[go] error in gene_ontology_edit.obo

[David Hill]

Hi Gavin,

Thanks for the heads-up. We will fix this error this afternoon when we 
are editing.

David

Gavin Sherlock wrote:
> Hi all,
>
> I have discovered what I presume is an error in the current 
> gene_ontology_edit.obo, cvs version: $Revision: 5.551, that I just 
> downloaded from the GO site.
>
> The following entry:
>
> [Term]
> id: GO:0008086
> name: light-activated voltage-gated calcium channel activity
> namespace: biological_process
> def: "Catalysis of the transmembrane transfer of a calcium ion by a 
> voltage-gated channel that is activated in response to light." 
> [GOC:mtg_transport]
> synonym: "light-activated voltage gated calcium channel activity" 
> EXACT []
> synonym: "light-activated voltage-dependent calcium channel activity" 
> EXACT []
> is_a: GO:0005245 ! voltage-gated calcium channel activity
> is_a: GO:0010461 ! light-activated channel activity
>
> is listed as a biological process, yet its parents are molecular 
> functions:
>
> id: GO:0005245
> name: voltage-gated calcium channel activity
> namespace: molecular_function
>
> id: GO:0010461
> name: light-activated channel activity
> namespace: molecular_function
>
> I think that's the only error, as fixing it in my local copy of the 
> file fixes the error generated by my parser.  Can it be fixed, and 
> should OBO-Edit detect this type of error automatically?
>
> Cheers,
> Gavin
>
>
>
>