[go] AmiGO beta announcement

[Alexander Diehl]

On this view:

http://goweb-dev.stanford.edu/cgi-bin/amigo/gp-assoc.cgi?gp=MGI:MGI:2685628&session_id=1458amigo1197932357

the first line of the listed associations reads Qualifier: NOT, Term: 
GO:0051092 : activation of NF-kappaB transcription factor, link: 63 gene 
products,

which looks like there are 63 NOT annotations to GO:0051092, but in fact 
clicking on the 63 gene products link shows there are only 2 gene 
products annotated to this term with a NOT annotation and 61 that are 
just straight annotations without a qualifier.  Thus the original view 
linked to above misrepresents the situation.

I think the NOT annotations should be summarized on a separate line from 
the non-qualified annotations; ditto for annotations with other qualifiers.

By the way I like the beta a lot so far despite this little problem.

Thanks,

Alex


Seth Carbon wrote:
> GO Listers,
>
> The next version of AmiGO is in the final stages and we felt that now
> would be a good time to open it up to those outside the working group.
>
> For those of you interested in trying and testing out the new version of
> AmiGO, the main testing server is located at:
>
> http://goweb-dev.stanford.edu/cgi-bin/amigo/go.cgi
>
> Questions, comments, and bug reports should be directed to the Web
> Presence Working Group:
>
>
>
> web-presence-working-group at genome.stanford.edu
>
> In addition, the testing server at Berkeley is refreshed several times a
> day from CVS and changes made in response to bug reports can be seen as
> they are patched:
>
> http://toy.lbl.gov:9012/cgi-bin/amigo/go.cgi
>
> Cheers,
>
> -Seth
>
>
>   


-- 
Alexander Diehl, Ph.D.
Senior Scientific Curator
Mouse Genome Informatics
The Jackson Laboratory
600 Main Street
Bar Harbor, ME  04609

email:  adiehl at informatics.jax.org
work:  +1 (207) 288-6427
fax:  +1 (207) 288-6131