[go] Do you upgrade InterPro2GO IEA annotations to ISS?

[E Dimmer]

Hi,

A question for those GO annotation groups that manually assess 
InterPro2GO 'IEA' predictions, and when appropriate, convert them into 
manual ISS annotations.

I would be very grateful if you could let me know what criteria your 
group uses to evaluate InterPro2GO annotations. What data sources do you 
look at to confirm whether these electronic predictions are correct and 
what information does your final annotation include? (i.e. I assume that 
the InterPro ID would go into the 'with' column, but what would be cited 
in the reference column - do you have a GO reference?), also how long 
does this process take? Am I right in thinking that S. Pombe and 
DictyBase groups carry out these kinds of annotations?

I have just been asked this by a group who are considering whether they 
could carry out this kind of assessment while annotating their new genome.

Thanks,
Emily

-- 
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    Emily Dimmer
    GOA Coordinator
    EMBL-EBI
    Wellcome Trust Genome Campus
    Hinxton
    Cambridge CB10 1SD, U.K.
    Tel:     +44 1223 494654
    Fax:    +44 1223 494468
    email:  edimmer at ebi.ac.uk
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