription PIC formation of GO:0070898, Changed synonym scope of GO:0070898 from "Related" to "Exact", Added synonym "RNA polymerase III transcriptional preinitiation complex formation" to GO:0070898, Added general dbxref GOC:mah to synonym RNA polymerase III transcriptional preinitiation complex formation of GO:0070898, Changed synonym scope of GO:0070898 from "Related" to "Exact", Created link GO:0070898 -part_of-> GO:0006367, Created link GO:0070898 -OBO_REL:is_a-> GO:0070897, Assigned namespace "biological_process" to GO:0070898] * Changed name of GO:0070898 from "null" to "RNA polymerase III transcriptional preinitiation complex assembly" * Set definition of GO:0070898 to "The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from the RNA polymerase III promoter." * Added definition dbxref GOC:jp to GO:0070898 * Added definition dbxref PMID:11387215 to GO:0070898 * Added synonym "RNA polymerase III transcription PIC biosynthesis" to GO:0070898 * Added general dbxref GOC:mah to synonym RNA polymerase III transcription PIC biosynthesis of GO:0070898 * Changed synonym scope of GO:0070898 from "Related" to "Exact" * Added synonym "RNA polymerase III transcription PIC formation" to GO:0070898 * Added general dbxref GOC:mah to synonym RNA polymerase III transcription PIC formation of GO:0070898 * Changed synonym scope of GO:0070898 from "Related" to "Exact" * Added synonym "RNA polymerase III transcriptional preinitiation complex formation" to GO:0070898 * Added general dbxref GOC:mah to synonym RNA polymerase III transcriptional preinitiation complex formation of GO:0070898 * Changed synonym scope of GO:0070898 from "Related" to "Exact" * Created link GO:0070898 -part_of-> GO:0006367 * Created link GO:0070898 -OBO_REL:is_a-> GO:0070897 * Assigned namespace "biological_process" to GO:0070898 * Changed name of GO:0017055 from "negative regulation of transcriptional preinitiation complex assembly" to "negative regulation of RNA polymerase II transcriptional preinitiation complex assembly" * Changed definition of GO:0017055 from "Any process that stops, prevents or reduces the frequency, rate or extent of transcriptional preinitiation complex assembly." to "Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly." * Deleted synonym "down regulation of transcriptional preinitiation complex assembly" from GO:0017055 * Deleted synonym "down-regulation of transcriptional preinitiation complex assembly" from GO:0017055 * Deleted synonym "downregulation of transcriptional preinitiation complex assembly" from GO:0017055 * Deleted synonym "inhibition of transcriptional preinitiation complex assembly" from GO:0017055 * Deleted synonym "negative regulation of transcriptional pre-initiation complex assembly" from GO:0017055 * Deleted synonym "negative regulation of transcriptional pre-initiation complex biosynthesis" from GO:0017055 * Deleted synonym "negative regulation of transcriptional preinitiation complex formation" from GO:0017055 * Added synonym "down regulation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0017055 * Changed synonym scope of GO:0017055 from "Related" to "Exact" * Added synonym "down-regulation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0017055 * Changed synonym scope of GO:0017055 from "Related" to "Exact" * Added synonym "downregulation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0017055 * Changed synonym scope of GO:0017055 from "Related" to "Exact" * Added synonym "inhibition of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0017055 * Changed synonym scope of GO:0017055 from "Related" to "Narrow" * Added synonym "negative regulation of RNA polymerase II transcriptional pre-initiation complex assembly" to GO:0017055 * Changed synonym scope of GO:0017055 from "Related" to "Exact" * Added synonym "negative regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis" to GO:0017055 * Changed synonym scope of GO:0017055 from "Related" to "Exact" * Added synonym "negative regulation of RNA polymerase II transcriptional preinitiation complex formation" to GO:0017055 * Changed synonym scope of GO:0017055 from "Related" to "Exact" * Changed name of GO:0018366 from "L-amino acid racemization" to "chiral amino acid racemization" * Changed definition of GO:0018366 from "The formation of a mixture of the two possible enantiomers from the L-isomer of a chiral amino acid." to "The formation of a mixture of the two possible enantiomers from the D- or L-enantiomer of a chiral amino acid." * Added definition dbxref GOC:jsg to GO:0018366 * Created link GO:0034209 -OBO_REL:is_a-> GO:0016125 * Created link GO:0034210 -OBO_REL:is_a-> GO:0016125 * Changed name of GO:0045898 from "regulation of transcriptional preinitiation complex assembly" to "regulation of RNA polymerase II transcriptional preinitiation complex assembly" * Changed definition of GO:0045898 from "Any process that modulates the frequency, rate or extent of transcriptional preinitiation complex assembly." to "Any process that modulates the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly." * Deleted synonym "regulation of transcriptional pre-initiation complex assembly" from GO:0045898 * Deleted synonym "regulation of transcriptional pre-initiation complex biosynthesis" from GO:0045898 * Deleted synonym "regulation of transcriptional preinitiation complex formation" from GO:0045898 * Added synonym "regulation of RNA polymerase II transcriptional pre-initiation complex assembly" to GO:0045898 * Changed synonym scope of GO:0045898 from "Related" to "Exact" * Added synonym "regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis" to GO:0045898 * Changed synonym scope of GO:0045898 from "Related" to "Exact" * Added synonym "regulation of RNA polymerase II transcriptional preinitiation complex formation" to GO:0045898 * Changed name of GO:0045899 from "positive regulation of transcriptional preinitiation complex assembly" to "positive regulation of RNA polymerase II transcriptional preinitiation complex assembly" * Changed definition of GO:0045899 from "Any process that activates or increases the frequency, rate or extent of transcriptional preinitiation complex assembly." to "Any process that activates or increases the frequency, rate or extent of RNA polymerase II transcriptional preinitiation complex assembly." * Deleted synonym "activation of transcriptional preinitiation complex assembly" from GO:0045899 * Deleted synonym "positive regulation of transcriptional pre-initiation complex assembly" from GO:0045899 * Deleted synonym "positive regulation of transcriptional pre-initiation complex biosynthesis" from GO:0045899 * Deleted synonym "positive regulation of transcriptional preinitiation complex formation" from GO:0045899 * Deleted synonym "stimulation of transcriptional preinitiation complex assembly" from GO:0045899 * Deleted synonym "up regulation of transcriptional preinitiation complex assembly" from GO:0045899 * Deleted synonym "up-regulation of transcriptional preinitiation complex assembly" from GO:0045899 * Deleted synonym "upregulation of transcriptional preinitiation complex assembly" from GO:0045899 * Added synonym "activation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Narrow" * Added synonym "positive regulation of RNA polymerase II transcriptional pre-initiation complex assembly" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Exact" * Added synonym "positive regulation of RNA polymerase II transcriptional pre-initiation complex biosynthesis" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Exact" * Added synonym "positive regulation of RNA polymerase II transcriptional preinitiation complex formation" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Exact" * Added synonym "stimulation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Narrow" * Added synonym "up regulation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Exact" * Added synonym "up-regulation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Exact" * Added synonym "upregulation of RNA polymerase II transcriptional preinitiation complex assembly" to GO:0045899 * Changed synonym scope of GO:0045899 from "Related" to "Exact" * Changed name of GO:0051123 from "transcriptional preinitiation complex assembly" to "RNA polymerase II transcriptional preinitiation complex assembly" * Deleted synonym "transcription PIC biosynthesis" from GO:0051123 * Deleted synonym "transcription PIC formation" from GO:0051123 * Deleted synonym "transcriptional preinitiation complex formation" from GO:0051123 * Added synonym "RNA polymerase II transcription PIC biosynthesis" to GO:0051123 * Changed synonym scope of GO:0051123 from "Related" to "Exact" * Added synonym "RNA polymerase II transcription PIC formation" to GO:0051123 * Changed synonym scope of GO:0051123 from "Related" to "Exact" * Added synonym "RNA polymerase II transcriptional preinitiation complex formation" to GO:0051123 * Changed synonym scope of GO:0051123 from "Related" to "Exact" * Deleted GO:0051123 --OBO_REL:is_a--> GO:0065004 * Created link GO:0051123 -OBO_REL:is_a-> GO:0070897 From gocvs at genome.stanford.edu Wed Sep 2 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 2 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/02/2009 Message-ID: <200909030430.n834UCcs006487@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.770 by 1.772 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070899 * Created object of type obo:TERM with id GO:0070900 * Created object of type obo:TERM with id GO:0070901 * Created object of type obo:TERM with id GO:0070902 * Created object of type obo:TERM with id GO:0070903 * Created object of type obo:TERM with id GO:0090066 * Created object of type obo:TERM with id GO:0090067 * [Changed name of GO:0070899 from "null" to "mitochondrial tRNA wobble uridine modification", Set definition of GO:0070899 to "The process whereby a uridine in position 34 of a mitochondrial tRNA is post-transcriptionally modified.", Added definition dbxref GOC:mah to GO:0070899, Added definition dbxref GOC:mcc to GO:0070899, Created link GO:0070899 -OBO_REL:is_a-> GO:0070900, Created link GO:0070899 -OBO_REL:is_a-> GO:0002098, Assigned namespace "biological_process" to GO:0070899] * Changed name of GO:0070899 from "null" to "mitochondrial tRNA wobble uridine modification" * Set definition of GO:0070899 to "The process whereby a uridine in position 34 of a mitochondrial tRNA is post-transcriptionally modified." * Added definition dbxref GOC:mah to GO:0070899 * Added definition dbxref GOC:mcc to GO:0070899 * Created link GO:0070899 -OBO_REL:is_a-> GO:0070900 * Created link GO:0070899 -OBO_REL:is_a-> GO:0002098 * Assigned namespace "biological_process" to GO:0070899 * [Changed name of GO:0070900 from "null" to "mitochondrial tRNA modification", Set definition of GO:0070900 to "The covalent alteration of one or more nucleotides within a mitochondrial tRNA molecule to produce a mitochondrial tRNA molecule with a sequence that differs from that coded genetically.", Added definition dbxref GOC:mah to GO:0070900, Added definition dbxref GOC:mcc to GO:0070900, Created link GO:0070900 -OBO_REL:is_a-> GO:0070525, Created link GO:0070900 -OBO_REL:is_a-> GO:0006400, Assigned namespace "biological_process" to GO:0070900] * Changed name of GO:0070900 from "null" to "mitochondrial tRNA modification" * Set definition of GO:0070900 to "The covalent alteration of one or more nucleotides within a mitochondrial tRNA molecule to produce a mitochondrial tRNA molecule with a sequence that differs from that coded genetically." * Added definition dbxref GOC:mah to GO:0070900 * Added definition dbxref GOC:mcc to GO:0070900 * Created link GO:0070900 -OBO_REL:is_a-> GO:0070525 * Created link GO:0070900 -OBO_REL:is_a-> GO:0006400 * Assigned namespace "biological_process" to GO:0070900 * [Changed name of GO:0070901 from "null" to "mitochondrial tRNA methylation", Set definition of GO:0070901 to "The posttranscriptional addition of methyl groups to specific residues in a mitochondrial tRNA molecule.", Added definition dbxref GOC:mah to GO:0070901, Added definition dbxref GOC:mcc to GO:0070901, Created link GO:0070901 -OBO_REL:is_a-> GO:0030488, Created link GO:0070901 -OBO_REL:is_a-> GO:0070900, Assigned namespace "biological_process" to GO:0070901] * Changed name of GO:0070901 from "null" to "mitochondrial tRNA methylation" * Set definition of GO:0070901 to "The posttranscriptional addition of methyl groups to specific residues in a mitochondrial tRNA molecule." * Added definition dbxref GOC:mah to GO:0070901 * Added definition dbxref GOC:mcc to GO:0070901 * Created link GO:0070901 -OBO_REL:is_a-> GO:0030488 * Created link GO:0070901 -OBO_REL:is_a-> GO:0070900 * Assigned namespace "biological_process" to GO:0070901 * [Changed name of GO:0070902 from "null" to "mitochondrial tRNA pseudouridine synthesis", Set definition of GO:0070902 to "The intramolecular conversion of uridine to pseudouridine in a mitochondrial tRNA molecule.", Added definition dbxref GOC:mah to GO:0070902, Added definition dbxref GOC:mcc to GO:0070902, Created link GO:0070902 -OBO_REL:is_a-> GO:0031119, Created link GO:0070902 -OBO_REL:is_a-> GO:0070900, Assigned namespace "biological_process" to GO:0070902] * Changed name of GO:0070902 from "null" to "mitochondrial tRNA pseudouridine synthesis" * Set definition of GO:0070902 to "The intramolecular conversion of uridine to pseudouridine in a mitochondrial tRNA molecule." * Added definition dbxref GOC:mah to GO:0070902 * Added definition dbxref GOC:mcc to GO:0070902 * Created link GO:0070902 -OBO_REL:is_a-> GO:0031119 * Created link GO:0070902 -OBO_REL:is_a-> GO:0070900 * Assigned namespace "biological_process" to GO:0070902 * [Changed name of GO:0070903 from "null" to "mitochondrial tRNA thio-modification", Set definition of GO:0070903 to "The addition a sulfur atom to a nucleotide in a mitochondrial tRNA molecule.", Added definition dbxref GOC:mah to GO:0070903, Added definition dbxref GOC:mcc to GO:0070903, Created link GO:0070903 -OBO_REL:is_a-> GO:0034227, Created link GO:0070903 -OBO_REL:is_a-> GO:0070900, Assigned namespace "biological_process" to GO:0070903] * Changed name of GO:0070903 from "null" to "mitochondrial tRNA thio-modification" * Set definition of GO:0070903 to "The addition a sulfur atom to a nucleotide in a mitochondrial tRNA molecule." * Added definition dbxref GOC:mah to GO:0070903 * Added definition dbxref GOC:mcc to GO:0070903 * Created link GO:0070903 -OBO_REL:is_a-> GO:0034227 * Created link GO:0070903 -OBO_REL:is_a-> GO:0070900 * Assigned namespace "biological_process" to GO:0070903 * [Changed name of GO:0090066 from "null" to "regulation of anatomical structure size", Set definition of GO:0090066 to "Any process that modulates the size of an anatomical structure.", Added definition dbxref GOC:dph to GO:0090066, Added definition dbxref GOC:tb to GO:0090066, Created link GO:0090066 -OBO_REL:is_a-> GO:0065008, Assigned namespace "biological_process" to GO:0090066] * Changed name of GO:0090066 from "null" to "regulation of anatomical structure size" * Set definition of GO:0090066 to "Any process that modulates the size of an anatomical structure." * Added definition dbxref GOC:dph to GO:0090066 * Added definition dbxref GOC:tb to GO:0090066 * Created link GO:0090066 -OBO_REL:is_a-> GO:0065008 * Assigned namespace "biological_process" to GO:0090066 * [Changed name of GO:0090067 from "null" to "regulation of thalamus size", Set definition of GO:0090067 to "Any process that modulates the size of the thalamus. The thalamus is a part of the diencephalon that is composed of the dorsal thalamus and the ventral thalamus.", Added definition dbxref GOC:dph to GO:0090067, Added definition dbxref GOC:tb to GO:0090067, Created link GO:0090067 -OBO_REL:is_a-> GO:0090066, Assigned namespace "biological_process" to GO:0090067] * Changed name of GO:0090067 from "null" to "regulation of thalamus size" * Set definition of GO:0090067 to "Any process that modulates the size of the thalamus. The thalamus is a part of the diencephalon that is composed of the dorsal thalamus and the ventral thalamus." * Added definition dbxref GOC:dph to GO:0090067 * Added definition dbxref GOC:tb to GO:0090067 * Created link GO:0090067 -OBO_REL:is_a-> GO:0090066 * Assigned namespace "biological_process" to GO:0090067 * Changed name of GO:0000903 from "cellular morphogenesis during vegetative growth" to "cell morphogenesis during vegetative growth" * Changed definition of GO:0000903 from "The change in form (cell shape and size) that occurs during the development of a cell as it progresses through a mitotic cell cycle when it is not undergoing terminal differentiation." to "The change in cell shape that occurs during the vegetative growth phase. The vegetative growth phase is the growth phase during which single celled organisms reproduce by budding or other asexual methods." * Added synonym "cellular morphogenesis during vegetative growth" to GO:0000903 * Added general dbxref GOC:tb to synonym cellular morphogenesis during vegetative growth of GO:0000903 * Added general dbxref GOC:dph to synonym cellular morphogenesis during vegetative growth of GO:0000903 * Changed synonym scope of GO:0000903 from "Related" to "Exact" * Deleted GO:0000903 --part_of--> GO:0016049 * Deleted GO:0008361 --OBO_REL:is_a--> GO:0065008 * Created link GO:0008361 -OBO_REL:is_a-> GO:0032535 * Deleted GO:0014881 --OBO_REL:is_a--> GO:0065008 * Created link GO:0014881 -OBO_REL:is_a-> GO:0090066 * Changed definition of GO:0022604 from "Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process by which the size or shape of a cell is generated and organized." to "Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process by which the shape of a cell is generated and organized." * Deleted GO:0032535 --OBO_REL:is_a--> GO:0065008 * Created link GO:0032535 -OBO_REL:is_a-> GO:0090066 * Deleted GO:0035150 --OBO_REL:is_a--> GO:0065008 * Created link GO:0035150 -OBO_REL:is_a-> GO:0090066 * Deleted synonym "regulation of organ size" from GO:0046620 * Deleted synonym "down regulation of organ size" from GO:0046621 * Deleted synonym "down-regulation of organ size" from GO:0046621 * Deleted synonym "downregulation of organ size" from GO:0046621 * Deleted synonym "inhibition of organ size" from GO:0046621 * Deleted synonym "negative regulation of organ size" from GO:0046621 * Deleted synonym "activation of organ size" from GO:0046622 * Deleted synonym "positive regulation of organ size" from GO:0046622 * Deleted synonym "stimulation of organ size" from GO:0046622 * Deleted synonym "up regulation of organ size" from GO:0046622 * Deleted synonym "up-regulation of organ size" from GO:0046622 * Deleted synonym "upregulation of organ size" from GO:0046622 * Created link GO:0070128 -OBO_REL:is_a-> GO:0070900 * Created link GO:0070128 -part_of-> GO:0070124 * Changed name of GO:0090061 from "regulation of cellular morphogenesis during vegetative growth" to "regulation of cell morphogenesis during vegetative growth" * Changed definition of GO:0090061 from "Any process that modulates the frequency, rate, or extent of cellular morphogenesis during vegetative growth. Cellular morphogenesis during vegetative growth is the change in form (cell shape and size) that occurs during the development of a cell as it progresses through a mitotic cell cycle when it is not undergoing terminal differentiation." to "Any process that modulates the frequency, rate, or extent of cellular morphogenesis during vegetative growth. Cell morphogenesis during vegetative growth is the change in cell shape that occurs during the vegetative growth phase. The vegetative growth phase is the growth phase during which single celled organisms reproduce by budding or other asexual methods." * Deleted GO:0090061 --OBO_REL:is_a--> GO:0001558 From gocvs at genome.stanford.edu Thu Sep 3 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 3 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/03/2009 Message-ID: <200909040430.n844UCwj005008@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.772 by 1.773 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070904 * [Changed name of GO:0070904 from "null" to "transepithelial L-ascorbic acid transport", Set definition of GO:0070904 to "The directed movement of L-ascorbic acid from one side of an epithelium to the other.", Added definition dbxref GOC:mah to GO:0070904, Added definition dbxref GOC:yaf to GO:0070904, Added synonym "transepithelial L-ascorbate transport" to GO:0070904, Added general dbxref GOC:mah to synonym transepithelial L-ascorbate transport of GO:0070904, Changed synonym scope of GO:0070904 from "Related" to "Exact", Added synonym "transepithelial vitamin C transport" to GO:0070904, Added general dbxref GOC:mah to synonym transepithelial vitamin C transport of GO:0070904, Changed synonym scope of GO:0070904 from "Related" to "Exact", Created link GO:0070904 -OBO_REL:is_a-> GO:0070633, Created link GO:0070904 -OBO_REL:is_a-> GO:0015882, Assigned namespace "biological_process" to GO:0070904] * Changed name of GO:0070904 from "null" to "transepithelial L-ascorbic acid transport" * Set definition of GO:0070904 to "The directed movement of L-ascorbic acid from one side of an epithelium to the other." * Added definition dbxref GOC:mah to GO:0070904 * Added definition dbxref GOC:yaf to GO:0070904 * Added synonym "transepithelial L-ascorbate transport" to GO:0070904 * Added general dbxref GOC:mah to synonym transepithelial L-ascorbate transport of GO:0070904 * Changed synonym scope of GO:0070904 from "Related" to "Exact" * Added synonym "transepithelial vitamin C transport" to GO:0070904 * Added general dbxref GOC:mah to synonym transepithelial vitamin C transport of GO:0070904 * Changed synonym scope of GO:0070904 from "Related" to "Exact" * Created link GO:0070904 -OBO_REL:is_a-> GO:0070633 * Created link GO:0070904 -OBO_REL:is_a-> GO:0015882 * Assigned namespace "biological_process" to GO:0070904 * Deleted GO:0005981 --OBO_REL:is_a--> GO:0032881 * Created link GO:0015225 -part_of-> GO:0015878 * Deleted GO:0015227 --OBO_REL:is_a--> GO:0015226 * Created link GO:0015227 -part_of-> GO:0006844 * Created link GO:0015227 -OBO_REL:is_a-> GO:0022891 * Created link GO:0015229 -part_of-> GO:0015882 * Created link GO:0015233 -part_of-> GO:0015887 * Created link GO:0015234 -part_of-> GO:0015888 * Created link GO:0015235 -part_of-> GO:0015889 * Created link GO:0031924 -part_of-> GO:0031919 * Created link GO:0031925 -part_of-> GO:0031920 * Created link GO:0031926 -part_of-> GO:0031921 * Created link GO:0031927 -part_of-> GO:0031922 * Created link GO:0031928 -part_of-> GO:0031923 * Created link GO:0032217 -part_of-> GO:0032218 * Added synonym "response to endotoxin" to GO:0032496 * Added general dbxref GOC:sl to synonym response to endotoxin of GO:0032496 * Changed synonym scope of GO:0032496 from "Related" to "Broad" * Created link GO:0033300 -part_of-> GO:0070837 * Created link GO:0034632 -part_of-> GO:0034633 * Deleted GO:0045719 --OBO_REL:is_a--> GO:0010677 * Deleted GO:0045725 --OBO_REL:is_a--> GO:0010676 * Deleted GO:0045818 --OBO_REL:is_a--> GO:0010677 * Deleted GO:0045819 --OBO_REL:is_a--> GO:0010676 * Deleted GO:0045898 --OBO_REL:is_a--> GO:0044087 * Deleted GO:0045898 --OBO_REL:is_a--> GO:0050794 * Created link GO:0051183 -part_of-> GO:0051180 * Deleted GO:0060261 --OBO_REL:is_a--> GO:0048522 * Deleted GO:0060261 --OBO_REL:is_a--> GO:0010604 * Deleted GO:0060633 --OBO_REL:is_a--> GO:0048523 * Deleted GO:0070837 --has_part--> GO:0033300 * Deleted GO:0070873 --OBO_REL:is_a--> GO:0060255 * Deleted GO:0070897 --part_of--> GO:0006367 * Created link GO:0070897 -part_of-> GO:0006352 * Deleted GO:0070898 --part_of--> GO:0006367 * Created link GO:0070898 -part_of-> GO:0006384 From gocvs at genome.stanford.edu Fri Sep 4 21:30:11 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 4 Sep 2009 21:30:11 -0700 Subject: [Go-diff] GO update 09/04/2009 Message-ID: <200909050430.n854UBfG001518@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.773 by 1.777 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0044164 * Created object of type obo:TERM with id GO:0044165 * Created object of type obo:TERM with id GO:0044166 * Created object of type obo:TERM with id GO:0044167 * Created object of type obo:TERM with id GO:0044168 * Created object of type obo:TERM with id GO:0044169 * Created object of type obo:TERM with id GO:0044170 * Created object of type obo:TERM with id GO:0044171 * Created object of type obo:TERM with id GO:0044172 * Created object of type obo:TERM with id GO:0044173 * Created object of type obo:TERM with id GO:0044174 * Created object of type obo:TERM with id GO:0044175 * Created object of type obo:TERM with id GO:0044176 * Created object of type obo:TERM with id GO:0044177 * Created object of type obo:TERM with id GO:0044178 * Created object of type obo:TERM with id GO:0044179 * Created object of type obo:TERM with id GO:0060907 * Created object of type obo:TERM with id GO:0060908 * Created object of type obo:TERM with id GO:0060909 * Created object of type obo:TERM with id GO:0060910 * Created object of type obo:TERM with id GO:0070905 * Created object of type obo:TERM with id GO:0070906 * Created object of type obo:TERM with id GO:0070907 * Created object of type obo:TERM with id GO:0070908 * Created object of type obo:TERM with id GO:0070909 * [Changed name of GO:0044164 from "null" to "host cell cytosol", Set definition of GO:0044164 to "The part of the host cell cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.", Added definition dbxref GOC:jl to GO:0044164, Added GO:0044164 to category gosubset_prok, Added synonym "host cytosol" to GO:0044164, Changed synonym scope of GO:0044164 from "Related" to "Exact", Created link GO:0044164 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044164] * Changed name of GO:0044164 from "null" to "host cell cytosol" * Set definition of GO:0044164 to "The part of the host cell cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes." * Added definition dbxref GOC:jl to GO:0044164 * Added GO:0044164 to category gosubset_prok * Added synonym "host cytosol" to GO:0044164 * Changed synonym scope of GO:0044164 from "Related" to "Exact" * Created link GO:0044164 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044164 * [Changed name of GO:0044165 from "null" to "host cell endoplasmic reticulum", Set definition of GO:0044165 to "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).", Added definition dbxref GOC:jl to GO:0044165, Added GO:0044165 to category gosubset_prok, Added synonym "host endoplasmic reticulum" to GO:0044165, Changed synonym scope of GO:0044165 from "Related" to "Exact", Created link GO:0044165 -OBO_REL:is_a-> GO:0033648, Created link GO:0044165 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044165] * Changed name of GO:0044165 from "null" to "host cell endoplasmic reticulum" * Set definition of GO:0044165 to "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." * Added definition dbxref GOC:jl to GO:0044165 * Added GO:0044165 to category gosubset_prok * Added synonym "host endoplasmic reticulum" to GO:0044165 * Changed synonym scope of GO:0044165 from "Related" to "Exact" * Created link GO:0044165 -OBO_REL:is_a-> GO:0033648 * Created link GO:0044165 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044165 * [Changed name of GO:0044166 from "null" to "host cell endoplasmic reticulum lumen", Set definition of GO:0044166 to "The volume enclosed by the membranes of the host cell endoplasmic reticulum.", Added definition dbxref GOC:jl to GO:0044166, Added GO:0044166 to category gosubset_prok, Added synonym "host endoplasmic reticulum lumen" to GO:0044166, Changed synonym scope of GO:0044166 from "Related" to "Exact", Created link GO:0044166 -OBO_REL:is_a-> GO:0033655, Created link GO:0044166 -part_of-> GO:0044165, Assigned namespace "cellular_component" to GO:0044166] * Changed name of GO:0044166 from "null" to "host cell endoplasmic reticulum lumen" * Set definition of GO:0044166 to "The volume enclosed by the membranes of the host cell endoplasmic reticulum." * Added definition dbxref GOC:jl to GO:0044166 * Added GO:0044166 to category gosubset_prok * Added synonym "host endoplasmic reticulum lumen" to GO:0044166 * Changed synonym scope of GO:0044166 from "Related" to "Exact" * Created link GO:0044166 -OBO_REL:is_a-> GO:0033655 * Created link GO:0044166 -part_of-> GO:0044165 * Assigned namespace "cellular_component" to GO:0044166 * [Changed name of GO:0044167 from "null" to "host cell endoplasmic reticulum membrane", Set definition of GO:0044167 to "The lipid bilayer surrounding the host cell endoplasmic reticulum.", Added definition dbxref GOC:jl to GO:0044167, Added GO:0044167 to category gosubset_prok, Added synonym "host endoplasmic reticulum membrane" to GO:0044167, Changed synonym scope of GO:0044167 from "Related" to "Exact", Created link GO:0044167 -part_of-> GO:0044165, Created link GO:0044167 -part_of-> GO:0033645, Created link GO:0044167 -OBO_REL:is_a-> GO:0033644, Assigned namespace "cellular_component" to GO:0044167] * Changed name of GO:0044167 from "null" to "host cell endoplasmic reticulum membrane" * Set definition of GO:0044167 to "The lipid bilayer surrounding the host cell endoplasmic reticulum." * Added definition dbxref GOC:jl to GO:0044167 * Added GO:0044167 to category gosubset_prok * Added synonym "host endoplasmic reticulum membrane" to GO:0044167 * Changed synonym scope of GO:0044167 from "Related" to "Exact" * Created link GO:0044167 -part_of-> GO:0044165 * Created link GO:0044167 -part_of-> GO:0033645 * Created link GO:0044167 -OBO_REL:is_a-> GO:0033644 * Assigned namespace "cellular_component" to GO:0044167 * [Changed name of GO:0044168 from "null" to "host cell rough endoplasmic reticulum", Set definition of GO:0044168 to "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host rough ER has ribosomes adhering to the outer surface.", Added definition dbxref GOC:jl to GO:0044168, Added GO:0044168 to category gosubset_prok, Added synonym "host rough endoplasmic reticulum" to GO:0044168, Changed synonym scope of GO:0044168 from "Related" to "Exact", Created link GO:0044168 -OBO_REL:is_a-> GO:0044165, Assigned namespace "cellular_component" to GO:0044168] * Changed name of GO:0044168 from "null" to "host cell rough endoplasmic reticulum" * Set definition of GO:0044168 to "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host rough ER has ribosomes adhering to the outer surface." * Added definition dbxref GOC:jl to GO:0044168 * Added GO:0044168 to category gosubset_prok * Added synonym "host rough endoplasmic reticulum" to GO:0044168 * Changed synonym scope of GO:0044168 from "Related" to "Exact" * Created link GO:0044168 -OBO_REL:is_a-> GO:0044165 * Assigned namespace "cellular_component" to GO:0044168 * [Changed name of GO:0044169 from "null" to "host cell rough endoplasmic reticulum membrane", Set definition of GO:0044169 to "The lipid bilayer surrounding the host cell rough endoplasmic reticulum.", Added definition dbxref GOC:jl to GO:0044169, Added GO:0044169 to category gosubset_prok, Added synonym "host rough endoplasmic reticulum membrane" to GO:0044169, Changed synonym scope of GO:0044169 from "Related" to "Exact", Created link GO:0044169 -part_of-> GO:0044168, Created link GO:0044169 -OBO_REL:is_a-> GO:0044167, Assigned namespace "cellular_component" to GO:0044169] * Changed name of GO:0044169 from "null" to "host cell rough endoplasmic reticulum membrane" * Set definition of GO:0044169 to "The lipid bilayer surrounding the host cell rough endoplasmic reticulum." * Added definition dbxref GOC:jl to GO:0044169 * Added GO:0044169 to category gosubset_prok * Added synonym "host rough endoplasmic reticulum membrane" to GO:0044169 * Changed synonym scope of GO:0044169 from "Related" to "Exact" * Created link GO:0044169 -part_of-> GO:0044168 * Created link GO:0044169 -OBO_REL:is_a-> GO:0044167 * Assigned namespace "cellular_component" to GO:0044169 * [Changed name of GO:0044170 from "null" to "host cell smooth endoplasmic reticulum", Set definition of GO:0044170 to "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host smooth ER has no ribosomes adhering to the outer surface.", Added definition dbxref GOC:jl to GO:0044170, Added GO:0044170 to category gosubset_prok, Added synonym "host smooth endoplasmic reticulum" to GO:0044170, Changed synonym scope of GO:0044170 from "Related" to "Exact", Created link GO:0044170 -OBO_REL:is_a-> GO:0044165, Assigned namespace "cellular_component" to GO:0044170] * Changed name of GO:0044170 from "null" to "host cell smooth endoplasmic reticulum" * Set definition of GO:0044170 to "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host smooth ER has no ribosomes adhering to the outer surface." * Added definition dbxref GOC:jl to GO:0044170 * Added GO:0044170 to category gosubset_prok * Added synonym "host smooth endoplasmic reticulum" to GO:0044170 * Changed synonym scope of GO:0044170 from "Related" to "Exact" * Created link GO:0044170 -OBO_REL:is_a-> GO:0044165 * Assigned namespace "cellular_component" to GO:0044170 * [Changed name of GO:0044171 from "null" to "host cell smooth endoplasmic reticulum membrane", Set definition of GO:0044171 to "The lipid bilayer surrounding the host cell smooth endoplasmic reticulum.", Added definition dbxref GOC:jl to GO:0044171, Added GO:0044171 to category gosubset_prok, Added synonym "host smooth endoplasmic reticulum membrane" to GO:0044171, Changed synonym scope of GO:0044171 from "Related" to "Exact", Created link GO:0044171 -OBO_REL:is_a-> GO:0044167, Created link GO:0044171 -part_of-> GO:0044170, Assigned namespace "cellular_component" to GO:0044171] * Changed name of GO:0044171 from "null" to "host cell smooth endoplasmic reticulum membrane" * Set definition of GO:0044171 to "The lipid bilayer surrounding the host cell smooth endoplasmic reticulum." * Added definition dbxref GOC:jl to GO:0044171 * Added GO:0044171 to category gosubset_prok * Added synonym "host smooth endoplasmic reticulum membrane" to GO:0044171 * Changed synonym scope of GO:0044171 from "Related" to "Exact" * Created link GO:0044171 -OBO_REL:is_a-> GO:0044167 * Created link GO:0044171 -part_of-> GO:0044170 * Assigned namespace "cellular_component" to GO:0044171 * [Changed name of GO:0044172 from "null" to "host cell endoplasmic reticulum-Golgi intermediate compartment", Set definition of GO:0044172 to "A complex system of membrane-bounded compartments located between host cell endoplasmic reticulum (ER) and the host Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport.", Added definition dbxref GOC:jl to GO:0044172, Added GO:0044172 to category gosubset_prok, Added synonym "host cell ER-Golgi intermediate compartment" to GO:0044172, Changed synonym scope of GO:0044172 from "Related" to "Exact", Added synonym "host ER-Golgi intermediate compartment" to GO:0044172, Changed synonym scope of GO:0044172 from "Related" to "Exact", Created link GO:0044172 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044172] * Changed name of GO:0044172 from "null" to "host cell endoplasmic reticulum-Golgi intermediate compartment" * Set definition of GO:0044172 to "A complex system of membrane-bounded compartments located between host cell endoplasmic reticulum (ER) and the host Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport." * Added definition dbxref GOC:jl to GO:0044172 * Added GO:0044172 to category gosubset_prok * Added synonym "host cell ER-Golgi intermediate compartment" to GO:0044172 * Changed synonym scope of GO:0044172 from "Related" to "Exact" * Added synonym "host ER-Golgi intermediate compartment" to GO:0044172 * Changed synonym scope of GO:0044172 from "Related" to "Exact" * Created link GO:0044172 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044172 * [Changed name of GO:0044173 from "null" to "host cell endoplasmic reticulum-Golgi intermediate compartment membrane", Set definition of GO:0044173 to "The lipid bilayer surrounding any of the compartments of the host cell ER-Golgi intermediate compartment system.", Added definition dbxref GOC:jl to GO:0044173, Added GO:0044173 to category gosubset_prok, Added synonym "host cell ER-Golgi intermediate compartment membrane" to GO:0044173, Changed synonym scope of GO:0044173 from "Related" to "Exact", Added synonym "host endoplasmic reticulum-Golgi intermediate compartment membrane" to GO:0044173, Changed synonym scope of GO:0044173 from "Related" to "Exact", Added synonym "host ER-Golgi intermediate compartment membrane" to GO:0044173, Changed synonym scope of GO:0044173 from "Related" to "Exact", Created link GO:0044173 -OBO_REL:is_a-> GO:0033644, Created link GO:0044173 -part_of-> GO:0044172, Assigned namespace "cellular_component" to GO:0044173] * Changed name of GO:0044173 from "null" to "host cell endoplasmic reticulum-Golgi intermediate compartment membrane" * Set definition of GO:0044173 to "The lipid bilayer surrounding any of the compartments of the host cell ER-Golgi intermediate compartment system." * Added definition dbxref GOC:jl to GO:0044173 * Added GO:0044173 to category gosubset_prok * Added synonym "host cell ER-Golgi intermediate compartment membrane" to GO:0044173 * Changed synonym scope of GO:0044173 from "Related" to "Exact" * Added synonym "host endoplasmic reticulum-Golgi intermediate compartment membrane" to GO:0044173 * Changed synonym scope of GO:0044173 from "Related" to "Exact" * Added synonym "host ER-Golgi intermediate compartment membrane" to GO:0044173 * Changed synonym scope of GO:0044173 from "Related" to "Exact" * Created link GO:0044173 -OBO_REL:is_a-> GO:0033644 * Created link GO:0044173 -part_of-> GO:0044172 * Assigned namespace "cellular_component" to GO:0044173 * [Changed name of GO:0044174 from "null" to "host cell endosome", Set definition of GO:0044174 to "A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.", Added definition dbxref GOC:jl to GO:0044174, Added GO:0044174 to category gosubset_prok, Added synonym "host endosome" to GO:0044174, Changed synonym scope of GO:0044174 from "Related" to "Exact", Created link GO:0044174 -OBO_REL:is_a-> GO:0033648, Created link GO:0044174 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044174] * Changed name of GO:0044174 from "null" to "host cell endosome" * Set definition of GO:0044174 to "A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation." * Added definition dbxref GOC:jl to GO:0044174 * Added GO:0044174 to category gosubset_prok * Added synonym "host endosome" to GO:0044174 * Changed synonym scope of GO:0044174 from "Related" to "Exact" * Created link GO:0044174 -OBO_REL:is_a-> GO:0033648 * Created link GO:0044174 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044174 * [Changed name of GO:0044175 from "null" to "host cell endosome membrane", Set definition of GO:0044175 to "The lipid bilayer surrounding a host cell endosome.", Added definition dbxref GOC:jl to GO:0044175, Added synonym "host endosome membrane" to GO:0044175, Changed synonym scope of GO:0044175 from "Related" to "Exact", Created link GO:0044175 -OBO_REL:is_a-> GO:0033644, Created link GO:0044175 -part_of-> GO:0044174, Assigned namespace "cellular_component" to GO:0044175] * Changed name of GO:0044175 from "null" to "host cell endosome membrane" * Set definition of GO:0044175 to "The lipid bilayer surrounding a host cell endosome." * Added definition dbxref GOC:jl to GO:0044175 * Added synonym "host endosome membrane" to GO:0044175 * Changed synonym scope of GO:0044175 from "Related" to "Exact" * Created link GO:0044175 -OBO_REL:is_a-> GO:0033644 * Created link GO:0044175 -part_of-> GO:0044174 * Assigned namespace "cellular_component" to GO:0044175 * [Changed name of GO:0044176 from "null" to "host cell filopodium", Set definition of GO:0044176 to "Thin, stiff protrusion extended by the leading edge of a motile host cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward.", Added definition dbxref GOC:jl to GO:0044176, Added GO:0044176 to category gosubset_prok, Added synonym "host filopodium" to GO:0044176, Changed synonym scope of GO:0044176 from "Related" to "Exact", Created link GO:0044176 -OBO_REL:is_a-> GO:0044157, Assigned namespace "cellular_component" to GO:0044176] * Changed name of GO:0044176 from "null" to "host cell filopodium" * Set definition of GO:0044176 to "Thin, stiff protrusion extended by the leading edge of a motile host cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward." * Added definition dbxref GOC:jl to GO:0044176 * Added GO:0044176 to category gosubset_prok * Added synonym "host filopodium" to GO:0044176 * Changed synonym scope of GO:0044176 from "Related" to "Exact" * Created link GO:0044176 -OBO_REL:is_a-> GO:0044157 * Assigned namespace "cellular_component" to GO:0044176 * [Changed name of GO:0044177 from "null" to "host cell Golgi apparatus", Set definition of GO:0044177 to "A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.", Added definition dbxref GOC:jl to GO:0044177, Added GO:0044177 to category gosubset_prok, Added synonym "host Golgi apparatus" to GO:0044177, Changed synonym scope of GO:0044177 from "Related" to "Exact", Created link GO:0044177 -OBO_REL:is_a-> GO:0033655, Assigned namespace "cellular_component" to GO:0044177] * Changed name of GO:0044177 from "null" to "host cell Golgi apparatus" * Set definition of GO:0044177 to "A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack." * Added definition dbxref GOC:jl to GO:0044177 * Added GO:0044177 to category gosubset_prok * Added synonym "host Golgi apparatus" to GO:0044177 * Changed synonym scope of GO:0044177 from "Related" to "Exact" * Created link GO:0044177 -OBO_REL:is_a-> GO:0033655 * Assigned namespace "cellular_component" to GO:0044177 * [Changed name of GO:0044178 from "null" to "host cell Golgi membrane", Set definition of GO:0044178 to "The lipid bilayer surrounding any of the compartments of the host cell Golgi apparatus.", Added definition dbxref GOC:jl to GO:0044178, Added GO:0044178 to category gosubset_prok, Added synonym "host Golgi membrane" to GO:0044178, Changed synonym scope of GO:0044178 from "Related" to "Exact", Created link GO:0044178 -part_of-> GO:0044177, Created link GO:0044178 -OBO_REL:is_a-> GO:0033644, Created link GO:0044178 -part_of-> GO:0033645, Assigned namespace "cellular_component" to GO:0044178] * Changed name of GO:0044178 from "null" to "host cell Golgi membrane" * Set definition of GO:0044178 to "The lipid bilayer surrounding any of the compartments of the host cell Golgi apparatus." * Added definition dbxref GOC:jl to GO:0044178 * Added GO:0044178 to category gosubset_prok * Added synonym "host Golgi membrane" to GO:0044178 * Changed synonym scope of GO:0044178 from "Related" to "Exact" * Created link GO:0044178 -part_of-> GO:0044177 * Created link GO:0044178 -OBO_REL:is_a-> GO:0033644 * Created link GO:0044178 -part_of-> GO:0033645 * Assigned namespace "cellular_component" to GO:0044178 * [Changed name of GO:0044179 from "null" to "hemolysis of cells in other organism", Set definition of GO:0044179 to "The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.", Added definition dbxref GOC:jl to GO:0044179, Added GO:0044179 to category gosubset_prok, Added synonym "hemolysis of erythrocytes in other organism" to GO:0044179, Changed synonym scope of GO:0044179 from "Related" to "Exact", Added synonym "hemolysis of RBCs in other organism" to GO:0044179, Changed synonym scope of GO:0044179 from "Related" to "Exact", Added synonym "hemolysis of red blood cells in other organism" to GO:0044179, Changed synonym scope of GO:0044179 from "Related" to "Exact", Created link GO:0044179 -OBO_REL:is_a-> GO:0051715, Assigned namespace "biological_process" to GO:0044179] * Changed name of GO:0044179 from "null" to "hemolysis of cells in other organism" * Set definition of GO:0044179 to "The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another." * Added definition dbxref GOC:jl to GO:0044179 * Added GO:0044179 to category gosubset_prok * Added synonym "hemolysis of erythrocytes in other organism" to GO:0044179 * Changed synonym scope of GO:0044179 from "Related" to "Exact" * Added synonym "hemolysis of RBCs in other organism" to GO:0044179 * Changed synonym scope of GO:0044179 from "Related" to "Exact" * Added synonym "hemolysis of red blood cells in other organism" to GO:0044179 * Changed synonym scope of GO:0044179 from "Related" to "Exact" * Created link GO:0044179 -OBO_REL:is_a-> GO:0051715 * Assigned namespace "biological_process" to GO:0044179 * [Changed name of GO:0060907 from "null" to "positive regulation of macrophage cytokine production", Set definition of GO:0060907 to "Any process that increases the rate, frequency or extent of macrophage cytokine production. Macrophage cytokine production is the appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.", Added definition dbxref GOC:dph to GO:0060907, Added definition dbxref GOC:tb to GO:0060907, Created link GO:0060907 -OBO_REL:is_a-> GO:0010935, Created link GO:0060907 -OBO_REL:is_a-> GO:0001819, Assigned namespace "biological_process" to GO:0060907] * Changed name of GO:0060907 from "null" to "positive regulation of macrophage cytokine production" * Set definition of GO:0060907 to "Any process that increases the rate, frequency or extent of macrophage cytokine production. Macrophage cytokine production is the appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." * Added definition dbxref GOC:dph to GO:0060907 * Added definition dbxref GOC:tb to GO:0060907 * Created link GO:0060907 -OBO_REL:is_a-> GO:0010935 * Created link GO:0060907 -OBO_REL:is_a-> GO:0001819 * Assigned namespace "biological_process" to GO:0060907 * [Changed name of GO:0060908 from "null" to "plasmid copy number maintenance", Set definition of GO:0060908 to "The maintenance of the number of copies of extrachromosomal plasmid DNA.", Added definition dbxref GOC:dph to GO:0060908, Added definition dbxref GOC:tb to GO:0060908, Created link GO:0060908 -OBO_REL:is_a-> GO:0006276, Assigned namespace "biological_process" to GO:0060908] * Changed name of GO:0060908 from "null" to "plasmid copy number maintenance" * Set definition of GO:0060908 to "The maintenance of the number of copies of extrachromosomal plasmid DNA." * Added definition dbxref GOC:dph to GO:0060908 * Added definition dbxref GOC:tb to GO:0060908 * Created link GO:0060908 -OBO_REL:is_a-> GO:0006276 * Assigned namespace "biological_process" to GO:0060908 * [Changed name of GO:0060909 from "null" to "regulation of DNA replication initiation involved in plasmid copy number maintenance", Set definition of GO:0060909 to "Any process that modulates the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance.", Added definition dbxref GOC:dph to GO:0060909, Added definition dbxref GOC:tb to GO:0060909, Created link GO:0060909 -OBO_REL:is_a-> GO:0030174, Created link GO:0060909 -part_of-> GO:0060908, Assigned namespace "biological_process" to GO:0060909] * Changed name of GO:0060909 from "null" to "regulation of DNA replication initiation involved in plasmid copy number maintenance" * Set definition of GO:0060909 to "Any process that modulates the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance." * Added definition dbxref GOC:dph to GO:0060909 * Added definition dbxref GOC:tb to GO:0060909 * Created link GO:0060909 -OBO_REL:is_a-> GO:0030174 * Created link GO:0060909 -part_of-> GO:0060908 * Assigned namespace "biological_process" to GO:0060909 * [Changed name of GO:0060910 from "null" to "negative regulation of DNA replication initiation involved in plasmid copy number maintenance", Set definition of GO:0060910 to "Any process that decreases the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance.", Added definition dbxref GOC:dph to GO:0060910, Added definition dbxref GOC:tb to GO:0060910, Created link GO:0060910 -OBO_REL:is_a-> GO:0060909, Created link GO:0060910 -OBO_REL:is_a-> GO:0032297, Assigned namespace "biological_process" to GO:0060910] * Changed name of GO:0060910 from "null" to "negative regulation of DNA replication initiation involved in plasmid copy number maintenance" * Set definition of GO:0060910 to "Any process that decreases the frequency, rate or extent of initiation of plasmid DNA replication that contributes to copy number maintenance." * Added definition dbxref GOC:dph to GO:0060910 * Added definition dbxref GOC:tb to GO:0060910 * Created link GO:0060910 -OBO_REL:is_a-> GO:0060909 * Created link GO:0060910 -OBO_REL:is_a-> GO:0032297 * Assigned namespace "biological_process" to GO:0060910 * [Changed name of GO:0070905 from "null" to "serine binding", Set definition of GO:0070905 to "Interacting selectively and non-covalently with 2-amino-3-hydroxypropanoic acid.", Added definition dbxref ChEBI:17822 to GO:0070905, Added definition dbxref GOC:rph to GO:0070905, Added synonym "Ser binding" to GO:0070905, Added general dbxref GOC:mah to synonym Ser binding of GO:0070905, Changed synonym scope of GO:0070905 from "Related" to "Exact", Created link GO:0070905 -OBO_REL:is_a-> GO:0016597, Assigned namespace "molecular_function" to GO:0070905] * Changed name of GO:0070905 from "null" to "serine binding" * Set definition of GO:0070905 to "Interacting selectively and non-covalently with 2-amino-3-hydroxypropanoic acid." * Added definition dbxref ChEBI:17822 to GO:0070905 * Added definition dbxref GOC:rph to GO:0070905 * Added synonym "Ser binding" to GO:0070905 * Added general dbxref GOC:mah to synonym Ser binding of GO:0070905 * Changed synonym scope of GO:0070905 from "Related" to "Exact" * Created link GO:0070905 -OBO_REL:is_a-> GO:0016597 * Assigned namespace "molecular_function" to GO:0070905 * [Changed name of GO:0070906 from "null" to "aspartate:alanine antiporter activity", Set definition of GO:0070906 to "Catalysis of the reaction: aspartate(out) + alanine(in) = aspartate(in) + alanine(out).", Added definition dbxref GOC:dh to GO:0070906, Added synonym "aspartate-alanine antiporter activity" to GO:0070906, Added general dbxref GOC:mah to synonym aspartate-alanine antiporter activity of GO:0070906, Changed synonym scope of GO:0070906 from "Related" to "Exact", Added synonym "aspartate/alanine antiporter activity" to GO:0070906, Added general dbxref GOC:mah to synonym aspartate/alanine antiporter activity of GO:0070906, Changed synonym scope of GO:0070906 from "Related" to "Exact", Created link GO:0070906 -OBO_REL:is_a-> GO:0015300, Assigned namespace "molecular_function" to GO:0070906] * Changed name of GO:0070906 from "null" to "aspartate:alanine antiporter activity" * Set definition of GO:0070906 to "Catalysis of the reaction: aspartate(out) + alanine(in) = aspartate(in) + alanine(out)." * Added definition dbxref GOC:dh to GO:0070906 * Added synonym "aspartate-alanine antiporter activity" to GO:0070906 * Added general dbxref GOC:mah to synonym aspartate-alanine antiporter activity of GO:0070906 * Changed synonym scope of GO:0070906 from "Related" to "Exact" * Added synonym "aspartate/alanine antiporter activity" to GO:0070906 * Added general dbxref GOC:mah to synonym aspartate/alanine antiporter activity of GO:0070906 * Changed synonym scope of GO:0070906 from "Related" to "Exact" * Created link GO:0070906 -OBO_REL:is_a-> GO:0015300 * Assigned namespace "molecular_function" to GO:0070906 * [Changed name of GO:0070907 from "null" to "histidine:histamine antiporter activity", Set definition of GO:0070907 to "Catalysis of the reaction: histidine(out) + histamine(in) = histidine(in) + histamine(out).", Added definition dbxref GOC:dh to GO:0070907, Added synonym "histidine-histamine antiporter activity" to GO:0070907, Added general dbxref GOC:mah to synonym histidine-histamine antiporter activity of GO:0070907, Changed synonym scope of GO:0070907 from "Related" to "Exact", Added synonym "histidine/histamine antiporter activity" to GO:0070907, Added general dbxref GOC:mah to synonym histidine/histamine antiporter activity of GO:0070907, Changed synonym scope of GO:0070907 from "Related" to "Exact", Created link GO:0070907 -OBO_REL:is_a-> GO:0015300, Assigned namespace "molecular_function" to GO:0070907] * Changed name of GO:0070907 from "null" to "histidine:histamine antiporter activity" * Set definition of GO:0070907 to "Catalysis of the reaction: histidine(out) + histamine(in) = histidine(in) + histamine(out)." * Added definition dbxref GOC:dh to GO:0070907 * Added synonym "histidine-histamine antiporter activity" to GO:0070907 * Added general dbxref GOC:mah to synonym histidine-histamine antiporter activity of GO:0070907 * Changed synonym scope of GO:0070907 from "Related" to "Exact" * Added synonym "histidine/histamine antiporter activity" to GO:0070907 * Added general dbxref GOC:mah to synonym histidine/histamine antiporter activity of GO:0070907 * Changed synonym scope of GO:0070907 from "Related" to "Exact" * Created link GO:0070907 -OBO_REL:is_a-> GO:0015300 * Assigned namespace "molecular_function" to GO:0070907 * [Changed name of GO:0070908 from "null" to "tyrosine:tyramine antiporter activity", Set definition of GO:0070908 to "Catalysis of the reaction: tyrosine(out) + tyramine(in) = tyrosine(in) + tyramine(out).", Added definition dbxref GOC:dh to GO:0070908, Added synonym "tyrosine-tyramine antiporter activity" to GO:0070908, Added general dbxref GOC:mah to synonym tyrosine-tyramine antiporter activity of GO:0070908, Changed synonym scope of GO:0070908 from "Related" to "Exact", Added synonym "tyrosine/tyramine antiporter activity" to GO:0070908, Added general dbxref GOC:mah to synonym tyrosine/tyramine antiporter activity of GO:0070908, Changed synonym scope of GO:0070908 from "Related" to "Exact", Created link GO:0070908 -OBO_REL:is_a-> GO:0015300, Assigned namespace "molecular_function" to GO:0070908] * Changed name of GO:0070908 from "null" to "tyrosine:tyramine antiporter activity" * Set definition of GO:0070908 to "Catalysis of the reaction: tyrosine(out) + tyramine(in) = tyrosine(in) + tyramine(out)." * Added definition dbxref GOC:dh to GO:0070908 * Added synonym "tyrosine-tyramine antiporter activity" to GO:0070908 * Added general dbxref GOC:mah to synonym tyrosine-tyramine antiporter activity of GO:0070908 * Changed synonym scope of GO:0070908 from "Related" to "Exact" * Added synonym "tyrosine/tyramine antiporter activity" to GO:0070908 * Added general dbxref GOC:mah to synonym tyrosine/tyramine antiporter activity of GO:0070908 * Changed synonym scope of GO:0070908 from "Related" to "Exact" * Created link GO:0070908 -OBO_REL:is_a-> GO:0015300 * Assigned namespace "molecular_function" to GO:0070908 * [Changed name of GO:0070909 from "null" to "glutamate:gamma-aminobutyric acid antiporter activity", Set definition of GO:0070909 to "Catalysis of the reaction: tyrosine(out) + tyramine(in) = tyrosine(in) + tyramine(out).", Added definition dbxref GOC:dh to GO:0070909, Added synonym "glutamate-gamma-aminobutyric acid antiporter activity" to GO:0070909, Added general dbxref GOC:mah to synonym glutamate-gamma-aminobutyric acid antiporter activity of GO:0070909, Changed synonym scope of GO:0070909 from "Related" to "Exact", Added synonym "glutamate/gamma-aminobutyric acid antiporter activity" to GO:0070909, Added general dbxref GOC:mah to synonym glutamate/gamma-aminobutyric acid antiporter activity of GO:0070909, Changed synonym scope of GO:0070909 from "Related" to "Exact", Added synonym "glutamate: GABA antiporter activity" to GO:0070909, Added general dbxref GOC:dh to synonym glutamate: GABA antiporter activity of GO:0070909, Changed synonym scope of GO:0070909 from "Related" to "Exact", Created link GO:0070909 -OBO_REL:is_a-> GO:0015300, Assigned namespace "molecular_function" to GO:0070909] * Changed name of GO:0070909 from "null" to "glutamate:gamma-aminobutyric acid antiporter activity" * Set definition of GO:0070909 to "Catalysis of the reaction: tyrosine(out) + tyramine(in) = tyrosine(in) + tyramine(out)." * Added definition dbxref GOC:dh to GO:0070909 * Added synonym "glutamate-gamma-aminobutyric acid antiporter activity" to GO:0070909 * Added general dbxref GOC:mah to synonym glutamate-gamma-aminobutyric acid antiporter activity of GO:0070909 * Changed synonym scope of GO:0070909 from "Related" to "Exact" * Added synonym "glutamate/gamma-aminobutyric acid antiporter activity" to GO:0070909 * Added general dbxref GOC:mah to synonym glutamate/gamma-aminobutyric acid antiporter activity of GO:0070909 * Changed synonym scope of GO:0070909 from "Related" to "Exact" * Added synonym "glutamate: GABA antiporter activity" to GO:0070909 * Added general dbxref GOC:dh to synonym glutamate: GABA antiporter activity of GO:0070909 * Changed synonym scope of GO:0070909 from "Related" to "Exact" * Created link GO:0070909 -OBO_REL:is_a-> GO:0015300 * Assigned namespace "molecular_function" to GO:0070909 * Deleted GO:0000768 --OBO_REL:is_a--> GO:0045026 * Created link GO:0000768 -has_part-> GO:0045026 * Created link GO:0000769 -has_part-> GO:0033301 * Removed GO:0005975 from category goslim_yeast * Removed GO:0006629 from category goslim_yeast * Removed GO:0006996 from category goslim_yeast * Added GO:0007005 to category goslim_yeast * Added GO:0007031 to category goslim_yeast * Added GO:0007033 to category goslim_yeast * Added GO:0007059 to category goslim_yeast * Removed GO:0009653 from category goslim_yeast * Deleted GO:0009987 --disjoint_from--> GO:0051704 * Added GO:0010279 to category gosubset_prok * Added GO:0010467 to category gosubset_prok * Destroyed object GO:0015497 * Added GO:0015772 to category gosubset_prok * Added GO:0015850 to category gosubset_prok * Added GO:0016050 to category goslim_yeast * Added GO:0019144 to category gosubset_prok * Added GO:0022904 to category gosubset_prok * Removed GO:0030163 from category goslim_yeast * Deleted GO:0032501 --disjoint_from--> GO:0009987 * Deleted GO:0032501 --disjoint_from--> GO:0051704 * Added GO:0032535 to category gosubset_prok * Added GO:0032989 to category goslim_yeast * Added GO:0033073 to category gosubset_prok * Created link GO:0042025 -OBO_REL:is_a-> GO:0033646 * Added GO:0043436 to category gosubset_prok * Removed comment * added secondary id GO:0015497 to GO:0043872 * Deleted definition dbxref UniProtKB:P0AAF0 from GO:0043872 * Added definition dbxref TC:2.A.3.2.2 to GO:0043872 * Added synonym "cadaverine:lysine antiporter activity" to GO:0043872 * Changed synonym scope of GO:0043872 from "Related" to "Exact" * Created link GO:0043872 -OBO_REL:is_a-> GO:0015490 * Created link GO:0043872 -OBO_REL:is_a-> GO:0015189 * Added GO:0044042 to category gosubset_prok * Added GO:0044055 to category gosubset_prok * Added GO:0044085 to category gosubset_prok * Added GO:0044157 to category gosubset_prok * Added GO:0044255 to category goslim_yeast * Added GO:0044257 to category goslim_yeast * Added GO:0044262 to category goslim_yeast * Added GO:0047635 to category gosubset_prok * Created link GO:0048102 -has_part-> GO:0016236 * Added GO:0051276 to category goslim_yeast * Added GO:0051604 to category gosubset_prok * Added GO:0052228 to category gosubset_prok * Changed name of GO:0052331 from "hemolysis by organism of erythrocytes in other organism during symbiotic interaction" to "hemolysis of cells in other organism during symbiotic interaction" * Added synonym "hemolysis by organism of erythrocytes in other organism during symbiotic interaction" to GO:0052331 * Changed synonym scope of GO:0052331 from "Related" to "Exact" * Created link GO:0052331 -OBO_REL:is_a-> GO:0044179 * Added GO:0052418 to category gosubset_prok * Added GO:0070271 to category goslim_yeast * Added GO:0070547 to category gosubset_prok * Added GO:0070566 to category gosubset_prok * Added GO:0070567 to category gosubset_prok * Added GO:0070568 to category gosubset_prok * Added GO:0070569 to category gosubset_prok * Added GO:0070838 to category gosubset_prok * Created link GO:0070863 -OBO_REL:is_a-> GO:0032388 * Added GO:0070879 to category gosubset_prok * Added GO:0070882 to category gosubset_prok * Created link GO:0070894 -OBO_REL:is_a-> GO:0051052 * Created link GO:0070895 -OBO_REL:is_a-> GO:0051053 * Created link GO:0070896 -OBO_REL:is_a-> GO:0051054 * Added GO:0075345 to category gosubset_prok * Added GO:0090066 to category gosubset_prok From gocvs at genome.stanford.edu Tue Sep 8 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 8 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/08/2009 Message-ID: <200909090430.n894UCZT008805@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.777 by 1.779 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created namespace file:/data/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo * Deleted GO:0001325 --OBO_REL:is_a--> GO:0010926 * Created link GO:0001325 -OBO_REL:is_a-> GO:0022607 * Created link GO:0006094 -OBO_REL:is_a-> GO:0034637 * Created link GO:0006096 -OBO_REL:is_a-> GO:0044275 * Created link GO:0006098 -OBO_REL:is_a-> GO:0044275 * Deleted GO:0009394 --OBO_REL:is_a--> GO:0019692 * Changed name of GO:0010551 from "regulation of specific transcription from RNA polymerase II promoter" to "regulation of gene-specific transcription from RNA polymerase II promoter" * Changed name of GO:0010552 from "positive regulation of specific transcription from RNA polymerase II promoter" to "positive regulation of gene-specific transcription from RNA polymerase II promoter" * Changed name of GO:0010553 from "negative regulation of specific transcription from RNA polymerase II promoter" to "negative regulation of gene-specific transcription from RNA polymerase II promoter" * Created link GO:0030435 -OBO_REL:is_a-> GO:0048646 * Deleted GO:0031321 --OBO_REL:is_a--> GO:0010926 * Changed name of GO:0032569 from "specific transcription from RNA polymerase II promoter" to "gene-specific transcription from RNA polymerase II promoter" * Added synonym "specific transcription from RNA polymerase II promoter" to GO:0032569 * Added general dbxref GOC:mah to synonym specific transcription from RNA polymerase II promoter of GO:0032569 * Changed synonym scope of GO:0032569 from "Related" to "Exact" * Changed definition of GO:0046488 from "The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol." to "The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol." From gocvs at genome.stanford.edu Wed Sep 9 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 9 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/09/2009 Message-ID: <200909100430.n8A4UCWU031096@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.779 by 1.782 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Removed namespace file:/data/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo * Created object of type obo:TERM with id GO:0070910 * Created object of type obo:TERM with id GO:0070911 * Created object of type obo:TERM with id GO:0070912 * Created object of type obo:TERM with id GO:0070913 * Created object of type obo:TERM with id GO:0090068 * [Changed name of GO:0070910 from "null" to "cell wall macromolecule catabolic process involved in cell wall disassembly", Set definition of GO:0070910 to "The chemical reactions and pathways that result in the breakdown of macromolecules that form part of a cell wall, and contributes to the breakdown of the cell wall.", Added definition dbxref GOC:mah to GO:0070910, Created link GO:0070910 -OBO_REL:is_a-> GO:0016998, Created link GO:0070910 -part_of-> GO:0060871, Assigned namespace "biological_process" to GO:0070910] * Changed name of GO:0070910 from "null" to "cell wall macromolecule catabolic process involved in cell wall disassembly" * Set definition of GO:0070910 to "The chemical reactions and pathways that result in the breakdown of macromolecules that form part of a cell wall, and contributes to the breakdown of the cell wall." * Added definition dbxref GOC:mah to GO:0070910 * Created link GO:0070910 -OBO_REL:is_a-> GO:0016998 * Created link GO:0070910 -part_of-> GO:0060871 * Assigned namespace "biological_process" to GO:0070910 * [Changed name of GO:0070911 from "null" to "global genome nucleotide-excision repair", Set definition of GO:0070911 to "The nucleotide-excision repair process by which DNA lesions are removed from nontranscribed strands and from transcriptionally silent regions over the entire genome.", Added definition dbxref PMID:10197977 to GO:0070911, Added definition dbxref PMID:18794354 to GO:0070911, Added GO:0070911 to category gosubset_prok, Added synonym "GG-NER" to GO:0070911, Added general dbxref PMID:10197977 to synonym GG-NER of GO:0070911, Changed synonym scope of GO:0070911 from "Related" to "Exact", Added synonym "GGR" to GO:0070911, Added general dbxref PMID:18794354 to synonym GGR of GO:0070911, Added general dbxref GOC:vw to synonym GGR of GO:0070911, Changed synonym scope of GO:0070911 from "Related" to "Exact", Added synonym "global genome NER" to GO:0070911, Added general dbxref GOC:mah to synonym global genome NER of GO:0070911, Changed synonym scope of GO:0070911 from "Related" to "Exact", Added synonym "global genomic nucleotide-excision repair" to GO:0070911, Added general dbxref GOC:mah to synonym global genomic nucleotide-excision repair of GO:0070911, Added general dbxref GOC:vw to synonym global genomic nucleotide-excision repair of GO:0070911, Changed synonym scope of GO:0070911 from "Related" to "Exact", Added synonym "global genomic repair" to GO:0070911, Added general dbxref PMID:18794354 to synonym global genomic repair of GO:0070911, Added general dbxref GOC:vw to synonym global genomic repair of GO:0070911, Changed synonym scope of GO:0070911 from "Related" to "Exact", Created link GO:0070911 -OBO_REL:is_a-> GO:0006289, Assigned namespace "biological_process" to GO:0070911] * Changed name of GO:0070911 from "null" to "global genome nucleotide-excision repair" * Set definition of GO:0070911 to "The nucleotide-excision repair process by which DNA lesions are removed from nontranscribed strands and from transcriptionally silent regions over the entire genome." * Added definition dbxref PMID:10197977 to GO:0070911 * Added definition dbxref PMID:18794354 to GO:0070911 * Added GO:0070911 to category gosubset_prok * Added synonym "GG-NER" to GO:0070911 * Added general dbxref PMID:10197977 to synonym GG-NER of GO:0070911 * Changed synonym scope of GO:0070911 from "Related" to "Exact" * Added synonym "GGR" to GO:0070911 * Added general dbxref PMID:18794354 to synonym GGR of GO:0070911 * Added general dbxref GOC:vw to synonym GGR of GO:0070911 * Changed synonym scope of GO:0070911 from "Related" to "Exact" * Added synonym "global genome NER" to GO:0070911 * Added general dbxref GOC:mah to synonym global genome NER of GO:0070911 * Changed synonym scope of GO:0070911 from "Related" to "Exact" * Added synonym "global genomic nucleotide-excision repair" to GO:0070911 * Added general dbxref GOC:mah to synonym global genomic nucleotide-excision repair of GO:0070911 * Added general dbxref GOC:vw to synonym global genomic nucleotide-excision repair of GO:0070911 * Changed synonym scope of GO:0070911 from "Related" to "Exact" * Added synonym "global genomic repair" to GO:0070911 * Added general dbxref PMID:18794354 to synonym global genomic repair of GO:0070911 * Added general dbxref GOC:vw to synonym global genomic repair of GO:0070911 * Changed synonym scope of GO:0070911 from "Related" to "Exact" * Created link GO:0070911 -OBO_REL:is_a-> GO:0006289 * Assigned namespace "biological_process" to GO:0070911 * [Changed name of GO:0070912 from "null" to "Ddb1-Ckn1 complex", Set definition of GO:0070912 to "A heterodimeric nucleotide-excision repair complex that is involved in transcription-coupled repair. The subunits are known as Ddb1 and Ckn1 in S. pombe; Ddb1 contains a motif called the DDB-box that interacts with adaptor proteins for DDB1/cullin 4 ubiquitin ligases.", Added definition dbxref PMID:18794354 to GO:0070912, Created link GO:0070912 -OBO_REL:is_a-> GO:0000109, Assigned namespace "cellular_component" to GO:0070912] * Changed name of GO:0070912 from "null" to "Ddb1-Ckn1 complex" * Set definition of GO:0070912 to "A heterodimeric nucleotide-excision repair complex that is involved in transcription-coupled repair. The subunits are known as Ddb1 and Ckn1 in S. pombe; Ddb1 contains a motif called the DDB-box that interacts with adaptor proteins for DDB1/cullin 4 ubiquitin ligases." * Added definition dbxref PMID:18794354 to GO:0070912 * Created link GO:0070912 -OBO_REL:is_a-> GO:0000109 * Assigned namespace "cellular_component" to GO:0070912 * [Changed name of GO:0070913 from "null" to "Ddb1-Wdr21 complex", Set definition of GO:0070913 to "A heterodimeric nucleotide-excision repair complex that is involved in transcription-coupled repair. The subunits are known as Ddb1 and Wdr21 in S. pombe; Ddb1 contains a motif called the DDB-box that interacts with adaptor proteins for DDB1/cullin 4 ubiquitin ligases.", Added definition dbxref PMID:18794354 to GO:0070913, Created link GO:0070913 -OBO_REL:is_a-> GO:0000109, Assigned namespace "cellular_component" to GO:0070913] * Changed name of GO:0070913 from "null" to "Ddb1-Wdr21 complex" * Set definition of GO:0070913 to "A heterodimeric nucleotide-excision repair complex that is involved in transcription-coupled repair. The subunits are known as Ddb1 and Wdr21 in S. pombe; Ddb1 contains a motif called the DDB-box that interacts with adaptor proteins for DDB1/cullin 4 ubiquitin ligases." * Added definition dbxref PMID:18794354 to GO:0070913 * Created link GO:0070913 -OBO_REL:is_a-> GO:0000109 * Assigned namespace "cellular_component" to GO:0070913 * [Changed name of GO:0090068 from "null" to "positive regulation of cell cycle process", Set definition of GO:0090068 to "Any process that increases the rate, frequency or extent of a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events.", Added definition dbxref GOC:dph to GO:0090068, Added definition dbxref GOC:tb to GO:0090068, Created link GO:0090068 -OBO_REL:is_a-> GO:0010564, Assigned namespace "biological_process" to GO:0090068] * Changed name of GO:0090068 from "null" to "positive regulation of cell cycle process" * Set definition of GO:0090068 to "Any process that increases the rate, frequency or extent of a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events." * Added definition dbxref GOC:dph to GO:0090068 * Added definition dbxref GOC:tb to GO:0090068 * Created link GO:0090068 -OBO_REL:is_a-> GO:0010564 * Assigned namespace "biological_process" to GO:0090068 * Deleted GO:0001100 --OBO_REL:is_a--> GO:0045839 * Created link GO:0001100 -OBO_REL:is_a-> GO:0010948 * Changed definition of GO:0001919 from "Any process that modulates the frequency, rate, or extent of receptor recyling." to "Any process that modulates the frequency, rate, or extent of receptor recycling." * Deleted GO:0001919 --OBO_REL:is_a--> GO:0032268 * Created link GO:0001919 -OBO_REL:is_a-> GO:0060255 * Changed definition of GO:0001920 from "Any process that stops, prevents, or reduces the rate of receptor recyling." to "Any process that stops, prevents, or reduces the rate of receptor recycling." * Deleted GO:0001920 --OBO_REL:is_a--> GO:0032269 * Created link GO:0001920 -OBO_REL:is_a-> GO:0010605 * Changed definition of GO:0001921 from "Any process that activates or increases the frequency, rate or extent of receptor recyling." to "Any process that activates or increases the frequency, rate or extent of receptor recycling." * Deleted GO:0001921 --OBO_REL:is_a--> GO:0032270 * Created link GO:0001921 -OBO_REL:is_a-> GO:0010604 * Deleted GO:0001969 --OBO_REL:is_a--> GO:0042268 * Deleted GO:0001970 --OBO_REL:is_a--> GO:0045919 * Deleted GO:0001971 --OBO_REL:is_a--> GO:0045918 * Deleted GO:0002085 --negatively_regulates--> GO:0021990 * Deleted GO:0002090 --OBO_REL:is_a--> GO:0032268 * Created link GO:0002090 -OBO_REL:is_a-> GO:0031323 * Deleted GO:0002091 --OBO_REL:is_a--> GO:0032269 * Created link GO:0002091 -OBO_REL:is_a-> GO:0031324 * Deleted GO:0002092 --OBO_REL:is_a--> GO:0032270 * Created link GO:0002092 -OBO_REL:is_a-> GO:0031325 * Created link GO:0004693 -part_of-> GO:0007049 * Changed definition of GO:0006283 from "The preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the general nucleotide excision repair pathway." to "The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway." * Added synonym "TC-NER" to GO:0006283 * Added general dbxref PMID:10197977 to synonym TC-NER of GO:0006283 * Changed synonym scope of GO:0006283 from "Related" to "Exact" * Added synonym "TCR" to GO:0006283 * Added general dbxref PMID:18794354 to synonym TCR of GO:0006283 * Added general dbxref GOC:vw to synonym TCR of GO:0006283 * Added synonym "transcription-coupled NER" to GO:0006283 * Added general dbxref GOC:mah to synonym transcription-coupled NER of GO:0006283 * Changed synonym scope of GO:0006283 from "Related" to "Exact" * Added synonym "transcription-coupled repair" to GO:0006283 * Added general dbxref PMID:18794354 to synonym transcription-coupled repair of GO:0006283 * Added general dbxref GOC:vw to synonym transcription-coupled repair of GO:0006283 * Changed synonym scope of GO:0006283 from "Related" to "Exact" * Changed definition of GO:0006289 from "In nucleotide excision repair a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts)." to "A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts)." * Deleted GO:0007096 --OBO_REL:is_a--> GO:0007088 * Created link GO:0007096 -OBO_REL:is_a-> GO:0010564 * Created link GO:0031321 -OBO_REL:is_a-> GO:0022607 * Deleted GO:0031536 --OBO_REL:is_a--> GO:0045840 * Created link GO:0031536 -OBO_REL:is_a-> GO:0090068 * Changed synonym scope of GO:0042101 from "Exact" to "Related" * Created link GO:0044036 -part_of-> GO:0070882 * Created link GO:0060871 -OBO_REL:is_a-> GO:0007047 * Changed definition of GO:0070522 from "A heterodimeric protein complex that has endonuclease activity specific for bubble structures characteristic of certain DNA lesions. The subunits are known as XPF/ERCC4 and ERCC1 in mammals, and Rad1p and Rad10p in S. cerevisiae." to "A heterodimeric nucleotide-excision repair complex that has endonuclease activity specific for bubble structures characteristic of certain DNA lesions. The subunits are known as XPF/ERCC4 and ERCC1 in mammals, and Rad1p and Rad10p in S. cerevisiae." From gocvs at genome.stanford.edu Thu Sep 10 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 10 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/10/2009 Message-ID: <200909110430.n8B4UCAT017594@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.782 by 1.784 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0000972 * Created object of type obo:TERM with id GO:0000973 * Created object of type obo:TERM with id GO:0070914 * Created object of type obo:TERM with id GO:0070915 * Created object of type obo:TERM with id GO:0070916 * Created object of type obo:TERM with id GO:0070917 * [Changed name of GO:0000972 from "null" to "transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery", Set definition of GO:0000972 to "The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript.", Added definition dbxref GOC:krc to GO:0000972, Added definition dbxref PMID:18614049 to GO:0000972, Created link GO:0000972 -OBO_REL:is_a-> GO:0051276, Assigned namespace "biological_process" to GO:0000972] * Changed name of GO:0000972 from "null" to "transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery" * Set definition of GO:0000972 to "The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-acting transcriptional activators, and also the 3'-UTR of the transcript." * Added definition dbxref GOC:krc to GO:0000972 * Added definition dbxref PMID:18614049 to GO:0000972 * Created link GO:0000972 -OBO_REL:is_a-> GO:0051276 * Assigned namespace "biological_process" to GO:0000972 * [Changed name of GO:0000973 from "null" to "posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery", Set definition of GO:0000973 to "The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery even after transcription has been repressed.", Added definition dbxref GOC:krc to GO:0000973, Added definition dbxref PMID:17373856 to GO:0000973, Added definition dbxref PMID:18614049 to GO:0000973, Created link GO:0000973 -OBO_REL:is_a-> GO:0000972, Assigned namespace "biological_process" to GO:0000973] * Changed name of GO:0000973 from "null" to "posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery" * Set definition of GO:0000973 to "The process by which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery even after transcription has been repressed." * Added definition dbxref GOC:krc to GO:0000973 * Added definition dbxref PMID:17373856 to GO:0000973 * Added definition dbxref PMID:18614049 to GO:0000973 * Created link GO:0000973 -OBO_REL:is_a-> GO:0000972 * Assigned namespace "biological_process" to GO:0000973 * [Changed name of GO:0070914 from "null" to "UV-damage excision repair", Set definition of GO:0070914 to "A DNA repair process that is initiated by an endonuclease that introduces a single-strand incision immediately 5' of a UV-induced damage site. UV-damage excision repair acts on both cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone 6-4 photoproducts (6-4PPs).", Added definition dbxref GOC:mah to GO:0070914, Added definition dbxref PMID:9619100 to GO:0070914, Added synonym "UV-damaged DNA endonuclease-dependent excision repair" to GO:0070914, Added general dbxref GOC:vw to synonym UV-damaged DNA endonuclease-dependent excision repair of GO:0070914, Changed synonym scope of GO:0070914 from "Related" to "Exact", Added synonym "UVDE-dependent excision repair" to GO:0070914, Added general dbxref PMID:9619100 to synonym UVDE-dependent excision repair of GO:0070914, Added general dbxref GOC:vw to synonym UVDE-dependent excision repair of GO:0070914, Changed synonym scope of GO:0070914 from "Related" to "Exact", Added synonym "UVER" to GO:0070914, Added general dbxref PMID:9619100 to synonym UVER of GO:0070914, Added general dbxref GOC:vw to synonym UVER of GO:0070914, Changed synonym scope of GO:0070914 from "Related" to "Exact", Created link GO:0070914 -OBO_REL:is_a-> GO:0006281, Assigned namespace "biological_process" to GO:0070914] * Changed name of GO:0070914 from "null" to "UV-damage excision repair" * Set definition of GO:0070914 to "A DNA repair process that is initiated by an endonuclease that introduces a single-strand incision immediately 5' of a UV-induced damage site. UV-damage excision repair acts on both cyclobutane pyrimidine dimers (CPDs) and pyrimidine-pyrimidone 6-4 photoproducts (6-4PPs)." * Added definition dbxref GOC:mah to GO:0070914 * Added definition dbxref PMID:9619100 to GO:0070914 * Added synonym "UV-damaged DNA endonuclease-dependent excision repair" to GO:0070914 * Added general dbxref GOC:vw to synonym UV-damaged DNA endonuclease-dependent excision repair of GO:0070914 * Changed synonym scope of GO:0070914 from "Related" to "Exact" * Added synonym "UVDE-dependent excision repair" to GO:0070914 * Added general dbxref PMID:9619100 to synonym UVDE-dependent excision repair of GO:0070914 * Added general dbxref GOC:vw to synonym UVDE-dependent excision repair of GO:0070914 * Changed synonym scope of GO:0070914 from "Related" to "Exact" * Added synonym "UVER" to GO:0070914 * Added general dbxref PMID:9619100 to synonym UVER of GO:0070914 * Added general dbxref GOC:vw to synonym UVER of GO:0070914 * Changed synonym scope of GO:0070914 from "Related" to "Exact" * Created link GO:0070914 -OBO_REL:is_a-> GO:0006281 * Assigned namespace "biological_process" to GO:0070914 * [Changed name of GO:0070915 from "null" to "lysophosphatidic acid receptor activity", Set definition of GO:0070915 to "Combining with lysophosphatidic acid to initiate a change in cell activity.", Added definition dbxref GOC:mah to GO:0070915, Created link GO:0070915 -OBO_REL:is_a-> GO:0045125, Assigned namespace "molecular_function" to GO:0070915] * Changed name of GO:0070915 from "null" to "lysophosphatidic acid receptor activity" * Set definition of GO:0070915 to "Combining with lysophosphatidic acid to initiate a change in cell activity." * Added definition dbxref GOC:mah to GO:0070915 * Created link GO:0070915 -OBO_REL:is_a-> GO:0045125 * Assigned namespace "molecular_function" to GO:0070915 * [Changed name of GO:0070916 from "null" to "inositol phosphoceramide synthase complex", Set definition of GO:0070916 to "A protein complex that possesses inositol phosphoceramide synthase activity and contains a catalytic subunit and a regulatory subunit (Aur1p and Kei1p, respectively, in Saccharomyces).", Added definition dbxref GOC:mah to GO:0070916, Added definition dbxref PMID:19726565 to GO:0070916, Added synonym "IPC synthase complex" to GO:0070916, Added general dbxref GOC:mah to synonym IPC synthase complex of GO:0070916, Changed synonym scope of GO:0070916 from "Related" to "Exact", Created link GO:0070916 -OBO_REL:is_a-> GO:0043234, Created link GO:0070916 -OBO_REL:is_a-> GO:0044431, Assigned namespace "cellular_component" to GO:0070916] * Changed name of GO:0070916 from "null" to "inositol phosphoceramide synthase complex" * Set definition of GO:0070916 to "A protein complex that possesses inositol phosphoceramide synthase activity and contains a catalytic subunit and a regulatory subunit (Aur1p and Kei1p, respectively, in Saccharomyces)." * Added definition dbxref GOC:mah to GO:0070916 * Added definition dbxref PMID:19726565 to GO:0070916 * Added synonym "IPC synthase complex" to GO:0070916 * Added general dbxref GOC:mah to synonym IPC synthase complex of GO:0070916 * Changed synonym scope of GO:0070916 from "Related" to "Exact" * Created link GO:0070916 -OBO_REL:is_a-> GO:0043234 * Created link GO:0070916 -OBO_REL:is_a-> GO:0044431 * Assigned namespace "cellular_component" to GO:0070916 * [Changed name of GO:0070917 from "null" to "inositol phosphoceramide synthase regulator activity", Added comment "See also the molecular function term 'histone acetyltransferase activity ; GO:0004402'.", Set definition of GO:0070917 to "Modulates the activity of inositol phosphoceramide synthase.", Added definition dbxref GOC:mah to GO:0070917, Added synonym "IPC synthase regulator activity" to GO:0070917, Changed synonym scope of GO:0070917 from "Related" to "Exact", Created link GO:0070917 -regulates-> GO:0045140, Created link GO:0070917 -OBO_REL:is_a-> GO:0030234, Assigned namespace "molecular_function" to GO:0070917] * Changed name of GO:0070917 from "null" to "inositol phosphoceramide synthase regulator activity" * Added comment "See also the molecular function term 'histone acetyltransferase activity ; GO:0004402'." * Set definition of GO:0070917 to "Modulates the activity of inositol phosphoceramide synthase." * Added definition dbxref GOC:mah to GO:0070917 * Added synonym "IPC synthase regulator activity" to GO:0070917 * Changed synonym scope of GO:0070917 from "Related" to "Exact" * Created link GO:0070917 -regulates-> GO:0045140 * Created link GO:0070917 -OBO_REL:is_a-> GO:0030234 * Assigned namespace "molecular_function" to GO:0070917 * Changed comment from "Note that the repair of pyrimidine dimers by nucleotide excision repair involves the same gene products that are involved in general nucleotide excision repair. Consider also annotating to the biological process term 'nucleotide-excision repair ; GO:0006289' and its children." to "Note that the repair of pyrimidine dimers by nucleotide excision repair involves the same gene products that are involved in general nucleotide excision repair. Consider also annotating to other children of the biological process term 'nucleotide-excision repair ; GO:0006289'." * Changed definition of GO:0000725 from "The repair of damaged DNA that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous region of DNA." to "A DNA repair process that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous region of DNA." * Changed definition of GO:0000726 from "The repair of damaged DNA that does not require the exchange of genetic material between the broken DNA molecule and a homologous region of DNA." to "A DNA repair process in which that does not require the exchange of genetic material between the broken DNA molecule and a homologous region of DNA." * Deleted GO:0009449 --OBO_REL:is_a--> GO:0019438 * Deleted GO:0009450 --OBO_REL:is_a--> GO:0019439 * Changed definition of GO:0010213 from "Process involved in repairing UV-induced DNA damage under non-photoreactivating conditions. The mechanism by which this repair process operates has not yet been completely elucidated." to "A DNA repair process that is involved in repairing UV-induced DNA damage under non-photoreactivating conditions. The mechanism by which this repair process operates has not yet been completely elucidated." * Deleted GO:0042025 --OBO_REL:is_a--> GO:0033646 From gocvs at genome.stanford.edu Fri Sep 11 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 11 Sep 2009 21:30:13 -0700 Subject: [Go-diff] GO update 09/11/2009 Message-ID: <200909120430.n8C4UDmx005508@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.784 by 1.786 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070918 * Created object of type obo:TERM with id GO:0070919 * Created object of type obo:TERM with id GO:0070920 * Created object of type obo:TERM with id GO:0070921 * Created object of type obo:TERM with id GO:0070922 * Created object of type obo:TERM with id GO:0070923 * Created object of type obo:TERM with id GO:0070924 * Created object of type obo:TERM with id GO:0090069 * Created object of type obo:TERM with id GO:0090070 * Created object of type obo:TERM with id GO:0090071 * Created object of type obo:TERM with id GO:0090072 * Created object of type obo:TERM with id GO:0090073 * Created object of type obo:TERM with id GO:0090074 * Created object of type obo:TERM with id GO:0090075 * Created object of type obo:TERM with id GO:0090076 * [Changed name of GO:0070918 from "null" to "production of small RNA involved in gene silencing by RNA", Set definition of GO:0070918 to "The process by which a double-stranded RNA precursor is processed into short (20-30 nt) fragments. RNA cleavage is catalyzed by a Dicer endonuclease.", Added definition dbxref GOC:mah to GO:0070918, Added definition dbxref PMID:19239886 to GO:0070918, Added synonym "gene silencing by RNA, production of guide RNA" to GO:0070918, Added general dbxref GOC:mah to synonym gene silencing by RNA, production of guide RNA of GO:0070918, Changed synonym scope of GO:0070918 from "Related" to "Exact", Added synonym "gene silencing by RNA, production of small RNA" to GO:0070918, Added general dbxref GOC:mah to synonym gene silencing by RNA, production of small RNA of GO:0070918, Changed synonym scope of GO:0070918 from "Related" to "Exact", Created link GO:0070918 -OBO_REL:is_a-> GO:0031050, Created link GO:0070918 -part_of-> GO:0031047, Assigned namespace "biological_process" to GO:0070918] * Changed name of GO:0070918 from "null" to "production of small RNA involved in gene silencing by RNA" * Set definition of GO:0070918 to "The process by which a double-stranded RNA precursor is processed into short (20-30 nt) fragments. RNA cleavage is catalyzed by a Dicer endonuclease." * Added definition dbxref GOC:mah to GO:0070918 * Added definition dbxref PMID:19239886 to GO:0070918 * Added synonym "gene silencing by RNA, production of guide RNA" to GO:0070918 * Added general dbxref GOC:mah to synonym gene silencing by RNA, production of guide RNA of GO:0070918 * Changed synonym scope of GO:0070918 from "Related" to "Exact" * Added synonym "gene silencing by RNA, production of small RNA" to GO:0070918 * Added general dbxref GOC:mah to synonym gene silencing by RNA, production of small RNA of GO:0070918 * Changed synonym scope of GO:0070918 from "Related" to "Exact" * Created link GO:0070918 -OBO_REL:is_a-> GO:0031050 * Created link GO:0070918 -part_of-> GO:0031047 * Assigned namespace "biological_process" to GO:0070918 * [Changed name of GO:0070919 from "null" to "production of siRNA involved in chromatin silencing by small RNA", Set definition of GO:0070919 to "Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of chromatin silencing by small RNA.", Added definition dbxref GOC:mah to GO:0070919, Added definition dbxref PMID:19239886 to GO:0070919, Added synonym "chromatin silencing by small RNA, production of guide RNAs" to GO:0070919, Changed synonym scope of GO:0070919 from "Related" to "Exact", Added synonym "chromatin silencing by small RNA, production of siRNA" to GO:0070919, Added general dbxref GOC:mah to synonym chromatin silencing by small RNA, production of siRNA of GO:0070919, Changed synonym scope of GO:0070919 from "Related" to "Exact", Added synonym "production of guide RNAs involved in chromatin silencing by small RNA" to GO:0070919, Added general dbxref GOC:mah to synonym production of guide RNAs involved in chromatin silencing by small RNA of GO:0070919, Changed synonym scope of GO:0070919 from "Related" to "Exact", Created link GO:0070919 -OBO_REL:is_a-> GO:0070918, Created link GO:0070919 -part_of-> GO:0031048, Assigned namespace "biological_process" to GO:0070919] * Changed name of GO:0070919 from "null" to "production of siRNA involved in chromatin silencing by small RNA" * Set definition of GO:0070919 to "Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of chromatin silencing by small RNA." * Added definition dbxref GOC:mah to GO:0070919 * Added definition dbxref PMID:19239886 to GO:0070919 * Added synonym "chromatin silencing by small RNA, production of guide RNAs" to GO:0070919 * Changed synonym scope of GO:0070919 from "Related" to "Exact" * Added synonym "chromatin silencing by small RNA, production of siRNA" to GO:0070919 * Added general dbxref GOC:mah to synonym chromatin silencing by small RNA, production of siRNA of GO:0070919 * Changed synonym scope of GO:0070919 from "Related" to "Exact" * Added synonym "production of guide RNAs involved in chromatin silencing by small RNA" to GO:0070919 * Added general dbxref GOC:mah to synonym production of guide RNAs involved in chromatin silencing by small RNA of GO:0070919 * Changed synonym scope of GO:0070919 from "Related" to "Exact" * Created link GO:0070919 -OBO_REL:is_a-> GO:0070918 * Created link GO:0070919 -part_of-> GO:0031048 * Assigned namespace "biological_process" to GO:0070919 * [Changed name of GO:0070920 from "null" to "regulation of production of small RNA involved in gene silencing by RNA", Set definition of GO:0070920 to "Any process that modulates the frequency, rate or extent of the production of small RNA involved in gene silencing by RNA.", Added definition dbxref GOC:mah to GO:0070920, Added synonym "regulation of gene silencing by RNA, production of guide RNA" to GO:0070920, Added general dbxref GOC:mah to synonym regulation of gene silencing by RNA, production of guide RNA of GO:0070920, Changed synonym scope of GO:0070920 from "Related" to "Exact", Added synonym "regulation of gene silencing by RNA, production of small RNA" to GO:0070920, Added general dbxref GOC:mah to synonym regulation of gene silencing by RNA, production of small RNA of GO:0070920, Changed synonym scope of GO:0070920 from "Related" to "Exact", Created link GO:0070920 -regulates-> GO:0070918, Created link GO:0070920 -OBO_REL:is_a-> GO:0051252, Assigned namespace "biological_process" to GO:0070920] * Changed name of GO:0070920 from "null" to "regulation of production of small RNA involved in gene silencing by RNA" * Set definition of GO:0070920 to "Any process that modulates the frequency, rate or extent of the production of small RNA involved in gene silencing by RNA." * Added definition dbxref GOC:mah to GO:0070920 * Added synonym "regulation of gene silencing by RNA, production of guide RNA" to GO:0070920 * Added general dbxref GOC:mah to synonym regulation of gene silencing by RNA, production of guide RNA of GO:0070920 * Changed synonym scope of GO:0070920 from "Related" to "Exact" * Added synonym "regulation of gene silencing by RNA, production of small RNA" to GO:0070920 * Added general dbxref GOC:mah to synonym regulation of gene silencing by RNA, production of small RNA of GO:0070920 * Changed synonym scope of GO:0070920 from "Related" to "Exact" * Created link GO:0070920 -regulates-> GO:0070918 * Created link GO:0070920 -OBO_REL:is_a-> GO:0051252 * Assigned namespace "biological_process" to GO:0070920 * [Changed name of GO:0070921 from "null" to "regulation of production of siRNA involved in chromatin silencing by small RNA", Set definition of GO:0070921 to "Any process that modulates the frequency, rate or extent of the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of chromatin silencing by small RNA.", Added definition dbxref GOC:mah to GO:0070921, Added synonym "regulation of chromatin silencing by small RNA, production of siRNA" to GO:0070921, Added general dbxref GOC:mah to synonym regulation of chromatin silencing by small RNA, production of siRNA of GO:0070921, Changed synonym scope of GO:0070921 from "Related" to "Exact", Created link GO:0070921 -OBO_REL:is_a-> GO:0010964, Created link GO:0070921 -regulates-> GO:0070919, Created link GO:0070921 -OBO_REL:is_a-> GO:0070920, Assigned namespace "biological_process" to GO:0070921] * Changed name of GO:0070921 from "null" to "regulation of production of siRNA involved in chromatin silencing by small RNA" * Set definition of GO:0070921 to "Any process that modulates the frequency, rate or extent of the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of chromatin silencing by small RNA." * Added definition dbxref GOC:mah to GO:0070921 * Added synonym "regulation of chromatin silencing by small RNA, production of siRNA" to GO:0070921 * Added general dbxref GOC:mah to synonym regulation of chromatin silencing by small RNA, production of siRNA of GO:0070921 * Changed synonym scope of GO:0070921 from "Related" to "Exact" * Created link GO:0070921 -OBO_REL:is_a-> GO:0010964 * Created link GO:0070921 -regulates-> GO:0070919 * Created link GO:0070921 -OBO_REL:is_a-> GO:0070920 * Assigned namespace "biological_process" to GO:0070921 * [Changed name of GO:0070922 from "null" to "small RNA loading onto RISC", Set definition of GO:0070922 to "The process by which a single-stranded small RNA associates with the RNA-initiated silencing complex (RISC); occurs as part of a process of gene silencing by small RNA.", Added definition dbxref GOC:mah to GO:0070922, Added definition dbxref PMID:19239886 to GO:0070922, Added synonym "gene silencing by RNA, small RNA loading onto RISC" to GO:0070922, Added general dbxref GOC:mah to synonym gene silencing by RNA, small RNA loading onto RISC of GO:0070922, Changed synonym scope of GO:0070922 from "Related" to "Exact", Added synonym "RISC assembly" to GO:0070922, Added general dbxref GOC:mah to synonym RISC assembly of GO:0070922, Created link GO:0070922 -OBO_REL:is_a-> GO:0022618, Created link GO:0070922 -part_of-> GO:0031047, Assigned namespace "biological_process" to GO:0070922] * Changed name of GO:0070922 from "null" to "small RNA loading onto RISC" * Set definition of GO:0070922 to "The process by which a single-stranded small RNA associates with the RNA-initiated silencing complex (RISC); occurs as part of a process of gene silencing by small RNA." * Added definition dbxref GOC:mah to GO:0070922 * Added definition dbxref PMID:19239886 to GO:0070922 * Added synonym "gene silencing by RNA, small RNA loading onto RISC" to GO:0070922 * Added general dbxref GOC:mah to synonym gene silencing by RNA, small RNA loading onto RISC of GO:0070922 * Changed synonym scope of GO:0070922 from "Related" to "Exact" * Added synonym "RISC assembly" to GO:0070922 * Added general dbxref GOC:mah to synonym RISC assembly of GO:0070922 * Created link GO:0070922 -OBO_REL:is_a-> GO:0022618 * Created link GO:0070922 -part_of-> GO:0031047 * Assigned namespace "biological_process" to GO:0070922 * [Changed name of GO:0070923 from "null" to "siRNA loading onto RISC involved in chromatin silencing by small RNA", Set definition of GO:0070923 to "The process by which a single-stranded small RNA associates with the RNA-initiated silencing complex (RISC); occurs as part of a process of chromatin silencing by small RNA.", Added definition dbxref GOC:mah to GO:0070923, Added definition dbxref PMID:19239886 to GO:0070923, Added synonym "chromatin silencing by small RNA, siRNA loading onto RISC" to GO:0070923, Added general dbxref GOC:mah to synonym chromatin silencing by small RNA, siRNA loading onto RISC of GO:0070923, Changed synonym scope of GO:0070923 from "Related" to "Exact", Created link GO:0070923 -OBO_REL:is_a-> GO:0070922, Created link GO:0070923 -part_of-> GO:0031048, Assigned namespace "biological_process" to GO:0070923] * Changed name of GO:0070923 from "null" to "siRNA loading onto RISC involved in chromatin silencing by small RNA" * Set definition of GO:0070923 to "The process by which a single-stranded small RNA associates with the RNA-initiated silencing complex (RISC); occurs as part of a process of chromatin silencing by small RNA." * Added definition dbxref GOC:mah to GO:0070923 * Added definition dbxref PMID:19239886 to GO:0070923 * Added synonym "chromatin silencing by small RNA, siRNA loading onto RISC" to GO:0070923 * Added general dbxref GOC:mah to synonym chromatin silencing by small RNA, siRNA loading onto RISC of GO:0070923 * Changed synonym scope of GO:0070923 from "Related" to "Exact" * Created link GO:0070923 -OBO_REL:is_a-> GO:0070922 * Created link GO:0070923 -part_of-> GO:0031048 * Assigned namespace "biological_process" to GO:0070923 * [Changed name of GO:0070924 from "null" to "heterochromatin formation involved in chromatin silencing by small RNA", Set definition of GO:0070924 to "The process by which an siRNA-associated RNA-induced silencing complex (siRISC) associates with nascent transcripts and RNA polymerase to induce the formation of heterochromatin.", Added definition dbxref GOC:mah to GO:0070924, Added definition dbxref PMID:19239886 to GO:0070924, Added synonym "chromatin silencing by small RNA, heterochromatin formation" to GO:0070924, Added general dbxref GOC:mah to synonym chromatin silencing by small RNA, heterochromatin formation of GO:0070924, Changed synonym scope of GO:0070924 from "Related" to "Exact", Added synonym "small RNA-mediated heterochromatin biosynthesis" to GO:0070924, Added general dbxref GOC:mah to synonym small RNA-mediated heterochromatin biosynthesis of GO:0070924, Changed synonym scope of GO:0070924 from "Related" to "Exact", Added synonym "small RNA-mediated heterochromatin formation" to GO:0070924, Added general dbxref GOC:mah to synonym small RNA-mediated heterochromatin formation of GO:0070924, Changed synonym scope of GO:0070924 from "Related" to "Exact", Created link GO:0070924 -part_of-> GO:0031048, Created link GO:0070924 -OBO_REL:is_a-> GO:0070869, Assigned namespace "biological_process" to GO:0070924] * Changed name of GO:0070924 from "null" to "heterochromatin formation involved in chromatin silencing by small RNA" * Set definition of GO:0070924 to "The process by which an siRNA-associated RNA-induced silencing complex (siRISC) associates with nascent transcripts and RNA polymerase to induce the formation of heterochromatin." * Added definition dbxref GOC:mah to GO:0070924 * Added definition dbxref PMID:19239886 to GO:0070924 * Added synonym "chromatin silencing by small RNA, heterochromatin formation" to GO:0070924 * Added general dbxref GOC:mah to synonym chromatin silencing by small RNA, heterochromatin formation of GO:0070924 * Changed synonym scope of GO:0070924 from "Related" to "Exact" * Added synonym "small RNA-mediated heterochromatin biosynthesis" to GO:0070924 * Added general dbxref GOC:mah to synonym small RNA-mediated heterochromatin biosynthesis of GO:0070924 * Changed synonym scope of GO:0070924 from "Related" to "Exact" * Added synonym "small RNA-mediated heterochromatin formation" to GO:0070924 * Added general dbxref GOC:mah to synonym small RNA-mediated heterochromatin formation of GO:0070924 * Changed synonym scope of GO:0070924 from "Related" to "Exact" * Created link GO:0070924 -part_of-> GO:0031048 * Created link GO:0070924 -OBO_REL:is_a-> GO:0070869 * Assigned namespace "biological_process" to GO:0070924 * [Changed name of GO:0090069 from "null" to "regulation of ribosome biogenesis", Set definition of GO:0090069 to "Any process that modulates the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.", Added definition dbxref GOC:dph to GO:0090069, Added definition dbxref GOC:tb to GO:0090069, Created link GO:0090069 -OBO_REL:is_a-> GO:0044087, Created link GO:0090069 -regulates-> GO:0042254, Assigned namespace "biological_process" to GO:0090069] * Changed name of GO:0090069 from "null" to "regulation of ribosome biogenesis" * Set definition of GO:0090069 to "Any process that modulates the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis." * Added definition dbxref GOC:dph to GO:0090069 * Added definition dbxref GOC:tb to GO:0090069 * Created link GO:0090069 -OBO_REL:is_a-> GO:0044087 * Created link GO:0090069 -regulates-> GO:0042254 * Assigned namespace "biological_process" to GO:0090069 * [Changed name of GO:0090070 from "null" to "positive regulation of ribosome biogenesis", Set definition of GO:0090070 to "Any process that increases the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.", Added definition dbxref GOC:dph to GO:0090070, Added definition dbxref GOC:tb to GO:0090070, Created link GO:0090070 -positively_regulates-> GO:0042254, Created link GO:0090070 -OBO_REL:is_a-> GO:0090069, Created link GO:0090070 -OBO_REL:is_a-> GO:0044089, Assigned namespace "biological_process" to GO:0090070] * Changed name of GO:0090070 from "null" to "positive regulation of ribosome biogenesis" * Set definition of GO:0090070 to "Any process that increases the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis." * Added definition dbxref GOC:dph to GO:0090070 * Added definition dbxref GOC:tb to GO:0090070 * Created link GO:0090070 -positively_regulates-> GO:0042254 * Created link GO:0090070 -OBO_REL:is_a-> GO:0090069 * Created link GO:0090070 -OBO_REL:is_a-> GO:0044089 * Assigned namespace "biological_process" to GO:0090070 * [Changed name of GO:0090071 from "null" to "negative regulation of ribosome biogenesis", Set definition of GO:0090071 to "Any process that decreases the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.", Added definition dbxref GOC:dph to GO:0090071, Added definition dbxref GOC:tb to GO:0090071, Created link GO:0090071 -negatively_regulates-> GO:0042254, Created link GO:0090071 -OBO_REL:is_a-> GO:0090069, Assigned namespace "biological_process" to GO:0090071] * Changed name of GO:0090071 from "null" to "negative regulation of ribosome biogenesis" * Set definition of GO:0090071 to "Any process that decreases the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis." * Added definition dbxref GOC:dph to GO:0090071 * Added definition dbxref GOC:tb to GO:0090071 * Created link GO:0090071 -negatively_regulates-> GO:0042254 * Created link GO:0090071 -OBO_REL:is_a-> GO:0090069 * Assigned namespace "biological_process" to GO:0090071 * [Changed name of GO:0090072 from "null" to "positive regulation of sodium ion transport via voltage-gated sodium channel activity", Set definition of GO:0090072 to "Any process that activates or increases the frequency, rate or extent of the directed movement of sodium ions via the activity of voltage-gated sodium channels.", Added definition dbxref GOC:dph to GO:0090072, Added definition dbxref GOC:tb to GO:0090072, Created link GO:0090072 -OBO_REL:is_a-> GO:0010765, Assigned namespace "biological_process" to GO:0090072] * Changed name of GO:0090072 from "null" to "positive regulation of sodium ion transport via voltage-gated sodium channel activity" * Set definition of GO:0090072 to "Any process that activates or increases the frequency, rate or extent of the directed movement of sodium ions via the activity of voltage-gated sodium channels." * Added definition dbxref GOC:dph to GO:0090072 * Added definition dbxref GOC:tb to GO:0090072 * Created link GO:0090072 -OBO_REL:is_a-> GO:0010765 * Assigned namespace "biological_process" to GO:0090072 * [Changed name of GO:0090073 from "null" to "positive regulation of protein homodimerization activity", Set definition of GO:0090073 to "Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer.", Added definition dbxref GOC:dph to GO:0090073, Added definition dbxref GOC:tb to GO:0090073, Created link GO:0090073 -OBO_REL:is_a-> GO:0043496, Created link GO:0090073 -positively_regulates-> GO:0042803, Assigned namespace "biological_process" to GO:0090073] * Changed name of GO:0090073 from "null" to "positive regulation of protein homodimerization activity" * Set definition of GO:0090073 to "Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer." * Added definition dbxref GOC:dph to GO:0090073 * Added definition dbxref GOC:tb to GO:0090073 * Created link GO:0090073 -OBO_REL:is_a-> GO:0043496 * Created link GO:0090073 -positively_regulates-> GO:0042803 * Assigned namespace "biological_process" to GO:0090073 * [Changed name of GO:0090074 from "null" to "negative regulation of protein homodimerization activity", Set definition of GO:0090074 to "Any process that decreases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer.", Added definition dbxref GOC:dph to GO:0090074, Added definition dbxref GOC:tb to GO:0090074, Created link GO:0090074 -OBO_REL:is_a-> GO:0043496, Created link GO:0090074 -negatively_regulates-> GO:0042803, Assigned namespace "biological_process" to GO:0090074] * Changed name of GO:0090074 from "null" to "negative regulation of protein homodimerization activity" * Set definition of GO:0090074 to "Any process that decreases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer." * Added definition dbxref GOC:dph to GO:0090074 * Added definition dbxref GOC:tb to GO:0090074 * Created link GO:0090074 -OBO_REL:is_a-> GO:0043496 * Created link GO:0090074 -negatively_regulates-> GO:0042803 * Assigned namespace "biological_process" to GO:0090074 * [Changed name of GO:0090075 from "null" to "relaxation of muscle", Set definition of GO:0090075 to "A process whereby the extent of muscle contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases.", Added definition dbxref GOC:rl to GO:0090075, Created link GO:0090075 -OBO_REL:is_a-> GO:0003012, Assigned namespace "biological_process" to GO:0090075] * Changed name of GO:0090075 from "null" to "relaxation of muscle" * Set definition of GO:0090075 to "A process whereby the extent of muscle contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases." * Added definition dbxref GOC:rl to GO:0090075 * Created link GO:0090075 -OBO_REL:is_a-> GO:0003012 * Assigned namespace "biological_process" to GO:0090075 * [Changed name of GO:0090076 from "null" to "relaxation of skeletal muscle", Set definition of GO:0090076 to "A process whereby the extent of skeletal muscle tissue contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases.", Added definition dbxref GOC:rl to GO:0090076, Created link GO:0090076 -OBO_REL:is_a-> GO:0090075, Assigned namespace "biological_process" to GO:0090076] * Changed name of GO:0090076 from "null" to "relaxation of skeletal muscle" * Set definition of GO:0090076 to "A process whereby the extent of skeletal muscle tissue contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases." * Added definition dbxref GOC:rl to GO:0090076 * Created link GO:0090076 -OBO_REL:is_a-> GO:0090075 * Assigned namespace "biological_process" to GO:0090076 * Changed comment from "See also the cellular component terms 'eukaryotic 43S preinitiation complex ; GO:0016282', 'eukaryotic 48S initiation complex ; GO:0016283', and their children." to "See also the cellular component terms 'eukaryotic 43S preinitiation complex ; GO:0016282', 'eukaryotic 48S initiation complex ; GO:0033290', and their children." * Removed comment * Changed name of GO:0007416 from "synaptogenesis" to "synapse assembly" * Changed definition of GO:0007416 from "The biogenesis of a synapse." to "The aggregation, arrangement and bonding together of a set of components to form a synapse." * Deleted definition dbxref http://cancerweb.ncl.ac.uk/ from GO:0007416 * Added definition dbxref GOC:mah to GO:0007416 * Added general dbxref GOC:mah to synonym synapse biogenesis of GO:0007416 * org.obo.history.ChangeSynTypeHistoryItem at 32c888a6 * Added synonym "synaptogenesis" to GO:0007416 * Added general dbxref GOC:mah to synonym synaptogenesis of GO:0007416 * Changed synonym scope of GO:0007416 from "Related" to "Exact" * Deleted GO:0007416 --OBO_REL:is_a--> GO:0044085 * Created link GO:0007416 -OBO_REL:is_a-> GO:0022607 * Changed name of GO:0010267 from "RNA interference, production of ta-siRNAs" to "production of ta-siRNAs involved in RNA interference" * Added synonym "RNA interference, production of ta-siRNAs" to GO:0010267 * Added general dbxref GOC:mah to synonym RNA interference, production of ta-siRNAs of GO:0010267 * Changed synonym scope of GO:0010267 from "Related" to "Exact" * Changed name of GO:0010599 from "RNA interference, production of lsiRNA" to "production of lsiRNA involved in RNA interference" * Added synonym "RNA interference, production of lsiRNA" to GO:0010599 * Added general dbxref GOC:mah to synonym RNA interference, production of lsiRNA of GO:0010599 * Changed synonym scope of GO:0010599 from "Related" to "Exact" * Deleted GO:0010599 --OBO_REL:is_a--> GO:0031050 * Created link GO:0010599 -OBO_REL:is_a-> GO:0070918 * Changed definition of GO:0010961 from "Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell." to "Any process involved in the maintenance of an internal equilibrium of magnesium ions at the level of a cell." * Added comment "Note that this term refers specifically to posttranscriptional mechanisms by which small interfering RNAs down-regulate gene expression. Also consider annotating to other descendants of 'gene silencing by RNA ; GO:0031047'." * Added synonym "posttranscriptional gene silencing by siRNA" to GO:0016246 * Added general dbxref GOC:mah to synonym posttranscriptional gene silencing by siRNA of GO:0016246 * Changed synonym scope of GO:0016246 from "Related" to "Exact" * Changed comment from "See also the molecular function term 'copper, zinc superoxide dismutase activity ; GO:0004785'." to "See also the molecular function term 'superoxide dismutase activity ; GO:0004784'." * Changed comment from "See also the cellular component term 'caveolar membrane ; GO:0016599'." to "See also the cellular component term 'caveola ; GO:0005901'." * Changed name of GO:0021531 from "radial glial cell differentiation in the spinal cord" to "radial glial cell differentiation in spinal cord" * Created link GO:0021531 -OBO_REL:is_a-> GO:0021515 * Created link GO:0021847 -OBO_REL:is_a-> GO:0021873 * Deleted GO:0021848 --OBO_REL:is_a--> GO:0055057 * Created link GO:0021848 -OBO_REL:is_a-> GO:0021873 * Deleted GO:0022017 --OBO_REL:is_a--> GO:0017145 * Created link GO:0022017 -OBO_REL:is_a-> GO:0021873 * Created link GO:0022030 -OBO_REL:is_a-> GO:0008347 * Created link GO:0022031 -OBO_REL:is_a-> GO:0043615 * Changed name of GO:0030422 from "RNA interference, production of siRNA" to "production of siRNA involved in RNA interference" * Changed definition of GO:0030422 from "Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides." to "Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference." * Added definition dbxref GOC:mah to GO:0030422 * Added synonym "production of guide RNAs involved in RNA interference" to GO:0030422 * Added general dbxref GOC:mah to synonym production of guide RNAs involved in RNA interference of GO:0030422 * Changed synonym scope of GO:0030422 from "Related" to "Exact" * Added synonym "RNA interference, production of siRNA" to GO:0030422 * Added general dbxref GOC:mah to synonym RNA interference, production of siRNA of GO:0030422 * Changed synonym scope of GO:0030422 from "Related" to "Exact" * Deleted GO:0030422 --OBO_REL:is_a--> GO:0031050 * Created link GO:0030422 -OBO_REL:is_a-> GO:0070918 * Changed name of GO:0030423 from "RNA interference, targeting of mRNA for destruction" to "targeting of mRNA for destruction involved in RNA interference" * Added synonym "RNA interference, targeting of mRNA for destruction" to GO:0030423 * Added general dbxref GOC:mah to synonym RNA interference, targeting of mRNA for destruction of GO:0030423 * Changed synonym scope of GO:0030423 from "Related" to "Exact" * Added synonym "cellular spore formation by sporulation" to GO:0030435 * Added general dbxref GOC:tb to synonym cellular spore formation by sporulation of GO:0030435 * Added general dbxref GOC:dph to synonym cellular spore formation by sporulation of GO:0030435 * Changed synonym scope of GO:0030435 from "Related" to "Exact" * Created link GO:0030704 -OBO_REL:is_a-> GO:0010926 * Changed comment from "Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'glutamyl-tRNA(Gln) amidotransferase activity ; GO:0017068'." to "Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity ; GO:0050567'." * Deleted synonym "small RNA-mediated heterochromatin biosynthesis" from GO:0031048 * Deleted synonym "small RNA-mediated heterochromatin formation" from GO:0031048 * Changed name of GO:0033168 from "RNA interference, conversion of ds siRNA to ss siRNA" to "conversion of ds siRNA to ss siRNA involved in RNA interference" * Added synonym "RNA interference, conversion of ds siRNA to ss siRNA" to GO:0033168 * Added general dbxref GOC:mah to synonym RNA interference, conversion of ds siRNA to ss siRNA of GO:0033168 * Changed synonym scope of GO:0033168 from "Related" to "Exact" * Changed name of GO:0035087 from "RNA interference, siRNA loading onto RISC" to "siRNA loading onto RISC involved in RNA interference" * Changed definition of GO:0035087 from "The transfer of small interfering RNA molecules (siRNAs) from the Dicer family of enzymes that cleave the double-stranded RNA, onto the nuclease-containing RNA-initiated silencing complex (RISC)." to "The transfer of small interfering RNA molecules (siRNAs) from the Dicer family of enzymes that cleave the double-stranded RNA, onto the nuclease-containing RNA-initiated silencing complex (RISC), in the context of RNA interference." * Added definition dbxref GOC:mah to GO:0035087 * Added synonym "RNA interference, siRNA loading onto RISC" to GO:0035087 * Added general dbxref GOC:mah to synonym RNA interference, siRNA loading onto RISC of GO:0035087 * Changed synonym scope of GO:0035087 from "Related" to "Exact" * Deleted GO:0035087 --OBO_REL:is_a--> GO:0022618 * Created link GO:0035087 -OBO_REL:is_a-> GO:0070922 * Changed name of GO:0035196 from "gene silencing by miRNA, production of miRNAs" to "production of miRNAs involved in gene silencing by miRNA" * Added synonym "gene silencing by miRNA, production of miRNAs" to GO:0035196 * Added general dbxref GOC:mah to synonym gene silencing by miRNA, production of miRNAs of GO:0035196 * Changed synonym scope of GO:0035196 from "Related" to "Exact" * Deleted GO:0035196 --OBO_REL:is_a--> GO:0031050 * Created link GO:0035196 -OBO_REL:is_a-> GO:0070918 * Changed name of GO:0035278 from "gene silencing by miRNA, negative regulation of translation" to "negative regulation of translation involved in gene silencing by miRNA" * Deleted synonym "miRNA-mediated gene silencing, down regulation of translation" from GO:0035278 * Deleted synonym "miRNA-mediated gene silencing, down-regulation of translation" from GO:0035278 * Deleted synonym "miRNA-mediated gene silencing, downregulation of translation" from GO:0035278 * Deleted synonym "miRNA-mediated gene silencing, inhibition of translation" from GO:0035278 * Added synonym "down regulation of translation involved in gene silencing by miRNA" to GO:0035278 * Added general dbxref GOC:mah to synonym down regulation of translation involved in gene silencing by miRNA of GO:0035278 * Changed synonym scope of GO:0035278 from "Related" to "Exact" * Added synonym "down-regulation of translation involved in gene silencing by miRNA" to GO:0035278 * Added general dbxref GOC:mah to synonym down-regulation of translation involved in gene silencing by miRNA of GO:0035278 * Changed synonym scope of GO:0035278 from "Related" to "Exact" * Added synonym "downregulation of translation involved in gene silencing by miRNA" to GO:0035278 * Added general dbxref GOC:mah to synonym downregulation of translation involved in gene silencing by miRNA of GO:0035278 * Changed synonym scope of GO:0035278 from "Related" to "Exact" * Added synonym "gene silencing by miRNA, negative regulation of translation" to GO:0035278 * Added general dbxref GOC:mah to synonym gene silencing by miRNA, negative regulation of translation of GO:0035278 * Changed synonym scope of GO:0035278 from "Related" to "Exact" * Added synonym "inhibition of translation involved in gene silencing by miRNA" to GO:0035278 * Added general dbxref GOC:mah to synonym inhibition of translation involved in gene silencing by miRNA of GO:0035278 * Changed synonym scope of GO:0035278 from "Related" to "Narrow" * Changed name of GO:0035279 from "gene silencing by miRNA, mRNA cleavage" to "mRNA cleavage involved in gene silencing by miRNA" * Added synonym "gene silencing by miRNA, mRNA cleavage" to GO:0035279 * Added general dbxref GOC:mah to synonym gene silencing by miRNA, mRNA cleavage of GO:0035279 * Changed synonym scope of GO:0035279 from "Related" to "Exact" * Changed name of GO:0035280 from "gene silencing by miRNA, miRNA loading onto RISC" to "miRNA loading onto RISC involved in gene silencing by miRNA" * Added synonym "gene silencing by miRNA, miRNA loading onto RISC" to GO:0035280 * Added general dbxref GOC:mah to synonym gene silencing by miRNA, miRNA loading onto RISC of GO:0035280 * Changed synonym scope of GO:0035280 from "Related" to "Exact" * Deleted GO:0035280 --OBO_REL:is_a--> GO:0022618 * Created link GO:0035280 -OBO_REL:is_a-> GO:0070922 * Created link GO:0042173 -OBO_REL:is_a-> GO:0022603 * Changed name of GO:0046931 from "pore complex biogenesis" to "pore complex assembly" * Changed definition of GO:0046931 from "The process by which a pore complex is synthesized, aggregates, and bonds together. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases." to "The aggregation, arrangement and bonding together of a set of components to form a pore complex. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases." * Added definition dbxref GOC:mah to GO:0046931 * Added synonym "pore complex biogenesis" to GO:0046931 * Added general dbxref GOC:mah to synonym pore complex biogenesis of GO:0046931 * Deleted GO:0046931 --OBO_REL:is_a--> GO:0044085 * Created link GO:0046931 -OBO_REL:is_a-> GO:0022607 * Created link GO:0048739 -OBO_REL:is_a-> GO:0048747 * Created link GO:0051292 -OBO_REL:is_a-> GO:0046931 * Deleted GO:0051925 --regulates--> GO:0005245 * Deleted GO:0051927 --negatively_regulates--> GO:0005245 * Changed definition of GO:0051929 from "Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions via a voltage-gated calcium channel." to "Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions via the activity of voltage-gated calcium channels." * Deleted GO:0051929 --positively_regulates--> GO:0005245 * Created link GO:0055119 -OBO_REL:is_a-> GO:0090075 * Created link GO:0060085 -OBO_REL:is_a-> GO:0090075 * Created link GO:0060087 -OBO_REL:is_a-> GO:0090075 * Changed name of GO:0070549 from "RNA interference, negative regulation of translation" to "negative regulation of translation involved in RNA interference" * Deleted synonym "RNA interference, down regulation of translation" from GO:0070549 * Deleted synonym "RNA interference, down-regulation of translation" from GO:0070549 * Deleted synonym "RNA interference, downregulation of translation" from GO:0070549 * Deleted synonym "RNA interference, inhibition of translation" from GO:0070549 * Added synonym "down regulation of translation involved in RNA interference" to GO:0070549 * Added general dbxref GOC:mah to synonym down regulation of translation involved in RNA interference of GO:0070549 * Changed synonym scope of GO:0070549 from "Related" to "Exact" * Added synonym "down-regulation of translation involved in RNA interference" to GO:0070549 * Added general dbxref GOC:mah to synonym down-regulation of translation involved in RNA interference of GO:0070549 * Changed synonym scope of GO:0070549 from "Related" to "Exact" * Added synonym "downregulation of translation involved in RNA interference" to GO:0070549 * Added general dbxref GOC:mah to synonym downregulation of translation involved in RNA interference of GO:0070549 * Changed synonym scope of GO:0070549 from "Related" to "Exact" * Added synonym "inhibition of translation involved in RNA interference" to GO:0070549 * Added general dbxref GOC:mah to synonym inhibition of translation involved in RNA interference of GO:0070549 * Changed synonym scope of GO:0070549 from "Related" to "Narrow" * Added synonym "RNA interference, negative regulation of translation" to GO:0070549 * Added general dbxref GOC:mah to synonym RNA interference, negative regulation of translation of GO:0070549 * Changed synonym scope of GO:0070549 from "Related" to "Exact" * Added synonym "multicellular or syncytial spore formation by sporulation" to GO:0075283 * Added general dbxref GOC:tb to synonym multicellular or syncytial spore formation by sporulation of GO:0075283 * Added general dbxref GOC:dph to synonym multicellular or syncytial spore formation by sporulation of GO:0075283 * Changed synonym scope of GO:0075283 from "Related" to "Exact" * Changed name of GO:0090065 from "regulation of RNA interference, production of siRNA" to "regulation of production of siRNA involved in RNA interference" * Changed definition of GO:0090065 from "Any process that modulates the frequency, rate or extent of RNA interference by the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides." to "Any process that modulates the frequency, rate or extent of the production of siRNA, the cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference." * Added definition dbxref GOC:mah to GO:0090065 * Added synonym "regulation of RNA interference, production of siRNA" to GO:0090065 * Added general dbxref GOC:mah to synonym regulation of RNA interference, production of siRNA of GO:0090065 * Changed synonym scope of GO:0090065 from "Related" to "Exact" * Deleted GO:0090065 --OBO_REL:is_a--> GO:0051252 * Created link GO:0090065 -OBO_REL:is_a-> GO:0070920 From gocvs at genome.stanford.edu Mon Sep 14 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 14 Sep 2009 21:30:13 -0700 Subject: [Go-diff] GO update 09/14/2009 Message-ID: <200909150430.n8F4UD84025743@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.786 by 1.787 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created link GO:0015471 -OBO_REL:is_a-> GO:0005337 * Created link GO:0017077 -part_of-> GO:0015992 * Created link GO:0022809 -part_of-> GO:0006811 * Changed name of GO:0022838 from "substrate specific channel activity" to "substrate-specific channel activity" * Created link GO:0022838 -OBO_REL:is_a-> GO:0022891 * Created link GO:0080139 -OBO_REL:is_a-> GO:0046715 From gocvs at genome.stanford.edu Tue Sep 15 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 15 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/15/2009 Message-ID: <200909160430.n8G4UCQt015158@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.787 by 1.789 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070925 * Created object of type obo:TERM with id GO:0090077 * Created object of type obo:TERM with id GO:0090078 * [Changed name of GO:0070925 from "null" to "organelle assembly", Set definition of GO:0070925 to "The aggregation, arrangement and bonding together of a set of components to form an organelle. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.", Added definition dbxref GOC:mah to GO:0070925, Created link GO:0070925 -part_of-> GO:0006996, Created link GO:0070925 -OBO_REL:is_a-> GO:0022607, Assigned namespace "biological_process" to GO:0070925] * Changed name of GO:0070925 from "null" to "organelle assembly" * Set definition of GO:0070925 to "The aggregation, arrangement and bonding together of a set of components to form an organelle. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." * Added definition dbxref GOC:mah to GO:0070925 * Created link GO:0070925 -part_of-> GO:0006996 * Created link GO:0070925 -OBO_REL:is_a-> GO:0022607 * Assigned namespace "biological_process" to GO:0070925 * [Changed name of GO:0090077 from "null" to "foam cell differentiation", Set definition of GO:0090077 to "The process whereby a relatively unspecialized cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.", Added definition dbxref GOC:add to GO:0090077, Added definition dbxref GOC:dph to GO:0090077, Added definition dbxref GOC:tb to GO:0090077, Created link GO:0090077 -OBO_REL:is_a-> GO:0030154, Assigned namespace "biological_process" to GO:0090077] * Changed name of GO:0090077 from "null" to "foam cell differentiation" * Set definition of GO:0090077 to "The process whereby a relatively unspecialized cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." * Added definition dbxref GOC:add to GO:0090077 * Added definition dbxref GOC:dph to GO:0090077 * Added definition dbxref GOC:tb to GO:0090077 * Created link GO:0090077 -OBO_REL:is_a-> GO:0030154 * Assigned namespace "biological_process" to GO:0090077 * [Changed name of GO:0090078 from "null" to "smooth muscle derived foam cell differentiation", Set definition of GO:0090078 to "The process whereby a smooth muscle cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.", Added definition dbxref GOC:add to GO:0090078, Added definition dbxref GOC:dph to GO:0090078, Added definition dbxref GOC:tb to GO:0090078, Created link GO:0090078 -OBO_REL:is_a-> GO:0090077, Assigned namespace "biological_process" to GO:0090078] * Changed name of GO:0090078 from "null" to "smooth muscle derived foam cell differentiation" * Set definition of GO:0090078 to "The process whereby a smooth muscle cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." * Added definition dbxref GOC:add to GO:0090078 * Added definition dbxref GOC:dph to GO:0090078 * Added definition dbxref GOC:tb to GO:0090078 * Created link GO:0090078 -OBO_REL:is_a-> GO:0090077 * Assigned namespace "biological_process" to GO:0090078 * Deleted GO:0000045 --OBO_REL:is_a--> GO:0022607 * Created link GO:0000045 -OBO_REL:is_a-> GO:0070925 * Changed name of GO:0000387 from "spliceosomal snRNP biogenesis" to "spliceosomal snRNP assembly" * Changed definition of GO:0000387 from "The formation and assembly from one or more snRNA and multiple protein components of a ribonucleoprotein complex that in involved in formation of the spliceosome." to "The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome." * Added definition dbxref GOC:mah to GO:0000387 * Added synonym "spliceosomal snRNP biogenesis" to GO:0000387 * Added general dbxref GOC:mah to synonym spliceosomal snRNP biogenesis of GO:0000387 * Deleted GO:0000387 --OBO_REL:is_a--> GO:0022613 * Created link GO:0000387 -OBO_REL:is_a-> GO:0022618 * Deleted GO:0001845 --OBO_REL:is_a--> GO:0022607 * Created link GO:0001845 -OBO_REL:is_a-> GO:0070925 * Created link GO:0005874 -OBO_REL:is_a-> GO:0043234 * Created link GO:0005882 -OBO_REL:is_a-> GO:0043234 * Created link GO:0005884 -OBO_REL:is_a-> GO:0043234 * Changed definition of GO:0009514 from "A microbody that contains the enzymes of the glyoxylate pathway." to "A specialized form of peroxisome that contains the enzymes of the glyoxylate pathway. The glyoxysome is found in some plant cells, notably the cells of germinating seeds." * Added definition dbxref GOC:dhl to GO:0009514 * Deleted GO:0009514 --OBO_REL:is_a--> GO:0042579 * Created link GO:0009514 -OBO_REL:is_a-> GO:0005777 * Changed name of GO:0010742 from "foam cell differentiation" to "macrophage derived foam cell differentiation" * Changed definition of GO:0010742 from "The process whereby a relatively unspecialized monocyte acquires the specialized features of a foam cell. A foam cell is a macrophage containing lipid in small vacuoles." to "The process whereby a monocyte acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." * Deleted GO:0010742 --OBO_REL:is_a--> GO:0030225 * Created link GO:0010742 -OBO_REL:is_a-> GO:0090077 * Changed name of GO:0010743 from "regulation of foam cell differentiation" to "regulation of macrophage derived foam cell differentiation" * Changed definition of GO:0010743 from "Any process that modulates the rate, frequency or extent of foam cell differentiation. Foam cell differentiation is the process whereby a relatively unspecialized monocyte acquires the specialized features of a foam cell. A foam cell is a macrophage containing lipid in small vacuoles." to "Any process that modulates the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process whereby a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." * Deleted GO:0010743 --OBO_REL:is_a--> GO:0045649 * Created link GO:0010743 -OBO_REL:is_a-> GO:0045595 * Changed name of GO:0010744 from "positive regulation of foam cell differentiation" to "positive regulation of macrophage derived foam cell differentiation" * Changed definition of GO:0010744 from "Any process that increases the rate, frequency or extent of foam cell differentiation. Foam cell differentiation is the process whereby a relatively unspecialized monocyte acquires the specialized features of a foam cell. A foam cell is a macrophage containing lipid in small vacuoles." to "Any process that increases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process whereby a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." * Added definition dbxref GOC:add to GO:0010744 * Deleted GO:0010744 --OBO_REL:is_a--> GO:0045651 * Created link GO:0010744 -OBO_REL:is_a-> GO:0045597 * Changed name of GO:0010745 from "negative regulation of foam cell differentiation" to "negative regulation of macrophage derived foam cell differentiation" * Changed definition of GO:0010745 from "Any process that decreases the rate, frequency or extent of foam cell differentiation. Foam cell differentiation is the process whereby a relatively unspecialized monocyte acquires the specialized features of a foam cell. A foam cell is a macrophage containing lipid in small vacuoles." to "Any process that decreases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process whereby a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." * Deleted GO:0010745 --OBO_REL:is_a--> GO:0045650 * Created link GO:0010745 -OBO_REL:is_a-> GO:0045596 * Deleted GO:0031908 --OBO_REL:is_a--> GO:0031907 * Created link GO:0031908 -OBO_REL:is_a-> GO:0005782 * Deleted GO:0035038 --OBO_REL:is_a--> GO:0022607 * Created link GO:0035038 -OBO_REL:is_a-> GO:0070925 * Deleted GO:0035039 --OBO_REL:is_a--> GO:0022607 * Created link GO:0035039 -OBO_REL:is_a-> GO:0070925 * Deleted GO:0046861 --OBO_REL:is_a--> GO:0031903 * Deleted GO:0046861 --OBO_REL:is_a--> GO:0044438 * Created link GO:0046861 -OBO_REL:is_a-> GO:0005778 * Deleted GO:0051225 --OBO_REL:is_a--> GO:0022607 * Created link GO:0051225 -OBO_REL:is_a-> GO:0070925 * Changed definition of GO:0090075 from "A process whereby the extent of muscle contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases." to "A process whereby the extent of muscle contraction is reduced. Muscle relaxation involves the removal of calcium from the cytoplasm to the sarcoplasmic reticulum lumen through the action of Ca2+ ATPases." From gocvs at genome.stanford.edu Wed Sep 16 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 16 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/16/2009 Message-ID: <200909170430.n8H4UCGw005351@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.789 by 1.791 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070926 * Created object of type obo:TERM with id GO:0070927 * Created object of type obo:TERM with id GO:0070928 * Created object of type obo:TERM with id GO:0070929 * Created object of type obo:TERM with id GO:0070930 * Created object of type obo:TERM with id GO:0070931 * Created object of type obo:TERM with id GO:0070932 * Created object of type obo:TERM with id GO:0070933 * [Changed name of GO:0070926 from "null" to "regulation of ATP:ADP antiporter activity", Set definition of GO:0070926 to "Any process that modulates the activity of an ATP:ADP antiporter.", Added definition dbxref GOC:mah to GO:0070926, Created link GO:0070926 -regulates-> GO:0005471, Created link GO:0070926 -OBO_REL:is_a-> GO:0022898, Assigned namespace "biological_process" to GO:0070926] * Changed name of GO:0070926 from "null" to "regulation of ATP:ADP antiporter activity" * Set definition of GO:0070926 to "Any process that modulates the activity of an ATP:ADP antiporter." * Added definition dbxref GOC:mah to GO:0070926 * Created link GO:0070926 -regulates-> GO:0005471 * Created link GO:0070926 -OBO_REL:is_a-> GO:0022898 * Assigned namespace "biological_process" to GO:0070926 * [Changed name of GO:0070927 from "null" to "negative regulation of ATP:ADP antiporter activity", Set definition of GO:0070927 to "Any process that stops or reduces the activity of an ATP:ADP antiporter.", Added definition dbxref GOC:mah to GO:0070927, Added synonym "down regulation of ATP:ADP antiporter activity" to GO:0070927, Added general dbxref GOC:mah to synonym down regulation of ATP:ADP antiporter activity of GO:0070927, Changed synonym scope of GO:0070927 from "Related" to "Exact", Added synonym "down-regulation of ATP:ADP antiporter activity" to GO:0070927, Added general dbxref GOC:mah to synonym down-regulation of ATP:ADP antiporter activity of GO:0070927, Changed synonym scope of GO:0070927 from "Related" to "Exact", Added synonym "downregulation of ATP:ADP antiporter activity" to GO:0070927, Added general dbxref GOC:mah to synonym downregulation of ATP:ADP antiporter activity of GO:0070927, Changed synonym scope of GO:0070927 from "Related" to "Exact", Added synonym "inhibition of ATP:ADP antiporter activity" to GO:0070927, Added general dbxref GOC:mah to synonym inhibition of ATP:ADP antiporter activity of GO:0070927, Changed synonym scope of GO:0070927 from "Related" to "Narrow", Created link GO:0070927 -OBO_REL:is_a-> GO:0070926, Created link GO:0070927 -negatively_regulates-> GO:0005471, Created link GO:0070927 -OBO_REL:is_a-> GO:0032410, Assigned namespace "biological_process" to GO:0070927] * Changed name of GO:0070927 from "null" to "negative regulation of ATP:ADP antiporter activity" * Set definition of GO:0070927 to "Any process that stops or reduces the activity of an ATP:ADP antiporter." * Added definition dbxref GOC:mah to GO:0070927 * Added synonym "down regulation of ATP:ADP antiporter activity" to GO:0070927 * Added general dbxref GOC:mah to synonym down regulation of ATP:ADP antiporter activity of GO:0070927 * Changed synonym scope of GO:0070927 from "Related" to "Exact" * Added synonym "down-regulation of ATP:ADP antiporter activity" to GO:0070927 * Added general dbxref GOC:mah to synonym down-regulation of ATP:ADP antiporter activity of GO:0070927 * Changed synonym scope of GO:0070927 from "Related" to "Exact" * Added synonym "downregulation of ATP:ADP antiporter activity" to GO:0070927 * Added general dbxref GOC:mah to synonym downregulation of ATP:ADP antiporter activity of GO:0070927 * Changed synonym scope of GO:0070927 from "Related" to "Exact" * Added synonym "inhibition of ATP:ADP antiporter activity" to GO:0070927 * Added general dbxref GOC:mah to synonym inhibition of ATP:ADP antiporter activity of GO:0070927 * Changed synonym scope of GO:0070927 from "Related" to "Narrow" * Created link GO:0070927 -OBO_REL:is_a-> GO:0070926 * Created link GO:0070927 -negatively_regulates-> GO:0005471 * Created link GO:0070927 -OBO_REL:is_a-> GO:0032410 * Assigned namespace "biological_process" to GO:0070927 * [Changed name of GO:0070928 from "null" to "regulation of mRNA stability, ncRNA-mediated", Set definition of GO:0070928 to "Any process, mediated by small non-coding RNAs, that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.", Added definition dbxref GOC:jh2 to GO:0070928, Added synonym "ncRNA-mediated regulation of mRNA stability" to GO:0070928, Added general dbxref GOC:mah to synonym ncRNA-mediated regulation of mRNA stability of GO:0070928, Changed synonym scope of GO:0070928 from "Related" to "Exact", Added synonym "regulation of mRNA stability, non-coding RNA-mediated" to GO:0070928, Added general dbxref GOC:mah to synonym regulation of mRNA stability, non-coding RNA-mediated of GO:0070928, Changed synonym scope of GO:0070928 from "Related" to "Exact", Created link GO:0070928 -OBO_REL:is_a-> GO:0043488, Assigned namespace "biological_process" to GO:0070928] * Changed name of GO:0070928 from "null" to "regulation of mRNA stability, ncRNA-mediated" * Set definition of GO:0070928 to "Any process, mediated by small non-coding RNAs, that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs." * Added definition dbxref GOC:jh2 to GO:0070928 * Added synonym "ncRNA-mediated regulation of mRNA stability" to GO:0070928 * Added general dbxref GOC:mah to synonym ncRNA-mediated regulation of mRNA stability of GO:0070928 * Changed synonym scope of GO:0070928 from "Related" to "Exact" * Added synonym "regulation of mRNA stability, non-coding RNA-mediated" to GO:0070928 * Added general dbxref GOC:mah to synonym regulation of mRNA stability, non-coding RNA-mediated of GO:0070928 * Changed synonym scope of GO:0070928 from "Related" to "Exact" * Created link GO:0070928 -OBO_REL:is_a-> GO:0043488 * Assigned namespace "biological_process" to GO:0070928 * [Changed name of GO:0070929 from "null" to "trans-translation", Set definition of GO:0070929 to "A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes.", Added definition dbxref GOC:jh2 to GO:0070929, Added definition dbxref GOC:mah to GO:0070929, Created link GO:0070929 -OBO_REL:is_a-> GO:0006414, Assigned namespace "biological_process" to GO:0070929] * Changed name of GO:0070929 from "null" to "trans-translation" * Set definition of GO:0070929 to "A translational elongation process in which transfer of a translating ribosome from one mRNA to another RNA template takes place. Trans-translation occurs during tmRNA release of stalled ribosomes." * Added definition dbxref GOC:jh2 to GO:0070929 * Added definition dbxref GOC:mah to GO:0070929 * Created link GO:0070929 -OBO_REL:is_a-> GO:0006414 * Assigned namespace "biological_process" to GO:0070929 * [Changed name of GO:0070930 from "null" to "co-translational protein tagging", Added comment "Note that this term is not a child of 'co-translational protein modification process ; GO:0043686' because co-translational protein modification implies modification of a previously incorporated amino acid in a nascent chain, rather than addition of new sequence to the C-terminus.", Set definition of GO:0070930 to "A protein modification process in which a polypeptide is added to a nascent polypeptide cotranslationally by trans-translation.", Added definition dbxref GOC:jh2 to GO:0070930, Added definition dbxref GOC:mah to GO:0070930, Added synonym "cotranslational protein tagging" to GO:0070930, Added general dbxref GOC:mah to synonym cotranslational protein tagging of GO:0070930, Changed synonym scope of GO:0070930 from "Related" to "Exact", Added synonym "protein modification by trans-translation" to GO:0070930, Added general dbxref GOC:mah to synonym protein modification by trans-translation of GO:0070930, Changed synonym scope of GO:0070930 from "Related" to "Exact", Created link GO:0070930 -OBO_REL:is_a-> GO:0006464, Assigned namespace "biological_process" to GO:0070930] * Changed name of GO:0070930 from "null" to "co-translational protein tagging" * Added comment "Note that this term is not a child of 'co-translational protein modification process ; GO:0043686' because co-translational protein modification implies modification of a previously incorporated amino acid in a nascent chain, rather than addition of new sequence to the C-terminus." * Set definition of GO:0070930 to "A protein modification process in which a polypeptide is added to a nascent polypeptide cotranslationally by trans-translation." * Added definition dbxref GOC:jh2 to GO:0070930 * Added definition dbxref GOC:mah to GO:0070930 * Added synonym "cotranslational protein tagging" to GO:0070930 * Added general dbxref GOC:mah to synonym cotranslational protein tagging of GO:0070930 * Changed synonym scope of GO:0070930 from "Related" to "Exact" * Added synonym "protein modification by trans-translation" to GO:0070930 * Added general dbxref GOC:mah to synonym protein modification by trans-translation of GO:0070930 * Changed synonym scope of GO:0070930 from "Related" to "Exact" * Created link GO:0070930 -OBO_REL:is_a-> GO:0006464 * Assigned namespace "biological_process" to GO:0070930 * [Changed name of GO:0070931 from "null" to "Golgi-associated vesicle lumen", Set definition of GO:0070931 to "The volume enclosed by the membrane of a Golgi-associated vesicle.", Added definition dbxref GOC:mah to GO:0070931, Created link GO:0070931 -OBO_REL:is_a-> GO:0044431, Created link GO:0070931 -part_of-> GO:0005798, Created link GO:0070931 -OBO_REL:is_a-> GO:0060205, Assigned namespace "cellular_component" to GO:0070931] * Changed name of GO:0070931 from "null" to "Golgi-associated vesicle lumen" * Set definition of GO:0070931 to "The volume enclosed by the membrane of a Golgi-associated vesicle." * Added definition dbxref GOC:mah to GO:0070931 * Created link GO:0070931 -OBO_REL:is_a-> GO:0044431 * Created link GO:0070931 -part_of-> GO:0005798 * Created link GO:0070931 -OBO_REL:is_a-> GO:0060205 * Assigned namespace "cellular_component" to GO:0070931 * [Changed name of GO:0070932 from "null" to "histone H3 deacetylation", Set definition of GO:0070932 to "The modification of histone H3 by the removal of one or more acetyl groups.", Added definition dbxref GOC:rl to GO:0070932, Created link GO:0070932 -OBO_REL:is_a-> GO:0016575, Assigned namespace "biological_process" to GO:0070932] * Changed name of GO:0070932 from "null" to "histone H3 deacetylation" * Set definition of GO:0070932 to "The modification of histone H3 by the removal of one or more acetyl groups." * Added definition dbxref GOC:rl to GO:0070932 * Created link GO:0070932 -OBO_REL:is_a-> GO:0016575 * Assigned namespace "biological_process" to GO:0070932 * [Changed name of GO:0070933 from "null" to "histone H4 deacetylation", Set definition of GO:0070933 to "The modification of histone H4 by the removal of one or more acetyl groups.", Added definition dbxref GOC:rl to GO:0070933, Created link GO:0070933 -OBO_REL:is_a-> GO:0016575, Assigned namespace "biological_process" to GO:0070933] * Changed name of GO:0070933 from "null" to "histone H4 deacetylation" * Set definition of GO:0070933 to "The modification of histone H4 by the removal of one or more acetyl groups." * Added definition dbxref GOC:rl to GO:0070933 * Created link GO:0070933 -OBO_REL:is_a-> GO:0016575 * Assigned namespace "biological_process" to GO:0070933 * Created link GO:0000271 -OBO_REL:is_a-> GO:0005976 * Created link GO:0000289 -OBO_REL:is_a-> GO:0031124 * Created link GO:0001763 -OBO_REL:is_a-> GO:0032501 * Created link GO:0004430 -OBO_REL:is_a-> GO:0001727 * Deleted GO:0009448 --OBO_REL:is_a--> GO:0019605 * Deleted GO:0009449 --OBO_REL:is_a--> GO:0046358 * Deleted GO:0009450 --OBO_REL:is_a--> GO:0046359 * Changed definition of GO:0030008 from "A large complex present on the cis-Golgi that acts prior to SNARE complex assembly to mediate vesicle docking and fusion." to "A large complex present on the cis-Golgi that acts prior to SNARE complex assembly to mediate vesicle docking and fusion. Ras guanyl-nucleotide exchange factor activity has been demonstrated for this complex in S. cerevisiae." * Added definition dbxref GOC:vw to GO:0030008 * Added definition dbxref PMID:17287728 to GO:0030008 * Added synonym "TRAPP1" to GO:0030008 * Added general dbxref GOC:vw to synonym TRAPP1 of GO:0030008 * Changed synonym scope of GO:0030008 from "Related" to "Narrow" * Added synonym "TRAPP2" to GO:0030008 * Added general dbxref GOC:vw to synonym TRAPP2 of GO:0030008 * Changed synonym scope of GO:0030008 from "Related" to "Narrow" * Deleted GO:0030278 --OBO_REL:is_a--> GO:0046850 * Deleted GO:0030279 --OBO_REL:is_a--> GO:0046851 * Deleted GO:0031138 --OBO_REL:is_a--> GO:0048523 * Deleted GO:0031139 --OBO_REL:is_a--> GO:0048522 * Deleted GO:0042102 --OBO_REL:is_a--> GO:0070668 * Deleted GO:0042130 --OBO_REL:is_a--> GO:0070667 * Deleted GO:0045778 --OBO_REL:is_a--> GO:0046852 * Changed definition of GO:0090077 from "The process whereby a relatively unspecialized cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." to "The process whereby a relatively unspecialized cell acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions." From gocvs at genome.stanford.edu Thu Sep 17 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 17 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/17/2009 Message-ID: <200909180430.n8I4UC78002357@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.791 by 1.793 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060911 * Created object of type obo:TERM with id GO:0060912 * Created object of type obo:TERM with id GO:0060913 * Created object of type obo:TERM with id GO:0060914 * [Changed name of GO:0060911 from "null" to "cardiac cell fate commitment", Set definition of GO:0060911 to "The commitment of cells to specific cardiac cell fates and their capacity to differentiate into cardiac cells. Cardiac cells are cells that comprise the organ which pumps blood through the circulatory system.", Added definition dbxref GOC:mtg_heart to GO:0060911, Created link GO:0060911 -part_of-> GO:0035051, Created link GO:0060911 -OBO_REL:is_a-> GO:0045165, Assigned namespace "biological_process" to GO:0060911] * Changed name of GO:0060911 from "null" to "cardiac cell fate commitment" * Set definition of GO:0060911 to "The commitment of cells to specific cardiac cell fates and their capacity to differentiate into cardiac cells. Cardiac cells are cells that comprise the organ which pumps blood through the circulatory system." * Added definition dbxref GOC:mtg_heart to GO:0060911 * Created link GO:0060911 -part_of-> GO:0035051 * Created link GO:0060911 -OBO_REL:is_a-> GO:0045165 * Assigned namespace "biological_process" to GO:0060911 * [Changed name of GO:0060912 from "null" to "cardiac cell fate specification", Set definition of GO:0060912 to "The process involved in the specification of cardiac cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.", Added definition dbxref GOC:mtg_heart to GO:0060912, Created link GO:0060912 -part_of-> GO:0060911, Created link GO:0060912 -OBO_REL:is_a-> GO:0001708, Assigned namespace "biological_process" to GO:0060912] * Changed name of GO:0060912 from "null" to "cardiac cell fate specification" * Set definition of GO:0060912 to "The process involved in the specification of cardiac cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment." * Added definition dbxref GOC:mtg_heart to GO:0060912 * Created link GO:0060912 -part_of-> GO:0060911 * Created link GO:0060912 -OBO_REL:is_a-> GO:0001708 * Assigned namespace "biological_process" to GO:0060912 * [Changed name of GO:0060913 from "null" to "cardiac cell fate determination", Set definition of GO:0060913 to "Process involved in cardiac cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.", Added definition dbxref GOC:mtg_heart to GO:0060913, Created link GO:0060913 -part_of-> GO:0060911, Created link GO:0060913 -OBO_REL:is_a-> GO:0001709, Assigned namespace "biological_process" to GO:0060913] * Changed name of GO:0060913 from "null" to "cardiac cell fate determination" * Set definition of GO:0060913 to "Process involved in cardiac cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment." * Added definition dbxref GOC:mtg_heart to GO:0060913 * Created link GO:0060913 -part_of-> GO:0060911 * Created link GO:0060913 -OBO_REL:is_a-> GO:0001709 * Assigned namespace "biological_process" to GO:0060913 * [Changed name of GO:0060914 from "null" to "heart formation", Set definition of GO:0060914 to "The developmental process pertaining to the initial formation of the heart from unspecified parts. This process begins with the specific processes that contribute to the appearance of the heart field and ends when the structural rudiment is recognizable.", Added definition dbxref GOC:mtg_heart to GO:0060914, Created link GO:0060914 -part_of-> GO:0003007, Created link GO:0060914 -OBO_REL:is_a-> GO:0048645, Assigned namespace "biological_process" to GO:0060914] * Changed name of GO:0060914 from "null" to "heart formation" * Set definition of GO:0060914 to "The developmental process pertaining to the initial formation of the heart from unspecified parts. This process begins with the specific processes that contribute to the appearance of the heart field and ends when the structural rudiment is recognizable." * Added definition dbxref GOC:mtg_heart to GO:0060914 * Created link GO:0060914 -part_of-> GO:0003007 * Created link GO:0060914 -OBO_REL:is_a-> GO:0048645 * Assigned namespace "biological_process" to GO:0060914 * Deleted GO:0007510 --OBO_REL:is_a--> GO:0001709 * Created link GO:0007510 -OBO_REL:is_a-> GO:0060913 * Deleted GO:0015301 --OBO_REL:is_a--> GO:0015297 * Created link GO:0015301 -OBO_REL:is_a-> GO:0015300 * Deleted GO:0035052 --OBO_REL:is_a--> GO:0045165 * Created link GO:0035052 -OBO_REL:is_a-> GO:0060911 * Deleted GO:0035053 --OBO_REL:is_a--> GO:0045165 * Created link GO:0035053 -OBO_REL:is_a-> GO:0060911 * Deleted GO:0042684 --OBO_REL:is_a--> GO:0045165 * Created link GO:0042684 -OBO_REL:is_a-> GO:0060911 * Deleted GO:0042685 --OBO_REL:is_a--> GO:0001708 * Created link GO:0042685 -OBO_REL:is_a-> GO:0060912 * Changed definition of GO:0048228 from "OBSOLETE. Any process that establish the spatial arrangement of actin cortical patches. An actin cortical patch is a discrete actin-containing structure found at the plasma membrane in fungal cells." to "OBSOLETE. Any process that establishes the spatial arrangement of actin cortical patches. An actin cortical patch is a discrete actin-containing structure found at the plasma membrane in fungal cells." * Changed definition of GO:0048311 from "Any process that establish the spatial arrangement of mitochondria between and within cells." to "Any process that establishes the spatial arrangement of mitochondria between and within cells." * Changed definition of GO:0048312 from "Any process that establish the spatial arrangement of mitochondria within the cell." to "Any process that establishes the spatial arrangement of mitochondria within the cell." * Deleted GO:0060379 --part_of--> GO:0007507 * Created link GO:0060379 -OBO_REL:is_a-> GO:0035051 * Changed definition of GO:0071025 from "The processes involved in identifying and degrading defective or aberrant RNAs." to "The set of processes involved in identifying and degrading defective or aberrant RNAs." * Changed definition of GO:0071026 from "The processes involved in identifying and degrading defective or aberrant RNAs within the cytoplasm." to "The set of processes involved in identifying and degrading defective or aberrant RNAs within the cytoplasm." * Changed definition of GO:0071027 from "The processes involved in identifying and degrading defective or aberrant RNAs within the nucleus." to "The set of processes involved in identifying and degrading defective or aberrant RNAs within the nucleus." * Changed definition of GO:0071028 from "The processes involved in identifying and degrading defective or aberrant mRNAs within the nucleus." to "The set of processes involved in identifying and degrading defective or aberrant mRNAs within the nucleus." * Changed definition of GO:0071029 from "The processes involved in identifying and degrading defective or aberrant ncRNAs within the nucleus." to "The set of processes involved in identifying and degrading defective or aberrant ncRNAs within the nucleus." * Changed definition of GO:0071030 from "The processes involved in identifying and degrading incorrectly spliced pre-mRNAs within the nucleus." to "The set of processes involved in identifying and degrading incorrectly spliced pre-mRNAs within the nucleus." * Changed definition of GO:0071031 from "The processes involved in identifying and degrading mRNAs with incorrectly formed 3'-ends within the nucleus." to "The set of processes involved in identifying and degrading mRNAs with incorrectly formed 3'-ends within the nucleus." * Changed definition of GO:0071032 from "The processes involved in identifying and degrading incorrectly formed or aberrant nuclear mRNPs docked at the nuclear pore complex prior to export to the cytoplasm." to "The set of processes involved in identifying and degrading incorrectly formed or aberrant nuclear mRNPs docked at the nuclear pore complex prior to export to the cytoplasm." * Changed definition of GO:0075255 from "The processes leading to the formation of a thick-walled resting or over-wintering spore produced by the rust fungi (Uredinales) and smut fungi (Ustilaginales) in which karyogamy occurs." to "The set of processes leading to the formation of a thick-walled resting or over-wintering spore produced by the rust fungi (Uredinales) and smut fungi (Ustilaginales) in which karyogamy occurs." From gocvs at genome.stanford.edu Fri Sep 18 21:30:11 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 18 Sep 2009 21:30:11 -0700 Subject: [Go-diff] GO update 09/18/2009 Message-ID: <200909190430.n8J4UB0J027617@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.793 by 1.795 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060915 * Created object of type obo:TERM with id GO:0060916 * Created object of type obo:TERM with id GO:0060917 * [Changed name of GO:0060915 from "null" to "mesenchymal cell differentiation involved in lung development", Set definition of GO:0060915 to "The process whereby a relatively unspecialized cell acquires specialized features of a mesenchymal cell of the lung. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types.", Added definition dbxref GOC:dph to GO:0060915, Created link GO:0060915 -part_of-> GO:0030324, Created link GO:0060915 -OBO_REL:is_a-> GO:0048762, Assigned namespace "biological_process" to GO:0060915] * Changed name of GO:0060915 from "null" to "mesenchymal cell differentiation involved in lung development" * Set definition of GO:0060915 to "The process whereby a relatively unspecialized cell acquires specialized features of a mesenchymal cell of the lung. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types." * Added definition dbxref GOC:dph to GO:0060915 * Created link GO:0060915 -part_of-> GO:0030324 * Created link GO:0060915 -OBO_REL:is_a-> GO:0048762 * Assigned namespace "biological_process" to GO:0060915 * [Changed name of GO:0060916 from "null" to "mesenchymal cell proliferation involved in lung development", Set definition of GO:0060916 to "The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population that contributes to the progression of the lung over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.", Added definition dbxref GOC:dph to GO:0060916, Created link GO:0060916 -part_of-> GO:0030324, Created link GO:0060916 -OBO_REL:is_a-> GO:0010463, Assigned namespace "biological_process" to GO:0060916] * Changed name of GO:0060916 from "null" to "mesenchymal cell proliferation involved in lung development" * Set definition of GO:0060916 to "The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population that contributes to the progression of the lung over time. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." * Added definition dbxref GOC:dph to GO:0060916 * Created link GO:0060916 -part_of-> GO:0030324 * Created link GO:0060916 -OBO_REL:is_a-> GO:0010463 * Assigned namespace "biological_process" to GO:0060916 * [Changed name of GO:0060917 from "null" to "regulation of 1,6-beta-glucan biosynthetic process", Set definition of GO:0060917 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of beta-1,6 glucans.", Added definition dbxref GOC:dph to GO:0060917, Added definition dbxref GOC:tb to GO:0060917, Created link GO:0060917 -regulates-> GO:0006078, Created link GO:0060917 -OBO_REL:is_a-> GO:0032951, Assigned namespace "biological_process" to GO:0060917] * Changed name of GO:0060917 from "null" to "regulation of 1,6-beta-glucan biosynthetic process" * Set definition of GO:0060917 to "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of beta-1,6 glucans." * Added definition dbxref GOC:dph to GO:0060917 * Added definition dbxref GOC:tb to GO:0060917 * Created link GO:0060917 -regulates-> GO:0006078 * Created link GO:0060917 -OBO_REL:is_a-> GO:0032951 * Assigned namespace "biological_process" to GO:0060917 * Deleted GO:0000723 --OBO_REL:is_a--> GO:0060249 * Created link GO:0002090 -OBO_REL:is_a-> GO:0060255 * Created link GO:0002091 -OBO_REL:is_a-> GO:0010605 * Created link GO:0002092 -OBO_REL:is_a-> GO:0010604 * Created link GO:0007096 -OBO_REL:is_a-> GO:0007346 * Created link GO:0010505 -OBO_REL:is_a-> GO:0090068 * Created link GO:0010696 -OBO_REL:is_a-> GO:0090068 * Created link GO:0010971 -OBO_REL:is_a-> GO:0090068 * Created link GO:0010981 -OBO_REL:is_a-> GO:0050794 * Added synonym "oesophagus smooth muscle contraction" to GO:0014846 * Added general dbxref GOC:dph to synonym oesophagus smooth muscle contraction of GO:0014846 * Deleted GO:0019827 --OBO_REL:is_a--> GO:0060249 * Created link GO:0030278 -OBO_REL:is_a-> GO:0051239 * Created link GO:0031536 -OBO_REL:is_a-> GO:0048522 * Deleted GO:0031566 --OBO_REL:is_a--> GO:0060249 * Created link GO:0031566 -OBO_REL:is_a-> GO:0043954 * Deleted GO:0032205 --OBO_REL:is_a--> GO:0032845 * Deleted GO:0032206 --OBO_REL:is_a--> GO:0032846 * Created link GO:0032877 -OBO_REL:is_a-> GO:0090068 * Deleted GO:0034331 --OBO_REL:is_a--> GO:0060249 * Deleted GO:0043055 --OBO_REL:is_a--> GO:0060249 * Deleted GO:0045494 --OBO_REL:is_a--> GO:0060249 * Created link GO:0045494 -OBO_REL:is_a-> GO:0043954 * Created link GO:0045750 -OBO_REL:is_a-> GO:0090068 * Created link GO:0045836 -OBO_REL:is_a-> GO:0090068 * Created link GO:0045840 -OBO_REL:is_a-> GO:0090068 * Created link GO:0045876 -OBO_REL:is_a-> GO:0090068 * Created link GO:0046607 -OBO_REL:is_a-> GO:0090068 * Changed name of GO:0046716 from "muscle maintenance" to "muscle homeostasis" * Created link GO:0048583 -OBO_REL:is_a-> GO:0070920 * Created link GO:0055018 -OBO_REL:is_a-> GO:0060284 * Created link GO:0055019 -OBO_REL:is_a-> GO:0010721 * Created link GO:0055020 -OBO_REL:is_a-> GO:0010720 * Created link GO:0060211 -OBO_REL:is_a-> GO:0031440 * Changed name of GO:0060250 from "germ-line stem-cell niche maintenance" to "germ-line stem-cell niche homeostasis" * Added synonym "germ-line stem-cell niche maintenance" to GO:0060250 * Added general dbxref GOC:tb to synonym germ-line stem-cell niche maintenance of GO:0060250 * Added general dbxref GOC:dph to synonym germ-line stem-cell niche maintenance of GO:0060250 * Changed synonym scope of GO:0060250 from "Related" to "Exact" * Created link GO:0060502 -part_of-> GO:0060428 * Created link GO:0060903 -OBO_REL:is_a-> GO:0090068 * Changed name of GO:0070050 from "neuron maintenance" to "neuron homeostasis" * Added synonym "neuron maintenance" to GO:0070050 * Changed synonym scope of GO:0070050 from "Related" to "Exact" * Created link GO:0070050 -OBO_REL:is_a-> GO:0060249 * Created link GO:0070318 -OBO_REL:is_a-> GO:0090068 * Created link GO:0090068 -OBO_REL:is_a-> GO:0048522 * Created link GO:0090069 -OBO_REL:is_a-> GO:0050794 * Created link GO:0090070 -OBO_REL:is_a-> GO:0048522 * Created link GO:0090071 -OBO_REL:is_a-> GO:0048523 * Created link GO:0090073 -OBO_REL:is_a-> GO:0032092 * Created link GO:0090074 -OBO_REL:is_a-> GO:0032091 From gocvs at genome.stanford.edu Mon Sep 21 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 21 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/21/2009 Message-ID: <200909220430.n8M4UCkp030659@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.795 by 1.796 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0070934 * Created object of type obo:TERM with id GO:0070935 * Created object of type obo:TERM with id GO:0070936 * [Changed name of GO:0070934 from "null" to "CRD-mediated mRNA stabilization", Set definition of GO:0070934 to "An mRNA stabilization process in which one or more RNA-binding proteins associate with a sequence in the open reading frame called the coding region instability determinant (CRD).", Added definition dbxref GOC:mah to GO:0070934, Added definition dbxref PMID:19029303 to GO:0070934, Added synonym "coding region determinant-mediated mRNA stabilization" to GO:0070934, Added general dbxref GOC:mah to synonym coding region determinant-mediated mRNA stabilization of GO:0070934, Changed synonym scope of GO:0070934 from "Related" to "Exact", Created link GO:0070934 -OBO_REL:is_a-> GO:0048255, Assigned namespace "biological_process" to GO:0070934] * Changed name of GO:0070934 from "null" to "CRD-mediated mRNA stabilization" * Set definition of GO:0070934 to "An mRNA stabilization process in which one or more RNA-binding proteins associate with a sequence in the open reading frame called the coding region instability determinant (CRD)." * Added definition dbxref GOC:mah to GO:0070934 * Added definition dbxref PMID:19029303 to GO:0070934 * Added synonym "coding region determinant-mediated mRNA stabilization" to GO:0070934 * Added general dbxref GOC:mah to synonym coding region determinant-mediated mRNA stabilization of GO:0070934 * Changed synonym scope of GO:0070934 from "Related" to "Exact" * Created link GO:0070934 -OBO_REL:is_a-> GO:0048255 * Assigned namespace "biological_process" to GO:0070934 * [Changed name of GO:0070935 from "null" to "3'-UTR-mediated mRNA stabilization", Set definition of GO:0070935 to "An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.", Added definition dbxref GOC:mah to GO:0070935, Added definition dbxref PMID:19029303 to GO:0070935, Added synonym "3'-untranslated region-mediated mRNA stabilization" to GO:0070935, Added general dbxref GOC:mah to synonym 3'-untranslated region-mediated mRNA stabilization of GO:0070935, Changed synonym scope of GO:0070935 from "Related" to "Exact", Created link GO:0070935 -OBO_REL:is_a-> GO:0048255, Assigned namespace "biological_process" to GO:0070935] * Changed name of GO:0070935 from "null" to "3'-UTR-mediated mRNA stabilization" * Set definition of GO:0070935 to "An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA." * Added definition dbxref GOC:mah to GO:0070935 * Added definition dbxref PMID:19029303 to GO:0070935 * Added synonym "3'-untranslated region-mediated mRNA stabilization" to GO:0070935 * Added general dbxref GOC:mah to synonym 3'-untranslated region-mediated mRNA stabilization of GO:0070935 * Changed synonym scope of GO:0070935 from "Related" to "Exact" * Created link GO:0070935 -OBO_REL:is_a-> GO:0048255 * Assigned namespace "biological_process" to GO:0070935 * [Changed name of GO:0070936 from "null" to "protein K48-linked ubiquitination", Set definition of GO:0070936 to "A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.", Added definition dbxref GOC:cvs to GO:0070936, Added definition dbxref PMID:15556404 to GO:0070936, Created link GO:0070936 -OBO_REL:is_a-> GO:0016567, Assigned namespace "biological_process" to GO:0070936] * Changed name of GO:0070936 from "null" to "protein K48-linked ubiquitination" * Set definition of GO:0070936 to "A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation." * Added definition dbxref GOC:cvs to GO:0070936 * Added definition dbxref PMID:15556404 to GO:0070936 * Created link GO:0070936 -OBO_REL:is_a-> GO:0016567 * Assigned namespace "biological_process" to GO:0070936 * Changed definition of GO:0000439 from "A complex that contains kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. In S. cerevisiae, it is composed of the 5-subunit core (Rad3p, Tfb1p, Tfb2p, Ssl1p and Tfb4p), Ssl2p, and TFIIK (Kin28p, Ccl1p, and Tfb3p). All of the subunits have equivalents in humans: the 5 subunit core is composed of ERCC2, p62, p55, p44, p34; the equivalent of the TFIIK subcomplex is composed of MO15, Mat1, and a cyclin; the human equivalent of Ssl2p is XPB." to "The 5 subunit core of TFIIH that has tightly associated subunits and is found in both the general transcription factor holo-TFIIH and in the nucleotide-excision repair factor 3 complex. In S. cerevisiae, it is composed of Rad3, Tfb1, Tfb2, Ssl1, Tfb4. In humans, it is composed of XPD, p62, p55, p44, p34." * Changed definition of GO:0001656 from "The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is the excretory organ of the fetus which develops into the kidney and is formed from the rear portion of the nephrogenic cord." to "The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord." * Added definition dbxref GOC:bf to GO:0001656 * Changed definition of GO:0001823 from "The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is a transient excretory organ of the embryo." to "The process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney." * Added definition dbxref PMID:10535314 to GO:0001823 * Changed name of GO:0005633 from "ascus lipid droplet" to "ascus lipid particle" * Added synonym "ascus lipid droplet" to GO:0005633 * Added general dbxref GOC:curators to synonym ascus lipid droplet of GO:0005633 * Changed synonym scope of GO:0005633 from "Related" to "Exact" * Added synonym "polyphosphate polymerase activity" to GO:0008976 * Added general dbxref GOC:curators to synonym polyphosphate polymerase activity of GO:0008976 * Changed synonym scope of GO:0008976 from "Related" to "Exact" * Added synonym "tRNA sulfurtransferase activity" to GO:0016783 * Added general dbxref GOC:mah to synonym tRNA sulfurtransferase activity of GO:0016783 * Changed synonym scope of GO:0016783 from "Related" to "Narrow" * Changed definition of GO:0032154 from "In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin, is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists." to "In animal cells, the first sign of cleavage, or cytokinesis, is the appearance of a shallow groove in the cell surface near the old metaphase plate. A contractile ring containing actin and myosin is located just inside the plasma membrane at the location of the furrow. Ring contraction is associated with centripetal growth of the membrane that deepens the cleavage furrow and divides the cytoplasm of the two daughter cells. While the term 'cleavage furrow' was initially associated with animal cells, such a structure occurs in many other types of cells, including unicellular protists." * Created link GO:0033213 -has_part-> GO:0034755 * Created link GO:0033214 -has_part-> GO:0034755 * Created link GO:0033215 -has_part-> GO:0034755 * Added synonym "tRNA sulfurtransferase activity" to GO:0034227 * Added general dbxref GOC:mah to synonym tRNA sulfurtransferase activity of GO:0034227 * Changed definition of GO:0048793 from "The process whose specific outcome is the progression of the pronephros over time, from its formation to the mature structure. The pronephros is the first of the embryonic kidneys to be established and is the simplest vertebrate excretory organ." to "The process whose specific outcome is the progression of the pronephros over time, from its formation to the mature structure. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life." * Added definition dbxref PMID:10535314 to GO:0048793 * Deleted GO:0048897 --OBO_REL:is_a--> GO:0032502 * Created link GO:0048897 -OBO_REL:is_a-> GO:0042552 From gocvs at genome.stanford.edu Tue Sep 22 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 22 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/22/2009 Message-ID: <200909230430.n8N4UC6m007868@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.796 by 1.798 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003127 * Created object of type obo:TERM with id GO:0003128 * Created object of type obo:TERM with id GO:0003129 * Created object of type obo:TERM with id GO:0003130 * Created object of type obo:TERM with id GO:0003131 * Created object of type obo:TERM with id GO:0003132 * Created object of type obo:TERM with id GO:0003133 * Created object of type obo:TERM with id GO:0003134 * Created object of type obo:TERM with id GO:0003135 * Created object of type obo:TERM with id GO:0003136 * Created object of type obo:TERM with id GO:0003137 * Created object of type obo:TERM with id GO:0003138 * Created object of type obo:TERM with id GO:0003139 * Created object of type obo:TERM with id GO:0003140 * Created object of type obo:TERM with id GO:0003141 * Created object of type obo:TERM with id GO:0003142 * Created object of type obo:TERM with id GO:0003143 * Created object of type obo:TERM with id GO:0003144 * Created object of type obo:TERM with id GO:0003145 * Created object of type obo:TERM with id GO:0003146 * Created object of type obo:TERM with id GO:0003147 * Created object of type obo:TERM with id GO:0003148 * Created object of type obo:TERM with id GO:0003149 * Created object of type obo:TERM with id GO:0003150 * Created object of type obo:TERM with id GO:0003151 * Created object of type obo:TERM with id GO:0070937 * Created object of type obo:TERM with id GO:0070938 * Created object of type obo:TERM with id GO:0070939 * [Changed name of GO:0003127 from "null" to "detection of nodal flow", Set definition of GO:0003127 to "The series of events by which an endogenous stimulus is received by a cilium on a cell and converted to a molecular signal contributing to left/right asymmetry.", Added definition dbxref GOC:heartdev_mtg to GO:0003127, Created link GO:0003127 -part_of-> GO:0007368, Created link GO:0003127 -OBO_REL:is_a-> GO:0009726, Assigned namespace "biological_process" to GO:0003127] * Changed name of GO:0003127 from "null" to "detection of nodal flow" * Set definition of GO:0003127 to "The series of events by which an endogenous stimulus is received by a cilium on a cell and converted to a molecular signal contributing to left/right asymmetry." * Added definition dbxref GOC:heartdev_mtg to GO:0003127 * Created link GO:0003127 -part_of-> GO:0007368 * Created link GO:0003127 -OBO_REL:is_a-> GO:0009726 * Assigned namespace "biological_process" to GO:0003127 * [Changed name of GO:0003128 from "null" to "heart field specification", Set definition of GO:0003128 to "The process by which a specific region of the lateral mesoderm is delineated into the area in which the heart will develop.", Added definition dbxref GOC:heartdev_mtg to GO:0003128, Created link GO:0003128 -part_of-> GO:0060914, Created link GO:0003128 -OBO_REL:is_a-> GO:0010092, Assigned namespace "biological_process" to GO:0003128] * Changed name of GO:0003128 from "null" to "heart field specification" * Set definition of GO:0003128 to "The process by which a specific region of the lateral mesoderm is delineated into the area in which the heart will develop." * Added definition dbxref GOC:heartdev_mtg to GO:0003128 * Created link GO:0003128 -part_of-> GO:0060914 * Created link GO:0003128 -OBO_REL:is_a-> GO:0010092 * Assigned namespace "biological_process" to GO:0003128 * [Changed name of GO:0003129 from "null" to "heart induction", Set definition of GO:0003129 to "The close range interaction between mesoderm and endoderm that causes cells to change their fates and specify the development of the heart.", Added definition dbxref GOC:heartdev_mtg to GO:0003129, Created link GO:0003129 -OBO_REL:is_a-> GO:0001759, Created link GO:0003129 -positively_regulates-> GO:0003128, Assigned namespace "biological_process" to GO:0003129] * Changed name of GO:0003129 from "null" to "heart induction" * Set definition of GO:0003129 to "The close range interaction between mesoderm and endoderm that causes cells to change their fates and specify the development of the heart." * Added definition dbxref GOC:heartdev_mtg to GO:0003129 * Created link GO:0003129 -OBO_REL:is_a-> GO:0001759 * Created link GO:0003129 -positively_regulates-> GO:0003128 * Assigned namespace "biological_process" to GO:0003129 * [Changed name of GO:0003130 from "null" to "BMP signaling pathway involved in heart induction", Set definition of GO:0003130 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to heart induction.", Added definition dbxref GOC:heartdev_mtg to GO:0003130, Created link GO:0003130 -OBO_REL:is_a-> GO:0030509, Created link GO:0003130 -OBO_REL:is_a-> GO:0003134, Assigned namespace "biological_process" to GO:0003130] * Changed name of GO:0003130 from "null" to "BMP signaling pathway involved in heart induction" * Set definition of GO:0003130 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to heart induction." * Added definition dbxref GOC:heartdev_mtg to GO:0003130 * Created link GO:0003130 -OBO_REL:is_a-> GO:0030509 * Created link GO:0003130 -OBO_REL:is_a-> GO:0003134 * Assigned namespace "biological_process" to GO:0003130 * [Changed name of GO:0003131 from "null" to "mesodermal-endodermal cell signaling", Set definition of GO:0003131 to "Any process that mediates the transfer of information from mesodermal cells to endodermal cells.", Added definition dbxref GOC:heartdev_mtg to GO:0003131, Created link GO:0003131 -OBO_REL:is_a-> GO:0007267, Assigned namespace "biological_process" to GO:0003131] * Changed name of GO:0003131 from "null" to "mesodermal-endodermal cell signaling" * Set definition of GO:0003131 to "Any process that mediates the transfer of information from mesodermal cells to endodermal cells." * Added definition dbxref GOC:heartdev_mtg to GO:0003131 * Created link GO:0003131 -OBO_REL:is_a-> GO:0007267 * Assigned namespace "biological_process" to GO:0003131 * [Changed name of GO:0003132 from "null" to "mesodermal-endodermal cell signaling involved in heart induction", Set definition of GO:0003132 to "Any process that mediates the transfer of information from mesodermal cells to endodermal cells that contributes to heart induction.", Added definition dbxref GOC:heartdev_mtg to GO:0003132, Created link GO:0003132 -part_of-> GO:0003129, Created link GO:0003132 -OBO_REL:is_a-> GO:0003131, Assigned namespace "biological_process" to GO:0003132] * Changed name of GO:0003132 from "null" to "mesodermal-endodermal cell signaling involved in heart induction" * Set definition of GO:0003132 to "Any process that mediates the transfer of information from mesodermal cells to endodermal cells that contributes to heart induction." * Added definition dbxref GOC:heartdev_mtg to GO:0003132 * Created link GO:0003132 -part_of-> GO:0003129 * Created link GO:0003132 -OBO_REL:is_a-> GO:0003131 * Assigned namespace "biological_process" to GO:0003132 * [Changed name of GO:0003133 from "null" to "endodermal-mesodermal cell signaling", Set definition of GO:0003133 to "Any process that mediates the transfer of information from endodermal cells to mesodermal cells.", Added definition dbxref GOC:heartdev_mtg to GO:0003133, Created link GO:0003133 -OBO_REL:is_a-> GO:0007267, Assigned namespace "biological_process" to GO:0003133] * Changed name of GO:0003133 from "null" to "endodermal-mesodermal cell signaling" * Set definition of GO:0003133 to "Any process that mediates the transfer of information from endodermal cells to mesodermal cells." * Added definition dbxref GOC:heartdev_mtg to GO:0003133 * Created link GO:0003133 -OBO_REL:is_a-> GO:0007267 * Assigned namespace "biological_process" to GO:0003133 * [Changed name of GO:0003134 from "null" to "endodermal-mesodermal cell signaling involved in heart induction", Set definition of GO:0003134 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to heart induction.", Added definition dbxref GOC:heartdev_mtg to GO:0003134, Created link GO:0003134 -part_of-> GO:0003129, Created link GO:0003134 -OBO_REL:is_a-> GO:0003133, Assigned namespace "biological_process" to GO:0003134] * Changed name of GO:0003134 from "null" to "endodermal-mesodermal cell signaling involved in heart induction" * Set definition of GO:0003134 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to heart induction." * Added definition dbxref GOC:heartdev_mtg to GO:0003134 * Created link GO:0003134 -part_of-> GO:0003129 * Created link GO:0003134 -OBO_REL:is_a-> GO:0003133 * Assigned namespace "biological_process" to GO:0003134 * [Changed name of GO:0003135 from "null" to "fibroblast growth factor receptor signaling pathway involved in heart induction", Set definition of GO:0003135 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to heart induction.", Added definition dbxref GOC:heartdev_mtg to GO:0003135, Created link GO:0003135 -OBO_REL:is_a-> GO:0008543, Created link GO:0003135 -part_of-> GO:0003129, Assigned namespace "biological_process" to GO:0003135] * Changed name of GO:0003135 from "null" to "fibroblast growth factor receptor signaling pathway involved in heart induction" * Set definition of GO:0003135 to "The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to heart induction." * Added definition dbxref GOC:heartdev_mtg to GO:0003135 * Created link GO:0003135 -OBO_REL:is_a-> GO:0008543 * Created link GO:0003135 -part_of-> GO:0003129 * Assigned namespace "biological_process" to GO:0003135 * [Changed name of GO:0003136 from "null" to "Wnt receptor signaling pathway involved in heart induction", Set definition of GO:0003136 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes involved in heart induction.", Added definition dbxref GOC:heartdev_mtg to GO:0003136, Created link GO:0003136 -OBO_REL:is_a-> GO:0060070, Created link GO:0003136 -OBO_REL:is_a-> GO:0003134, Assigned namespace "biological_process" to GO:0003136] * Changed name of GO:0003136 from "null" to "Wnt receptor signaling pathway involved in heart induction" * Set definition of GO:0003136 to "The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in transcription of target genes involved in heart induction." * Added definition dbxref GOC:heartdev_mtg to GO:0003136 * Created link GO:0003136 -OBO_REL:is_a-> GO:0060070 * Created link GO:0003136 -OBO_REL:is_a-> GO:0003134 * Assigned namespace "biological_process" to GO:0003136 * [Changed name of GO:0003137 from "null" to "Notch signaling pathway involved in heart induction", Set definition of GO:0003137 to "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction.", Added definition dbxref GOC:heartdev_mtg to GO:0003137, Created link GO:0003137 -part_of-> GO:0003129, Created link GO:0003137 -OBO_REL:is_a-> GO:0007219, Assigned namespace "biological_process" to GO:0003137] * Changed name of GO:0003137 from "null" to "Notch signaling pathway involved in heart induction" * Set definition of GO:0003137 to "The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction." * Added definition dbxref GOC:heartdev_mtg to GO:0003137 * Created link GO:0003137 -part_of-> GO:0003129 * Created link GO:0003137 -OBO_REL:is_a-> GO:0007219 * Assigned namespace "biological_process" to GO:0003137 * [Changed name of GO:0003138 from "null" to "primary heart field specification", Set definition of GO:0003138 to "The process by which a specific region of the lateral mesoderm is delineated into the area which will form the primary beating heart tube.", Added definition dbxref GOC:heartdev_mtg to GO:0003138, Created link GO:0003138 -OBO_REL:is_a-> GO:0003128, Assigned namespace "biological_process" to GO:0003138] * Changed name of GO:0003138 from "null" to "primary heart field specification" * Set definition of GO:0003138 to "The process by which a specific region of the lateral mesoderm is delineated into the area which will form the primary beating heart tube." * Added definition dbxref GOC:heartdev_mtg to GO:0003138 * Created link GO:0003138 -OBO_REL:is_a-> GO:0003128 * Assigned namespace "biological_process" to GO:0003138 * [Changed name of GO:0003139 from "null" to "secondary heart field specification", Set definition of GO:0003139 to "The process by which a specific region of the lateral mesoderm is delineated into the area which will form the majority of the mesodermal component of the right ventricle, arterial and venous poles.", Added definition dbxref GOC:heartdev_mtg to GO:0003139, Added synonym "anterior heart field specification" to GO:0003139, Added general dbxref GOC:heartdev_mtg to synonym anterior heart field specification of GO:0003139, Changed synonym scope of GO:0003139 from "Related" to "Narrow", Added synonym "second heart field specification" to GO:0003139, Added general dbxref GOC:heartdev_mtg to synonym second heart field specification of GO:0003139, Changed synonym scope of GO:0003139 from "Related" to "Exact", Created link GO:0003139 -OBO_REL:is_a-> GO:0003128, Assigned namespace "biological_process" to GO:0003139] * Changed name of GO:0003139 from "null" to "secondary heart field specification" * Set definition of GO:0003139 to "The process by which a specific region of the lateral mesoderm is delineated into the area which will form the majority of the mesodermal component of the right ventricle, arterial and venous poles." * Added definition dbxref GOC:heartdev_mtg to GO:0003139 * Added synonym "anterior heart field specification" to GO:0003139 * Added general dbxref GOC:heartdev_mtg to synonym anterior heart field specification of GO:0003139 * Changed synonym scope of GO:0003139 from "Related" to "Narrow" * Added synonym "second heart field specification" to GO:0003139 * Added general dbxref GOC:heartdev_mtg to synonym second heart field specification of GO:0003139 * Changed synonym scope of GO:0003139 from "Related" to "Exact" * Created link GO:0003139 -OBO_REL:is_a-> GO:0003128 * Assigned namespace "biological_process" to GO:0003139 * [Changed name of GO:0003140 from "null" to "determination of left/right asymmetry in lateral mesoderm", Created link GO:0003140 -OBO_REL:is_a-> GO:0007368, Created link GO:0003140 -part_of-> GO:0048368, Assigned namespace "biological_process" to GO:0003140] * Changed name of GO:0003140 from "null" to "determination of left/right asymmetry in lateral mesoderm" * Created link GO:0003140 -OBO_REL:is_a-> GO:0007368 * Created link GO:0003140 -part_of-> GO:0048368 * Assigned namespace "biological_process" to GO:0003140 * [Changed name of GO:0003141 from "null" to "transforming growth factor beta receptor signaling pathway involved in lateral mesoderm left/right asymmetry determination", Created link GO:0003141 -OBO_REL:is_a-> GO:0007179, Created link GO:0003141 -part_of-> GO:0003140, Assigned namespace "biological_process" to GO:0003141] * Changed name of GO:0003141 from "null" to "transforming growth factor beta receptor signaling pathway involved in lateral mesoderm left/right asymmetry determination" * Created link GO:0003141 -OBO_REL:is_a-> GO:0007179 * Created link GO:0003141 -part_of-> GO:0003140 * Assigned namespace "biological_process" to GO:0003141 * [Changed name of GO:0003142 from "null" to "cardiogenic plate morphogenesis", Set definition of GO:0003142 to "The process by which the anatomical structures of the cardiogenic plate are generated and organized. The cardiogenic plate is the first recognizable structure derived from the heart field.", Added definition dbxref GOC:heartdev_mtg to GO:0003142, Added synonym "cardiac crescent morphogenesis" to GO:0003142, Added general dbxref GOC:heartdev_mtg to synonym cardiac crescent morphogenesis of GO:0003142, Changed synonym scope of GO:0003142 from "Related" to "Exact", Created link GO:0003142 -OBO_REL:is_a-> GO:0009653, Created link GO:0003142 -part_of-> GO:0003007, Assigned namespace "biological_process" to GO:0003142] * Changed name of GO:0003142 from "null" to "cardiogenic plate morphogenesis" * Set definition of GO:0003142 to "The process by which the anatomical structures of the cardiogenic plate are generated and organized. The cardiogenic plate is the first recognizable structure derived from the heart field." * Added definition dbxref GOC:heartdev_mtg to GO:0003142 * Added synonym "cardiac crescent morphogenesis" to GO:0003142 * Added general dbxref GOC:heartdev_mtg to synonym cardiac crescent morphogenesis of GO:0003142 * Changed synonym scope of GO:0003142 from "Related" to "Exact" * Created link GO:0003142 -OBO_REL:is_a-> GO:0009653 * Created link GO:0003142 -part_of-> GO:0003007 * Assigned namespace "biological_process" to GO:0003142 * [Changed name of GO:0003143 from "null" to "embryonic heart tube morphogenesis", Created link GO:0003143 -OBO_REL:is_a-> GO:0060562, Created link GO:0003143 -part_of-> GO:0035050, Created link GO:0003143 -OBO_REL:is_a-> GO:0002009, Assigned namespace "biological_process" to GO:0003143] * Changed name of GO:0003143 from "null" to "embryonic heart tube morphogenesis" * Created link GO:0003143 -OBO_REL:is_a-> GO:0060562 * Created link GO:0003143 -part_of-> GO:0035050 * Created link GO:0003143 -OBO_REL:is_a-> GO:0002009 * Assigned namespace "biological_process" to GO:0003143 * [Changed name of GO:0003144 from "null" to "embryonic heart tube formation", Created link GO:0003144 -part_of-> GO:0003143, Created link GO:0003144 -OBO_REL:is_a-> GO:0001838, Assigned namespace "biological_process" to GO:0003144] * Changed name of GO:0003144 from "null" to "embryonic heart tube formation" * Created link GO:0003144 -part_of-> GO:0003143 * Created link GO:0003144 -OBO_REL:is_a-> GO:0001838 * Assigned namespace "biological_process" to GO:0003144 * [Changed name of GO:0003145 from "null" to "embryonic heart tube formation via epithelial folding", Created link GO:0003145 -OBO_REL:is_a-> GO:0003144, Assigned namespace "biological_process" to GO:0003145] * Changed name of GO:0003145 from "null" to "embryonic heart tube formation via epithelial folding" * Created link GO:0003145 -OBO_REL:is_a-> GO:0003144 * Assigned namespace "biological_process" to GO:0003145 * [Changed name of GO:0003146 from "null" to "heart jogging", Created link GO:0003146 -OBO_REL:is_a-> GO:0003007, Assigned namespace "biological_process" to GO:0003146] * Changed name of GO:0003146 from "null" to "heart jogging" * Created link GO:0003146 -OBO_REL:is_a-> GO:0003007 * Assigned namespace "biological_process" to GO:0003146 * [Changed name of GO:0003147 from "null" to "neural crest cell migration involved in heart formation", Set definition of GO:0003147 to "The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo that contributes to heart formation.", Added definition dbxref GOC:heartdev_mtg to GO:0003147, Created link GO:0003147 -OBO_REL:is_a-> GO:0001755, Created link GO:0003147 -part_of-> GO:0060914, Assigned namespace "biological_process" to GO:0003147] * Changed name of GO:0003147 from "null" to "neural crest cell migration involved in heart formation" * Set definition of GO:0003147 to "The characteristic movement of cells from the dorsal ridge of the neural tube to a variety of locations in a vertebrate embryo that contributes to heart formation." * Added definition dbxref GOC:heartdev_mtg to GO:0003147 * Created link GO:0003147 -OBO_REL:is_a-> GO:0001755 * Created link GO:0003147 -part_of-> GO:0060914 * Assigned namespace "biological_process" to GO:0003147 * [Changed name of GO:0003148 from "null" to "outflow tract septum morphogenesis", Created link GO:0003148 -part_of-> GO:0003151, Created link GO:0003148 -OBO_REL:is_a-> GO:0060411, Assigned namespace "biological_process" to GO:0003148] * Changed name of GO:0003148 from "null" to "outflow tract septum morphogenesis" * Created link GO:0003148 -part_of-> GO:0003151 * Created link GO:0003148 -OBO_REL:is_a-> GO:0060411 * Assigned namespace "biological_process" to GO:0003148 * [Changed name of GO:0003149 from "null" to "membranous septum morphogenesis", Created link GO:0003149 -OBO_REL:is_a-> GO:0009653, Created link GO:0003149 -part_of-> GO:0060412, Assigned namespace "biological_process" to GO:0003149] * Changed name of GO:0003149 from "null" to "membranous septum morphogenesis" * Created link GO:0003149 -OBO_REL:is_a-> GO:0009653 * Created link GO:0003149 -part_of-> GO:0060412 * Assigned namespace "biological_process" to GO:0003149 * [Changed name of GO:0003150 from "null" to "muscular septum morphogenesis", Created link GO:0003150 -part_of-> GO:0060412, Created link GO:0003150 -OBO_REL:is_a-> GO:0009653, Assigned namespace "biological_process" to GO:0003150] * Changed name of GO:0003150 from "null" to "muscular septum morphogenesis" * Created link GO:0003150 -part_of-> GO:0060412 * Created link GO:0003150 -OBO_REL:is_a-> GO:0009653 * Assigned namespace "biological_process" to GO:0003150 * [Changed name of GO:0003151 from "null" to "outflow tract morphogenesis", Created link GO:0003151 -OBO_REL:is_a-> GO:0009653, Created link GO:0003151 -part_of-> GO:0003007, Assigned namespace "biological_process" to GO:0003151] * Changed name of GO:0003151 from "null" to "outflow tract morphogenesis" * Created link GO:0003151 -OBO_REL:is_a-> GO:0009653 * Created link GO:0003151 -part_of-> GO:0003007 * Assigned namespace "biological_process" to GO:0003151 * [Changed name of GO:0070937 from "null" to "CRD-mediated mRNA stability complex", Added comment "See also the molecular function term 'alkyl hydroperoxide reductase activity ; GO:0008785'.", Set definition of GO:0070937 to "A protein complex that binds to, and promotes stabilization of, mRNA molecules containing the coding region instability determinant (CRD). In human, IGF2BP1 and at least four additional proteins: HNRNPU, SYNCRIP, YBX1, and DHX9.", Added definition dbxref GOC:mah to GO:0070937, Added definition dbxref PMID:19029303 to GO:0070937, Created link GO:0070937 -OBO_REL:is_a-> GO:0044444, Created link GO:0070937 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0070937] * Changed name of GO:0070937 from "null" to "CRD-mediated mRNA stability complex" * Added comment "See also the molecular function term 'alkyl hydroperoxide reductase activity ; GO:0008785'." * Set definition of GO:0070937 to "A protein complex that binds to, and promotes stabilization of, mRNA molecules containing the coding region instability determinant (CRD). In human, IGF2BP1 and at least four additional proteins: HNRNPU, SYNCRIP, YBX1, and DHX9." * Added definition dbxref GOC:mah to GO:0070937 * Added definition dbxref PMID:19029303 to GO:0070937 * Created link GO:0070937 -OBO_REL:is_a-> GO:0044444 * Created link GO:0070937 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0070937 * [Changed name of GO:0070938 from "null" to "contractile ring", Set definition of GO:0070938 to "A cytoskeletal structure composed of filamentous protein that forms beneath the membrane of many cells or organelles, in the plane of cell or organelle division. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells or organelles.", Added definition dbxref GOC:mah to GO:0070938, Added definition dbxref ISBN:0123645859 to GO:0070938, Added definition dbxref ISBN:0792354923 to GO:0070938, Added definition dbxref PMID:10791428 to GO:0070938, Added definition dbxref PMID:17913889 to GO:0070938, Added synonym "constriction ring" to GO:0070938, Added general dbxref GOC:mah to synonym constriction ring of GO:0070938, Added synonym "cytokinetic ring" to GO:0070938, Added general dbxref GOC:mah to synonym cytokinetic ring of GO:0070938, Created link GO:0070938 -OBO_REL:is_a-> GO:0044464, Assigned namespace "cellular_component" to GO:0070938] * Changed name of GO:0070938 from "null" to "contractile ring" * Set definition of GO:0070938 to "A cytoskeletal structure composed of filamentous protein that forms beneath the membrane of many cells or organelles, in the plane of cell or organelle division. Ring contraction is associated with centripetal growth of the membrane that divides the cytoplasm of the two daughter cells or organelles." * Added definition dbxref GOC:mah to GO:0070938 * Added definition dbxref ISBN:0123645859 to GO:0070938 * Added definition dbxref ISBN:0792354923 to GO:0070938 * Added definition dbxref PMID:10791428 to GO:0070938 * Added definition dbxref PMID:17913889 to GO:0070938 * Added synonym "constriction ring" to GO:0070938 * Added general dbxref GOC:mah to synonym constriction ring of GO:0070938 * Added synonym "cytokinetic ring" to GO:0070938 * Added general dbxref GOC:mah to synonym cytokinetic ring of GO:0070938 * Created link GO:0070938 -OBO_REL:is_a-> GO:0044464 * Assigned namespace "cellular_component" to GO:0070938 * [Changed name of GO:0070939 from "null" to "Dsl1p complex", Added comment "See also the molecular function term 'acetolactate synthase activity ; GO:0003984'.", Set definition of GO:0070939 to "A multisubunit tethering complex, i.e. a protein complex involved in mediating the initial interaction between vesicles and the membranes with which they fuse, that is involved in trafficking from the Golgi apparatus to the ER. In S. cerevisiae the Dsl1p complex contains Dsl1p, Tip20p, and Sec39p", Added definition dbxref GOC:jh to GO:0070939, Added definition dbxref GOC:mah to GO:0070939, Added definition dbxref PMID:19151722 to GO:0070939, Created link GO:0070939 -OBO_REL:is_a-> GO:0044444, Created link GO:0070939 -OBO_REL:is_a-> GO:0043234, Assigned namespace "cellular_component" to GO:0070939] * Changed name of GO:0070939 from "null" to "Dsl1p complex" * Added comment "See also the molecular function term 'acetolactate synthase activity ; GO:0003984'." * Set definition of GO:0070939 to "A multisubunit tethering complex, i.e. a protein complex involved in mediating the initial interaction between vesicles and the membranes with which they fuse, that is involved in trafficking from the Golgi apparatus to the ER. In S. cerevisiae the Dsl1p complex contains Dsl1p, Tip20p, and Sec39p" * Added definition dbxref GOC:jh to GO:0070939 * Added definition dbxref GOC:mah to GO:0070939 * Added definition dbxref PMID:19151722 to GO:0070939 * Created link GO:0070939 -OBO_REL:is_a-> GO:0044444 * Created link GO:0070939 -OBO_REL:is_a-> GO:0043234 * Assigned namespace "cellular_component" to GO:0070939 * Created link GO:0000282 -part_of-> GO:0033205 * Changed name of GO:0000916 from "contractile ring contraction involved in cytokinesis" to "contractile ring contraction involved in cytokinesis during cell cycle" * Changed definition of GO:0000916 from "The process of an actomyosin ring, which functions in cytokinesis, getting smaller in diameter." to "The process of an actomyosin ring getting smaller in diameter, in the context of cytokinesis that takes place as part of a cell cycle." * Added definition dbxref GOC:mah to GO:0000916 * Deleted synonym "cardiac jogging" from GO:0001947 * Changed synonym scope of GO:0001947 from "Related" to "Exact" * Changed name of GO:0005826 from "contractile ring" to "actomyosin contractile ring" * Created link GO:0005826 -OBO_REL:is_a-> GO:0070938 * added secondary id GO:0070261 to GO:0008015 * Changed definition of GO:0008015 from "The flow of blood through the body of an animal, enabling the transport of O2 and nutrients to the tissues and the removal of waste products." to "The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products." * Added definition dbxref GOC:heartdev_mtg to GO:0008015 * Added synonym "hemolymph circulation" to GO:0008015 * Deleted GO:0009758 --OBO_REL:is_a--> GO:0032501 * Created link GO:0009758 -OBO_REL:is_a-> GO:0008152 * Changed name of GO:0031566 from "contractile ring maintenance involved in cytokinesis" to "contractile ring maintenance involved in cytokinesis during cell cycle" * Changed definition of GO:0031566 from "The cell cycle process whereby the contractile ring is maintained in response to the cytokinesis checkpoint; that is when cytokinesis is delayed awaiting completion of nuclear division or the correct formation of cytokinetic structures." to "The cell cycle process whereby the contractile ring is maintained in response to the cytokinesis checkpoint; that is when cytokinesis is delayed awaiting completion of nuclear division or the correct formation of cytokinetic structures. This process occurs in the context of cytokinesis that takes place as part of a cell cycle." * Added definition dbxref GOC:mah to GO:0031566 * Deleted synonym "cytokinesis, contractile ring maintenance" from GO:0031566 * Added synonym "cytokinesis, contractile ring maintenance, involved in cytokinesis during cell cycle" to GO:0031566 * Added general dbxref GOC:tb to synonym cytokinesis, contractile ring maintenance, involved in cytokinesis during cell cycle of GO:0031566 * Added general dbxref GOC:dph to synonym cytokinesis, contractile ring maintenance, involved in cytokinesis during cell cycle of GO:0031566 * Changed synonym scope of GO:0031566 from "Related" to "Exact" * Changed name of GO:0031991 from "regulation of contractile ring contraction involved in cytokinesis" to "regulation of contractile ring contraction involved in cytokinesis during cell cycle" * Changed definition of GO:0031991 from "Any process that modulates the frequency, rate or extent of contraction of the actomyosin ring involved in cytokinesis." to "Any process that modulates the frequency, rate or extent of contraction of the actomyosin ring involved in cytokinesis that takes place as part of a cell cycle." * Created link GO:0032130 -part_of-> GO:0033205 * Changed name of GO:0032187 from "contractile ring localization" to "contractile ring localization involved in cytokinesis during cell cycle" * Changed definition of GO:0032187 from "The process by which a contractile ring is assembled and/or maintained in a specific location." to "The process by which a contractile ring is assembled and/or maintained in a specific location, in the context of cytokinesis that takes place as part of a cell cycle." * Created link GO:0032187 -part_of-> GO:0033205 * Changed name of GO:0032188 from "establishment of contractile ring localization" to "establishment of contractile ring localization involved in cytokinesis during cell cycle" * Changed name of GO:0032189 from "maintenance of contractile ring localization" to "maintenance of contractile ring localization involved in cytokinesis during cell cycle" * Added synonym "hemolymph circulation" to GO:0060047 * Added synonym "cardiogenesis" to GO:0060914 * Added general dbxref GOC:heartdev_mtg to synonym cardiogenesis of GO:0060914 * Destroyed object GO:0070261 From gocvs at genome.stanford.edu Wed Sep 23 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 23 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/23/2009 Message-ID: <200909240430.n8O4UC4V009596@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.798 by 1.801 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003152 * Created object of type obo:TERM with id GO:0003153 * [Changed name of GO:0003152 from "null" to "morphogenesis of an epithelial fold involved in embryonic heart tube formation", Set definition of GO:0003152 to "The morphogenetic process by which an epithelial sheet bends along a linear axis that contributes to embryonic heart tube formation.", Added definition dbxref GOC:heartdev_mtg to GO:0003152, Created link GO:0003152 -OBO_REL:is_a-> GO:0060571, Created link GO:0003152 -part_of-> GO:0003145, Assigned namespace "biological_process" to GO:0003152] * Changed name of GO:0003152 from "null" to "morphogenesis of an epithelial fold involved in embryonic heart tube formation" * Set definition of GO:0003152 to "The morphogenetic process by which an epithelial sheet bends along a linear axis that contributes to embryonic heart tube formation." * Added definition dbxref GOC:heartdev_mtg to GO:0003152 * Created link GO:0003152 -OBO_REL:is_a-> GO:0060571 * Created link GO:0003152 -part_of-> GO:0003145 * Assigned namespace "biological_process" to GO:0003152 * [Changed name of GO:0003153 from "null" to "closure of embryonic heart tube", Set definition of GO:0003153 to "Creation of the central hole of the embryonic heart tube by sealing the edges of an epithelial fold.", Added definition dbxref GOC:heartdev_mtg to GO:0003153, Created link GO:0003153 -OBO_REL:is_a-> GO:0060606, Created link GO:0003153 -part_of-> GO:0003145, Assigned namespace "biological_process" to GO:0003153] * Changed name of GO:0003153 from "null" to "closure of embryonic heart tube" * Set definition of GO:0003153 to "Creation of the central hole of the embryonic heart tube by sealing the edges of an epithelial fold." * Added definition dbxref GOC:heartdev_mtg to GO:0003153 * Created link GO:0003153 -OBO_REL:is_a-> GO:0060606 * Created link GO:0003153 -part_of-> GO:0003145 * Assigned namespace "biological_process" to GO:0003153 * Deleted GO:0001775 --OBO_REL:is_a--> GO:0009987 * Created link GO:0001775 -OBO_REL:is_a-> GO:0032501 * Set definition of GO:0003143 to "The process by which the anatomical structures of the embryonic heart tube are generated and organized. Morphogenesis pertains to the creation of form. The embryonic heart tube is an epithelial tube that will give rise to the mature heart." * Added definition dbxref GOC:heartdev_mtg to GO:0003143 * Set definition of GO:0003144 to "The process that gives rise to the embryonic heart tube. This process pertains to the initial formation of a structure from unspecified parts. The embryonic heart tube is an epithelial tube that will give rise to the mature heart." * Added definition dbxref GOC:heartdev_mtg to GO:0003144 * Set definition of GO:0003145 to "The process that gives rise to the embryonic heart tube by the cells of the heart field along a linear axis." * Added definition dbxref GOC:heartdev_mtg to GO:0003145 * Set definition of GO:0003146 to "The morphogenetic process by which the heart cone is displaced to the left with respect to the vector of the anterior-posterior axis." * Added definition dbxref GOC:heartdev_mtg to GO:0003146 * Added definition dbxref PMID:9334285 to GO:0003146 * Added synonym "cardiac jogging" to GO:0003146 * Added general dbxref GOC:heartdev_mtg to synonym cardiac jogging of GO:0003146 * Changed synonym scope of GO:0003146 from "Related" to "Exact" * Set definition of GO:0003148 to "The process by which the anatomical structures of the outflow tract septum are generated and organized. Morphogenesis pertains to the creation of form. The outflow tract septum is a partition in the outflow tract." * Added definition dbxref GOC:heartdev_mtg to GO:0003148 * Set definition of GO:0003151 to "The process by which the anatomical structures of the outflow tract are generated and organized. Morphogenesis pertains to the creation of form. The outflow tract is the portion of the heart through which blood flows into the arteries." * Added definition dbxref GOC:heartdev_mtg to GO:0003151 * Deleted GO:0016204 --OBO_REL:is_a--> GO:0007154 * Created link GO:0016204 -OBO_REL:is_a-> GO:0007267 From gocvs at genome.stanford.edu Thu Sep 24 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Thu, 24 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/24/2009 Message-ID: <200909250430.n8P4UC90001906@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.801 by 1.803 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003154 * Created object of type obo:TERM with id GO:0003155 * [Changed name of GO:0003154 from "null" to "BMP signaling pathway involved in determination of left/right symmetry", Set definition of GO:0003154 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to the determination of left/right symmetry.", Added definition dbxref GOC:heartdev_mtg to GO:0003154, Created link GO:0003154 -OBO_REL:is_a-> GO:0030509, Created link GO:0003154 -part_of-> GO:0007368, Assigned namespace "biological_process" to GO:0003154] * Changed name of GO:0003154 from "null" to "BMP signaling pathway involved in determination of left/right symmetry" * Set definition of GO:0003154 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to the determination of left/right symmetry." * Added definition dbxref GOC:heartdev_mtg to GO:0003154 * Created link GO:0003154 -OBO_REL:is_a-> GO:0030509 * Created link GO:0003154 -part_of-> GO:0007368 * Assigned namespace "biological_process" to GO:0003154 * [Changed name of GO:0003155 from "null" to "BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination", Set definition of GO:0003155 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to the determination of lateral mesoderm left/right asymmetry.", Added definition dbxref GOC:heartdev_mtg to GO:0003155, Created link GO:0003155 -part_of-> GO:0003140, Created link GO:0003155 -OBO_REL:is_a-> GO:0003154, Assigned namespace "biological_process" to GO:0003155] * Changed name of GO:0003155 from "null" to "BMP signaling pathway involved in lateral mesoderm left/right asymmetry determination" * Set definition of GO:0003155 to "A series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that contributes to the determination of lateral mesoderm left/right asymmetry." * Added definition dbxref GOC:heartdev_mtg to GO:0003155 * Created link GO:0003155 -part_of-> GO:0003140 * Created link GO:0003155 -OBO_REL:is_a-> GO:0003154 * Assigned namespace "biological_process" to GO:0003155 * Changed name of GO:0003136 from "Wnt receptor signaling pathway involved in heart induction" to "canonical Wnt receptor signaling pathway involved in heart induction" * Set definition of GO:0003140 to "The establishment of the lateral mesoderm with respect to the left and right halves." * Added definition dbxref GOC:heartdev_mtg to GO:0003140 * Set definition of GO:0003141 to "The series of molecular signals generated as a consequence of a transforming growth factor beta receptor binding to one of its physiological ligands that contributes to lateral mesoderm left/right asymmetry determination." * Added definition dbxref GOC:heartdev_mtg to GO:0003141 * Set definition of GO:0003149 to "The process by which the membranous septum is generated and organized. The membranous septum is the upper part of ventricular septum. Morphogenesis pertains to the creation of form." * Added definition dbxref GOC:mtg_heart to GO:0003149 * Set definition of GO:0003150 to "The process by which the muscular septum is generated and organized. The muscular septum is the lower part of the ventricular septum." * Added definition dbxref GOC:mtg_heart to GO:0003150 From gocvs at genome.stanford.edu Fri Sep 25 21:30:16 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Fri, 25 Sep 2009 21:30:16 -0700 Subject: [Go-diff] GO update 09/25/2009 Message-ID: <200909260430.n8Q4UGJb027698@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.803 by 1.804 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0044180 * Created object of type obo:TERM with id GO:0044181 * Created object of type obo:TERM with id GO:0044182 * Created object of type obo:TERM with id GO:0044183 * [Changed name of GO:0044180 from "null" to "filamentous growth of a unicellular organism", Set definition of GO:0044180 to "The process by which a unicellular organism grows in a threadlike, filamentous shape.", Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044180, Created link GO:0044180 -OBO_REL:is_a-> GO:0030447, Assigned namespace "biological_process" to GO:0044180] * Changed name of GO:0044180 from "null" to "filamentous growth of a unicellular organism" * Set definition of GO:0044180 to "The process by which a unicellular organism grows in a threadlike, filamentous shape." * Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044180 * Created link GO:0044180 -OBO_REL:is_a-> GO:0030447 * Assigned namespace "biological_process" to GO:0044180 * [Changed name of GO:0044181 from "null" to "filamentous growth of a multicellular organism", Set definition of GO:0044181 to "The process by which a multicellular organism grow in a threadlike, filamentous shape.", Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044181, Created link GO:0044181 -OBO_REL:is_a-> GO:0030447, Created link GO:0044181 -OBO_REL:is_a-> GO:0060560, Assigned namespace "biological_process" to GO:0044181] * Changed name of GO:0044181 from "null" to "filamentous growth of a multicellular organism" * Set definition of GO:0044181 to "The process by which a multicellular organism grow in a threadlike, filamentous shape." * Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044181 * Created link GO:0044181 -OBO_REL:is_a-> GO:0030447 * Created link GO:0044181 -OBO_REL:is_a-> GO:0060560 * Assigned namespace "biological_process" to GO:0044181 * [Changed name of GO:0044182 from "null" to "filamentous growth of a population of unicellular organisms", Set definition of GO:0044182 to "The process by which a group of unicellular organisms grow in a threadlike, filamentous shape.", Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044182, Created link GO:0044182 -OBO_REL:is_a-> GO:0030447, Assigned namespace "biological_process" to GO:0044182] * Changed name of GO:0044182 from "null" to "filamentous growth of a population of unicellular organisms" * Set definition of GO:0044182 to "The process by which a group of unicellular organisms grow in a threadlike, filamentous shape." * Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044182 * Created link GO:0044182 -OBO_REL:is_a-> GO:0030447 * Assigned namespace "biological_process" to GO:0044182 * [Changed name of GO:0044183 from "null" to "protein binding involved in protein folding", Set definition of GO:0044183 to "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding.", Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044183, Added synonym "chaperone activity" to GO:0044183, Changed synonym scope of GO:0044183 from "Related" to "Broad", Created link GO:0044183 -part_of-> GO:0006457, Created link GO:0044183 -OBO_REL:is_a-> GO:0005515, Assigned namespace "molecular_function" to GO:0044183] * Changed name of GO:0044183 from "null" to "protein binding involved in protein folding" * Set definition of GO:0044183 to "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding." * Added definition dbxref GOC:mtg_cambridge_2009 to GO:0044183 * Added synonym "chaperone activity" to GO:0044183 * Changed synonym scope of GO:0044183 from "Related" to "Broad" * Created link GO:0044183 -part_of-> GO:0006457 * Created link GO:0044183 -OBO_REL:is_a-> GO:0005515 * Assigned namespace "molecular_function" to GO:0044183 * Changed definition of GO:0009826 from "The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis." to "The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell." * Created link GO:0009826 -OBO_REL:is_a-> GO:0060560 * Changed definition of GO:0030447 from "The process by which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape." to "The process by which a multicellular organism, a unicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape." * Deleted GO:0070783 --OBO_REL:is_a--> GO:0030447 * Created link GO:0070783 -OBO_REL:is_a-> GO:0044182 From gocvs at genome.stanford.edu Mon Sep 28 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Mon, 28 Sep 2009 21:30:13 -0700 Subject: [Go-diff] GO update 09/28/2009 Message-ID: <200909290430.n8T4UD3S018221@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.804 by 1.806 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060918 * Created object of type obo:TERM with id GO:0060919 * [Changed name of GO:0060918 from "null" to "auxin transport", Set definition of GO:0060918 to "The directed movement of auxin into, out of, within or between cells.", Added definition dbxref GOC:dph to GO:0060918, Added definition dbxref GOC:tb to GO:0060918, Created link GO:0060918 -OBO_REL:is_a-> GO:0009914, Assigned namespace "biological_process" to GO:0060918] * Changed name of GO:0060918 from "null" to "auxin transport" * Set definition of GO:0060918 to "The directed movement of auxin into, out of, within or between cells." * Added definition dbxref GOC:dph to GO:0060918 * Added definition dbxref GOC:tb to GO:0060918 * Created link GO:0060918 -OBO_REL:is_a-> GO:0009914 * Assigned namespace "biological_process" to GO:0060918 * [Changed name of GO:0060919 from "null" to "auxin influx", Set definition of GO:0060919 to "The process involved in the transport of auxin into the cell.", Added definition dbxref GOC:dph to GO:0060919, Added definition dbxref GOC:tb to GO:0060919, Created link GO:0060919 -OBO_REL:is_a-> GO:0060918, Assigned namespace "biological_process" to GO:0060919] * Changed name of GO:0060919 from "null" to "auxin influx" * Set definition of GO:0060919 to "The process involved in the transport of auxin into the cell." * Added definition dbxref GOC:dph to GO:0060919 * Added definition dbxref GOC:tb to GO:0060919 * Created link GO:0060919 -OBO_REL:is_a-> GO:0060918 * Assigned namespace "biological_process" to GO:0060919 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003127 * Added definition dbxref GOC:mtg_heart to GO:0003127 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003128 * Added definition dbxref GOC:mtg_heart to GO:0003128 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003129 * Added definition dbxref GOC:mtg_heart to GO:0003129 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003130 * Added definition dbxref GOC:mtg_heart to GO:0003130 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003131 * Added definition dbxref GOC:mtg_heart to GO:0003131 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003132 * Added definition dbxref GOC:mtg_heart to GO:0003132 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003133 * Added definition dbxref GOC:mtg_heart to GO:0003133 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003134 * Added definition dbxref GOC:mtg_heart to GO:0003134 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003135 * Added definition dbxref GOC:mtg_heart to GO:0003135 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003136 * Added definition dbxref GOC:mtg_heart to GO:0003136 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003137 * Added definition dbxref GOC:mtg_heart to GO:0003137 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003138 * Added definition dbxref GOC:mtg_heart to GO:0003138 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003139 * Added definition dbxref GOC:mtg_heart to GO:0003139 * Deleted general dbxref GOC:heartdev_mtg from synonym anterior heart field specification of GO:0003139 * Added general dbxref GOC:mtg_heart to synonym anterior heart field specification of GO:0003139 * Deleted general dbxref GOC:heartdev_mtg from synonym second heart field specification of GO:0003139 * Added general dbxref GOC:mtg_heart to synonym second heart field specification of GO:0003139 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003140 * Added definition dbxref GOC:mtg_heart to GO:0003140 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003141 * Added definition dbxref GOC:mtg_heart to GO:0003141 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003142 * Added definition dbxref GOC:mtg_heart to GO:0003142 * Deleted general dbxref GOC:heartdev_mtg from synonym cardiac crescent morphogenesis of GO:0003142 * Added general dbxref GOC:mtg_heart to synonym cardiac crescent morphogenesis of GO:0003142 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003143 * Added definition dbxref GOC:mtg_heart to GO:0003143 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003144 * Added definition dbxref GOC:mtg_heart to GO:0003144 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003145 * Added definition dbxref GOC:mtg_heart to GO:0003145 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003146 * Added definition dbxref GOC:mtg_heart to GO:0003146 * Deleted general dbxref GOC:heartdev_mtg from synonym cardiac jogging of GO:0003146 * Added general dbxref GOC:mtg_heart to synonym cardiac jogging of GO:0003146 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003147 * Added definition dbxref GOC:mtg_heart to GO:0003147 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003148 * Added definition dbxref GOC:mtg_heart to GO:0003148 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003151 * Added definition dbxref GOC:mtg_heart to GO:0003151 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003152 * Added definition dbxref GOC:mtg_heart to GO:0003152 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003153 * Added definition dbxref GOC:mtg_heart to GO:0003153 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003154 * Added definition dbxref GOC:mtg_heart to GO:0003154 * Deleted definition dbxref GOC:heartdev_mtg from GO:0003155 * Added definition dbxref GOC:mtg_heart to GO:0003155 * Created link GO:0005254 -part_of-> GO:0006821 * Created link GO:0005338 -part_of-> GO:0015780 * Created link GO:0005353 -part_of-> GO:0015755 * Created link GO:0005354 -part_of-> GO:0015757 * Created link GO:0005355 -part_of-> GO:0015758 * Created link GO:0005363 -part_of-> GO:0015768 * Created link GO:0005365 -part_of-> GO:0015798 * Deleted definition dbxref GOC:heartdev_mtg from GO:0008015 * Added definition dbxref GOC:mtg_heart to GO:0008015 * Created link GO:0008509 -part_of-> GO:0006820 * Created link GO:0008515 -part_of-> GO:0015770 * Created link GO:0008524 -part_of-> GO:0006817 * Created link GO:0008524 -part_of-> GO:0005355 * Created link GO:0009670 -part_of-> GO:0015717 * Deleted GO:0009926 --OBO_REL:is_a--> GO:0009914 * Created link GO:0009926 -OBO_REL:is_a-> GO:0060918 * Deleted GO:0010315 --OBO_REL:is_a--> GO:0009914 * Created link GO:0010315 -OBO_REL:is_a-> GO:0060918 * Created link GO:0010328 -part_of-> GO:0060919 * Created link GO:0010329 -part_of-> GO:0010315 * Created link GO:0015075 -part_of-> GO:0006811 * Deleted GO:0015119 --OBO_REL:is_a--> GO:0015145 * Created link GO:0015119 -OBO_REL:is_a-> GO:0015149 * Created link GO:0015128 -OBO_REL:is_a-> GO:0042879 * Created link GO:0015128 -part_of-> GO:0015725 * Created link GO:0015133 -OBO_REL:is_a-> GO:0015145 * Created link GO:0015133 -part_of-> GO:0015735 * Created link GO:0015134 -part_of-> GO:0015736 * Deleted GO:0015136 --OBO_REL:is_a--> GO:0015144 * Created link GO:0015136 -OBO_REL:is_a-> GO:0015145 * Created link GO:0015136 -part_of-> GO:0015739 * Created link GO:0015144 -part_of-> GO:0034219 * Created link GO:0015145 -part_of-> GO:0015749 * Created link GO:0015146 -part_of-> GO:0015750 * Created link GO:0015148 -OBO_REL:is_a-> GO:0015753 * Created link GO:0015149 -part_of-> GO:0008645 * Created link GO:0015150 -part_of-> GO:0015756 * Created link GO:0015151 -part_of-> GO:0000017 * Created link GO:0015152 -part_of-> GO:0015760 * Created link GO:0015153 -part_of-> GO:0015762 * Created link GO:0015154 -part_of-> GO:0015766 * Created link GO:0015155 -part_of-> GO:0015767 * Created link GO:0015156 -part_of-> GO:0015769 * Created link GO:0015157 -part_of-> GO:0015772 * Created link GO:0015158 -part_of-> GO:0015773 * Created link GO:0015159 -part_of-> GO:0015774 * Created link GO:0015160 -part_of-> GO:0015775 * Changed name of GO:0015161 from "capsular-polysaccharide transmembrane transporter activity" to "capsular polysaccharide transmembrane transporter activity" * Created link GO:0015161 -part_of-> GO:0015776 * Created link GO:0015162 -part_of-> GO:0015777 * Created link GO:0015163 -part_of-> GO:0015778 * Created link GO:0015164 -part_of-> GO:0015779 * Created link GO:0015165 -part_of-> GO:0015781 * Created link GO:0015166 -part_of-> GO:0015791 * Created link GO:0015167 -part_of-> GO:0015792 * Created link GO:0015168 -part_of-> GO:0015793 * Created link GO:0015169 -part_of-> GO:0015794 * Created link GO:0015170 -part_of-> GO:0015799 * Created link GO:0015349 -part_of-> GO:0070327 * Created link GO:0015367 -part_of-> GO:0015743 * Created link GO:0015367 -part_of-> GO:0015742 * Created link GO:0015383 -part_of-> GO:0015701 * Created link GO:0015383 -part_of-> GO:0008272 * Created link GO:0015515 -part_of-> GO:0015746 * Created link GO:0015515 -part_of-> GO:0015744 * Created link GO:0015516 -part_of-> GO:0015744 * Created link GO:0015516 -part_of-> GO:0015745 * Created link GO:0015554 -OBO_REL:is_a-> GO:0042876 * Created link GO:0015554 -part_of-> GO:0015745 * Created link GO:0015566 -part_of-> GO:0015894 * Created link GO:0015568 -OBO_REL:is_a-> GO:0042879 * Created link GO:0015568 -part_of-> GO:0015726 * Created link GO:0015571 -part_of-> GO:0015763 * Created link GO:0015572 -part_of-> GO:0015764 * Created link GO:0015573 -part_of-> GO:0015759 * Created link GO:0015574 -part_of-> GO:0015771 * Created link GO:0015575 -part_of-> GO:0015797 * Created link GO:0015576 -part_of-> GO:0015795 * Created link GO:0015577 -part_of-> GO:0015796 * Created link GO:0015578 -part_of-> GO:0015761 * Created link GO:0015591 -part_of-> GO:0015752 * Created link GO:0015592 -part_of-> GO:0015765 * Created link GO:0015593 -part_of-> GO:0015754 * Created link GO:0015619 -part_of-> GO:0030974 * Created link GO:0015760 -OBO_REL:is_a-> GO:0015712 * Added synonym "arabitol transport" to GO:0015792 * Added general dbxref GOC:tb to synonym arabitol transport of GO:0015792 * Added general dbxref GOC:dph to synonym arabitol transport of GO:0015792 * Deleted GO:0015920 --OBO_REL:is_a--> GO:0006810 * Created link GO:0015920 -OBO_REL:is_a-> GO:0015774 * Created link GO:0019191 -part_of-> GO:0019533 * Created link GO:0030974 -OBO_REL:is_a-> GO:0015888 * Created link GO:0033155 -part_of-> GO:0033156 * Created link GO:0042876 -part_of-> GO:0042869 * Created link GO:0042877 -part_of-> GO:0042871 * Created link GO:0042878 -part_of-> GO:0042870 * Created link GO:0042879 -part_of-> GO:0042873 * Created link GO:0042880 -part_of-> GO:0042874 * Created link GO:0042881 -part_of-> GO:0042875 * Created link GO:0042900 -part_of-> GO:0015751 * Created link GO:0042947 -part_of-> GO:0042946 * Created link GO:0042950 -part_of-> GO:0042948 * Created link GO:0042951 -part_of-> GO:0042949 * Created link GO:0042957 -part_of-> GO:0042955 * Created link GO:0042958 -part_of-> GO:0042956 * Deleted GO:0043225 --part_of--> GO:0006820 * Created link GO:0051474 -part_of-> GO:0051475 * Created link GO:0051477 -part_of-> GO:0051476 * Deleted general dbxref GOC:heartdev_mtg from synonym cardiogenesis of GO:0060914 * Added general dbxref GOC:mtg_heart to synonym cardiogenesis of GO:0060914 From gocvs at genome.stanford.edu Tue Sep 29 21:30:12 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Tue, 29 Sep 2009 21:30:12 -0700 Subject: [Go-diff] GO update 09/29/2009 Message-ID: <200909300430.n8U4UCqr009133@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.806 by 1.808 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0060920 * Created object of type obo:TERM with id GO:0060921 * Created object of type obo:TERM with id GO:0060922 * Created object of type obo:TERM with id GO:0060923 * Created object of type obo:TERM with id GO:0060924 * Created object of type obo:TERM with id GO:0060925 * Created object of type obo:TERM with id GO:0060926 * Created object of type obo:TERM with id GO:0060927 * Created object of type obo:TERM with id GO:0060928 * Created object of type obo:TERM with id GO:0060929 * Created object of type obo:TERM with id GO:0060930 * Created object of type obo:TERM with id GO:0060931 * Created object of type obo:TERM with id GO:0060932 * Created object of type obo:TERM with id GO:0060933 * Created object of type obo:TERM with id GO:0060934 * Created object of type obo:TERM with id GO:0060935 * Created object of type obo:TERM with id GO:0060936 * Created object of type obo:TERM with id GO:0060937 * Created object of type obo:TERM with id GO:0060938 * Created object of type obo:TERM with id GO:0060939 * Created object of type obo:TERM with id GO:0060940 * Created object of type obo:TERM with id GO:0060941 * Created object of type obo:TERM with id GO:0060942 * Created object of type obo:TERM with id GO:0060943 * Created object of type obo:TERM with id GO:0060944 * Created object of type obo:TERM with id GO:0060945 * Created object of type obo:TERM with id GO:0060946 * Created object of type obo:TERM with id GO:0060947 * Created object of type obo:TERM with id GO:0060948 * Created object of type obo:TERM with id GO:0060949 * Created object of type obo:TERM with id GO:0060950 * Created object of type obo:TERM with id GO:0060951 * Created object of type obo:TERM with id GO:0060952 * Created object of type obo:TERM with id GO:0060953 * Created object of type obo:TERM with id GO:0060954 * Created object of type obo:TERM with id GO:0060955 * Created object of type obo:TERM with id GO:0060956 * Created object of type obo:TERM with id GO:0060957 * Created object of type obo:TERM with id GO:0060958 * Created object of type obo:TERM with id GO:0070940 * [Changed name of GO:0060920 from "null" to "pacemaker cell differentiation", Set definition of GO:0060920 to "The process whereby a relatively unspecialized cell acquires specialized features of a pacemaker cell. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions.", Added definition dbxref GOC:mtg_heart to GO:0060920, Created link GO:0060920 -OBO_REL:is_a-> GO:0055007, Assigned namespace "biological_process" to GO:0060920] * Changed name of GO:0060920 from "null" to "pacemaker cell differentiation" * Set definition of GO:0060920 to "The process whereby a relatively unspecialized cell acquires specialized features of a pacemaker cell. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions." * Added definition dbxref GOC:mtg_heart to GO:0060920 * Created link GO:0060920 -OBO_REL:is_a-> GO:0055007 * Assigned namespace "biological_process" to GO:0060920 * [Changed name of GO:0060921 from "null" to "SA node cell differentiation", Set definition of GO:0060921 to "The process whereby a relatively unspecialized cell acquires specialized features of an SA node cell. SA node cells are pacemaker cells that are found in the sino-atrial node.", Added definition dbxref GOC:mtg_heart to GO:0060921, Added synonym "sino-atrial node cell" to GO:0060921, Added general dbxref GOC:mtg_heart to synonym sino-atrial node cell of GO:0060921, Changed synonym scope of GO:0060921 from "Related" to "Exact", Created link GO:0060921 -OBO_REL:is_a-> GO:0060920, Assigned namespace "biological_process" to GO:0060921] * Changed name of GO:0060921 from "null" to "SA node cell differentiation" * Set definition of GO:0060921 to "The process whereby a relatively unspecialized cell acquires specialized features of an SA node cell. SA node cells are pacemaker cells that are found in the sino-atrial node." * Added definition dbxref GOC:mtg_heart to GO:0060921 * Added synonym "sino-atrial node cell" to GO:0060921 * Added general dbxref GOC:mtg_heart to synonym sino-atrial node cell of GO:0060921 * Changed synonym scope of GO:0060921 from "Related" to "Exact" * Created link GO:0060921 -OBO_REL:is_a-> GO:0060920 * Assigned namespace "biological_process" to GO:0060921 * [Changed name of GO:0060922 from "null" to "AV node cell differentiation", Set definition of GO:0060922 to "The process whereby a relatively unspecialized cell acquires specialized features of an AV node cell. AV node cells are pacemaker cells that are found in the atrial-ventricular node.", Added definition dbxref GOC:mtg_heart to GO:0060922, Added synonym "atrial-ventricular node cell differentiation" to GO:0060922, Added general dbxref GOC:mtg_heart to synonym atrial-ventricular node cell differentiation of GO:0060922, Created link GO:0060922 -OBO_REL:is_a-> GO:0060920, Assigned namespace "biological_process" to GO:0060922] * Changed name of GO:0060922 from "null" to "AV node cell differentiation" * Set definition of GO:0060922 to "The process whereby a relatively unspecialized cell acquires specialized features of an AV node cell. AV node cells are pacemaker cells that are found in the atrial-ventricular node." * Added definition dbxref GOC:mtg_heart to GO:0060922 * Added synonym "atrial-ventricular node cell differentiation" to GO:0060922 * Added general dbxref GOC:mtg_heart to synonym atrial-ventricular node cell differentiation of GO:0060922 * Created link GO:0060922 -OBO_REL:is_a-> GO:0060920 * Assigned namespace "biological_process" to GO:0060922 * [Changed name of GO:0060923 from "null" to "cardiac muscle cell fate commitment", Set definition of GO:0060923 to "The commitment of cells to specific cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.", Added definition dbxref GOC:mtg_heart to GO:0060923, Added synonym "cardiomyocyte cell fate commitment" to GO:0060923, Added general dbxref GOC:mtg_heart to synonym cardiomyocyte cell fate commitment of GO:0060923, Changed synonym scope of GO:0060923 from "Related" to "Exact", Created link GO:0060923 -OBO_REL:is_a-> GO:0060911, Created link GO:0060923 -part_of-> GO:0055007, Assigned namespace "biological_process" to GO:0060923] * Changed name of GO:0060923 from "null" to "cardiac muscle cell fate commitment" * Set definition of GO:0060923 to "The commitment of cells to specific cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction." * Added definition dbxref GOC:mtg_heart to GO:0060923 * Added synonym "cardiomyocyte cell fate commitment" to GO:0060923 * Added general dbxref GOC:mtg_heart to synonym cardiomyocyte cell fate commitment of GO:0060923 * Changed synonym scope of GO:0060923 from "Related" to "Exact" * Created link GO:0060923 -OBO_REL:is_a-> GO:0060911 * Created link GO:0060923 -part_of-> GO:0055007 * Assigned namespace "biological_process" to GO:0060923 * [Changed name of GO:0060924 from "null" to "atrial cardiac muscle cell fate commitment", Set definition of GO:0060924 to "The commitment of cells to atrial cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.", Added definition dbxref GOC:mtg_heart to GO:0060924, Added synonym "atrial cardiomyocyte cell fate commitment" to GO:0060924, Added general dbxref GOC:mtg_heart to synonym atrial cardiomyocyte cell fate commitment of GO:0060924, Created link GO:0060924 -part_of-> GO:0055011, Created link GO:0060924 -OBO_REL:is_a-> GO:0060923, Assigned namespace "biological_process" to GO:0060924] * Changed name of GO:0060924 from "null" to "atrial cardiac muscle cell fate commitment" * Set definition of GO:0060924 to "The commitment of cells to atrial cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction." * Added definition dbxref GOC:mtg_heart to GO:0060924 * Added synonym "atrial cardiomyocyte cell fate commitment" to GO:0060924 * Added general dbxref GOC:mtg_heart to synonym atrial cardiomyocyte cell fate commitment of GO:0060924 * Created link GO:0060924 -part_of-> GO:0055011 * Created link GO:0060924 -OBO_REL:is_a-> GO:0060923 * Assigned namespace "biological_process" to GO:0060924 * [Changed name of GO:0060925 from "null" to "ventricular cardiac muscle cell fate commitment", Set definition of GO:0060925 to "The commitment of cells to ventricular cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the ventricle. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.", Added definition dbxref GOC:mtg_heart to GO:0060925, Created link GO:0060925 -part_of-> GO:0055012, Created link GO:0060925 -OBO_REL:is_a-> GO:0060923, Assigned namespace "biological_process" to GO:0060925] * Changed name of GO:0060925 from "null" to "ventricular cardiac muscle cell fate commitment" * Set definition of GO:0060925 to "The commitment of cells to ventricular cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the ventricle. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction." * Added definition dbxref GOC:mtg_heart to GO:0060925 * Created link GO:0060925 -part_of-> GO:0055012 * Created link GO:0060925 -OBO_REL:is_a-> GO:0060923 * Assigned namespace "biological_process" to GO:0060925 * [Changed name of GO:0060926 from "null" to "pacemaker cell development", Set definition of GO:0060926 to "The process whose specific outcome is the progression of a pacemaker cell over time, from its formation to the mature state. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions.", Added definition dbxref GOC:mtg_heart to GO:0060926, Created link GO:0060926 -part_of-> GO:0060920, Created link GO:0060926 -OBO_REL:is_a-> GO:0055013, Assigned namespace "biological_process" to GO:0060926] * Changed name of GO:0060926 from "null" to "pacemaker cell development" * Set definition of GO:0060926 to "The process whose specific outcome is the progression of a pacemaker cell over time, from its formation to the mature state. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions." * Added definition dbxref GOC:mtg_heart to GO:0060926 * Created link GO:0060926 -part_of-> GO:0060920 * Created link GO:0060926 -OBO_REL:is_a-> GO:0055013 * Assigned namespace "biological_process" to GO:0060926 * [Changed name of GO:0060927 from "null" to "pacemaker cell fate commitment", Set definition of GO:0060927 to "The commitment of cells to pacemaker cell fates and their capacity to differentiate into pacemaker cells. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions.", Added definition dbxref GOC:mtg_heart to GO:0060927, Created link GO:0060927 -OBO_REL:is_a-> GO:0060923, Created link GO:0060927 -part_of-> GO:0060920, Assigned namespace "biological_process" to GO:0060927] * Changed name of GO:0060927 from "null" to "pacemaker cell fate commitment" * Set definition of GO:0060927 to "The commitment of cells to pacemaker cell fates and their capacity to differentiate into pacemaker cells. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions." * Added definition dbxref GOC:mtg_heart to GO:0060927 * Created link GO:0060927 -OBO_REL:is_a-> GO:0060923 * Created link GO:0060927 -part_of-> GO:0060920 * Assigned namespace "biological_process" to GO:0060927 * [Changed name of GO:0060928 from "null" to "AV node cell development", Set definition of GO:0060928 to "The process whose specific outcome is the progression of an AV node cell over time, from its formation to the mature state.", Added definition dbxref GOC:mtg_heart to GO:0060928, Created link GO:0060928 -OBO_REL:is_a-> GO:0060926, Created link GO:0060928 -part_of-> GO:0060922, Assigned namespace "biological_process" to GO:0060928] * Changed name of GO:0060928 from "null" to "AV node cell development" * Set definition of GO:0060928 to "The process whose specific outcome is the progression of an AV node cell over time, from its formation to the mature state." * Added definition dbxref GOC:mtg_heart to GO:0060928 * Created link GO:0060928 -OBO_REL:is_a-> GO:0060926 * Created link GO:0060928 -part_of-> GO:0060922 * Assigned namespace "biological_process" to GO:0060928 * [Changed name of GO:0060929 from "null" to "AV node cell fate commitment", Set definition of GO:0060929 to "The commitment of cells to AV node cell fates and their capacity to differentiate into AV node cells.", Added definition dbxref GOC:mtg_heart to GO:0060929, Created link GO:0060929 -OBO_REL:is_a-> GO:0060927, Created link GO:0060929 -part_of-> GO:0060922, Assigned namespace "biological_process" to GO:0060929] * Changed name of GO:0060929 from "null" to "AV node cell fate commitment" * Set definition of GO:0060929 to "The commitment of cells to AV node cell fates and their capacity to differentiate into AV node cells." * Added definition dbxref GOC:mtg_heart to GO:0060929 * Created link GO:0060929 -OBO_REL:is_a-> GO:0060927 * Created link GO:0060929 -part_of-> GO:0060922 * Assigned namespace "biological_process" to GO:0060929 * [Changed name of GO:0060930 from "null" to "SA node cell fate commitment", Set definition of GO:0060930 to "The commitment of cells to SA node cell fates and their capacity to differentiate into SA node cells. SA node cells are pacemaker cells that are found in the sino-atrial node.", Added definition dbxref GOC:mtg_heart to GO:0060930, Created link GO:0060930 -part_of-> GO:0060921, Created link GO:0060930 -OBO_REL:is_a-> GO:0060927, Assigned namespace "biological_process" to GO:0060930] * Changed name of GO:0060930 from "null" to "SA node cell fate commitment" * Set definition of GO:0060930 to "The commitment of cells to SA node cell fates and their capacity to differentiate into SA node cells. SA node cells are pacemaker cells that are found in the sino-atrial node." * Added definition dbxref GOC:mtg_heart to GO:0060930 * Created link GO:0060930 -part_of-> GO:0060921 * Created link GO:0060930 -OBO_REL:is_a-> GO:0060927 * Assigned namespace "biological_process" to GO:0060930 * [Changed name of GO:0060931 from "null" to "SA node cell development", Set definition of GO:0060931 to "The process whose specific outcome is the progression of an SA node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sino-atrial node.", Added definition dbxref GOC:mtg_heart to GO:0060931, Created link GO:0060931 -OBO_REL:is_a-> GO:0060926, Created link GO:0060931 -part_of-> GO:0060921, Assigned namespace "biological_process" to GO:0060931] * Changed name of GO:0060931 from "null" to "SA node cell development" * Set definition of GO:0060931 to "The process whose specific outcome is the progression of an SA node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sino-atrial node." * Added definition dbxref GOC:mtg_heart to GO:0060931 * Created link GO:0060931 -OBO_REL:is_a-> GO:0060926 * Created link GO:0060931 -part_of-> GO:0060921 * Assigned namespace "biological_process" to GO:0060931 * [Changed name of GO:0060932 from "null" to "His-Purkinje cell differentiation", Set definition of GO:0060932 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers that regulate cardiac muscle contraction in the ventricles.", Added definition dbxref GOC:mtg_heart to GO:0060932, Created link GO:0060932 -OBO_REL:is_a-> GO:0035051, Assigned namespace "biological_process" to GO:0060932] * Changed name of GO:0060932 from "null" to "His-Purkinje cell differentiation" * Set definition of GO:0060932 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers that regulate cardiac muscle contraction in the ventricles." * Added definition dbxref GOC:mtg_heart to GO:0060932 * Created link GO:0060932 -OBO_REL:is_a-> GO:0035051 * Assigned namespace "biological_process" to GO:0060932 * [Changed name of GO:0060933 from "null" to "His-Purkinje cell development", Set definition of GO:0060933 to "The process whose specific outcome is the progression of a His-Purkinje cell over time, from its formation to the mature state. These cells form the fibers that regulate cardiac muscle contraction in the ventricles.", Added definition dbxref GOC:mtg_heart to GO:0060933, Created link GO:0060933 -part_of-> GO:0060932, Created link GO:0060933 -OBO_REL:is_a-> GO:0055006, Assigned namespace "biological_process" to GO:0060933] * Changed name of GO:0060933 from "null" to "His-Purkinje cell development" * Set definition of GO:0060933 to "The process whose specific outcome is the progression of a His-Purkinje cell over time, from its formation to the mature state. These cells form the fibers that regulate cardiac muscle contraction in the ventricles." * Added definition dbxref GOC:mtg_heart to GO:0060933 * Created link GO:0060933 -part_of-> GO:0060932 * Created link GO:0060933 -OBO_REL:is_a-> GO:0055006 * Assigned namespace "biological_process" to GO:0060933 * [Changed name of GO:0060934 from "null" to "His-Purkinje cell fate commitment", Set definition of GO:0060934 to "The commitment of cells to His-Purkije cell fates and their capacity to differentiate into His-Purkinje cells. These cells form the fibers that regulate cardiac muscle contraction in the ventricles.", Added definition dbxref GOC:mtg_heart to GO:0060934, Created link GO:0060934 -part_of-> GO:0060932, Created link GO:0060934 -OBO_REL:is_a-> GO:0060911, Assigned namespace "biological_process" to GO:0060934] * Changed name of GO:0060934 from "null" to "His-Purkinje cell fate commitment" * Set definition of GO:0060934 to "The commitment of cells to His-Purkije cell fates and their capacity to differentiate into His-Purkinje cells. These cells form the fibers that regulate cardiac muscle contraction in the ventricles." * Added definition dbxref GOC:mtg_heart to GO:0060934 * Created link GO:0060934 -part_of-> GO:0060932 * Created link GO:0060934 -OBO_REL:is_a-> GO:0060911 * Assigned namespace "biological_process" to GO:0060934 * [Changed name of GO:0060935 from "null" to "cardiac fibroblast cell differentiation", Set definition of GO:0060935 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060935, Created link GO:0060935 -OBO_REL:is_a-> GO:0035051, Assigned namespace "biological_process" to GO:0060935] * Changed name of GO:0060935 from "null" to "cardiac fibroblast cell differentiation" * Set definition of GO:0060935 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060935 * Created link GO:0060935 -OBO_REL:is_a-> GO:0035051 * Assigned namespace "biological_process" to GO:0060935 * [Changed name of GO:0060936 from "null" to "cardiac fibroblast cell development", Set definition of GO:0060936 to "The process whose specific outcome is the progression of a cardiac fibroblast over time, from its formation to the mature state. A cardiac fibroblast is a connective tissue cell of the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060936, Created link GO:0060936 -OBO_REL:is_a-> GO:0055006, Created link GO:0060936 -part_of-> GO:0060935, Assigned namespace "biological_process" to GO:0060936] * Changed name of GO:0060936 from "null" to "cardiac fibroblast cell development" * Set definition of GO:0060936 to "The process whose specific outcome is the progression of a cardiac fibroblast over time, from its formation to the mature state. A cardiac fibroblast is a connective tissue cell of the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060936 * Created link GO:0060936 -OBO_REL:is_a-> GO:0055006 * Created link GO:0060936 -part_of-> GO:0060935 * Assigned namespace "biological_process" to GO:0060936 * [Changed name of GO:0060937 from "null" to "cardiac fibroblast cell fate commitment", Set definition of GO:0060937 to "The commitment of cells to a cardiac fibroblast fate and their capacity to differentiate into cardiac fibroblast cells. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060937, Created link GO:0060937 -part_of-> GO:0060935, Created link GO:0060937 -OBO_REL:is_a-> GO:0060911, Assigned namespace "biological_process" to GO:0060937] * Changed name of GO:0060937 from "null" to "cardiac fibroblast cell fate commitment" * Set definition of GO:0060937 to "The commitment of cells to a cardiac fibroblast fate and their capacity to differentiate into cardiac fibroblast cells. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060937 * Created link GO:0060937 -part_of-> GO:0060935 * Created link GO:0060937 -OBO_REL:is_a-> GO:0060911 * Assigned namespace "biological_process" to GO:0060937 * [Changed name of GO:0060938 from "null" to "epicardial-derived cardiac fibroblast cell differentiation", Set definition of GO:0060938 to "The process whereby an epicardial cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060938, Created link GO:0060938 -OBO_REL:is_a-> GO:0060935, Assigned namespace "biological_process" to GO:0060938] * Changed name of GO:0060938 from "null" to "epicardial-derived cardiac fibroblast cell differentiation" * Set definition of GO:0060938 to "The process whereby an epicardial cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060938 * Created link GO:0060938 -OBO_REL:is_a-> GO:0060935 * Assigned namespace "biological_process" to GO:0060938 * [Changed name of GO:0060939 from "null" to "epicardial-derived cardiac fibroblast cell development", Set definition of GO:0060939 to "The process whose specific outcome is the progression of an epicardial-derived cardiac fibroblast over time, from its formation to the mature state. A epicardial-derived cardiac fibroblast is a connective tissue cell of the heart that arises from the epicardium and secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060939, Created link GO:0060939 -OBO_REL:is_a-> GO:0060936, Created link GO:0060939 -part_of-> GO:0060938, Assigned namespace "biological_process" to GO:0060939] * Changed name of GO:0060939 from "null" to "epicardial-derived cardiac fibroblast cell development" * Set definition of GO:0060939 to "The process whose specific outcome is the progression of an epicardial-derived cardiac fibroblast over time, from its formation to the mature state. A epicardial-derived cardiac fibroblast is a connective tissue cell of the heart that arises from the epicardium and secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060939 * Created link GO:0060939 -OBO_REL:is_a-> GO:0060936 * Created link GO:0060939 -part_of-> GO:0060938 * Assigned namespace "biological_process" to GO:0060939 * [Changed name of GO:0060940 from "null" to "epithelial to mesenchymal transition involved in cardiac fibroblast development", Set definition of GO:0060940 to "A transition where an epicardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will mature into a cardiac fibroblast.", Added definition dbxref GOC:mtg_heart to GO:0060940, Created link GO:0060940 -part_of-> GO:0060939, Created link GO:0060940 -OBO_REL:is_a-> GO:0060317, Assigned namespace "biological_process" to GO:0060940] * Changed name of GO:0060940 from "null" to "epithelial to mesenchymal transition involved in cardiac fibroblast development" * Set definition of GO:0060940 to "A transition where an epicardial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell that will mature into a cardiac fibroblast." * Added definition dbxref GOC:mtg_heart to GO:0060940 * Created link GO:0060940 -part_of-> GO:0060939 * Created link GO:0060940 -OBO_REL:is_a-> GO:0060317 * Assigned namespace "biological_process" to GO:0060940 * [Changed name of GO:0060941 from "null" to "epicardial-derived cardiac fibroblast cell fate commitment", Set definition of GO:0060941 to "The commitment of an epicardial cell to a cardiac fibroblast cell fate and its capacity to differentiate into a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060941, Created link GO:0060941 -part_of-> GO:0060938, Created link GO:0060941 -OBO_REL:is_a-> GO:0060911, Created link GO:0060941 -OBO_REL:is_a-> GO:0060937, Assigned namespace "biological_process" to GO:0060941] * Changed name of GO:0060941 from "null" to "epicardial-derived cardiac fibroblast cell fate commitment" * Set definition of GO:0060941 to "The commitment of an epicardial cell to a cardiac fibroblast cell fate and its capacity to differentiate into a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060941 * Created link GO:0060941 -part_of-> GO:0060938 * Created link GO:0060941 -OBO_REL:is_a-> GO:0060911 * Created link GO:0060941 -OBO_REL:is_a-> GO:0060937 * Assigned namespace "biological_process" to GO:0060941 * [Changed name of GO:0060942 from "null" to "neural crest-derived cardiac fibroblast cell differentiation", Set definition of GO:0060942 to "The process whereby a neural crest cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060942, Created link GO:0060942 -OBO_REL:is_a-> GO:0060935, Assigned namespace "biological_process" to GO:0060942] * Changed name of GO:0060942 from "null" to "neural crest-derived cardiac fibroblast cell differentiation" * Set definition of GO:0060942 to "The process whereby a neural crest cell acquires the specialized structural and/or functional features of a cardiac fibroblast. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060942 * Created link GO:0060942 -OBO_REL:is_a-> GO:0060935 * Assigned namespace "biological_process" to GO:0060942 * [Changed name of GO:0060943 from "null" to "neural crest-derived cardiac fibroblast cell development", Set definition of GO:0060943 to "The process whose specific outcome is the progression of a cardiac fibroblast over time, from its formation from a neural crest cell to the mature state. A cardiac fibroblast is a connective tissue cell of the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060943, Created link GO:0060943 -OBO_REL:is_a-> GO:0060936, Created link GO:0060943 -part_of-> GO:0060942, Assigned namespace "biological_process" to GO:0060943] * Changed name of GO:0060943 from "null" to "neural crest-derived cardiac fibroblast cell development" * Set definition of GO:0060943 to "The process whose specific outcome is the progression of a cardiac fibroblast over time, from its formation from a neural crest cell to the mature state. A cardiac fibroblast is a connective tissue cell of the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060943 * Created link GO:0060943 -OBO_REL:is_a-> GO:0060936 * Created link GO:0060943 -part_of-> GO:0060942 * Assigned namespace "biological_process" to GO:0060943 * [Changed name of GO:0060944 from "null" to "neural crest-derived cardiac fibroblast cell fate commitment", Set definition of GO:0060944 to "The commitment of neural crest cells to a cardiac fibroblast fate and their capacity to differentiate into cardiac fibroblast cells. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules.", Added definition dbxref GOC:mtg_heart to GO:0060944, Created link GO:0060944 -OBO_REL:is_a-> GO:0060937, Created link GO:0060944 -part_of-> GO:0060942, Assigned namespace "biological_process" to GO:0060944] * Changed name of GO:0060944 from "null" to "neural crest-derived cardiac fibroblast cell fate commitment" * Set definition of GO:0060944 to "The commitment of neural crest cells to a cardiac fibroblast fate and their capacity to differentiate into cardiac fibroblast cells. A cardiac fibroblast is a connective tissue cell in the heart which secretes an extracellular matrix rich in collagen and other macromolecules." * Added definition dbxref GOC:mtg_heart to GO:0060944 * Created link GO:0060944 -OBO_REL:is_a-> GO:0060937 * Created link GO:0060944 -part_of-> GO:0060942 * Assigned namespace "biological_process" to GO:0060944 * [Changed name of GO:0060945 from "null" to "cardiac neuron cell differentiation", Set definition of GO:0060945 to "The process whereby a relatively unspecialized cell acquires specialized features of a neuron of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060945, Created link GO:0060945 -OBO_REL:is_a-> GO:0030182, Created link GO:0060945 -OBO_REL:is_a-> GO:0035051, Created link GO:0060945 -part_of-> GO:0048483, Assigned namespace "biological_process" to GO:0060945] * Changed name of GO:0060945 from "null" to "cardiac neuron cell differentiation" * Set definition of GO:0060945 to "The process whereby a relatively unspecialized cell acquires specialized features of a neuron of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060945 * Created link GO:0060945 -OBO_REL:is_a-> GO:0030182 * Created link GO:0060945 -OBO_REL:is_a-> GO:0035051 * Created link GO:0060945 -part_of-> GO:0048483 * Assigned namespace "biological_process" to GO:0060945 * [Changed name of GO:0060946 from "null" to "cardiac blood vessel endothelial cell differentiation", Set definition of GO:0060946 to "The process whereby a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell of the heart. Blood vessel endothelial cells are thin flattened cells that line the inside surfaces of blood vessels.", Added definition dbxref GOC:mtg_heart to GO:0060946, Created link GO:0060946 -OBO_REL:is_a-> GO:0035051, Created link GO:0060946 -OBO_REL:is_a-> GO:0060837, Assigned namespace "biological_process" to GO:0060946] * Changed name of GO:0060946 from "null" to "cardiac blood vessel endothelial cell differentiation" * Set definition of GO:0060946 to "The process whereby a relatively unspecialized cell acquires specialized features of a blood vessel endothelial cell of the heart. Blood vessel endothelial cells are thin flattened cells that line the inside surfaces of blood vessels." * Added definition dbxref GOC:mtg_heart to GO:0060946 * Created link GO:0060946 -OBO_REL:is_a-> GO:0035051 * Created link GO:0060946 -OBO_REL:is_a-> GO:0060837 * Assigned namespace "biological_process" to GO:0060946 * [Changed name of GO:0060947 from "null" to "cardiac vascular smooth muscle cell differentiation", Set definition of GO:0060947 to "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac vascular smooth muscle cell. A cardiac vascular smooth muscle cell covers the heart vasculature and lacks transverse striations in its constituent fibers.", Added definition dbxref GOC:mtg_heart to GO:0060947, Created link GO:0060947 -OBO_REL:is_a-> GO:0051145, Created link GO:0060947 -OBO_REL:is_a-> GO:0035051, Assigned namespace "biological_process" to GO:0060947] * Changed name of GO:0060947 from "null" to "cardiac vascular smooth muscle cell differentiation" * Set definition of GO:0060947 to "The process whereby a relatively unspecialized cell acquires specialized features of a cardiac vascular smooth muscle cell. A cardiac vascular smooth muscle cell covers the heart vasculature and lacks transverse striations in its constituent fibers." * Added definition dbxref GOC:mtg_heart to GO:0060947 * Created link GO:0060947 -OBO_REL:is_a-> GO:0051145 * Created link GO:0060947 -OBO_REL:is_a-> GO:0035051 * Assigned namespace "biological_process" to GO:0060947 * [Changed name of GO:0060948 from "null" to "cardiac vascular smooth muscle cell development", Set definition of GO:0060948 to "The process whose specific outcome is the progression of a cardiac vascular smooth muscle cell over time, from its formation to the mature state.", Added definition dbxref GOC:mtg_heart to GO:0060948, Created link GO:0060948 -part_of-> GO:0060947, Created link GO:0060948 -OBO_REL:is_a-> GO:0055006, Assigned namespace "biological_process" to GO:0060948] * Changed name of GO:0060948 from "null" to "cardiac vascular smooth muscle cell development" * Set definition of GO:0060948 to "The process whose specific outcome is the progression of a cardiac vascular smooth muscle cell over time, from its formation to the mature state." * Added definition dbxref GOC:mtg_heart to GO:0060948 * Created link GO:0060948 -part_of-> GO:0060947 * Created link GO:0060948 -OBO_REL:is_a-> GO:0055006 * Assigned namespace "biological_process" to GO:0060948 * [Changed name of GO:0060949 from "null" to "cardiac vascular smooth muscle cell fate commitment", Set definition of GO:0060949 to "The commitment of cells to a cardiac vascular smooth muscle cell fate and its capacity to differentiate into a cardiac vascular smooth muscle cell.", Added definition dbxref GOC:mtg_heart to GO:0060949, Created link GO:0060949 -OBO_REL:is_a-> GO:0060911, Created link GO:0060949 -part_of-> GO:0060947, Assigned namespace "biological_process" to GO:0060949] * Changed name of GO:0060949 from "null" to "cardiac vascular smooth muscle cell fate commitment" * Set definition of GO:0060949 to "The commitment of cells to a cardiac vascular smooth muscle cell fate and its capacity to differentiate into a cardiac vascular smooth muscle cell." * Added definition dbxref GOC:mtg_heart to GO:0060949 * Created link GO:0060949 -OBO_REL:is_a-> GO:0060911 * Created link GO:0060949 -part_of-> GO:0060947 * Assigned namespace "biological_process" to GO:0060949 * [Changed name of GO:0060950 from "null" to "cardiac glial cell differentiation", Set definition of GO:0060950 to "The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060950, Created link GO:0060950 -OBO_REL:is_a-> GO:0010001, Created link GO:0060950 -OBO_REL:is_a-> GO:0035051, Assigned namespace "biological_process" to GO:0060950] * Changed name of GO:0060950 from "null" to "cardiac glial cell differentiation" * Set definition of GO:0060950 to "The process whereby a relatively unspecialized cell acquires the specialized features of a glial cell of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060950 * Created link GO:0060950 -OBO_REL:is_a-> GO:0010001 * Created link GO:0060950 -OBO_REL:is_a-> GO:0035051 * Assigned namespace "biological_process" to GO:0060950 * [Changed name of GO:0060951 from "null" to "neural crest-derived cardiac glial cell differentiation", Set definition of GO:0060951 to "The process whereby a neural crest cell acquires the specialized features of a glial cell of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060951, Created link GO:0060951 -OBO_REL:is_a-> GO:0060950, Assigned namespace "biological_process" to GO:0060951] * Changed name of GO:0060951 from "null" to "neural crest-derived cardiac glial cell differentiation" * Set definition of GO:0060951 to "The process whereby a neural crest cell acquires the specialized features of a glial cell of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060951 * Created link GO:0060951 -OBO_REL:is_a-> GO:0060950 * Assigned namespace "biological_process" to GO:0060951 * [Changed name of GO:0060952 from "null" to "cardiac glial cell development", Set definition of GO:0060952 to "The process aimed at the progression of a cardiac glial cell over time, from its formation to the fully functional mature cell.", Added definition dbxref GOC:mtg_heart to GO:0060952, Created link GO:0060952 -OBO_REL:is_a-> GO:0021782, Created link GO:0060952 -OBO_REL:is_a-> GO:0055006, Created link GO:0060952 -part_of-> GO:0060950, Assigned namespace "biological_process" to GO:0060952] * Changed name of GO:0060952 from "null" to "cardiac glial cell development" * Set definition of GO:0060952 to "The process aimed at the progression of a cardiac glial cell over time, from its formation to the fully functional mature cell." * Added definition dbxref GOC:mtg_heart to GO:0060952 * Created link GO:0060952 -OBO_REL:is_a-> GO:0021782 * Created link GO:0060952 -OBO_REL:is_a-> GO:0055006 * Created link GO:0060952 -part_of-> GO:0060950 * Assigned namespace "biological_process" to GO:0060952 * [Changed name of GO:0060953 from "null" to "cardiac glial cell fate commitment", Set definition of GO:0060953 to "The commitment of cells to cardiac glial cell fates and their capacity to differentiate into cardiac glial cells.", Added definition dbxref GOC:mtg_heart to GO:0060953, Created link GO:0060953 -OBO_REL:is_a-> GO:0021781, Created link GO:0060953 -part_of-> GO:0060950, Created link GO:0060953 -OBO_REL:is_a-> GO:0060911, Assigned namespace "biological_process" to GO:0060953] * Changed name of GO:0060953 from "null" to "cardiac glial cell fate commitment" * Set definition of GO:0060953 to "The commitment of cells to cardiac glial cell fates and their capacity to differentiate into cardiac glial cells." * Added definition dbxref GOC:mtg_heart to GO:0060953 * Created link GO:0060953 -OBO_REL:is_a-> GO:0021781 * Created link GO:0060953 -part_of-> GO:0060950 * Created link GO:0060953 -OBO_REL:is_a-> GO:0060911 * Assigned namespace "biological_process" to GO:0060953 * [Changed name of GO:0060954 from "null" to "neural crest-derived cardiac glial cell development", Set definition of GO:0060954 to "The process aimed at the progression of a neural crest-derived cardiac glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.", Added definition dbxref GOC:mtg_heart to GO:0060954, Created link GO:0060954 -part_of-> GO:0060951, Created link GO:0060954 -OBO_REL:is_a-> GO:0060952, Assigned namespace "biological_process" to GO:0060954] * Changed name of GO:0060954 from "null" to "neural crest-derived cardiac glial cell development" * Set definition of GO:0060954 to "The process aimed at the progression of a neural crest-derived cardiac glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." * Added definition dbxref GOC:mtg_heart to GO:0060954 * Created link GO:0060954 -part_of-> GO:0060951 * Created link GO:0060954 -OBO_REL:is_a-> GO:0060952 * Assigned namespace "biological_process" to GO:0060954 * [Changed name of GO:0060955 from "null" to "neural crest-derived cardiac glial cell fate commitment", Set definition of GO:0060955 to "The commitment of neural crest cells to cardiac glial cell fates and their capacity to differentiate into cardiac glial cells.", Added definition dbxref GOC:mtg_heart to GO:0060955, Created link GO:0060955 -part_of-> GO:0060951, Created link GO:0060955 -OBO_REL:is_a-> GO:0060953, Assigned namespace "biological_process" to GO:0060955] * Changed name of GO:0060955 from "null" to "neural crest-derived cardiac glial cell fate commitment" * Set definition of GO:0060955 to "The commitment of neural crest cells to cardiac glial cell fates and their capacity to differentiate into cardiac glial cells." * Added definition dbxref GOC:mtg_heart to GO:0060955 * Created link GO:0060955 -part_of-> GO:0060951 * Created link GO:0060955 -OBO_REL:is_a-> GO:0060953 * Assigned namespace "biological_process" to GO:0060955 * [Changed name of GO:0060956 from "null" to "endocardial cell differentiation", Set definition of GO:0060956 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060956, Created link GO:0060956 -OBO_REL:is_a-> GO:0045446, Created link GO:0060956 -OBO_REL:is_a-> GO:0035051, Assigned namespace "biological_process" to GO:0060956] * Changed name of GO:0060956 from "null" to "endocardial cell differentiation" * Set definition of GO:0060956 to "The process whereby a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060956 * Created link GO:0060956 -OBO_REL:is_a-> GO:0045446 * Created link GO:0060956 -OBO_REL:is_a-> GO:0035051 * Assigned namespace "biological_process" to GO:0060956 * [Changed name of GO:0060957 from "null" to "endocardial cell fate commitment", Set definition of GO:0060957 to "The commitment of a cell to an endocardial cell fate and its capacity to differentiate into an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060957, Created link GO:0060957 -part_of-> GO:0060956, Created link GO:0060957 -OBO_REL:is_a-> GO:0060911, Created link GO:0060957 -OBO_REL:is_a-> GO:0060839, Assigned namespace "biological_process" to GO:0060957] * Changed name of GO:0060957 from "null" to "endocardial cell fate commitment" * Set definition of GO:0060957 to "The commitment of a cell to an endocardial cell fate and its capacity to differentiate into an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060957 * Created link GO:0060957 -part_of-> GO:0060956 * Created link GO:0060957 -OBO_REL:is_a-> GO:0060911 * Created link GO:0060957 -OBO_REL:is_a-> GO:0060839 * Assigned namespace "biological_process" to GO:0060957 * [Changed name of GO:0060958 from "null" to "endocardial cell development", Set definition of GO:0060958 to "The progression of an endocardial cell over time, from its formation to the mature cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060958, Created link GO:0060958 -OBO_REL:is_a-> GO:0001885, Created link GO:0060958 -part_of-> GO:0060956, Assigned namespace "biological_process" to GO:0060958] * Changed name of GO:0060958 from "null" to "endocardial cell development" * Set definition of GO:0060958 to "The progression of an endocardial cell over time, from its formation to the mature cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060958 * Created link GO:0060958 -OBO_REL:is_a-> GO:0001885 * Created link GO:0060958 -part_of-> GO:0060956 * Assigned namespace "biological_process" to GO:0060958 * [Changed name of GO:0070940 from "null" to "dephosphorylation of RNA polymerase II C-terminal domain", Set definition of GO:0070940 to "The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II.", Added definition dbxref GOC:mah to GO:0070940, Added synonym "CTD domain dephosphorylation of RNA polymerase II" to GO:0070940, Added general dbxref GOC:mah to synonym CTD domain dephosphorylation of RNA polymerase II of GO:0070940, Changed synonym scope of GO:0070940 from "Related" to "Exact", Created link GO:0070940 -OBO_REL:is_a-> GO:0006470, Assigned namespace "biological_process" to GO:0070940] * Changed name of GO:0070940 from "null" to "dephosphorylation of RNA polymerase II C-terminal domain" * Set definition of GO:0070940 to "The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II." * Added definition dbxref GOC:mah to GO:0070940 * Added synonym "CTD domain dephosphorylation of RNA polymerase II" to GO:0070940 * Added general dbxref GOC:mah to synonym CTD domain dephosphorylation of RNA polymerase II of GO:0070940 * Changed synonym scope of GO:0070940 from "Related" to "Exact" * Created link GO:0070940 -OBO_REL:is_a-> GO:0006470 * Assigned namespace "biological_process" to GO:0070940 * Changed name of GO:0004806 from "triacylglycerol lipase activity" to "triglyceride lipase activity" * Deleted synonym "triglyceride lipase activity" from GO:0004806 * Added synonym "triacylglycerol lipase activity" to GO:0004806 * Added general dbxref EC:3.1.1.3 to synonym triacylglycerol lipase activity of GO:0004806 * Changed synonym scope of GO:0004806 from "Related" to "Exact" * Deleted GO:0015148 --OBO_REL:is_a--> GO:0015753 * Created link GO:0015148 -part_of-> GO:0015753 * Created link GO:0015988 -OBO_REL:is_a-> GO:0034220 * Changed name of GO:0021925 from "Purkinje cell precursor proliferation" to "cerebellar Purkinje cell precursor proliferation" * Deleted GO:0035052 --part_of--> GO:0035051 * Deleted GO:0035053 --part_of--> GO:0035051 * Changed name of GO:0047197 from "triacylglycerol-sterol O-acyltransferase activity" to "triglyceride-sterol O-acyltransferase activity" * Added synonym "triacylglycerol-sterol O-acyltransferase activity" to GO:0047197 * Added general dbxref GOC:curators to synonym triacylglycerol-sterol O-acyltransferase activity of GO:0047197 * Changed synonym scope of GO:0047197 from "Related" to "Exact" * Added definition dbxref GOC:mtg_heart to GO:0055007 * Created link GO:0055007 -part_of-> GO:0048738 * Added definition dbxref GOC:mtg_heart to GO:0055011 * Added definition dbxref GOC:mtg_heart to GO:0055012 * Added definition dbxref GOC:mtg_heart to GO:0055013 * Added synonym "cardiomyocyte cell development" to GO:0055013 * Added general dbxref GOC:mtg_muscle to synonym cardiomyocyte cell development of GO:0055013 * Changed synonym scope of GO:0055013 from "Related" to "Exact" * Created link GO:0055013 -part_of-> GO:0055007 * Created link GO:0055013 -OBO_REL:is_a-> GO:0055006 From gocvs at genome.stanford.edu Wed Sep 30 21:30:13 2009 From: gocvs at genome.stanford.edu (Remote CVS for Gene Ontology) Date: Wed, 30 Sep 2009 21:30:13 -0700 Subject: [Go-diff] GO update 09/30/2009 Message-ID: <200910010430.n914UDBB001755@meatloaf.Stanford.EDU> OBODIFF of gene_ontology_write.obo version 1.808 by 1.811 [INFO] Reading [/share/go/saved/yesterday/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) [INFO] Reading [/share/go/saved/today/go/ontology/editors/gene_ontology_write.obo] (allowDangling = false) (followImports = true) * Created object of type obo:TERM with id GO:0003156 * Created object of type obo:TERM with id GO:0060959 * Created object of type obo:TERM with id GO:0060960 * Created object of type obo:TERM with id GO:0070941 * [Changed name of GO:0003156 from "null" to "regulation of organ formation", Set definition of GO:0003156 to "Any process that modulates the rate, frequency or extent of organ formation. Organ formation is the process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment.", Added definition dbxref GOC:dph to GO:0003156, Added definition dbxref GOC:tb to GO:0003156, Created link GO:0003156 -regulates-> GO:0048645, Created link GO:0003156 -OBO_REL:is_a-> GO:0022603, Assigned namespace "biological_process" to GO:0003156] * Changed name of GO:0003156 from "null" to "regulation of organ formation" * Set definition of GO:0003156 to "Any process that modulates the rate, frequency or extent of organ formation. Organ formation is the process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment." * Added definition dbxref GOC:dph to GO:0003156 * Added definition dbxref GOC:tb to GO:0003156 * Created link GO:0003156 -regulates-> GO:0048645 * Created link GO:0003156 -OBO_REL:is_a-> GO:0022603 * Assigned namespace "biological_process" to GO:0003156 * [Changed name of GO:0060959 from "null" to "cardiac neuron development", Set definition of GO:0060959 to "The process whose specific outcome is the progression of a cardiac neuron over time, from its formation to the mature state.", Added definition dbxref GOC:mtg_heart to GO:0060959, Added synonym "heart neuron development" to GO:0060959, Added general dbxref GOC:mtg_heart to synonym heart neuron development of GO:0060959, Changed synonym scope of GO:0060959 from "Related" to "Exact", Created link GO:0060959 -part_of-> GO:0060945, Created link GO:0060959 -OBO_REL:is_a-> GO:0055006, Created link GO:0060959 -OBO_REL:is_a-> GO:0048666, Assigned namespace "biological_process" to GO:0060959] * Changed name of GO:0060959 from "null" to "cardiac neuron development" * Set definition of GO:0060959 to "The process whose specific outcome is the progression of a cardiac neuron over time, from its formation to the mature state." * Added definition dbxref GOC:mtg_heart to GO:0060959 * Added synonym "heart neuron development" to GO:0060959 * Added general dbxref GOC:mtg_heart to synonym heart neuron development of GO:0060959 * Changed synonym scope of GO:0060959 from "Related" to "Exact" * Created link GO:0060959 -part_of-> GO:0060945 * Created link GO:0060959 -OBO_REL:is_a-> GO:0055006 * Created link GO:0060959 -OBO_REL:is_a-> GO:0048666 * Assigned namespace "biological_process" to GO:0060959 * [Changed name of GO:0060960 from "null" to "cardiac neuron fate commitment", Set definition of GO:0060960 to "The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron of the heart.", Added definition dbxref GOC:mtg_heart to GO:0060960, Added synonym "heart neuron fate commitment" to GO:0060960, Added general dbxref GOC:mtg_heart to synonym heart neuron fate commitment of GO:0060960, Changed synonym scope of GO:0060960 from "Related" to "Exact", Created link GO:0060960 -OBO_REL:is_a-> GO:0048663, Created link GO:0060960 -OBO_REL:is_a-> GO:0060911, Created link GO:0060960 -part_of-> GO:0060945, Assigned namespace "biological_process" to GO:0060960] * Changed name of GO:0060960 from "null" to "cardiac neuron fate commitment" * Set definition of GO:0060960 to "The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron of the heart." * Added definition dbxref GOC:mtg_heart to GO:0060960 * Added synonym "heart neuron fate commitment" to GO:0060960 * Added general dbxref GOC:mtg_heart to synonym heart neuron fate commitment of GO:0060960 * Changed synonym scope of GO:0060960 from "Related" to "Exact" * Created link GO:0060960 -OBO_REL:is_a-> GO:0048663 * Created link GO:0060960 -OBO_REL:is_a-> GO:0060911 * Created link GO:0060960 -part_of-> GO:0060945 * Assigned namespace "biological_process" to GO:0060960 * [Changed name of GO:0070941 from "null" to "eisosome assembly", Set definition of GO:0070941 to "The aggregation, arrangement and bonding together of a set of components to form an eisosome, a large immobile protein complex that forms at the plasma membrane and marks endocytic sites.", Added definition dbxref GOC:jp to GO:0070941, Added definition dbxref PMID:19564405 to GO:0070941, Created link GO:0070941 -OBO_REL:is_a-> GO:0043623, Assigned namespace "biological_process" to GO:0070941] * Changed name of GO:0070941 from "null" to "eisosome assembly" * Set definition of GO:0070941 to "The aggregation, arrangement and bonding together of a set of components to form an eisosome, a large immobile protein complex that forms at the plasma membrane and marks endocytic sites." * Added definition dbxref GOC:jp to GO:0070941 * Added definition dbxref PMID:19564405 to GO:0070941 * Created link GO:0070941 -OBO_REL:is_a-> GO:0043623 * Assigned namespace "biological_process" to GO:0070941 * Set definition of GO:0008265 to "Catalysis of the sulfurylation of the desulfo form of molybdenum cofactor (MoCo), a cofactor required for the activity of some enzymes, such as aldehyde oxidase." * Added definition dbxref GOC:mah to GO:0008265 * Added definition dbxref PMID:11549764 to GO:0008265 * Created link GO:0008634 -OBO_REL:is_a-> GO:0043065 * Deleted GO:0010181 --OBO_REL:is_a--> GO:0048029 * Deleted GO:0031647 --OBO_REL:is_a--> GO:0019538 * Deleted GO:0033238 --regulates--> GO:0009308 * Created link GO:0033238 -regulates-> GO:0044106 * Deleted GO:0033239 --negatively_regulates--> GO:0009308 * Created link GO:0033239 -negatively_regulates-> GO:0044106 * Deleted GO:0033240 --positively_regulates--> GO:0009308 * Created link GO:0033240 -positively_regulates-> GO:0044106 * Changed name of GO:0034248 from "regulation of amide metabolic process" to "regulation of cellular amide metabolic process" * Changed name of GO:0034249 from "negative regulation of amide metabolic process" to "negative regulation of cellular amide metabolic process" * Changed name of GO:0034250 from "positive regulation of amide metabolic process" to "positive regulation of cellular amide metabolic process" * Changed name of GO:0034251 from "regulation of amide catabolic process" to "regulation of cellular amide catabolic process" * Changed name of GO:0034252 from "negative regulation of amide catabolic process" to "negative regulation of cellular amide catabolic process" * Changed name of GO:0034253 from "positive regulation of amide catabolic process" to "positive regulation of cellular amide catabolic process" * Changed definition of GO:0040034 from "Controlling the timing and/or rate of a developmental event." to "Any process that modulates the rate, frequency or extent of the progression an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition at a consistent predetermined time point during its development." * Changed name of GO:0043403 from "skeletal muscle regeneration" to "skeletal muscle tissue regeneration" * Changed name of GO:0043415 from "positive regulation of skeletal muscle regeneration" to "positive regulation of skeletal muscle tissue regeneration" * Changed name of GO:0043416 from "regulation of skeletal muscle regeneration" to "regulation of skeletal muscle tissue regeneration" * Changed name of GO:0043417 from "negative regulation of skeletal muscle regeneration" to "negative regulation of skeletal muscle tissue regeneration" * Changed name of GO:0043605 from "amide catabolic process" to "cellular amide catabolic process" * Changed name of GO:0045843 from "negative regulation of striated muscle development" to "negative regulation of striated muscle tissue development" * Changed name of GO:0045844 from "positive regulation of striated muscle development" to "positive regulation of striated muscle tissue development" * Created link GO:0045884 -OBO_REL:is_a-> GO:0042981 * Created link GO:0045885 -OBO_REL:is_a-> GO:0006916 * Changed definition of GO:0045961 from "Any process that stops, prevents or reduces the frequency, rate or extent of heterochronic development." to "Any process that decreases the rate, frequency or extent of the progression an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition at a consistent predetermined time point during its development." * Changed definition of GO:0045962 from "Any process that activates or increases the frequency, rate or extent of heterochronic development." to "Any process that increases the rate, frequency or extent of the progression an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition at a consistent predetermined time point during its development." * Created link GO:0048167 -OBO_REL:is_a-> GO:0065008 * Changed definition of GO:0048504 from "The process controlling the point in time during development when an organ will form, and/or the rate at which organ formation occurs." to "Any process that modulates the rate, frequency or extent of organ formation at a consistent predetermined time point during development." * Added definition dbxref GOC:dph to GO:0048504 * Added definition dbxref GOC:tb to GO:0048504 * Deleted GO:0048504 --part_of--> GO:0048645 * Created link GO:0048504 -OBO_REL:is_a-> GO:0003156 * Changed definition of GO:0048505 from "The process controlling the activation and/or rate at which relatively unspecialized cells acquire specialized features." to "The process controlling the activation and/or rate at which relatively unspecialized cells acquire specialized features. Any process that modulates the rate, frequency or extent of the XXX at a consistent predetermined time point during its development." * Added definition dbxref GOC:dph to GO:0048505 * Added definition dbxref GOC:tb to GO:0048505 * Changed definition of GO:0048506 from "The process controlling the point in time during development when a meristem will change its identity, and/or the rate at which the change occurs." to "Any process that modulates the rate, frequency or extent of a change in identity of a meristem at a characteristic predetermined time point." * Added definition dbxref GOC:dph to GO:0048506 * Added definition dbxref GOC:tb to GO:0048506 * Changed name of GO:0048631 from "regulation of skeletal muscle growth" to "regulation of skeletal muscle tissue growth" * Changed name of GO:0048632 from "negative regulation of skeletal muscle growth" to "negative regulation of skeletal muscle tissue growth" * Changed name of GO:0048633 from "positive regulation of skeletal muscle growth" to "positive regulation of skeletal muscle tissue growth" * Changed name of GO:0048634 from "regulation of muscle development" to "regulation of muscle organ development" * Changed name of GO:0048635 from "negative regulation of muscle development" to "negative regulation of muscle organ development" * Changed name of GO:0048636 from "positive regulation of muscle development" to "positive regulation of muscle organ development" * Deleted synonym "sino-atrial node cell" from GO:0060921 * Added synonym "sino-atrial node cell differentiation" to GO:0060921 * Added general dbxref GOC:mtg_heart to synonym sino-atrial node cell differentiation of GO:0060921 * Changed synonym scope of GO:0060921 from "Related" to "Exact" * Added synonym "heart muscle cell fate commitment" to GO:0060923 * Added general dbxref GOC:mtg_heart to synonym heart muscle cell fate commitment of GO:0060923 * Changed synonym scope of GO:0060923 from "Related" to "Exact" * Added synonym "atrial heart muscle cell fate commitment" to GO:0060924 * Added general dbxref GOC:mtg_heart to synonym atrial heart muscle cell fate commitment of GO:0060924 * Changed synonym scope of GO:0060924 from "Related" to "Exact" * Added synonym "ventricular cardiomyocyte cell fate commitment" to GO:0060925 * Added general dbxref GOC:mtg_heart to synonym ventricular cardiomyocyte cell fate commitment of GO:0060925 * Changed synonym scope of GO:0060925 from "Related" to "Exact" * Added synonym "ventricular heart muscle cell fate commitment" to GO:0060925 * Added general dbxref GOC:mtg_heart to synonym ventricular heart muscle cell fate commitment of GO:0060925 * Changed synonym scope of GO:0060925 from "Related" to "Exact" * Added synonym "atrial-ventricular node cell development" to GO:0060928 * Added general dbxref GOC:mtg_heart to synonym atrial-ventricular node cell development of GO:0060928 * Changed synonym scope of GO:0060928 from "Related" to "Exact" * Added synonym "atrial-ventricular node cell fate commitment" to GO:0060929 * Added general dbxref GOC:mtg_heart to synonym atrial-ventricular node cell fate commitment of GO:0060929 * Changed synonym scope of GO:0060929 from "Related" to "Exact" * Added synonym "sino-atrial node cell commitment" to GO:0060930 * Added general dbxref GOC:mtg_heart to synonym sino-atrial node cell commitment of GO:0060930 * Changed synonym scope of GO:0060930 from "Related" to "Exact" * Added synonym "sino-atrial node cell development" to GO:0060931 * Added general dbxref GOC:mtg_heart to synonym sino-atrial node cell development of GO:0060931 * Changed synonym scope of GO:0060931 from "Related" to "Exact" * Changed definition of GO:0060934 from "The commitment of cells to His-Purkije cell fates and their capacity to differentiate into His-Purkinje cells. These cells form the fibers that regulate cardiac muscle contraction in the ventricles." to "The commitment of cells to His-Purkinje cell fates and their capacity to differentiate into His-Purkinje cells. These cells form the fibers that regulate cardiac muscle contraction in the ventricles." * Changed name of GO:0060945 from "cardiac neuron cell differentiation" to "cardiac neuron differentiation" * Added synonym "heart neuron differentiation" to GO:0060945 * Added general dbxref GOC:mtg_heart to synonym heart neuron differentiation of GO:0060945 * Changed synonym scope of GO:0060945 from "Related" to "Exact" * Added synonym "heart vascular smooth muscle cell differentiation" to GO:0060947 * Added general dbxref GOC:mtg_heart to synonym heart vascular smooth muscle cell differentiation of GO:0060947 * Changed synonym scope of GO:0060947 from "Related" to "Exact" * Added synonym "heart vascular smooth muscle cell development" to GO:0060948 * Added general dbxref GOC:mtg_heart to synonym heart vascular smooth muscle cell development of GO:0060948 * Changed synonym scope of GO:0060948 from "Related" to "Exact" * Added synonym "heart vascular smooth muscle cell fate commitment" to GO:0060949 * Added general dbxref GOC:mtg_heart to synonym heart vascular smooth muscle cell fate commitment of GO:0060949 * Changed synonym scope of GO:0060949 from "Related" to "Exact"