[go] AmiGO beta announcement

[David Hill]

Seth (and others who contributed),

This is really great! It's clean and straightforward. I am still playing 
around with it but like what I'm seeing. I tried the term enrichment 
tool. It should provide which set of annotations it is using and which 
version of the GO it is using, maybe right at the top of the results. At 
some point we may want an option to incorporate the ortholog annotations 
into this, but I think that's down the road.

Did we ever decide to incorporate your term suggestion tool into AMIGO? 
I can't remember where that was supposed to go.

I'll let you know if I have more comments as I do more.

David

Seth Carbon wrote:
> GO Listers,
>
> New features that you may want to look for and/or test in the AmiGO
> beta:
>
> *) Term Enrichment tool (accessible from the button/link at the top of
> every page).
>
> *) GO Slimmer tool (also accessible from the button/link at the top of
> every page).
>
> *) New Advanced Search page.
>
> *) Searches are now more intelligent (will work harder to get the
> answers that you probably want).
>
> *) Searches are now sorted by relevance.
>
> *) The pie charts have been replaced with bar graphs.
>
> *) Improved download options (more formats more places).
>
> *) Improved user interface (all over the place).
>
> Cheers,
>
> -Seth
>
>
> On Mon, 2007-12-17 at 15:34 -0800, Seth Carbon wrote:
>   
>> GO Listers,
>>
>> The next version of AmiGO is in the final stages and we felt that now
>> would be a good time to open it up to those outside the working group.
>>
>> For those of you interested in trying and testing out the new version of
>> AmiGO, the main testing server is located at:
>>
>> http://goweb-dev.stanford.edu/cgi-bin/amigo/go.cgi
>>
>> Questions, comments, and bug reports should be directed to the Web
>> Presence Working Group:
>>
>>
>>
>> web-presence-working-group at genome.stanford.edu
>>
>> In addition, the testing server at Berkeley is refreshed several times a
>> day from CVS and changes made in response to bug reports can be seen as
>> they are patched:
>>
>> http://toy.lbl.gov:9012/cgi-bin/amigo/go.cgi
>>
>> Cheers,
>>
>> -Seth
>>
>>
>>
>>     
>
>