[go] AmiGO beta announcement

[Seth Carbon]

On Wed, 2007-12-19 at 19:29 +0000, Valerie Wood wrote:
> 
> I already tried it last week with the full SGD file  37591 and it did work, but it was VERY slow.
> 
> It really needs to work for the maximum number of annotations for any organism

Amelia has some code that's pretty far along that will be able to speed
this up (not graph-based). We can switch them once it matures--it still
needs a couple more features.

Cheers,

-Seth


> val
> 
> 
> Ben Hitz <hitz at genome.stanford.edu> wrote: 
> > 
> > Probably, we don't know yet.  It would be great if someone can test  
> > this (at what number does it go "unresponsive" ) on the goweb-dev  
> > server, so we can cap it before we go to production.
> > 
> > Ben
> > On Dec 19, 2007, at 2:30 AM, Jennifer Deegan (nee Clark) wrote:
> > 
> > > Hi,
> > >
> > > The new setup looks great. :-)
> > >
> > > What is the largest number of annotations that can be handled by  
> > > the GO Slimmer? We had a question about this on gohelp today. If  
> > > you could put a little note about this on the GO slimmer page then  
> > > that might help future users.
> > >
> > >
> > > Thanks,
> > >
> > > Jen
> > >
> > > -- 
> > > Jennifer Deegan (nee Clark)
> > > EMBL-European Bioinformatics Institute
> > > Gene Ontology Consortium
> > 
> > --
> > Ben Hitz
> > Senior Scientific Programmer ** Saccharomyces Genome Database ** GO  
> > Consortium
> > Stanford University ** hitz at genome.stanford.edu
> > 
> > 
> > 
> > 
> > 
>