[go] mapping between DB_Object_ID and DB_Object_Symbol

[Valerie Wood]

Oops, I just realised that my ND annotations have the systematic ID in 
the synonyms column instead of the synonym. I think this will account 
for all the pombe occurrences. Will fix, sorry!

Val



>>>
>>> whitbread 1001 % grep 'SPCC777.13' gene_association.GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      SPCC777.13              GO: 
>>> 0003674      GO_REF:0000015  ND               
>>> F                       gene    taxon:4896      20070711GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      vps35           GO:0005768       
>>> PMID:16622069  IMP              C       retromer complex subunit  
>>> Vps35  SPCC777.13|vps35       gene     taxon:4896       
>>> 20060424        GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      vps35           GO:0030904       
>>> PMID:16622069  IMP              C       retromer complex subunit  
>>> Vps35  SPCC777.13|vps35       gene     taxon:4896       
>>> 20040625        GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      vps35           GO:0030904       
>>> PMID:16622069  ISS      SGD:S000003690  C       retromer complex  
>>> subunit Vps35  SPCC777.13|vps35gene    taxon:4896       
>>> 20040625        GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      vps35           GO:0006886       
>>> PMID:16622069  IMP              P       retromer complex subunit  
>>> Vps35  SPCC777.13|vps35       gene     taxon:4896       
>>> 20040625        GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      vps35           GO:0042147       
>>> PMID:16622069  IMP              P       retromer complex subunit  
>>> Vps35  SPCC777.13|vps35       gene     taxon:4896       
>>> 20060424        GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      vps35           GO:0030437       
>>> PMID:15189449  IMP              P       retromer complex subunit  
>>> Vps35  SPCC777.13|vps35       gene     taxon:4896       
>>> 20040625        GeneDB_Spombe
>>> GeneDB_Spombe   SPCC777.13      vps35           GO:0005829       
>>> PMID:16823372  IDA              C       retromer complex subunit  
>>> Vps35  SPCC777.13|vps35       gene     taxon:4896       
>>> 20060724        GeneDB_Spombe
>>>
>>> - is there a rule (I couldn't find one) that says the synonyms  
>>> should not repeat the DB_Object_ID and DB_Object_Symbol, or should  
>>> there be?  Would it save any space in the file sizes?
>>>
>>> Cheers,
>>> Gavin
>>> ________________________________________________________
>>>
>>> Gavin Sherlock
>>> Dept. of Genetics
>>> S201A, Grant Building,
>>> Stanford University Medical School,
>>> Stanford,
>>> CA 94305-5120
>>>
>>> Tel: 650 498 6012
>>> Fax: 650 724 3701
>>>
>>>
>
>



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