[go] AmiGO beta announcement

[Amelia Ireland]

Hi Alex,

>http://goweb-dev.stanford.edu/cgi-bin/amigo/gp-assoc.cgi?gp=MGI:MGI:2685628&session_id=1458amigo1197932357
>
>the first line of the listed associations reads Qualifier: NOT, Term: 
>GO:0051092 : activation of NF-kappaB transcription factor, link: 63 gene 
>products,
[snip]

I guess this has the potential to be confusing. Currently the gene product
counts displayed by AmiGO do not include the 'not' annotations, but
presumably users may still want to know the number of gene products
associated with a certain term even if for a given gene product, the
term association has the operator 'not'.

One possibility might be to swap the order of the columns so that the
qualifier / operator column appears next to the evidence code column
instead.

Do other people find this confusing, and if so, would swapping the columns
help?

Thanks,
Amelia.

-- 
Amelia Ireland
GO Editorial Office,
European Bioinformatics Institute, UK.
Carbon neutral driving: http://www.targetneutral.com/TONIC/index.jsp